Psyllid ID: psy6300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHH
Coil and Loop (DISEMBL)
mvatddvsdlspeLLLYRASTVHNLPVMCHALALgaskdwtnpnddhrTYLHQAVIgvndvsdlspeLLLYRASTVHNLPVMCHALALgaskdwtnpnddhrTYLHQAVIGNSVMACEYLILNglkincpdaqgktplylatelgHTSQVCLLLKHkadqhivdssgveplTLAVEKANADIVTL
Flexible Loop (DISEMBL)
mvatddvsdlspELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVdssgvepltlavekanadivtl
Low Complexity Region (SEG)
MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Disordered region (IsUnstruct)
************ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV**********
Disordered Region (DISOPRED)
MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Disordered Region (DISEMBL)
*********LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Disordered Region (DISPRO)
*VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q6ZQK5	770	Arf-GAP with coiled-coil,	yes	N/A	0.556	0.133	0.539	2e-32
Q5FVC7	770	Arf-GAP with coiled-coil,	yes	N/A	0.556	0.133	0.539	2e-32
Q6IVG4	778	Arf-GAP with coiled-coil,	yes	N/A	0.556	0.132	0.539	4e-32
Q15057	778	Arf-GAP with coiled-coil,	yes	N/A	0.556	0.132	0.539	4e-32
Q5ZK62	781	Arf-GAP with coiled-coil,	no	N/A	0.681	0.161	0.523	2e-30
Q15027	740	Arf-GAP with coiled-coil,	no	N/A	0.681	0.170	0.503	3e-26
A5PK26	745	Arf-GAP with coiled-coil,	no	N/A	0.681	0.169	0.488	1e-24
Q96P50	834	Arf-GAP with coiled-coil,	no	N/A	0.697	0.154	0.488	2e-24
Q8K2H4	740	Arf-GAP with coiled-coil,	no	N/A	0.686	0.171	0.453	4e-23
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.632	0.062	0.319	4e-08

>sp|Q6ZQK5|ACAP2_MOUSE Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D   L+P L LYRAS   NLP M  ALA GA  +W N +++  T L QAV+G S++ CE+
Sbjct: 592 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSDENQATPLIQAVLGGSLVTCEF 651

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct: 652 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 711

Query: 180 ADIVTL 185
           ADIVTL
Sbjct: 712 ADIVTL 717

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).
Mus musculus (taxid: 10090)

>sp|Q5FVC7|ACAP2_RAT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D   L+P L LYRAS   NLP M  ALA GA  +W N +++  T L QAV+G S++ CE+
Sbjct: 592 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSDENQATPLIQAVLGGSLVTCEF 651

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct: 652 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 711

Query: 180 ADIVTL 185
           ADIVTL
Sbjct: 712 ADIVTL 717

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Rattus norvegicus (taxid: 10116)

>sp|Q6IVG4|ACAP2_RABIT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 84/126 (66%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D   L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+
Sbjct: 600 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEF 659

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct: 660 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 719

Query: 180 ADIVTL 185
           ADIVTL
Sbjct: 720 ADIVTL 725

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Oryctolagus cuniculus (taxid: 9986)

>sp|Q15057|ACAP2_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3

 Score =  137 bits (345), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 84/126 (66%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D   L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+
Sbjct: 600 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEF 659

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct: 660 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 719

Query: 180 ADIVTL 185
           ADIVTL
Sbjct: 720 ADIVTL 725

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Homo sapiens (taxid: 9606)

>sp|Q5ZK62|ACAP2_CHICK Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus GN=ACAP2 PE=2 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/126 (52%), Positives = 83/126 (65%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D   L+P L LYRA+   NLP M  ALA GA  +W N  ++  T L QAV G S++ CE+
Sbjct: 602 DSRQLNPGLHLYRAAFEKNLPDMAEALAHGAEVNWVNMEENKATPLIQAVRGGSLVTCEF 661

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D +G+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct: 662 LLQNGANVNIRDMKGRGPLHHATVLGHTGQVCLFLKRGANQHATDEDGKDPLSIAVEAAN 721

Query: 180 ADIVTL 185
           ADIVTL
Sbjct: 722 ADIVTL 727

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Gallus gallus (taxid: 9031)

>sp|Q15027|ACAP1_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ACAP1 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/127 (50%), Positives = 80/127 (62%), Gaps = 1/127 (0%)

Query: 60  DVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACE 118
           D+  L P  LL+RAS    +LP M  ALA GA  +W N   D+ T L QA   NS++ACE
Sbjct: 565 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACE 624

Query: 119 YLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178
           +L+ NG  +N  D+ G+ PL+ AT LGHT   CL LK  AD    DS G +PLT+A+E A
Sbjct: 625 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 684

Query: 179 NADIVTL 185
           NADIVTL
Sbjct: 685 NADIVTL 691

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface.

Homo sapiens (taxid: 9606)

>sp|A5PK26|ACAP1_BOVIN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ACAP1 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 5/131 (3%)

Query: 60  DVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAV----IGNSV 114
           D+  L P  LL+RA+    +LP M  ALA GA  +W N   ++ T L QA     + NS+
Sbjct: 566 DLQSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNGGQENATPLIQATAAVRVLNSL 625

Query: 115 MACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
           +ACE+L+ NG  +N  D QG+ PL+ AT LGHT   CL LK  AD  + DS G +PLT+A
Sbjct: 626 LACEFLLQNGANVNQVDNQGRGPLHHATILGHTGLACLFLKRGADLGVRDSEGRDPLTIA 685

Query: 175 VEKANADIVTL 185
           VE ANADIVTL
Sbjct: 686 VETANADIVTL 696

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface.

Bos taurus (taxid: 9913)

>sp|Q96P50|ACAP3_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ACAP3 PE=1 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/129 (48%), Positives = 87/129 (67%)

Query: 57  GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMA 116
           G+ DV +L P LL +RA+   +LP +  ALA GA  +W +  D+ +T L QAV+G S++ 
Sbjct: 659 GLADVRELHPGLLAHRAARARDLPALAAALAHGAEVNWADAEDEGKTPLVQAVLGGSLIV 718

Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
           CE+L+ NG  +N  D++G+ PL+ AT LG T QVCL LK  ADQH +D    +PL +AV+
Sbjct: 719 CEFLLQNGADVNQRDSRGRAPLHHATLLGRTGQVCLFLKRGADQHALDQEQRDPLAIAVQ 778

Query: 177 KANADIVTL 185
            ANADIVTL
Sbjct: 779 AANADIVTL 787

GTPase-activating protein for the ADP ribosylation factor family.

Homo sapiens (taxid: 9606)

>sp|Q8K2H4|ACAP1_MOUSE Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Acap1 PE=1 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 1/128 (0%)

Query: 59  NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
           +D+  L P  LL++A+    +LP M  ALA GA  +W N    + T L +A   NS++AC
Sbjct: 564 DDMGSLHPGALLFQAAGHPPSLPTMADALAHGADVNWVNVGQGNATPLIRATAANSLLAC 623

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
           E+L+ NG  +N  D+ G+ PL+ AT LGHT   CL LK  AD    D+ G +PLT+A+E 
Sbjct: 624 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTEGRDPLTIAMET 683

Query: 178 ANADIVTL 185
            NADIVTL
Sbjct: 684 TNADIVTL 691

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 62  SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
           S L+P   L+ AS + +LP++ + L  GAS + +N   +  T LH A         +YL+
Sbjct: 403 SGLTP---LHVASFMGHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLL 457

Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
            N  K+N      +TPL+ A  +GHT+ V LLL++ A+ ++  ++G  PL +A  + + +
Sbjct: 458 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 517

Query: 182 IV 183
            V
Sbjct: 518 TV 519

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
350401296	910	PREDICTED: arf-GAP with coiled-coil, ANK	0.664	0.135	0.731	7e-47
383857513	916	PREDICTED: arf-GAP with coiled-coil, ANK	0.664	0.134	0.731	1e-46
328782537	912	PREDICTED: arf-GAP with coiled-coil, ANK	0.664	0.134	0.723	1e-46
380021290	912	PREDICTED: arf-GAP with coiled-coil, ANK	0.664	0.134	0.723	2e-46
340723352	910	PREDICTED: arf-GAP with coiled-coil, ANK	0.664	0.135	0.723	7e-46
332022484	920	Arf-GAP with coiled-coil, ANK repeat and	0.664	0.133	0.699	8e-46
307192436	868	Centaurin-beta-2 [Harpegnathos saltator]	0.664	0.141	0.691	1e-43
242025396	827	Centaurin-beta, putative [Pediculus huma	0.940	0.210	0.524	2e-43
322790746	867	hypothetical protein SINV_11581 [Solenop	0.664	0.141	0.611	3e-42
193603667	740	PREDICTED: arf-GAP with coiled-coil, ANK	0.681	0.170	0.626	7e-42

>gi|350401296|ref|XP_003486112.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like [Bombus impatiens]

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 90/123 (73%), Positives = 104/123 (84%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K WTN ND  R  LHQA+I  SVM+CEYLIL
Sbjct: 733 NLHPEMLLYKAAAAHNLPVMCAALAAGADKSWTNVNDRGRNALHQAIISGSVMSCEYLIL 792

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA GKTPLYLATELGHT+QVCLLLKH+ADQHI D SGV+PL++AV++ANADI
Sbjct: 793 NGARINCQDADGKTPLYLATELGHTAQVCLLLKHRADQHIEDESGVKPLSIAVKEANADI 852

Query: 183 VTL 185
           VTL
Sbjct: 853 VTL 855

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857513|ref|XP_003704249.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like [Megachile rotundata]

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/123 (73%), Positives = 104/123 (84%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K WTN ND  R  LHQA+I  SVM+CEYLIL
Sbjct: 739 NLHPEMLLYKAAAAHNLPVMCAALAAGADKSWTNVNDRGRNALHQAIISGSVMSCEYLIL 798

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA GKTPLYLATELGHT+QVCLLLKH+ADQHI D SGV+PL++AV++ANADI
Sbjct: 799 NGARINCQDADGKTPLYLATELGHTAQVCLLLKHRADQHIQDESGVKPLSIAVKEANADI 858

Query: 183 VTL 185
           VTL
Sbjct: 859 VTL 861

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782537|ref|XP_392754.3| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [Apis mellifera]

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K WTN ND  R  LHQA+I  SVM+CEYLIL
Sbjct: 735 NLHPEMLLYKAAAAHNLPVMCAALAAGADKSWTNVNDRGRNALHQAIISGSVMSCEYLIL 794

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA GKTPLYLATELGHT+QVCLLLKH+ADQHI D SG++PL++AV++ANADI
Sbjct: 795 NGARINCQDADGKTPLYLATELGHTAQVCLLLKHRADQHIEDESGIKPLSIAVKEANADI 854

Query: 183 VTL 185
           VTL
Sbjct: 855 VTL 857

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021290|ref|XP_003694502.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like [Apis florea]

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K WTN ND  R  LHQA+I  SVM+CEYLIL
Sbjct: 735 NLHPEMLLYKAAAAHNLPVMCAALASGADKSWTNVNDRGRNALHQAIISGSVMSCEYLIL 794

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA GKTPLYLATELGHT+QVCLLLKH+ADQHI D SG++PL++AV++ANADI
Sbjct: 795 NGARINCQDADGKTPLYLATELGHTAQVCLLLKHRADQHIEDESGIKPLSIAVKEANADI 854

Query: 183 VTL 185
           VTL
Sbjct: 855 VTL 857

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723352|ref|XP_003400054.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like [Bombus terrestris]

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 103/123 (83%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K WTN ND  R  LHQA+I  SVM+CEYLIL
Sbjct: 733 NLHPEMLLYKAAAAHNLPVMCAALAAGADKSWTNVNDRGRNALHQAIISGSVMSCEYLIL 792

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA GKT LYLATELGHT+QVCLLLKH+ADQHI D SGV+PL++AV++ANADI
Sbjct: 793 NGARINCQDADGKTSLYLATELGHTAQVCLLLKHRADQHIEDESGVKPLSIAVKEANADI 852

Query: 183 VTL 185
           VTL
Sbjct: 853 VTL 855

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022484|gb|EGI62791.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [Acromyrmex echinatior]

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 106/123 (86%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L PE+LLY+A+  HNLPVMC ALA GA K W+N ND  R+ LHQA+I  SVM+CEYL+L
Sbjct: 743 NLHPEMLLYKAAAAHNLPVMCAALAAGADKLWSNVNDKSRSSLHQAIISGSVMSCEYLLL 802

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +INC DA+GKTPL+LATELGHT+QVCLLLKH+ADQHI D SG++PL++AV++ANADI
Sbjct: 803 NGARINCQDAEGKTPLHLATELGHTAQVCLLLKHRADQHIEDESGIKPLSIAVKEANADI 862

Query: 183 VTL 185
           VTL
Sbjct: 863 VTL 865

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192436|gb|EFN75652.1| Centaurin-beta-2 [Harpegnathos saltator]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 104/123 (84%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +L P++LLY+A+  HNLPVMC ALA GA K W+N +D  R+ LHQA+I  SVM+CEYL+L
Sbjct: 691 NLHPDMLLYKAAAAHNLPVMCAALAAGADKLWSNVHDKSRSALHQAIISGSVMSCEYLLL 750

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG +IN  DA GKTPLYLATELGHT+QVCLLLKH+ADQHI D SGV+PL++AV++ANADI
Sbjct: 751 NGARINSRDADGKTPLYLATELGHTAQVCLLLKHRADQHIEDESGVKPLSIAVKEANADI 810

Query: 183 VTL 185
           VTL
Sbjct: 811 VTL 813

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025396|ref|XP_002433110.1| Centaurin-beta, putative [Pediculus humanus corporis] gi|212518651|gb|EEB20372.1| Centaurin-beta, putative [Pediculus humanus corporis]

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 9/183 (4%)

Query: 3   ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVS 62
           + DD++  S +LLL+    ++  PV   ++ L + +D T   D++       + G  D++
Sbjct: 606 SCDDLAK-SSDLLLF-GEDLNKHPV-GGSIELPSDQDSTGGEDENE------ITGEEDIA 656

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL 122
           +  P LLLY+A+  HNLPVMC ALALGA K WTN  D +R+ LHQA+   SVMACEYL+L
Sbjct: 657 NFHPNLLLYKAAAAHNLPVMCEALALGADKHWTNSEDFNRSSLHQAINSGSVMACEYLLL 716

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
           NG  +N  D +G TPL+LATELGHT+QVCLLLKH+ADQHI +   VEPL++AVE ANADI
Sbjct: 717 NGAMMNVQDVEGNTPLHLATELGHTAQVCLLLKHRADQHIKNLKEVEPLSIAVENANADI 776

Query: 183 VTL 185
           VTL
Sbjct: 777 VTL 779

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790746|gb|EFZ15490.1| hypothetical protein SINV_11581 [Solenopsis invicta]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 16/139 (11%)

Query: 63  DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI------------ 110
           +L PE+LLY+A+T HNLPVMC ALA GA K W+N ND  R+ LHQA+I            
Sbjct: 674 NLHPEMLLYKAATAHNLPVMCAALAAGADKLWSNVNDKSRSALHQAIISCSSSSSNSCSL 733

Query: 111 ----GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS 166
                 SVM+CEYL+LNG +INC D++GKTPL+LATELGHT+QVCLLLKH+A+QHI D S
Sbjct: 734 FSCIQGSVMSCEYLLLNGARINCQDSEGKTPLHLATELGHTAQVCLLLKHRANQHIEDES 793

Query: 167 GVEPLTLAVEKANADIVTL 185
           G++PL++AV++ANADIVTL
Sbjct: 794 GIKPLSIAVKEANADIVTL 812

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193603667|ref|XP_001947780.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like [Acyrthosiphon pisum]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 100/126 (79%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           D+S L P++LLYRA+  HNLPVMCHA+A GA K+W NPND+ RT L QA++  SVMACEY
Sbjct: 582 DISTLRPDMLLYRAAAAHNLPVMCHAIATGADKNWKNPNDNGRTSLFQAILSGSVMACEY 641

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           LILN   IN  D  G+TPL+ AT+LGHT+QVCLLLKHKA+Q++ D   +EPL +A ++AN
Sbjct: 642 LILNASDINIQDDHGQTPLFFATQLGHTAQVCLLLKHKANQYLRDHDNIEPLEVATKQAN 701

Query: 180 ADIVTL 185
           A+IVTL
Sbjct: 702 ANIVTL 707

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
UNIPROTKB|F1NGZ5	834	ACAP3 "Uncharacterized protein	0.729	0.161	0.503	5.4e-32
FB|FBgn0039056	828	CenB1A "Centaurin beta 1A" [Dr	0.670	0.149	0.564	2.2e-30
UNIPROTKB|I3LE47	484	ACAP2 "Uncharacterized protein	0.675	0.258	0.544	3e-30
UNIPROTKB|I3LBU5	474	ACAP2 "Uncharacterized protein	0.681	0.265	0.539	3.8e-30
UNIPROTKB|J9NV32	660	ACAP2 "Uncharacterized protein	0.681	0.190	0.547	8.7e-30
UNIPROTKB|F1PAC1	782	ACAP2 "Uncharacterized protein	0.681	0.161	0.547	1.4e-29
MGI|MGI:1925868	770	Acap2 "ArfGAP with coiled-coil	0.681	0.163	0.539	2.2e-29
RGD|1562939	770	Acap2 "ArfGAP with coiled-coil	0.681	0.163	0.539	2.2e-29
UNIPROTKB|Q5FVC7	770	Acap2 "Arf-GAP with coiled-coi	0.681	0.163	0.539	2.2e-29
UNIPROTKB|F1MZ03	780	ACAP2 "Uncharacterized protein	0.681	0.161	0.539	2.9e-29

UNIPROTKB|F1NGZ5 ACAP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 5.4e-32, P = 5.4e-32
 Identities = 68/135 (50%), Positives = 96/135 (71%)

Query:    51 LHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI 110
             + Q    + D+ +L P LL+Y+A+   NLP+M  ALA GA  +W N  D+++T L QAV+
Sbjct:   652 IEQEASDLEDLRELHPGLLIYKAAQARNLPLMAEALAHGAEVNWVNDEDENKTPLVQAVM 711

Query:   111 GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP 170
             G S++ACE+L+ NG  +N  D++G+ PL+ AT +GHT QVCL LK  A+QH VDS G +P
Sbjct:   712 GGSLIACEFLLQNGADVNQKDSRGRAPLHHATYMGHTGQVCLFLKRGANQHAVDSDGQDP 771

Query:   171 LTLAVEKANADIVTL 185
             L++AV+ ANADIVTL
Sbjct:   772 LSIAVQAANADIVTL 786

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

FB|FBgn0039056 CenB1A "Centaurin beta 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 345 (126.5 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 70/124 (56%), Positives = 85/124 (68%)

Query:    62 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
             S L    LLY AS VHNLPVMC A ALGA K W NP D  R++LHQAVI  SVMACE+L+
Sbjct:   644 SQLDANQLLYMASVVHNLPVMCMAFALGADKMWKNPQDRQRSFLHQAVISGSVMACEFLL 703

Query:   122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
             LNG  I+  D  G + L+++T  GH +QV LLLKHKA   +  S G + L +AV++ NAD
Sbjct:   704 LNGAAIDAVDEMGYSALHISTAKGHIAQVYLLLKHKAAYDLSSSDGKKALDIAVDQENAD 763

Query:   182 IVTL 185
             IVTL
Sbjct:   764 IVTL 767

GO:0008060 "ARF GTPase activator activity" evidence=ISS

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|I3LE47 ACAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/125 (54%), Positives = 85/125 (68%)

Query:    61 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
             V+ L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+L
Sbjct:   307 VAHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEFL 366

Query:   121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
             + NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE ANA
Sbjct:   367 LQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAANA 426

Query:   181 DIVTL 185
             DIVTL
Sbjct:   427 DIVTL 431

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|I3LBU5 ACAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/126 (53%), Positives = 84/126 (66%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+
Sbjct:   296 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEF 355

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct:   356 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 415

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   416 ADIVTL 421

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|J9NV32 ACAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 8.7e-30, P = 8.7e-30
 Identities = 69/126 (54%), Positives = 84/126 (66%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+
Sbjct:   482 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEF 541

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PLT+AVE AN
Sbjct:   542 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLTIAVEAAN 601

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   602 ADIVTL 607

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1PAC1 ACAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 69/126 (54%), Positives = 84/126 (66%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N  ++  T L QAV+G S++ CE+
Sbjct:   604 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSEENKATPLIQAVLGGSLVTCEF 663

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PLT+AVE AN
Sbjct:   664 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLTIAVEAAN 723

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   724 ADIVTL 729

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

MGI|MGI:1925868 Acap2 "ArfGAP with coiled-coil, ankyrin repeat and PH domains 2" [Mus musculus (taxid:10090)]

 Score = 335 (123.0 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N +++  T L QAV+G S++ CE+
Sbjct:   592 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSDENQATPLIQAVLGGSLVTCEF 651

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct:   652 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 711

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   712 ADIVTL 717

GO:0001726 "ruffle" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030029 "actin filament-based process" evidence=ISO

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1562939 Acap2 "ArfGAP with coiled-coil, ankyrin repeat and PH domains 2" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N +++  T L QAV+G S++ CE+
Sbjct:   592 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSDENQATPLIQAVLGGSLVTCEF 651

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct:   652 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 711

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   712 ADIVTL 717

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|Q5FVC7 Acap2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W N +++  T L QAV+G S++ CE+
Sbjct:   592 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWANSDENQATPLIQAVLGGSLVTCEF 651

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct:   652 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 711

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   712 ADIVTL 717

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1MZ03 ACAP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query:    60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
             D   L+P L LYRAS   NLP M  ALA GA  +W+N  ++  T L QAV+G S++ CE+
Sbjct:   602 DSKHLNPGLQLYRASYEKNLPKMAEALAHGADVNWSNSEENKATPLIQAVLGGSLVTCEF 661

Query:   120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
             L+ NG  +N  D QG+ PL+ AT LGHT QVCL LK  A+QH  D  G +PL++AVE AN
Sbjct:   662 LLQNGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEAAN 721

Query:   180 ADIVTL 185
             ADIVTL
Sbjct:   722 ADIVTL 727

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZQK5	ACAP2_MOUSE	No assigned EC number	0.5396	0.5567	0.1337	yes	N/A
Q5FVC7	ACAP2_RAT	No assigned EC number	0.5396	0.5567	0.1337	yes	N/A
Q6IVG4	ACAP2_RABIT	No assigned EC number	0.5396	0.5567	0.1323	yes	N/A
Q15057	ACAP2_HUMAN	No assigned EC number	0.5396	0.5567	0.1323	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
            L+ A++  +L V+   L  GA  D    ++D RT LH A     +   + L+  G  +N
Sbjct: 10  PLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D  G TPL+LA   G+   V LLLKH AD +  D  G  PL LA +  + ++V L
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.6 bits (150), Expect = 9e-13
 Identities = 35/88 (39%), Positives = 47/88 (53%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           ++D RT LH A     +   + L+ NG  +N  D  G+TPL+LA + GH   V LLL+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +  D  G  PL LA    N D+V L
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ A+   NL ++   L  GA  +      D  T LH A    ++   + L+ +G  +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
            D  G T L+LA   G+   V LLL+H AD ++ D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
           LH A    ++   + L+  G  +N  D    T L+LA   G+   V LLL+H AD +  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 165 SSGVEPLTLAVEKANADIVTL 185
             G   L LA    N +IV L
Sbjct: 59  KDGNTALHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           N  D  G+TPL+LA   GH   V LLL++ AD +  D+ G  PL LA +  + +IV L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 106 HQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS 165
             A  G++V A   L+  G   NC D  G+TPL++A   GH   V +LL+  AD  ++D 
Sbjct: 88  QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 166 SGVEPLTLAVEKANADIVTL 185
            G  PL LA E    ++V L
Sbjct: 147 DGKTPLELAEENGFREVVQL 166

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)

Query: 15  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS 74
            L+ A++  +L V+   L  GA  D    ++D RT LH A                    
Sbjct: 10  PLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKN----------------- 50

Query: 75  TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG 134
              +L ++   L  GA  +  +   D  T LH A    ++   + L+ +G  +N  D  G
Sbjct: 51  --GHLEIVKLLLEKGADVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 135 KTPLYLATELGHTSQVCLLL 154
           +TPL+LA + GH   V LLL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 88  LGASKDWTNPNDDHRTYLHQAVIGNSVMAC--EYLILNGLKINCPDAQGKTPLYLATELG 145
           + A  D    +    T LH    G+S        L++ G+ IN  +  G+TPL+ A    
Sbjct: 209 IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268

Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
           +      L+   AD + V S G  PL+L V   N   V 
Sbjct: 269 NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVR 307

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
            RT LH+A I   +   +YL+  G+ IN  D  G T L++A E G+   + LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
            YL+  G+ IN  D  G TPL+ A    +   V  LL   A+ ++V+  G  PL +A+  
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN 235

Query: 178 ANADIVTL 185
            N +I  L
Sbjct: 236 NNKEIFKL 243

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA---QGKTPLYLATELG 145
           GA  D   P  D  + LH AV    V A E L+  G   +  D     G TPL+LAT L 
Sbjct: 58  GAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFAD--DVFYKDGMTPLHLATILK 113

Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               + LL+   AD  I ++    PL LAV   +   + L
Sbjct: 114 KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 35  GASKDWTNPNDDHRTYLHQAVIG---------------VNDVSDLSPELLLYRASTVHNL 79
           GA  D   P  D  + LH AV                  +DV        L+ A+ +  L
Sbjct: 58  GAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL 115

Query: 80  PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLY 139
            +M   +A GA  D   PN D  + LH AV+   +   E LI +   ++  D  G TPL 
Sbjct: 116 DIMKLLIARGADPDI--PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLI 173

Query: 140 LATELGHTSQVCLLLKHKADQHIVDSSG-VEPLTLAVEKANADIVTL 185
           +A   G  +   +LL   A+      +G V  L  A+E    DIV L
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA-----TELGHTSQVCLLLKH 156
           R  LH A         + L+ +G  +N  DA G TPL+LA        G+     LLL+ 
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 157 KADQHIV---DSSGVEPLTLAVEKANADIVTL 185
            AD  +    D  G  PL  A    +ADIV L
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 95  TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
            +PN      L  A  GN+ +  E L+   L  +  D++G+TPL++A   G+   V +LL
Sbjct: 521 DDPNMASNL-LTVASTGNAAL-LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 155 KHKADQHIVDSSG 167
           KH  + HI D++G
Sbjct: 579 KHACNVHIRDANG 591

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 24/93 (25%), Positives = 44/93 (47%)

Query: 91  SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV 150
             D  N + ++   + + +  + ++  E L+  G  +N  D    TP++ A E G+   V
Sbjct: 135 HYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMV 194

Query: 151 CLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
            LLL + AD +I+    +  L  AV+  N D +
Sbjct: 195 NLLLSYGADVNIIALDDLSVLECAVDSKNIDTI 227

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
           G+ +N  DA+ KT L+ A + G    + +L ++ AD +I D +G  P+ +A++    DI+
Sbjct: 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII 173

Query: 184 TL 185
            L
Sbjct: 174 KL 175

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 103 TYLHQAVIGN-SVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC-LLLKHKADQ 160
           T LH A+I N S +    L++N   IN  D  G TPL+ A        +  +LL HKAD 
Sbjct: 225 TPLHNAIIHNRSAIE---LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI 281

Query: 161 HIVDSSGVEPLTLAVEKANADIV 183
            I D+ G  P+  A +  N D V
Sbjct: 282 SIKDNKGENPIDTAFKYINKDPV 304

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 25/158 (15%)

Query: 46  DHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYL 105
           D+   ++ +     + S     L   + +      ++   L  GA+ +   P+++  T L
Sbjct: 56  DNGADINSST---KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN--APDNNGITPL 110

Query: 106 HQAVIG--NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS--------------- 148
             A+    NS    EYL+ NG  +N  ++ G+  L+L  E                    
Sbjct: 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170

Query: 149 ---QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
              +V  LL +    +I D  G  PL  AV   N + V
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 86  LALGASKDWTNPNDDHR--TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
           L+ GA     N  D H+  T LH A         E L+  G  +N PD    +PL+ A +
Sbjct: 154 LSYGAD---INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210

Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
             +   V +LL++ A     D  G  PL ++V
Sbjct: 211 HYNKPIVHILLENGASTDARDKCGNTPLHISV 242

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
            G TPL+LA   GH   V LLL+  AD +  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 86  LALGASKDWTNP-NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
           L  GA  D  N  ++D  T LH A +       E L+  G   N  ++ G T L  A + 
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN 190

Query: 145 GHTSQVCLLLKHK 157
           G    V LLL   
Sbjct: 191 GRIELVKLLLDKG 203

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG4412|consensus	226		100.0
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.96
KOG0509|consensus	600		99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0510|consensus	929		99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0508|consensus	615		99.96
KOG0508|consensus	615		99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0514|consensus	452		99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02743	166	Viral ankyrin protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG4177|consensus	1143		99.95
KOG0510|consensus	929		99.94
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0502|consensus	296		99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
KOG0502|consensus	296		99.91
KOG4177|consensus	1143		99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.9
KOG0512|consensus	228		99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
KOG0505|consensus	527		99.89
KOG0512|consensus	228		99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0195|consensus	448		99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
KOG0195|consensus	448		99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.85
KOG0507|consensus	854		99.83
KOG0505|consensus	527		99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.82
KOG0507|consensus	854		99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG4214|consensus	117		99.81
KOG3676|consensus	782		99.8
KOG0514|consensus	452		99.74
KOG3676|consensus	782		99.71
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.68
KOG4214|consensus	117		99.67
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.67
KOG4369|consensus	2131		99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.63
KOG1710|consensus	396		99.61
KOG1710|consensus	396		99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.58
KOG0515|consensus	752		99.58
KOG4369|consensus	2131		99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
KOG0515|consensus	752		99.46
KOG0818|consensus	669		99.44
KOG0783|consensus	1267		99.18
PF13606	30	Ank_3: Ankyrin repeat	99.14
KOG0818|consensus	669		99.14
PF13606	30	Ank_3: Ankyrin repeat	99.1
KOG0506|consensus	622		99.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.09
KOG0506|consensus	622		99.08
KOG0782|consensus	1004		99.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.99
KOG0782|consensus	1004		98.98
KOG0783|consensus	1267		98.89
KOG0705|consensus	749		98.85
KOG0521|consensus	785		98.79
KOG0522|consensus	560		98.76
KOG0522|consensus	560		98.75
KOG0511|consensus	516		98.69
KOG0705|consensus	749		98.55
KOG2384|consensus	223		98.52
KOG3609|consensus	822		98.46
KOG0511|consensus	516		98.46
KOG0521|consensus	785		98.42
KOG3609|consensus	822		98.38
KOG2384|consensus	223		98.38
KOG0520|consensus	975		98.19
KOG2505|consensus	591		98.1
KOG0520|consensus	975		97.89
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.59
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.58
KOG2505|consensus	591		97.04
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.85
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.22
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.21
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.81
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.38
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.45

>KOG4412|consensus

Probab=100.00  E-value=8.8e-39  Score=203.13  Aligned_cols=156  Identities=23%  Similarity=0.228  Sum_probs=143.4

Q ss_pred             CCCCCC-CCchHHHHHHhcCChHHHHHHH-HcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           5 DDVSDL-SPELLLYRASTVHNLPVMCHAL-ALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         5 ~~~~~~-~g~~~l~~A~~~g~~~~~~~ll-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      .++++. +|.|||||||..|+.+++.+|+ +.+..++.++.                     .|.+|||+|+..|+.+++
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd---------------------aGWtPlhia~s~g~~evV   88 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD---------------------AGWTPLHIAASNGNDEVV   88 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc---------------------cCCchhhhhhhcCcHHHH
Confidence            345555 8999999999999999999988 56677777766                     999999999999999999


Q ss_pred             HHHHHc-CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          83 CHALAL-GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        83 ~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +.|+.+ +++++..  +..|.|+||+|+..|..++.++|++.|+.++.+|.+|.||||-|+..|..+++++|+..|+.+|
T Consensus        89 k~Ll~r~~advna~--tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n  166 (226)
T KOG4412|consen   89 KELLNRSGADVNAT--TNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN  166 (226)
T ss_pred             HHHhcCCCCCccee--cCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC
Confidence            999988 8999886  7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHhCCcccc
Q psy6300         162 IVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       162 ~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      ..|+.|+||||.|...|+.+..
T Consensus       167 ~qDk~G~TpL~~al~e~~~d~a  188 (226)
T KOG4412|consen  167 TQDKYGFTPLHHALAEGHPDVA  188 (226)
T ss_pred             cccccCccHHHHHHhccCchHH
Confidence            9999999999999888887654

>KOG4412|consensus

Probab=100.00  E-value=1.7e-34  Score=183.69  Aligned_cols=151  Identities=28%  Similarity=0.241  Sum_probs=141.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      +..+|-+|..|+||||.||..|+.|+++.|+.+ |++++..+.                     .|.||||+|+..|+++
T Consensus        62 nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn---------------------~G~T~LHyAagK~r~e  120 (226)
T KOG4412|consen   62 NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN---------------------GGQTCLHYAAGKGRLE  120 (226)
T ss_pred             CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC---------------------CCcceehhhhcCChhh
Confidence            456788899999999999999999999999998 899988876                     9999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          81 VMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      ++++|++.|..+..+  |..|.||||.|+.-|.++++++|+..|+.+|..|.+|+||||.|..-++.+.+.+|++.|+++
T Consensus       121 IaqlLle~ga~i~~k--D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  121 IAQLLLEKGALIRIK--DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             HHHHHHhcCCCCccc--ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccce
Confidence            999999999888875  899999999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCCCCCCCcHHHHHHH
Q psy6300         161 HIVDSSGVEPLTLAVE  176 (185)
Q Consensus       161 ~~~~~~~~t~l~~A~~  176 (185)
                      ...|++| ||+..|+-
T Consensus       199 ~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  199 DREDKEG-TALRIACN  213 (226)
T ss_pred             eeccccC-chHHHHHH
Confidence            9999988 99887754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=206.71  Aligned_cols=182  Identities=23%  Similarity=0.203  Sum_probs=156.4

Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      .|++++..+..|.||||.|+..|+.+++++|++.|++++..+....++             +.+...+.......+..|.
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  103 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM  103 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC
Confidence            478999999999999999999999999999999999887765444332             1122222222233344789


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      +|||+|+..|+.+++++|++.|++++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.
T Consensus       104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~--~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~  181 (413)
T PHA02875        104 TPLHLATILKKLDIMKLLIARGADPDIP--NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI  181 (413)
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999999875  78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCC-cHHHHHHHhCCccccc
Q psy6300         148 SQVCLLLKHKADQHIVDSSGV-EPLTLAVEKANADIVT  184 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~~~~~~  184 (185)
                      +++++|++.|++++..+..|. ||+++|+..++.++++
T Consensus       182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~  219 (413)
T PHA02875        182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR  219 (413)
T ss_pred             HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence            999999999999999888774 8899999999998876

>KOG0509|consensus

Probab=100.00  E-value=1.4e-32  Score=203.72  Aligned_cols=161  Identities=26%  Similarity=0.225  Sum_probs=151.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |.+++..|..|.|+||+||..++++++|+|+++|+++|....                    .-+.+|||||+++|++.+
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG--------------------~l~stPLHWAar~G~~~v  127 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG--------------------VLGSTPLHWAARNGHISV  127 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC--------------------CCCCCcchHHHHcCcHHH
Confidence            467788999999999999999999999999999999988752                    167799999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +..|+++|+|+..+  |.+|.+++|.|+..++..++-||+..|++++.+|..|+||||+|+..+....+..|++.|+.+.
T Consensus       128 v~lLlqhGAdpt~~--D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  128 VDLLLQHGADPTLK--DKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL  205 (600)
T ss_pred             HHHHHHcCCCCcee--cCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc
Confidence            99999999999987  9999999999999999999999999999999999999999999999998887999999999998


Q ss_pred             CCC-CCCCcHHHHHHHhCCccccc
Q psy6300         162 IVD-SSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       162 ~~~-~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .+| .+|.||||+|+..|+..+++
T Consensus       206 ~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  206 LTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             ccccccCCchHHHHHhcCCcceEe
Confidence            887 89999999999999998875

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.5e-32  Score=190.25  Aligned_cols=172  Identities=21%  Similarity=0.191  Sum_probs=143.4

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCC--------------cccCCCchhHHH
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN--------------DVSDLSPELLLY   71 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~   71 (185)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+.    .++++.+.....              ...+..|.||||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~----~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh   99 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLEN----EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCC----CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            56788999999999999999999999999998876532    234443332211              334558999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHhCCHHH
Q psy6300          72 RASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATELGHTSQ  149 (185)
Q Consensus        72 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~~  149 (185)
                      +|+..|+.+++++|++.+++++.+  +..| .||||.|+..|+.+++++|++.+.+.  .| ..|.||||+|+..|+.++
T Consensus       100 ~Aa~~g~~eivk~Ll~~gadin~~--~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~ei  175 (284)
T PHA02791        100 YAVDSGNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDM  175 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHH
Confidence            999999999999999999988765  5666 48999999999999999999987543  23 357999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcH-HHHHHHhCCcccccC
Q psy6300         150 VCLLLKHKADQHIVDSSGVEP-LTLAVEKANADIVTL  185 (185)
Q Consensus       150 v~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~~~~~~~  185 (185)
                      +++|+++|++++.++..|.|| ||+|+..|+.+++++
T Consensus       176 v~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        176 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            999999999999999999977 999999999998863

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-31  Score=187.93  Aligned_cols=155  Identities=18%  Similarity=0.179  Sum_probs=111.0

Q ss_pred             cCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCC------------cccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300          22 VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN------------DVSDLSPELLLYRASTVHNLPVMCHALALG   89 (185)
Q Consensus        22 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~   89 (185)
                      .++.+++++|+++|++.  ++....+  .++++....+            ......+.+|||+|+..|+.+++++|+..|
T Consensus         9 ~~~~~~~~~Lis~~a~~--~D~~G~T--pLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~G   84 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK--ADVHGHS--ALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG   84 (284)
T ss_pred             cCHHHHHHHHHhCCCCC--CCCCCCc--HHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            35778999999998753  3333222  2222221111            111124678888888888888888888888


Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCC
Q psy6300          90 ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG-KTPLYLATELGHTSQVCLLLKHKADQHIVD-SSG  167 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~  167 (185)
                      ++++.+  |..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..++.+++++|++++.+.  .+ ..|
T Consensus        85 advn~~--d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g  160 (284)
T PHA02791         85 MDDSQF--DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAIL  160 (284)
T ss_pred             CCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccC
Confidence            887765  7778888888888888888888888888888777776 47888888888888888888876543  22 247


Q ss_pred             CcHHHHHHHhCCccccc
Q psy6300         168 VEPLTLAVEKANADIVT  184 (185)
Q Consensus       168 ~t~l~~A~~~~~~~~~~  184 (185)
                      .||||+|+..|+.++++
T Consensus       161 ~TpLh~Aa~~g~~eiv~  177 (284)
T PHA02791        161 LSCIHITIKNGHVDMMI  177 (284)
T ss_pred             ccHHHHHHHcCCHHHHH
Confidence            88888888888888765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.5e-31  Score=199.63  Aligned_cols=176  Identities=20%  Similarity=0.234  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchh---------------hHHhhccCCcccCCC
Q psy6300           1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTY---------------LHQAVIGVNDVSDLS   65 (185)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~   65 (185)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|++++.++....++-.               +...+.+.+...+..
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~  140 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEE  140 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCC
Confidence            37899999999999999999999999999999999999988766554422               222222333344568


Q ss_pred             chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          66 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGN--SVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        66 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      |.+||+ |+..++.++++.|++.|.+++..  |..|.||||.|+..+  ..+++++|++.|++++..|..|.||||+|+.
T Consensus       141 g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~--d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        141 GCGPLL-ACTDPSERVFKKIMSIGFEARIV--DKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             CCcHHH-HHHCCChHHHHHHHhcccccccc--CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            899997 55678999999999999998876  889999999988655  4689999999999999999999999999999


Q ss_pred             hC--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCc
Q psy6300         144 LG--HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA  180 (185)
Q Consensus       144 ~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  180 (185)
                      .+  +.+++++|+. |++++.++..|.||||+|+..++.
T Consensus       218 ~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        218 KTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             cCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCh
Confidence            76  7889999885 899999999999999999998874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7e-31  Score=200.24  Aligned_cols=180  Identities=24%  Similarity=0.228  Sum_probs=156.4

Q ss_pred             CCCCCCCCCCCchHHHHHH--hcCChHHHHHHHHcCCCCCCCCCCCCCc---------------hhhHHhhccCCcccCC
Q psy6300           2 VATDDVSDLSPELLLYRAS--TVHNLPVMCHALALGASKDWTNPNDDHR---------------TYLHQAVIGVNDVSDL   64 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~--~~g~~~~~~~ll~~g~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~   64 (185)
                      |++++..|..|.||||+|+  ..|+.+++++|++.|++++..+....++               +.+...+.+.+.. +.
T Consensus        96 ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~-d~  174 (480)
T PHA03100         96 GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK-NR  174 (480)
T ss_pred             CCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc-cC
Confidence            7889999999999999999  9999999999999999987776544332               1122222222233 33


Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC------ChHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCc
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH------RTYLHQAVIGNS--VMACEYLILNGLKINCPDAQGKT  136 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t  136 (185)
                      .|.+|||+|+..|+.+++++|+++|++++..  +..+      .+|||.|+..++  .+++++|++.|++++..|..|.|
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADINAG--DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCccCC--CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            8999999999999999999999999999875  5667      899999999999  99999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         137 PLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       137 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |||+|+..++.+++++|++.|++++.++..|.||+++|+..++.++++
T Consensus       253 pL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        253 PLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999988775

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=195.07  Aligned_cols=173  Identities=21%  Similarity=0.203  Sum_probs=142.7

Q ss_pred             CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhh---------------
Q psy6300           4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAV---------------   55 (185)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~---------------   55 (185)
                      ..+..+..|.||||.|+..|+.+++++|++.|++++..+....++             +++...+               
T Consensus        27 ~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  106 (434)
T PHA02874         27 CINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDM  106 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHH
Confidence            356677778888888888888888888888888887665443322             1111111               


Q ss_pred             --------ccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q psy6300          56 --------IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKI  127 (185)
Q Consensus        56 --------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  127 (185)
                              .+. ...+..|.+|||+|+..|+.+++++|++.|.+++..  +..|.||||+|+..++.+++++|++.|+++
T Consensus       107 i~~ll~~g~d~-n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~  183 (434)
T PHA02874        107 IKTILDCGIDV-NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE--DDNGCYPIHIAIKHNFFDIIKLLLEKGAYA  183 (434)
T ss_pred             HHHHHHCcCCC-CCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC
Confidence                    111 223447899999999999999999999999999875  788999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       128 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                      +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||.|+..+.
T Consensus       184 n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            9999999999999999999999999999999999999999999999998764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=196.60  Aligned_cols=153  Identities=24%  Similarity=0.202  Sum_probs=143.0

Q ss_pred             CCCCCCCCCCC-CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCH
Q psy6300           1 MVATDDVSDLS-PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNL   79 (185)
Q Consensus         1 ~~~~~~~~~~~-g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~   79 (185)
                      .|++++..+.. |.||||+|+..|+.+++++|++.|++++..+.                     .|.||||.|+..++.
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~---------------------~g~tpLh~A~~~~~~  214 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK---------------------TNNSPLHHAVKHYNK  214 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC---------------------CCCCHHHHHHHhCCH
Confidence            37899999999 99999999999999999999999999988877                     899999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCChHHHHHHhc-CCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          80 PVMCHALALGASKDWTNPNDDHRTYLHQAVIG-NSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      ++++.|++.|++++.+  |..|.||||+|+.. ++.+++++|++.|++++..+. .|.||||+|  .++.+++++|+++|
T Consensus       215 ~iv~~Ll~~ga~in~~--d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g  290 (477)
T PHA02878        215 PIVHILLENGASTDAR--DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYG  290 (477)
T ss_pred             HHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC
Confidence            9999999999999986  88999999999975 789999999999999998876 799999999  56789999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhC
Q psy6300         158 ADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       158 ~~~~~~~~~~~t~l~~A~~~~  178 (185)
                      +|++..+..|.|||++|+..+
T Consensus       291 adin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        291 ADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHHc
Confidence            999999999999999999864

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.8e-30  Score=195.83  Aligned_cols=120  Identities=26%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             CCCchhHHHHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCH--HHHHHHHHcCCCCCCCCCCCCcHH
Q psy6300          63 DLSPELLLYRASTV--HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSV--MACEYLILNGLKINCPDAQGKTPL  138 (185)
Q Consensus        63 ~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~g~~~~~~~~~~~t~l  138 (185)
                      +..|.+|||+++..  +...+++.|++.|++++.+  |..|.||||+|+..++.  .+++.|+..|++++..|..|.|||
T Consensus       184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~--d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpL  261 (471)
T PHA03095        184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT--DMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL  261 (471)
T ss_pred             CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCccc--CCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            44677777777654  5667788888888888775  77888888888888864  578888999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         139 YLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       139 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+|+..|+.+++++|++.|++++.++..|.|||++|+..|+.++++
T Consensus       262 h~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHH
Confidence            9999999999999999999999999999999999999999988765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.3e-30  Score=174.27  Aligned_cols=152  Identities=14%  Similarity=0.091  Sum_probs=127.2

Q ss_pred             CCCCCCCCchHHHHHHhcC--ChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCH
Q psy6300           5 DDVSDLSPELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNL   79 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g--~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~   79 (185)
                      .+..+..|.||||.|+..+  +.+++++|+++|++++..+.                    ..|.||||+|+..   ++.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~--------------------~~g~TpLh~a~~~~~~~~~  103 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTR--------------------DNNLSALHHYLSFNKNVEP  103 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCC--------------------CCCCCHHHHHHHhCccccH
Confidence            3456777888888887644  77888888888887776531                    1788999998754   468


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCChHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHHhCCHHHHHHHHhC
Q psy6300          80 PVMCHALALGASKDWTNPNDDHRTYLHQAVI--GNSVMACEYLILNGLKINCPDAQGKTPLYL-ATELGHTSQVCLLLKH  156 (185)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~-A~~~~~~~~v~~Ll~~  156 (185)
                      +++++|+++|++++..  |..|.||||.|+.  .++.+++++|++.|++++.+|..|.||||. |+..++.+++++|++.
T Consensus       104 eiv~~Ll~~gadin~~--d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        104 EILKILIDSGSSITEE--DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             HHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            9999999999999976  8899999999875  468999999999999999999999999996 5567889999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhC
Q psy6300         157 KADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       157 g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                      |++++.++..|.|||++|..++
T Consensus       182 Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        182 GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999998764

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-30  Score=197.79  Aligned_cols=178  Identities=24%  Similarity=0.209  Sum_probs=156.5

Q ss_pred             CCCCCCCCCCCchHHHH-----HHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhh-----------------ccCC
Q psy6300           2 VATDDVSDLSPELLLYR-----ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAV-----------------IGVN   59 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~-----A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~   59 (185)
                      |++++..+..+.||||.     |+..|+.+++++|++.|++++..+....+  +++.+.                 .+. 
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t--pL~~A~~~~~~~~~iv~~Ll~~g~~~-  134 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT--PLLYAISKKSNSYSIVEYLLDNGANV-  134 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc--hhhHHHhcccChHHHHHHHHHcCCCC-
Confidence            78999999999999999     99999999999999999998766544333  333333                 222 


Q ss_pred             cccCCCchhHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC---
Q psy6300          60 DVSDLSPELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG---  134 (185)
Q Consensus        60 ~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~---  134 (185)
                      ...+..|.+|||+|+..+  +.+++++|+++|++++..  +..|.||||.|+..|+.+++++|++.|++++..+..+   
T Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~--d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  212 (480)
T PHA03100        135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK--NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLF  212 (480)
T ss_pred             CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc--cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcH
Confidence            233458999999999999  999999999999999876  6789999999999999999999999999999988888   


Q ss_pred             ---CcHHHHHHHhCC--HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         135 ---KTPLYLATELGH--TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       135 ---~t~l~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                         .||||+|+..++  .+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus       213 ~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~  267 (480)
T PHA03100        213 TIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVK  267 (480)
T ss_pred             HHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence               899999999999  99999999999999999999999999999999988875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=190.40  Aligned_cols=180  Identities=20%  Similarity=0.174  Sum_probs=147.2

Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCC---------------------CCCCCCchhhHHhhccCC
Q psy6300           1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWT---------------------NPNDDHRTYLHQAVIGVN   59 (185)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~   59 (185)
                      .|++++..+..|.|||+.|+..|+.+++++|++.|+++...                     ..+....++++.+.....
T Consensus        57 ~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~  136 (434)
T PHA02874         57 HGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGD  136 (434)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCC
Confidence            37899999999999999999999999999999988664211                     112223334433332211


Q ss_pred             --------------cccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          60 --------------DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGL  125 (185)
Q Consensus        60 --------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~  125 (185)
                                    ...+..|.+|||+|+..++.+++++|++.|.+++..  +..|.||||.|+..|+.+++++|++.|+
T Consensus       137 ~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        137 LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK--DNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence                          233458999999999999999999999999998875  7889999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC-Cccccc
Q psy6300         126 KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA-NADIVT  184 (185)
Q Consensus       126 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~-~~~~~~  184 (185)
                      +++..+..|.||||.|+..+. +.+.+|+ .|++++.++..|.||||+|+..+ +.++++
T Consensus       215 ~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        215 HIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             CCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            999999999999999999765 5666665 68999999999999999999876 556654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.8e-30  Score=194.73  Aligned_cols=161  Identities=22%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhc---CChHHHHHHHHcCCCC-CCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc-
Q psy6300           2 VATDDVSDLSPELLLYRASTV---HNLPVMCHALALGASK-DWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV-   76 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-   76 (185)
                      ||+++.+|..|.|||+.|+..   ++.+++++|+++|+++ +.++.                     .|.||||+|+.. 
T Consensus        98 Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~---------------------~g~tpLh~a~~~~  156 (494)
T PHA02989         98 GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS---------------------RGYNLLHMYLESF  156 (494)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC---------------------CCCCHHHHHHHhc
Confidence            445555555555555544432   3445555555555555 33333                     555666555432 


Q ss_pred             -CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhc----CCHHHHHHHHHcCC--------------------------
Q psy6300          77 -HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG----NSVMACEYLILNGL--------------------------  125 (185)
Q Consensus        77 -~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~g~--------------------------  125 (185)
                       ++.++++.|+++|++++.. .+..|.||||.++..    ++.+++++|++.|+                          
T Consensus       157 ~~~~~iv~~Ll~~Gadi~~~-~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~  235 (494)
T PHA02989        157 SVKKDVIKILLSFGVNLFEK-TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKK  235 (494)
T ss_pred             cCCHHHHHHHHHcCCCcccc-ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhccc
Confidence             3455556666655555542 134555555555433    25555555555554                          


Q ss_pred             ------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         126 ------------KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       126 ------------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                                  +++..|..|.||||+|+..++.+++++|++.|+|++.++..|.|||++|+..++.++++
T Consensus       236 ~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        236 EFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             chHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence                        44555667999999999999999999999999999999999999999999999988775

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=193.68  Aligned_cols=181  Identities=19%  Similarity=0.149  Sum_probs=141.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhc-----CChHHHHHHHHcCCCCCCCCCCCCCchh----------------hHHhhccCCc
Q psy6300           2 VATDDVSDLSPELLLYRASTV-----HNLPVMCHALALGASKDWTNPNDDHRTY----------------LHQAVIGVND   60 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~-----g~~~~~~~ll~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~   60 (185)
                      |++++..|..|.||||.|+..     +..+++++|+++|++++..+..+.++-.                +...+.+. .
T Consensus        61 Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n  139 (489)
T PHA02798         61 GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-T  139 (489)
T ss_pred             CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-c
Confidence            788888888888888887753     6678888888888888877665444311                11122222 2


Q ss_pred             ccCCCchhHHHHHHhcCC---HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhc----CCHHHHHHHHHcCCC-------
Q psy6300          61 VSDLSPELLLYRASTVHN---LPVMCHALALGASKDWTNPNDDHRTYLHQAVIG----NSVMACEYLILNGLK-------  126 (185)
Q Consensus        61 ~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~g~~-------  126 (185)
                      ..+..|.+|||+|+..++   .+++++|++.|.+++... +..|.||+|.++..    ++.+++++|++.|++       
T Consensus       140 ~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~-~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~  218 (489)
T PHA02798        140 LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN-NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS  218 (489)
T ss_pred             ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc-CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence            233488999999998887   899999999999888651 34688999987654    467888888877654       


Q ss_pred             --------------------------------CCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy6300         127 --------------------------------INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA  174 (185)
Q Consensus       127 --------------------------------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A  174 (185)
                                                      +|..|..|.||||+|+.+++.+++++|++.|+|++.++..|.|||++|
T Consensus       219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        219 HKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA  298 (489)
T ss_pred             ccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHH
Confidence                                            444667799999999999999999999999999999999999999999


Q ss_pred             HHhCCccccc
Q psy6300         175 VEKANADIVT  184 (185)
Q Consensus       175 ~~~~~~~~~~  184 (185)
                      +..++.++++
T Consensus       299 ~~~~~~~iv~  308 (489)
T PHA02798        299 FENESKFIFN  308 (489)
T ss_pred             HHcCcHHHHH
Confidence            9999887764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-29  Score=188.92  Aligned_cols=171  Identities=25%  Similarity=0.249  Sum_probs=145.8

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHHHHhcCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYRASTVHN   78 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~   78 (185)
                      .+++|+.|+..|+.+++++|++.|++++..+....++             +++...+... ......+.+|||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCC
Confidence            4789999999999999999999999998876554443             1122222221 1223467899999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q psy6300          79 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA  158 (185)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  158 (185)
                      .+.++.|++.+...... .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|+
T Consensus        81 ~~~v~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         81 VKAVEELLDLGKFADDV-FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHHcCCccccc-ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999988766543 25679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         159 DQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       159 ~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++.++..|.||||+|+..|+.++++
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999998875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=192.58  Aligned_cols=178  Identities=17%  Similarity=0.083  Sum_probs=135.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-------------------------C-----------
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-------------------------D-----------   45 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-------------------------~-----------   45 (185)
                      |++++.+|..|.||||+||..|+.+++++|++.+.........                         .           
T Consensus        60 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~  139 (477)
T PHA02878         60 GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKK  139 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhc
Confidence            5677777777777777777777777777766654332210000                         0           


Q ss_pred             --------CCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHH
Q psy6300          46 --------DHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC  117 (185)
Q Consensus        46 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  117 (185)
                              +..+.+...+.+.+......|.+|||+|+..|+.+++++|++.|++++..  +..|.||||.|+..++.+++
T Consensus       140 ~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv  217 (477)
T PHA02878        140 SKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKPIV  217 (477)
T ss_pred             cchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHHHH
Confidence                    01122223333333444433899999999999999999999999998875  78899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHh-CCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHhCCcccc
Q psy6300         118 EYLILNGLKINCPDAQGKTPLYLATEL-GHTSQVCLLLKHKADQHIVDS-SGVEPLTLAVEKANADIV  183 (185)
Q Consensus       118 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~  183 (185)
                      ++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|.  ++.+++
T Consensus       218 ~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~~~~v  283 (477)
T PHA02878        218 HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KSERKL  283 (477)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cCHHHH
Confidence            999999999999999999999999976 688999999999999998876 7999999993  444444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.9e-29  Score=196.88  Aligned_cols=180  Identities=23%  Similarity=0.155  Sum_probs=143.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchh-------------------------------
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTY-------------------------------   50 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~-------------------------------   50 (185)
                      |++++.+|..|.||||.|+..|+.+++++|++.|++++..+....++-.                               
T Consensus       168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~a  247 (682)
T PHA02876        168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKA  247 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHH
Confidence            7899999999999999999999999999999999998876544332211                               


Q ss_pred             -----------hHHhhccCCcccCCCchhHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcC-CHHHH
Q psy6300          51 -----------LHQAVIGVNDVSDLSPELLLYRASTVHNL-PVMCHALALGASKDWTNPNDDHRTYLHQAVIGN-SVMAC  117 (185)
Q Consensus        51 -----------~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~  117 (185)
                                 +...+... ...+..|.||||+|+..++. .+++.|++.|.+++..  |..|.||||.|+..| ..+++
T Consensus       248 i~~~~~~~~~~Ll~~g~~v-n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v  324 (682)
T PHA02876        248 IRNEDLETSLLLYDAGFSV-NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENI  324 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHH
Confidence                       00111111 12233788999999998886 5788888999888875  788999999999888 58888


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHhC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         118 EYLILNGLKINCPDAQGKTPLYLATELG-HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       118 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.|+..|++++..|..|.||||+|+..+ ..+++.+|++.|++++.++..|.||||+|+..|+.++++
T Consensus       325 ~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~  392 (682)
T PHA02876        325 RTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIIN  392 (682)
T ss_pred             HHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHH
Confidence            8888888888888888888888888754 677888888888888888888888888888888877765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=184.20  Aligned_cols=150  Identities=21%  Similarity=0.083  Sum_probs=135.4

Q ss_pred             CCCCCCchHHHHHHh--cCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300           7 VSDLSPELLLYRAST--VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH   84 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~--~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   84 (185)
                      .++.+++|+||.|+.  .|+.+++++|+++|++++..                       .+.+|+|.|+..++.+++++
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~-----------------------~~~t~lh~A~~~~~~eIVk~  167 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI-----------------------ECLNAYFRGICKKESSVVEF  167 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC-----------------------CCCCHHHHHHHcCcHHHHHH
Confidence            577889999999999  89999999999999999874                       55689999999999999999


Q ss_pred             HHHcCCCCCCCCC----CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          85 ALALGASKDWTNP----NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        85 ll~~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      |+++|++......    +..+.+++|.+...+..+++++|++.|++++.+|..|.||||+|+..++.+++++|++.|+++
T Consensus       168 Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        168 ILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             HHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999975432210    123678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCC
Q psy6300         161 HIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       161 ~~~~~~~~t~l~~A~~~~~  179 (185)
                      +.++..|.||||+|+..|+
T Consensus       248 N~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        248 NAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.2e-29  Score=194.97  Aligned_cols=168  Identities=20%  Similarity=0.178  Sum_probs=126.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCCh--HHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc---------------CCcccCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNL--PVMCHALALGASKDWTNPNDDHRTYLHQAVIG---------------VNDVSDL   64 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~--~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~   64 (185)
                      |++++.+|..|.||||+|+..|+.  +++++|++.|++++.++....++  ++.....               .......
T Consensus       202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TP--Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~  279 (764)
T PHA02716        202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSP--IMTYIINIDNINPEITNIYIESLDGNKVK  279 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCH--HHHHHHhhhccCHHHHHHHHHhccccccc
Confidence            677777777788888888777753  77777778887777765544333  2211100               0000000


Q ss_pred             CchhHH---HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q psy6300          65 SPELLL---YRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI--GNSVMACEYLILNGLKINCPDAQGKTPLY  139 (185)
Q Consensus        65 ~~~~~l---~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  139 (185)
                      ....++   ..|+..|+.++++.|++.|++++.+  |..|+||||+|+.  .++.+++++|++.|++++.+|..|.||||
T Consensus       280 ~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        280 NIPMILHSYITLARNIDISVVYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence            111122   2367789999999999999999876  8899999998764  46789999999999999999999999999


Q ss_pred             HHHH--------------hCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300         140 LATE--------------LGHTSQVCLLLKHKADQHIVDSSGVEPLTL  173 (185)
Q Consensus       140 ~A~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  173 (185)
                      +|+.              .++.+++++|++.|++++.++..|.||||.
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence            9875              267899999999999999999999999994

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=4.7e-29  Score=194.06  Aligned_cols=152  Identities=14%  Similarity=0.039  Sum_probs=136.0

Q ss_pred             C-CCCCCC-CCCCchHHHHHHh--cCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcC
Q psy6300           2 V-ATDDVS-DLSPELLLYRAST--VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVH   77 (185)
Q Consensus         2 ~-~~~~~~-~~~g~~~l~~A~~--~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~   77 (185)
                      | ++++.. +..|.||||+|+.  .++.+++++|++.|++++.++.                     .|.||||+|++.|
T Consensus       165 G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~---------------------~G~TPLH~Aa~~g  223 (764)
T PHA02716        165 GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN---------------------HLITPLHTYLITG  223 (764)
T ss_pred             CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcC
Confidence            5 788888 8899999999864  4678999999999999998877                     8999999999998


Q ss_pred             C--HHHHHHHHHcCCCCCCCCCCCCCChHHHHH-------------------------------------HhcCCHHHHH
Q psy6300          78 N--LPVMCHALALGASKDWTNPNDDHRTYLHQA-------------------------------------VIGNSVMACE  118 (185)
Q Consensus        78 ~--~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a-------------------------------------~~~~~~~~~~  118 (185)
                      +  .++++.|++.|++++.+  +..|.||||.|                                     +..|+.++++
T Consensus       224 ~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVk  301 (764)
T PHA02716        224 NVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVY  301 (764)
T ss_pred             CCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHH
Confidence            5  48999999999999986  88999999965                                     3457788999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHH--hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         119 YLILNGLKINCPDAQGKTPLYLATE--LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       119 ~Ll~~g~~~~~~~~~~~t~l~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      +|++.|++++.+|..|+||||+|+.  .++.+++++|++.|++++.++..|.||||+|+.
T Consensus       302 lLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        302 SFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            9999999999999999999999875  457899999999999999999999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=186.22  Aligned_cols=180  Identities=20%  Similarity=0.102  Sum_probs=131.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhcC-ChHHHHHHHHcCCCCCCCCCCCCCch---------------hhHHhhccCCcccCCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVH-NLPVMCHALALGASKDWTNPNDDHRT---------------YLHQAVIGVNDVSDLS   65 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g-~~~~~~~ll~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~   65 (185)
                      |++++.++..|.||||+|+..| +.+++++|+++|++++.++....++-               .+...+.+.+ ..+..
T Consensus        73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~  151 (471)
T PHA03095         73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLY  151 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCC
Confidence            6777777777888888888887 47777888888877776665443331               1111222222 22336


Q ss_pred             chhHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          66 PELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG--NSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        66 ~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      |.+|||+++..+  ..++++.|++.|.+++..  +..|.||||.++..  +..++++.|++.|++++..|..|.||||+|
T Consensus       152 g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~A  229 (471)
T PHA03095        152 GMTPLAVLLKSRNANVELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM  229 (471)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            777777776654  467777777777777765  66788888877754  567788888888888888888888888888


Q ss_pred             HHhCCH--HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         142 TELGHT--SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       142 ~~~~~~--~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +..+..  .++..|++.|++++.++..|.||||+|+..|+.++++
T Consensus       230 a~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~  274 (471)
T PHA03095        230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACR  274 (471)
T ss_pred             HhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            888764  5778888889999999999999999999988887765

>KOG0509|consensus

Probab=99.96  E-value=2.8e-29  Score=186.33  Aligned_cols=153  Identities=24%  Similarity=0.222  Sum_probs=143.2

Q ss_pred             CCCCCCCC-CCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300           2 VATDDVSD-LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         2 ~~~~~~~~-~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      ||++|..+ ..+.||||+|++.|++.+++.|+++|++++.++.                     .|.+|+|.|+.+|+..
T Consensus       101 gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~---------------------~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen  101 GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDK---------------------QGLTPLHLAAQFGHTA  159 (600)
T ss_pred             CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecC---------------------CCCcHHHHHHHhCchH
Confidence            68888888 6699999999999999999999999999999988                     9999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          81 VMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      .+-+++.++.+++.+  |..|+|||++|+..|....+..|++-++.+...| ..|.||||+|+..|+..++++|++.|++
T Consensus       160 ~vayll~~~~d~d~~--D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  160 LVAYLLSKGADIDLR--DNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             HHHHHHHhcccCCCc--CCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            999999999999986  9999999999999999888999999999998888 8899999999999999999966677799


Q ss_pred             CCCCCCCCCcHHHHHHHh
Q psy6300         160 QHIVDSSGVEPLTLAVEK  177 (185)
Q Consensus       160 ~~~~~~~~~t~l~~A~~~  177 (185)
                      .+..+.+|+||+++|...
T Consensus       238 ~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  238 LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccCCCCHHHHHHHh
Confidence            999999999999999765

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=8.9e-28  Score=180.50  Aligned_cols=180  Identities=16%  Similarity=0.112  Sum_probs=143.9

Q ss_pred             CCCCCCCCCCCchHHHHHHhcC--ChHHHHHHHHcCCCCCCC-CCCCCCc------------hhhHHhhccCCcccCCCc
Q psy6300           2 VATDDVSDLSPELLLYRASTVH--NLPVMCHALALGASKDWT-NPNDDHR------------TYLHQAVIGVNDVSDLSP   66 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g--~~~~~~~ll~~g~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~   66 (185)
                      |++++.+|..|.||||+|+..+  ..+++++|++.|++++.. +....++            +.+...+.+. ...+..|
T Consensus        95 GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~-~~~d~~G  173 (446)
T PHA02946         95 GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEA-RIVDKFG  173 (446)
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccc-cccCCCC
Confidence            7899999999999999998866  479999999999998853 3333332            1222222333 3334589


Q ss_pred             hhHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy6300          67 ELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGN--SVMACEYLILNGLKINCPDAQGKTPLYLAT  142 (185)
Q Consensus        67 ~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~  142 (185)
                      .+|||+|+..+  +.+++++|++.|++++.+  |..|.||||+|+..+  +.+++++|+. |++++..|..|.||||+|+
T Consensus       174 ~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~--d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~  250 (446)
T PHA02946        174 KNHIHRHLMSDNPKASTISWMMKLGISPSKP--DHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLI  250 (446)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            99999987654  468999999999999976  889999999999876  7889999885 8999999999999999999


Q ss_pred             HhCC-HHHHHHHHhCCCCCCC--------------------C-CCCCCcHHHHHHHhCCcccccC
Q psy6300         143 ELGH-TSQVCLLLKHKADQHI--------------------V-DSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       143 ~~~~-~~~v~~Ll~~g~~~~~--------------------~-~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      ..++ .+++++|+..|++.+.                    . ...|.||||+|+..|+.+++++
T Consensus       251 ~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~  315 (446)
T PHA02946        251 KTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY  315 (446)
T ss_pred             HhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence            9987 4899999998865321                    1 2357799999999999998864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.9e-28  Score=164.57  Aligned_cols=150  Identities=15%  Similarity=0.065  Sum_probs=129.3

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcC--CHHHHHHHH
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVH--NLPVMCHAL   86 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll   86 (185)
                      -+.+.+||++|+..|++++++.|++..   +..+.                     .|.||||+|+..+  +.+++++|+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~---n~~~~---------------------~g~TpLh~a~~~~~~~~eiv~~Ll   73 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV---NDCND---------------------LYETPIFSCLEKDKVNVEILKFLI   73 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh---hccCc---------------------cCCCHHHHHHHcCCCCHHHHHHHH
Confidence            346789999999999999999998753   33333                     8899999998754  899999999


Q ss_pred             HcCCCCCCCCCC-CCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh--CCHHHHHHHHhCCCCC
Q psy6300          87 ALGASKDWTNPN-DDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATEL--GHTSQVCLLLKHKADQ  160 (185)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~--~~~~~v~~Ll~~g~~~  160 (185)
                      +.|++++..  + ..|.||||.|+..   ++.+++++|++.|++++..|..|.||||+|+..  ++.+++++|++.|+++
T Consensus        74 ~~gadvn~~--~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi  151 (209)
T PHA02859         74 ENGADVNFK--TRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF  151 (209)
T ss_pred             HCCCCCCcc--CCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            999999875  4 4799999998754   478999999999999999999999999999864  5799999999999999


Q ss_pred             CCCCCCCCcHHHH-HHHhCCccccc
Q psy6300         161 HIVDSSGVEPLTL-AVEKANADIVT  184 (185)
Q Consensus       161 ~~~~~~~~t~l~~-A~~~~~~~~~~  184 (185)
                      +.++..|.||||. |+..++.++++
T Consensus       152 n~~d~~g~t~Lh~~a~~~~~~~iv~  176 (209)
T PHA02859        152 LNKDFDNNNILYSYILFHSDKKIFD  176 (209)
T ss_pred             ccccCCCCcHHHHHHHhcCCHHHHH
Confidence            9999999999996 56667777664

>KOG0510|consensus

Probab=99.96  E-value=2.5e-28  Score=185.46  Aligned_cols=181  Identities=28%  Similarity=0.225  Sum_probs=143.9

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc---------------------------------
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR---------------------------------   48 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~---------------------------------   48 (185)
                      |++++..|+.+.||||.||..++.|..+.|++.|+++...+.+...+                                 
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n  223 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNN  223 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccC
Confidence            68999999999999999999999997788999999886655442222                                 


Q ss_pred             ---hhhHHhhccCC-----------------------------cccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q psy6300          49 ---TYLHQAVIGVN-----------------------------DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTN   96 (185)
Q Consensus        49 ---~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~   96 (185)
                         ++++.+....+                             ...+.+|.||||+|++.|+.+.+..|+..|++.+.+ 
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-  302 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-  302 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc-
Confidence               11111111100                             334558889999999999999999999999888876 


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---CCCCCCCcHH
Q psy6300          97 PNDDHRTYLHQAVIGNSVMACEYLIL-NG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH---IVDSSGVEPL  171 (185)
Q Consensus        97 ~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~~~t~l  171 (185)
                       +.++.||||.|+.+|++.+++.|++ .+ ..++..|-.|+||||.|+..|+..++++|++.|+...   ..|.+|.|||
T Consensus       303 -n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL  381 (929)
T KOG0510|consen  303 -NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL  381 (929)
T ss_pred             -CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhh
Confidence             6788899999999999999999988 55 4467788889999999999999999999999998876   4588999999


Q ss_pred             HHHHHhCCccccc
Q psy6300         172 TLAVEKANADIVT  184 (185)
Q Consensus       172 ~~A~~~~~~~~~~  184 (185)
                      |+|+..|+..+++
T Consensus       382 H~Aa~~g~~~av~  394 (929)
T KOG0510|consen  382 HLAAKYGNTSAVQ  394 (929)
T ss_pred             hHHHHhccHHHHH
Confidence            9999999887765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-27  Score=187.79  Aligned_cols=172  Identities=23%  Similarity=0.250  Sum_probs=111.1

Q ss_pred             CCCCCCCCCCCchHHHHHHhcC-ChHHHHHHHHcCCCCCCCCCCCCCchhhHHhh----------------ccCCcccCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVH-NLPVMCHALALGASKDWTNPNDDHRTYLHQAV----------------IGVNDVSDL   64 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g-~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~   64 (185)
                      |++++.+|..|.||||.|+..| +.++++.|+..|++++..+....+  +++...                .+. ...+.
T Consensus       297 gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~T--pLh~A~~~~~~~~iv~lLl~~gadi-n~~d~  373 (682)
T PHA02876        297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT--PLHQASTLDRNKDIVITLLELGANV-NARDY  373 (682)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCc--HHHHHHHhCCcHHHHHHHHHcCCCC-ccCCC
Confidence            4555555555666666666555 355555566665555544433222  222211                111 22334


Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS-VMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      .|.||||+|+..|+.+++++|++.|++++..  +..|.||||+|+..+. ..++++|++.|++++..|..|.||||+|+.
T Consensus       374 ~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~--~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        374 CDKTPIHYAAVRNNVVIINTLLDYGADIEAL--SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcccc--CCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence            6777777777777777777777777777664  5667777777765544 456777777777777777788888888877


Q ss_pred             hC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300         144 LG-HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       144 ~~-~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                      .+ ..+++++|++.|++++.++..|.||+++|+..+
T Consensus       452 ~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            65 567888888888888888888888888777643

>KOG0508|consensus

Probab=99.96  E-value=6.7e-29  Score=178.84  Aligned_cols=153  Identities=30%  Similarity=0.323  Sum_probs=142.1

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      ....|..||-.|+..||+++||.|+++|++++....                     -..+||..||.-|+++++++|++
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~---------------------TNStPLraACfDG~leivKyLvE  138 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR---------------------TNSTPLRAACFDGHLEIVKYLVE  138 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccc---------------------cCCccHHHHHhcchhHHHHHHHH
Confidence            355688899999999999999999999999987765                     45599999999999999999999


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG  167 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  167 (185)
                      +++|+++.  |..|.|.|++||..|+.+|+++|++.|+|+|.++..|.|+||.|++.|+.+++++|+++|+.+. ++..|
T Consensus       139 ~gad~~Ia--nrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~G  215 (615)
T KOG0508|consen  139 HGADPEIA--NRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHG  215 (615)
T ss_pred             cCCCCccc--ccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCC
Confidence            99999986  8999999999999999999999999999999999999999999999999999999999998875 47779


Q ss_pred             CcHHHHHHHhCCccccc
Q psy6300         168 VEPLTLAVEKANADIVT  184 (185)
Q Consensus       168 ~t~l~~A~~~~~~~~~~  184 (185)
                      .|||..|...|+.++|.
T Consensus       216 mtPL~~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVE  232 (615)
T ss_pred             CchHHHHhhhcchHHHH
Confidence            99999999999988875

>KOG0508|consensus

Probab=99.96  E-value=3.5e-29  Score=180.27  Aligned_cols=160  Identities=24%  Similarity=0.207  Sum_probs=142.2

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHH-cCCCCCCCC---CCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALA-LGASKDWTN---PNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMC   83 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   83 (185)
                      .+..|.|||..||+.|+.++++||++ .++++...-   .+.++.                .|..||-.|+-.|++++|+
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~I----------------egappLWaAsaAGHl~vVk  101 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETI----------------EGAPPLWAASAAGHLEVVK  101 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCccc----------------CCCchhhHHhccCcHHHHH
Confidence            34578899999999999999999998 666665432   222222                7778888888899999999


Q ss_pred             HHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCC
Q psy6300          84 HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIV  163 (185)
Q Consensus        84 ~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  163 (185)
                      .|+++|+++|..  .....|||..||.-|+.++++||+++|+|++..++.|.|+||+||..|+.+++++|++.|+|+|.+
T Consensus       102 ~L~~~ga~VN~t--T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~k  179 (615)
T KOG0508|consen  102 LLLRRGASVNDT--TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAK  179 (615)
T ss_pred             HHHHhcCccccc--cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchh
Confidence            999999999976  456779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhCCcccccC
Q psy6300         164 DSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       164 ~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      +..|.|+||.++.+|+.+++++
T Consensus       180 s~kGNTALH~caEsG~vdivq~  201 (615)
T KOG0508|consen  180 SYKGNTALHDCAESGSVDIVQL  201 (615)
T ss_pred             cccCchHHHhhhhcccHHHHHH
Confidence            9999999999999999999874

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.2e-27  Score=183.92  Aligned_cols=179  Identities=17%  Similarity=0.098  Sum_probs=142.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCC----------------ccc
Q psy6300           2 VATDDVSDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN----------------DVS   62 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~   62 (185)
                      +.+.+..|..|.||||+|+..   |+.+++++|++.|++++.++....  ++++.......                ...
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~--TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQL--TPLEEYTNSRHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCC--CHHHHHHHcCChhHHHHHHHHHHhccCCCC
Confidence            456677899999999998666   789999999999999986654444  34443332111                011


Q ss_pred             CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH--HhcCCHHHHHHHHHcCCCCCCCCC---CC---
Q psy6300          63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQA--VIGNSVMACEYLILNGLKINCPDA---QG---  134 (185)
Q Consensus        63 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~---~~---  134 (185)
                      ......++++|+..++.+++++|++.|++++.+  |..|.||||.+  +..|+.+++++|++.|++++..|.   .|   
T Consensus       100 ~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~--d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        100 INDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVK--CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             CCCcchHHHHHhhcCCHHHHHHHHHcCCCCCcc--CCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence            112336677889999999999999999999986  88999999954  357899999999999999986543   33   


Q ss_pred             --------CcHHHHHHH-----------hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCc--cccc
Q psy6300         135 --------KTPLYLATE-----------LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA--DIVT  184 (185)
Q Consensus       135 --------~t~l~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~--~~~~  184 (185)
                              .||||+|+.           .++.+++++|++.|++++.++..|.||||+|+.+|+.  ++++
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence                    599999986           4578999999999999999999999999999999986  4654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=182.24  Aligned_cols=171  Identities=18%  Similarity=0.180  Sum_probs=130.7

Q ss_pred             CCchHHHHHH--hcCChHHHHHHHHcCCCCCCCCCCCCCchh------------------hHHhhccCCcccCCCchhHH
Q psy6300          11 SPELLLYRAS--TVHNLPVMCHALALGASKDWTNPNDDHRTY------------------LHQAVIGVNDVSDLSPELLL   70 (185)
Q Consensus        11 ~g~~~l~~A~--~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~l   70 (185)
                      .+.|+++.+.  ..++.+++++|+++|++++..+....++-.                  +...+.+.+. .+..|.|||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~-~d~~G~TpL  113 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK-KNSDGETPL  113 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC-CCCCcCcHH
Confidence            4667665333  445889999999999999988776655422                  1122233333 344899999


Q ss_pred             HHHHhcC---CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC---HHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300          71 YRASTVH---NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS---VMACEYLILNGLKINCPD-AQGKTPLYLATE  143 (185)
Q Consensus        71 ~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~  143 (185)
                      |+|+..+   +.+++++|+++|++++..  |..|.||||.|+..++   .+++++|++.|++++..+ ..+.||||.++.
T Consensus       114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        114 YCLLSNGYINNLEILLFMIENGADTTLL--DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHHHHcCCcChHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHH
Confidence            9998765   678999999999999875  7889999999998887   899999999999998774 468899998876


Q ss_pred             hC----CHHHHHHHHhCCCCC---------------------------------------CCCCCCCCcHHHHHHHhCCc
Q psy6300         144 LG----HTSQVCLLLKHKADQ---------------------------------------HIVDSSGVEPLTLAVEKANA  180 (185)
Q Consensus       144 ~~----~~~~v~~Ll~~g~~~---------------------------------------~~~~~~~~t~l~~A~~~~~~  180 (185)
                      .+    +.+++++|+++|+++                                       |.++..|.||||+|+..++.
T Consensus       192 ~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~  271 (489)
T PHA02798        192 YNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR  271 (489)
T ss_pred             hccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH
Confidence            53    678888888777544                                       44566799999999999988


Q ss_pred             cccc
Q psy6300         181 DIVT  184 (185)
Q Consensus       181 ~~~~  184 (185)
                      ++++
T Consensus       272 ~~v~  275 (489)
T PHA02798        272 KIFE  275 (489)
T ss_pred             HHHH
Confidence            8765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=3.3e-27  Score=189.26  Aligned_cols=151  Identities=19%  Similarity=0.188  Sum_probs=121.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |+++|..|..|.||||.|+..|+.+++++|+++|++++.++.                     .|.||||+|+..|+.++
T Consensus       548 G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~---------------------~G~TpL~~A~~~g~~~i  606 (823)
T PLN03192        548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA---------------------NGNTALWNAISAKHHKI  606 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC---------------------CCCCHHHHHHHhCCHHH
Confidence            677888888888888888888888888888888888777766                     78888888888888888


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      ++.|+..+...+    ...+.++||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus       607 v~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        607 FRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            888887665443    2456678888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCC-CcHHHHHHHh
Q psy6300         162 IVDSSG-VEPLTLAVEK  177 (185)
Q Consensus       162 ~~~~~~-~t~l~~A~~~  177 (185)
                      ..+..| .||.+++...
T Consensus       683 ~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        683 KANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCCHHHHHHHH
Confidence            888777 7888777543

>KOG0514|consensus

Probab=99.95  E-value=3.1e-28  Score=170.27  Aligned_cols=158  Identities=25%  Similarity=0.269  Sum_probs=142.0

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcC-CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc-----
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV-----   76 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-----   76 (185)
                      +.+|+.|.+|+|+||+|+.++|+++|+.||+-| ++++..+.                     -|++|+.+++..     
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr---------------------AGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR---------------------AGYTPVMLAALAKLKQP  317 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCccccccccc---------------------ccccHHHHHHHHhhcch
Confidence            357899999999999999999999999999887 57777766                     999999987643     


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        77 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      .+..+|..|+..| ++|.+. ...|.|+|.+|+.+|..++++.|+..|+|+|..|.+|.|+|++|+++|+.+++++|+..
T Consensus       318 ~d~~vV~~LF~mg-nVNaKA-sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  318 ADRTVVERLFKMG-DVNAKA-SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhHHHHHHHHhcc-Ccchhh-hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            2457888999887 788774 36799999999999999999999999999999999999999999999999999999866


Q ss_pred             -CCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         157 -KADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       157 -g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                       ++|+...|.+|.|+|.+|...|+.||.
T Consensus       396 p~cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  396 PSCDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             CcccceeecCCCchhhhhHHhcCchHHH
Confidence             699999999999999999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.7e-27  Score=177.81  Aligned_cols=178  Identities=13%  Similarity=0.099  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCCchHHHHHHhc--CChHHHHHHHHcCCCCCCCCCCCCCc-------------------hhhHHhhccCCc
Q psy6300           2 VATDDVSDLSPELLLYRASTV--HNLPVMCHALALGASKDWTNPNDDHR-------------------TYLHQAVIGVND   60 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~--g~~~~~~~ll~~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~~   60 (185)
                      |+++|.. ..|.|||+.++..  ++.+++++|+++|++++.++.. .++                   +.+...+.+.+.
T Consensus        26 GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~-~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  103 (494)
T PHA02989         26 GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYI-ETPLCAVLRNREITSNKIKKIVKLLLKFGADINL  103 (494)
T ss_pred             CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCC-CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC
Confidence            7899988 5789998765544  3689999999999999876532 222                   112222333333


Q ss_pred             ccCCCchhHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCCCChHHHHHHhc--CCHHHHHHHHHcCCCCCC-CCCC
Q psy6300          61 VSDLSPELLLYRASTV---HNLPVMCHALALGASK-DWTNPNDDHRTYLHQAVIG--NSVMACEYLILNGLKINC-PDAQ  133 (185)
Q Consensus        61 ~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~g~~~~~-~~~~  133 (185)
                       .+..|.+|||.|+..   ++.+++++|+++|+++ +..  +..|.||||+|+..  ++.+++++|++.|++++. .+..
T Consensus       104 -~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~--d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~  180 (494)
T PHA02989        104 -KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK--NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY  180 (494)
T ss_pred             -CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccccc--CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc
Confidence             344899999987654   6789999999999999 554  78999999998754  688999999999999988 6788


Q ss_pred             CCcHHHHHHHhC----CHHHHHHHHhCCCCCCCC--------------------------------------CCCCCcHH
Q psy6300         134 GKTPLYLATELG----HTSQVCLLLKHKADQHIV--------------------------------------DSSGVEPL  171 (185)
Q Consensus       134 ~~t~l~~A~~~~----~~~~v~~Ll~~g~~~~~~--------------------------------------~~~~~t~l  171 (185)
                      |.||||+|+..+    +.+++++|++.|++++.+                                      +..|.|||
T Consensus       181 g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL  260 (494)
T PHA02989        181 GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPL  260 (494)
T ss_pred             CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHH
Confidence            999999998764    789999999998876543                                      45588999


Q ss_pred             HHHHHhCCccccc
Q psy6300         172 TLAVEKANADIVT  184 (185)
Q Consensus       172 ~~A~~~~~~~~~~  184 (185)
                      |+|+..++.++++
T Consensus       261 ~~Aa~~~~~~~v~  273 (494)
T PHA02989        261 LISAKVDNYEAFN  273 (494)
T ss_pred             HHHHHhcCHHHHH
Confidence            9999999888775

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=152.95  Aligned_cols=144  Identities=15%  Similarity=0.033  Sum_probs=126.9

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCCh----HHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNL----PVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVH   77 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~----~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~   77 (185)
                      ++++...+..+.++||.||+.|+.    +++++|++.|..++.++.                     .|++|||+|+..|
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~---------------------~g~t~Lh~Aa~~g   68 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH---------------------HGRQCTHMVAWYD   68 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC---------------------CCCcHHHHHHHhC
Confidence            355566778889999999999998    556677888888777666                     8999999999998


Q ss_pred             CHH---HHHHHHHcCCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy6300          78 NLP---VMCHALALGASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCL  152 (185)
Q Consensus        78 ~~~---~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~  152 (185)
                      +.+   ++++|+..|.+++.+  + ..|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++
T Consensus        69 ~~~~~~~i~~Ll~~Gadin~~--d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~  146 (166)
T PHA02743         69 RANAVMKIELLVNMGADINAR--ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEI  146 (166)
T ss_pred             ccCHHHHHHHHHHcCCCCCCC--CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            765   478999999999875  5 479999999999999999999995 799999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCC
Q psy6300         153 LLKHKADQHIVDSSGV  168 (185)
Q Consensus       153 Ll~~g~~~~~~~~~~~  168 (185)
                      |+++|++++.++..|.
T Consensus       147 Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        147 LRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHcCCCCCCcccCCc
Confidence            9999999999887765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=1.7e-26  Score=185.16  Aligned_cols=152  Identities=15%  Similarity=0.080  Sum_probs=140.2

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      .+..+.++|+.||..|+.++++.|++.|++++..+.                     .|.||||+|+..|+.++++.|++
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~---------------------~G~TpLh~Aa~~g~~~~v~~Ll~  579 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDS---------------------KGRTPLHIAASKGYEDCVLVLLK  579 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCCHHHHHHHcChHHHHHHHHh
Confidence            344567899999999999999999999999998877                     99999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG  167 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  167 (185)
                      +|++++.+  |.+|.||||.|+..|+.+++++|+..+...+.  ..+.++||.|+..|+.+++++|+++|++++.+|..|
T Consensus       580 ~gadin~~--d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G  655 (823)
T PLN03192        580 HACNVHIR--DANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG  655 (823)
T ss_pred             cCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999886  88999999999999999999999988766553  456799999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCccccc
Q psy6300         168 VEPLTLAVEKANADIVT  184 (185)
Q Consensus       168 ~t~l~~A~~~~~~~~~~  184 (185)
                      .||||+|+..|+.++++
T Consensus       656 ~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        656 ATALQVAMAEDHVDMVR  672 (823)
T ss_pred             CCHHHHHHHCCcHHHHH
Confidence            99999999999998876

>KOG4177|consensus

Probab=99.95  E-value=6e-27  Score=186.30  Aligned_cols=182  Identities=25%  Similarity=0.209  Sum_probs=152.9

Q ss_pred             CCCCCCCCCCCchHHHHHHhcC-ChHHHHHHHHcCCCCCCCCCCCCCchhhH------------HhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVH-NLPVMCHALALGASKDWTNPNDDHRTYLH------------QAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g-~~~~~~~ll~~g~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~   68 (185)
                      |++++..+..|.||+|.|+..| ..++...+++.|.+++.......++..+.            .............+-+
T Consensus       430 gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~  509 (1143)
T KOG4177|consen  430 GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLT  509 (1143)
T ss_pred             CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccc
Confidence            5778888888888888888888 66777778888888877665544432211            1111112333348889


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS  148 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  148 (185)
                      ++|.+...+....++.++++|....++  +..++||||.||..|+..+|++|+++|++++..++.|+||||.|+..|+.+
T Consensus       510 ~lhla~~~~~v~~~~~l~~~ga~v~~~--~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  510 PLHLAADEDTVKVAKILLEHGANVDLR--TGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             hhhhhhhhhhHHHHHHHhhcCCceehh--cccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence            999999999999999999999888876  788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      |+.+|+++|+++|..+.+|.|||++|++.|+.+++++
T Consensus       588 i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~  624 (1143)
T KOG4177|consen  588 IAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKL  624 (1143)
T ss_pred             HHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhH
Confidence            9999999999999999999999999999999988763

>KOG0510|consensus

Probab=99.94  E-value=1.4e-26  Score=176.09  Aligned_cols=147  Identities=22%  Similarity=0.174  Sum_probs=131.8

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      +..|.+|.||||+||+.|+.+.++.|+..|++++.++.                     ++.+|||.|+++|+++.++.|
T Consensus       267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~---------------------d~~spLH~AA~yg~~ntv~rL  325 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNK---------------------DEESPLHFAAIYGRINTVERL  325 (929)
T ss_pred             hcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCC---------------------CCCCchHHHHHcccHHHHHHH
Confidence            45788999999999999999999999999999999887                     899999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q psy6300          86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN---CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI  162 (185)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  162 (185)
                      ++..........|-.|.||||+|+..|+..+++.|++.|++..   ..|.+|.||||.|+..|+..+|++|+.+|+++..
T Consensus       326 L~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  326 LQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             HhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            9822222222247789999999999999999999999999876   4589999999999999999999999999999999


Q ss_pred             CCCCCCcHHHH
Q psy6300         163 VDSSGVEPLTL  173 (185)
Q Consensus       163 ~~~~~~t~l~~  173 (185)
                      ++..|.+++++
T Consensus       406 ~n~~g~SA~~~  416 (929)
T KOG0510|consen  406 KNKKGKSAFDT  416 (929)
T ss_pred             ccccccccccc
Confidence            99999998874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.8e-25  Score=168.33  Aligned_cols=179  Identities=11%  Similarity=0.070  Sum_probs=138.6

Q ss_pred             CCCCCCCCCCCchHHH--HHHhcCChHHHHHHHH--------------------------------cCCCCCC-------
Q psy6300           2 VATDDVSDLSPELLLY--RASTVHNLPVMCHALA--------------------------------LGASKDW-------   40 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~--~A~~~g~~~~~~~ll~--------------------------------~g~~~~~-------   40 (185)
                      ||+++.+|..|.||||  .|+..|+.|++++|++                                .|++...       
T Consensus       225 GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  304 (672)
T PHA02730        225 NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEG  304 (672)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhc
Confidence            8999999999999998  4667788999999999                                6766643       


Q ss_pred             -------------CCCCCCC-------------------------------------chhhHHhhccCCcccCCCchhHH
Q psy6300          41 -------------TNPNDDH-------------------------------------RTYLHQAVIGVNDVSDLSPELLL   70 (185)
Q Consensus        41 -------------~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~l   70 (185)
                                   .+.....                                     .+.|...+.+.+. + ..|.|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k-~~G~TpL  382 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-T-TDNNYPL  382 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-C-CCCCcHH
Confidence                         1111111                                     0122233334443 3 4889999


Q ss_pred             HHHHhcCC----HHHHHHHHHcCCC--CCCCCCCCCCChHHHH---HHhcC---------CHHHHHHHHHcCCCCCCCCC
Q psy6300          71 YRASTVHN----LPVMCHALALGAS--KDWTNPNDDHRTYLHQ---AVIGN---------SVMACEYLILNGLKINCPDA  132 (185)
Q Consensus        71 ~~a~~~~~----~~~~~~ll~~~~~--~~~~~~~~~~~~~l~~---a~~~~---------~~~~~~~Ll~~g~~~~~~~~  132 (185)
                      |+|+..+.    .+++++|+++|++  .+.+  |..|.||||.   +...+         ..+++++|+..|++++.+|.
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~k--d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~  460 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHMAINHV--SNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDN  460 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCcccccc--ccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCC
Confidence            99988774    7999999999874  5544  7889999984   33222         23569999999999999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHh--CCccccc
Q psy6300         133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDS-SGVEPLTLAVEK--ANADIVT  184 (185)
Q Consensus       133 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~A~~~--~~~~~~~  184 (185)
                      .|.||||+|+..++.+++++|+++|++++.++. .|.||++.|+..  ++.++++
T Consensus       461 ~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~  515 (672)
T PHA02730        461 ENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVD  515 (672)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHH
Confidence            999999999999999999999999999999997 599999999874  5555554

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=2.3e-24  Score=142.83  Aligned_cols=133  Identities=18%  Similarity=0.205  Sum_probs=116.5

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHc------CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALAL------GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN   78 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~   78 (185)
                      ++.++..|.||||+|+..|+.++++.|++.      |++++.++.                     .|.+|||+|+..|+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~---------------------~g~T~Lh~A~~~g~   72 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD---------------------AGQMCIHIAAEKHE   72 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC---------------------CCCcHHHHHHHcCC
Confidence            356788999999999999999999997543      455665555                     89999999999998


Q ss_pred             ----HHHHHHHHHcCCCCCCCCCCC-CCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy6300          79 ----LPVMCHALALGASKDWTNPND-DHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCL  152 (185)
Q Consensus        79 ----~~~~~~ll~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~  152 (185)
                          .+++++|++.|.+++.+  +. .|.||||+|+..++.+++++|+. .|++++..|..|.||||+|+..++.+++++
T Consensus        73 ~~~~~~ii~~Ll~~gadin~~--~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~  150 (169)
T PHA02741         73 AQLAAEIIDHLIELGADINAQ--EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQI  150 (169)
T ss_pred             hHHHHHHHHHHHHcCCCCCCC--CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHH
Confidence                58889999999998875  54 89999999999999999999997 599999999999999999999999999999


Q ss_pred             HHhCCCCC
Q psy6300         153 LLKHKADQ  160 (185)
Q Consensus       153 Ll~~g~~~  160 (185)
                      |++.++..
T Consensus       151 L~~~~~~~  158 (169)
T PHA02741        151 LREIVATS  158 (169)
T ss_pred             HHHHHHHh
Confidence            99887543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=7.9e-24  Score=165.13  Aligned_cols=173  Identities=15%  Similarity=0.050  Sum_probs=132.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChH----HHHHHHHcCCCCCCCCC-----------CCCCchhhHHhhccCCcccCCCc
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLP----VMCHALALGASKDWTNP-----------NDDHRTYLHQAVIGVNDVSDLSP   66 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~----~~~~ll~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~   66 (185)
                      |++++.++..|.||||+|+..|+.+    +++.|++.+...+..+.           ..+..++|...+.+.+..+. .|
T Consensus        58 ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~g  136 (661)
T PHA02917         58 GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-NH  136 (661)
T ss_pred             CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC-CC
Confidence            7899999999999999999999854    45678776543333221           11222444455555554444 89


Q ss_pred             hhHHHHH--HhcCCHHHHHHHHHcCCCCCCCC-CCCCC-----------ChHHHHHHh-----------cCCHHHHHHHH
Q psy6300          67 ELLLYRA--STVHNLPVMCHALALGASKDWTN-PNDDH-----------RTYLHQAVI-----------GNSVMACEYLI  121 (185)
Q Consensus        67 ~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~-~~~~~-----------~~~l~~a~~-----------~~~~~~~~~Ll  121 (185)
                      .|||+.+  +..|+.+++++|+++|++++... .+..|           .||||+|+.           .++.+++++|+
T Consensus       137 ~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li  216 (661)
T PHA02917        137 RSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLI  216 (661)
T ss_pred             ccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHH
Confidence            9999954  45789999999999999998541 12234           599999986           45889999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHhCCH--HHHHHHHhCCCCCC----CCCCCCCcHHHHHHH
Q psy6300         122 LNGLKINCPDAQGKTPLYLATELGHT--SQVCLLLKHKADQH----IVDSSGVEPLTLAVE  176 (185)
Q Consensus       122 ~~g~~~~~~~~~~~t~l~~A~~~~~~--~~v~~Ll~~g~~~~----~~~~~~~t~l~~A~~  176 (185)
                      +.|++++..|..|.||||+|+..++.  ++|++|++ |++.+    ..+..+.+|+++|+.
T Consensus       217 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        217 NHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             HCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHH
Confidence            99999999999999999999999985  79999975 88765    356678889999984

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.3e-23  Score=154.52  Aligned_cols=144  Identities=15%  Similarity=0.104  Sum_probs=123.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      ||+++..  .+.||+|.|+..++.+++++|+++|++......     .          +..+..+.+++|.+...+..++
T Consensus       141 GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~-----~----------~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        141 GAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVK-----L----------DLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             CCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc-----c----------hhhhhhccchhHHHHhcCHHHH
Confidence            7888874  458999999999999999999999985422110     0          0000146688999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCC--------HHHHHHH
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH--------TSQVCLL  153 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~--------~~~v~~L  153 (185)
                      +++|+++|++++.+  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+        .+++++|
T Consensus       204 ve~LIs~GADIN~k--D~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelL  281 (437)
T PHA02795        204 YKLCIPYIEDINQL--DAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEIL  281 (437)
T ss_pred             HHHHHhCcCCcCcC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHH
Confidence            99999999999986  8899999999999999999999999999999999999999999999884        6899999


Q ss_pred             HhCCCCCCCCC
Q psy6300         154 LKHKADQHIVD  164 (185)
Q Consensus       154 l~~g~~~~~~~  164 (185)
                      +++|++++...
T Consensus       282 L~~gadI~~~~  292 (437)
T PHA02795        282 LREPLSIDCIK  292 (437)
T ss_pred             HhCCCCCCchh
Confidence            99999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=5.9e-24  Score=169.49  Aligned_cols=177  Identities=19%  Similarity=0.086  Sum_probs=138.5

Q ss_pred             CCCCCCCCCCCchHHH-HHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc-----------------------
Q psy6300           2 VATDDVSDLSPELLLY-RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG-----------------------   57 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~-~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------   57 (185)
                      ++++|..|..|.|||| .|+..++.++++.|++.|+    .+  ..+.+.++.....                       
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~--~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RG--AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC--CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            4678889999999999 8888899999999999986    11  1222233322210                       


Q ss_pred             ----CCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCC------------CCCCChHHHHHHhcCCHHHHHHHH
Q psy6300          58 ----VNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNP------------NDDHRTYLHQAVIGNSVMACEYLI  121 (185)
Q Consensus        58 ----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~------------~~~~~~~l~~a~~~~~~~~~~~Ll  121 (185)
                          ........|.||||+|+..|+.++++.|+++|++++....            ...|.+|||.|+..++.+++++|+
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl  195 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS  195 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHh
Confidence                0011234689999999999999999999999999885311            135889999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHhC---------CHHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300         122 LNGLKINCPDAQGKTPLYLATELG---------HTSQVCLLLKHKADQ-------HIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       122 ~~g~~~~~~~~~~~t~l~~A~~~~---------~~~~v~~Ll~~g~~~-------~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.|++++..|..|+||||+|+..+         ...+.++++..+++.       +..|.+|.|||++|+..|+.++++
T Consensus       196 ~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       196 EDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             cCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            999999999999999999999986         234556666555443       567899999999999999998875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=9.2e-24  Score=139.94  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=106.1

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHc------CCCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCC-C
Q psy6300          65 SPELLLYRASTVHNLPVMCHALAL------GASKDWTNPNDDHRTYLHQAVIGNS----VMACEYLILNGLKINCPDA-Q  133 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~-~  133 (185)
                      .|.++||+|++.|+.++++.++..      +.+++.+  |..|.||||+|+..|+    .+++++|+..|++++..+. .
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            889999999999999999988542      3555554  8899999999999998    5889999999999999885 8


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         134 GKTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       134 ~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |.||||+|+..++.+++++|+. .|++++.++..|+|||++|+..++.++++
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999997 59999999999999999999999987765

>KOG0502|consensus

Probab=99.91  E-value=9.1e-25  Score=143.63  Aligned_cols=154  Identities=25%  Similarity=0.161  Sum_probs=131.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +++.|-.+--+++|+.+++..-+++++-.+.+.  .++..+.                     .|.|||.||+..|++++
T Consensus       119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De---------------------~GfTpLiWAaa~G~i~v  175 (296)
T KOG0502|consen  119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDE---------------------FGFTPLIWAAAKGHIPV  175 (296)
T ss_pred             cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccc---------------------cCchHhHHHHhcCchHH
Confidence            466777777889999999988777666555544  3444554                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +++|++.|+++...  .....++|.+|+..|..++++.|+.++.++|.-|..|.|||-+|+..++.+|++.|+..|++++
T Consensus       176 V~fLL~~GAdp~~l--gk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  176 VQFLLNSGADPDAL--GKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT  253 (296)
T ss_pred             HHHHHHcCCChhhh--hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence            99999999999875  5566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHhCCc
Q psy6300         162 IVDSSGVEPLTLAVEKANA  180 (185)
Q Consensus       162 ~~~~~~~t~l~~A~~~~~~  180 (185)
                      .-+..|.+++++|+..|+-
T Consensus       254 ~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  254 QEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             cccccCCcHHHHHHHhhhH
Confidence            9889999999999998865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4e-23  Score=146.43  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=118.7

Q ss_pred             CCCCCCch-HHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           7 VSDLSPEL-LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         7 ~~~~~g~~-~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      .+|..|.+ +|+.|+..|+.+++++|+++|++++.++.                 ..+..|.+|||+|+..++.+++++|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~-----------------~sd~~g~TpLh~Aa~~~~~eivklL   89 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP-----------------LSENSKTNPLIYAIDCDNDDAAKLL   89 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc-----------------ccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45666666 56777788999999999999999987631                 0011789999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Q psy6300          86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS  165 (185)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  165 (185)
                      +++|++++... +..|.||||.|+..++.+++++|+..|++++..|..|.||||+|+..++..++.++.  |..   .+.
T Consensus        90 L~~GADVN~~~-~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~  163 (300)
T PHA02884         90 IRYGADVNRYA-EEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISN  163 (300)
T ss_pred             HHcCCCcCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccc
Confidence            99999999741 357999999999999999999999999999999999999999999988888876664  322   345


Q ss_pred             CCCcHHHHH
Q psy6300         166 SGVEPLTLA  174 (185)
Q Consensus       166 ~~~t~l~~A  174 (185)
                      .+.+|++++
T Consensus       164 ~~~~~~~~~  172 (300)
T PHA02884        164 FYKHPKKIL  172 (300)
T ss_pred             cccChhhhh
Confidence            556777654

>KOG0502|consensus

Probab=99.91  E-value=8.3e-24  Score=139.14  Aligned_cols=146  Identities=24%  Similarity=0.146  Sum_probs=132.9

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      ..+|..|+.|.|||.||+.+|+++++++|++-|++++....                     ...++|.+|++.|..+++
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk---------------------~resALsLAt~ggytdiV  209 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK---------------------YRESALSLATRGGYTDIV  209 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh---------------------hhhhhHhHHhcCChHHHH
Confidence            45788999999999999999999999999999999987765                     777999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q psy6300          83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI  162 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  162 (185)
                      +.|++++.++|.-  |..|-|||.+|++.++.+|++.|+..|++++..+..|.+++-.|+..|+- +|+..+++-+.+..
T Consensus       210 ~lLL~r~vdVNvy--DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~  286 (296)
T KOG0502|consen  210 ELLLTREVDVNVY--DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLC  286 (296)
T ss_pred             HHHHhcCCCccee--ccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHh
Confidence            9999999999976  78899999999999999999999999999999999999999999999986 88888888777777


Q ss_pred             CCCCCCcHHH
Q psy6300         163 VDSSGVEPLT  172 (185)
Q Consensus       163 ~~~~~~t~l~  172 (185)
                      ++..-.+|+|
T Consensus       287 Q~~~~~~~~~  296 (296)
T KOG0502|consen  287 QDSEKRTPLH  296 (296)
T ss_pred             hcccCCCCCC
Confidence            7777777754

>KOG4177|consensus

Probab=99.91  E-value=2.6e-24  Score=171.43  Aligned_cols=180  Identities=23%  Similarity=0.182  Sum_probs=155.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhH--------------HhhccCCcccCCCch
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLH--------------QAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~   67 (185)
                      |++++.+...|.||||.|+..++..+++.++++|++++..+....++-...              ..+... ......|.
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~  475 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGF  475 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccC
Confidence            678999999999999999999999999999999999988877664442221              111222 23334899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      ||||.|+..|+.+.+..+++.+...+..  ...+-+++|.+...+...+++.++..|++++..+..+.||||.|+..|+.
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~--~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v  553 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLD--AKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV  553 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCcc--chhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc
Confidence            9999999999999999999888666654  46788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .+|++|+++|+|++.++..|+||||.|+..|+.+|+.
T Consensus       554 ~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  554 DLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAE  590 (1143)
T ss_pred             hHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHH
Confidence            9999999999999999999999999999999999875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=2e-23  Score=136.44  Aligned_cols=138  Identities=18%  Similarity=0.088  Sum_probs=108.1

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH---HH
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP---VM   82 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~   82 (185)
                      +..|..|.||||+|++.|+.+  ..+...+...+..       ..+..       ..+..|.+|||+|+..|+.+   ++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~-------~~~~~-------~~d~~g~t~Lh~a~~~~~~~~~e~v   74 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDEN-------RYLVL-------EYNRHGKQCVHIVSNPDKADPQEKL   74 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchh-------HHHHH-------HhcCCCCEEEEeecccCchhHHHHH
Confidence            356788999999999999843  2322222111110       00000       11228999999999999874   67


Q ss_pred             HHHHHcCCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          83 CHALALGASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      ++|++.|.+++.+  + ..|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+++|++.
T Consensus        75 ~~Ll~~gadin~~--~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         75 KLLMEWGADINGK--ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHcCCCcccc--CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            8899999999875  5 479999999999999999999997 48999999999999999999999999999999999886


Q ss_pred             C
Q psy6300         161 H  161 (185)
Q Consensus       161 ~  161 (185)
                      +
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            4

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=6.6e-23  Score=145.33  Aligned_cols=119  Identities=25%  Similarity=0.287  Sum_probs=106.2

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCC--CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNP--NDDHRTYLHQAVIGNSVMACEYLILNGLKINCP-DAQGKTPLYLA  141 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~~~t~l~~A  141 (185)
                      ...++|+.|++.|+.++++.|+++|++++....  +..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~A  111 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYIS  111 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHH
Confidence            444667888888999999999999999987521  357999999999999999999999999999986 45799999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       142 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      +..++.+++++|+..|++++.++..|.|||++|+..++.+++
T Consensus       112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHH
Confidence            999999999999999999999999999999999988766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=138.58  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=104.0

Q ss_pred             CchhHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCCc
Q psy6300          65 SPELLLYRASTVHNL----PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVM---ACEYLILNGLKINCPD-AQGKT  136 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~Ll~~g~~~~~~~-~~~~t  136 (185)
                      .+.++||.|++.|++    ++++++.+.+...+..  |..|+||||+|+..|..+   ++++|+..|++++..+ ..|.|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            677889999999998    4555667778777654  788999999999998765   4899999999999988 58999


Q ss_pred             HHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         137 PLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       137 ~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |||+|+..++.+++++|+. .|++++.++..|.||||+|+..++.++++
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999995 79999999999999999999999988765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.7e-23  Score=158.34  Aligned_cols=179  Identities=11%  Similarity=0.011  Sum_probs=132.9

Q ss_pred             CCC-CCCCCCchHHHHHHhcC---ChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccC--------------C----cc
Q psy6300           4 TDD-VSDLSPELLLYRASTVH---NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGV--------------N----DV   61 (185)
Q Consensus         4 ~~~-~~~~~g~~~l~~A~~~g---~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~----~~   61 (185)
                      +++ .+|..|.||||+|+..|   +.+++++|+++|++++.++..+.+|  |+.+....              .    ..
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TP--Lh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTP--LGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCCh--HHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            344 67888999999999997   4899999999999999876544444  33221111              0    11


Q ss_pred             cCCCchhHHHHHHh--cCCHHHHHHHHH-cCCCCCCCC--CC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCC-------
Q psy6300          62 SDLSPELLLYRAST--VHNLPVMCHALA-LGASKDWTN--PN-DDHRTYLHQAVIGNSVMACEYLILNGLKIN-------  128 (185)
Q Consensus        62 ~~~~~~~~l~~a~~--~~~~~~~~~ll~-~~~~~~~~~--~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~-------  128 (185)
                      .+..+.+||+.++.  .++.+++++|+. .+.+++...  .+ ..|.+|++++...+..+++++|+++|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            33346778887766  788899999985 667776541  11 368899999999999999999999999985       


Q ss_pred             -CCCCCCCcHHHHHH------HhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH--HHHhCCccccc
Q psy6300         129 -CPDAQGKTPLYLAT------ELGHTSQVCLLLKHKADQHIVDSSGVEPLTL--AVEKANADIVT  184 (185)
Q Consensus       129 -~~~~~~~t~l~~A~------~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~--A~~~~~~~~~~  184 (185)
                       ..+..+.|.||++.      ..+..+++++|+++|+++|.++..|+||||+  +...++.|+++
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~  254 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVK  254 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHH
Confidence             22233456666444      3467899999999999999999999999995  45556677765

>KOG0512|consensus

Probab=99.90  E-value=7.4e-23  Score=129.99  Aligned_cols=145  Identities=22%  Similarity=0.196  Sum_probs=127.6

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCC-CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGAS-KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      ..-.+.+|+..+.++.|+.|++..++ ++.++.                     ++.||||-|+..|+++++..|+..|+
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~---------------------D~YTpLHRAaYn~h~div~~ll~~gA  121 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDE---------------------DEYTPLHRAAYNGHLDIVHELLLSGA  121 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcccccccccc---------------------ccccHHHHHHhcCchHHHHHHHHccC
Confidence            33467899999999999999988775 566666                     99999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH-HHHHHHHhC-CCCCCCCCCCCC
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT-SQVCLLLKH-KADQHIVDSSGV  168 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~~~  168 (185)
                      +++.+  ...|+||||.||..++.+++.+|++.|+++|+......||||.|+...+. ..+.+|+.. +.++..++..++
T Consensus       122 n~~a~--T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~ee  199 (228)
T KOG0512|consen  122 NKEAK--TNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEE  199 (228)
T ss_pred             Ccccc--cccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccc
Confidence            99876  68999999999999999999999999999999999999999999987654 566777654 588888899999


Q ss_pred             cHHHHHHHhCC
Q psy6300         169 EPLTLAVEKAN  179 (185)
Q Consensus       169 t~l~~A~~~~~  179 (185)
                      ||+.+|.+.+.
T Consensus       200 ta~~iARRT~~  210 (228)
T KOG0512|consen  200 TAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHHhhh
Confidence            99999998764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=7.9e-22  Score=150.32  Aligned_cols=109  Identities=18%  Similarity=0.085  Sum_probs=97.5

Q ss_pred             chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC--CChHHHHHHhcCCH---HHHHHHHHcCCCCCCCCCCCCcHHHH
Q psy6300          66 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDD--HRTYLHQAVIGNSV---MACEYLILNGLKINCPDAQGKTPLYL  140 (185)
Q Consensus        66 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~~~~t~l~~  140 (185)
                      ....++.|+..|+.+++++|+++|++++.+  |..  +.||||.|+.....   +++++|++.|+++|.+|..|.||||+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~k--D~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~  416 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVED--DDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYY  416 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhh--cCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHH
Confidence            456788999999999999999999999875  544  56999988776654   46888999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         141 ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       141 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      |+..++.+++++|+++|++++.++..|.||+++|..
T Consensus       417 Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        417 CIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999975

>KOG0505|consensus

Probab=99.89  E-value=4.9e-23  Score=150.60  Aligned_cols=154  Identities=23%  Similarity=0.220  Sum_probs=134.1

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |+.++..+.+|.|+||.+|.-.+.+++++|+++|++++..+.                     .+++|+|.|+..|++.+
T Consensus        63 ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~---------------------e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   63 GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN---------------------EGWTPLHAAASCGYLNI  121 (527)
T ss_pred             CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc---------------------ccCCcchhhcccccHHH
Confidence            467788899999999999999999999999999999988776                     78888888888888888


Q ss_pred             HHHHHHcCCCCCCC---------------------------------------------------------CCCCCCChH
Q psy6300          82 MCHALALGASKDWT---------------------------------------------------------NPNDDHRTY  104 (185)
Q Consensus        82 ~~~ll~~~~~~~~~---------------------------------------------------------~~~~~~~~~  104 (185)
                      +++++..|+++...                                                         .++..|.|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            88888776555211                                                         113358899


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       105 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      ||.|+..|..++.++|+..|.+++..|.+|+||||.|+.++..+++++|+++|++.+.....|+||+++|..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998865

>KOG0512|consensus

Probab=99.88  E-value=3.4e-22  Score=127.01  Aligned_cols=114  Identities=27%  Similarity=0.282  Sum_probs=103.1

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      +....+.+|+..+.+..|+.|++..++.--. +|.+++||||.|+.+|+.+|++.|+..|++.+++...|+||||.||.+
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNt-rD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNT-RDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccc-cccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc
Confidence            5556688999999999999998765544322 489999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                      ++.+++..|+++|+|+|.......||||+|+...+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRN  175 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccc
Confidence            99999999999999999999999999999998765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.3e-22  Score=131.46  Aligned_cols=120  Identities=16%  Similarity=0.131  Sum_probs=97.7

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCCCChHHHHHHhcCCH---HHHHHHHHcCCCCCCCC-CCCCcH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKD---WTNPNDDHRTYLHQAVIGNSV---MACEYLILNGLKINCPD-AQGKTP  137 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~-~~~~t~  137 (185)
                      .|.||||+|++.|+...+..+.....+.+   ...+|..|.||||+|+..+..   +++++|+..|++++..+ ..|.||
T Consensus        16 ~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~   95 (154)
T PHA02736         16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTP   95 (154)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcH
Confidence            89999999999998432222222111111   111367899999999999986   46899999999999988 489999


Q ss_pred             HHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         138 LYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       138 l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ||+|+..++.+++++|+. .|++++.++..|.|||++|+..|+.++++
T Consensus        96 Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~  143 (154)
T PHA02736         96 LHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMN  143 (154)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999997 48999999999999999999999988765

>KOG0195|consensus

Probab=99.86  E-value=4.6e-22  Score=136.21  Aligned_cols=108  Identities=24%  Similarity=0.202  Sum_probs=102.9

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      -|.+|||+|++.|+..+++.|+.+|+.+|..  +.-..||||+|+..|+.++++.|++..+|+|+.+..|+|||||||.+
T Consensus        33 hgfsplhwaakegh~aivemll~rgarvn~t--nmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfw  110 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFW  110 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhh
Confidence            8899999999999999999999999999876  55667999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLA  174 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A  174 (185)
                      |...+++-|+..|+.++.-++.|.||++-|
T Consensus       111 gydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  111 GYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            999999999999999999999999999876

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=1.5e-20  Score=111.71  Aligned_cols=89  Identities=35%  Similarity=0.394  Sum_probs=80.9

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300          70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ  149 (185)
Q Consensus        70 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  149 (185)
                      ||+|++.|++++++++++.+.+.+.      |.+|||+|+..|+.+++++|++.|++++..|..|.||||+|+.+++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            7899999999999999998866642      7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC
Q psy6300         150 VCLLLKHKADQHIVD  164 (185)
Q Consensus       150 v~~Ll~~g~~~~~~~  164 (185)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=2.1e-20  Score=149.30  Aligned_cols=167  Identities=23%  Similarity=0.179  Sum_probs=125.0

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHc--CCCCCCCCCCCCCchhhH-HhhccCC----------cccCCCchhHHHHHHh
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALAL--GASKDWTNPNDDHRTYLH-QAVIGVN----------DVSDLSPELLLYRAST   75 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~--g~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~l~~a~~   75 (185)
                      =..++..|+.|+..|+.+.++.+++.  +.+++..+..+.+  .++ .+.....          ...+..|.+|||.|+.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t--~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRS--ALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISL   91 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchh--HHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHh
Confidence            34578899999999999999999998  7777766654443  444 2221111          1135589999999986


Q ss_pred             cCCHHHHH----HHHHcCCC------CC--CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC------------
Q psy6300          76 VHNLPVMC----HALALGAS------KD--WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD------------  131 (185)
Q Consensus        76 ~~~~~~~~----~ll~~~~~------~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~------------  131 (185)
                       +..+.++    .+...+.+      .+  .......|.||||+|+..|+.+++++|++.|++++..+            
T Consensus        92 -~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        92 -EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             -ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence             3333333    33332211      00  01112469999999999999999999999999998643            


Q ss_pred             --CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300         132 --AQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       132 --~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                        ..|.||||.|+..++.+++++|++.|+|++.++..|+||||+|+..+
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence              25889999999999999999999999999999999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195|consensus

Probab=99.85  E-value=1.2e-20  Score=129.39  Aligned_cols=118  Identities=24%  Similarity=0.137  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      .|.|..|..|.+|||+||+.|+..+++.|+..|+.++..+.                     ...+|||+|+..|+.+++
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm---------------------gddtplhlaaahghrdiv   83 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM---------------------GDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC---------------------CCCcchhhhhhcccHHHH
Confidence            46789999999999999999999999999999999998876                     556999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      +.|+.+.+|+|..  +..|.||||+||..|.-.+++-|+.+|+.++.-++.|.|||..|--
T Consensus        84 qkll~~kadvnav--nehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   84 QKLLSRKADVNAV--NEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHHHhcccchh--hccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            9999999999987  8899999999999999999999999999999999999999987743

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.85  E-value=2e-19  Score=113.21  Aligned_cols=123  Identities=28%  Similarity=0.279  Sum_probs=80.0

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      .+..|.|||+.|+..++.+++++|++.+...+..+.                     .|.+|+|.|+..++.+.+++++.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~---------------------~g~~~l~~a~~~~~~~~~~~ll~   61 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN---------------------DGRTPLHLAAKNGHLEIVKLLLE   61 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC---------------------CCCcHHHHHHHcCCHHHHHHHHH
Confidence            445666777777777777777777766665543333                     66666777766666666666666


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      .+...+..  +..+.+|+|.|+..++.+++++|+..+.+++..+..+.||+++|...+..+++++|
T Consensus        62 ~~~~~~~~--~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          62 KGADVNAR--DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCCCcccc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            66544443  45566677776666666677777666666666666666777776666666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507|consensus

Probab=99.83  E-value=8.8e-21  Score=143.86  Aligned_cols=158  Identities=22%  Similarity=0.143  Sum_probs=140.9

Q ss_pred             CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHH
Q psy6300           4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMC   83 (185)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   83 (185)
                      +.+.+|.+|.|.||.|+..|+.++++.|++..+-++..+.                     .|..|||+|++.|+.++++
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~---------------------kg~~plhlaaw~g~~e~vk   99 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT---------------------KGILPLHLAAWNGNLEIVK   99 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc---------------------cCcceEEehhhcCcchHHH
Confidence            4578899999999999999999999999999887777665                     8999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---
Q psy6300          84 HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ---  160 (185)
Q Consensus        84 ~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~---  160 (185)
                      .++.++..+|..  +..|.+|||.++..|+.+++++|++.+++.-..+..+.|+|-.|++.|..+++..|++...+.   
T Consensus       100 mll~q~d~~na~--~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~  177 (854)
T KOG0507|consen  100 MLLLQTDILNAV--NIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSS  177 (854)
T ss_pred             HHHhcccCCCcc--cccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhc
Confidence            999998777765  688999999999999999999999999998888999999999999999999999998764332   


Q ss_pred             -----CCCCCCCCcHHHHHHHhCCccccc
Q psy6300         161 -----HIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       161 -----~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                           ..++-.+-+|+|+|.++|+.+|++
T Consensus       178 ~~~~~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  178 LRVGDIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             ccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence                 235567788999999999999875

>KOG0505|consensus

Probab=99.83  E-value=3.9e-20  Score=135.56  Aligned_cols=146  Identities=27%  Similarity=0.279  Sum_probs=131.8

Q ss_pred             HHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCC
Q psy6300          15 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDW   94 (185)
Q Consensus        15 ~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~   94 (185)
                      .+..||..|.++-++.|+..|++++..+.                     +|.|++|.+|...+.++|+++++++..++.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~---------------------DglTalhq~~id~~~e~v~~l~e~ga~Vn~  101 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNV---------------------DGLTALHQACIDDNLEMVKFLVENGANVNA  101 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCC---------------------ccchhHHHHHhcccHHHHHHHHHhcCCccc
Confidence            57889999999999999999998877777                     999999999999999999999999999998


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC---------------------------------------------
Q psy6300          95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC---------------------------------------------  129 (185)
Q Consensus        95 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~---------------------------------------------  129 (185)
                      .  |..++||+|.|+..|+..++.+|+..|+++..                                             
T Consensus       102 ~--d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~  179 (527)
T KOG0505|consen  102 Q--DNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD  179 (527)
T ss_pred             c--ccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH
Confidence            6  89999999999999999999999998655421                                             


Q ss_pred             --------------CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         130 --------------PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       130 --------------~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                                    .+..|.|.||.|+.+|..++.++|++.|.+++.+|.+|+||||.|+.=|+.+..
T Consensus       180 D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~  247 (527)
T KOG0505|consen  180 DARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDAC  247 (527)
T ss_pred             HHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHH
Confidence                          123589999999999999999999999999999999999999999988776654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=7.7e-19  Score=110.49  Aligned_cols=118  Identities=33%  Similarity=0.411  Sum_probs=109.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .|.+|||+|+..++.+.++++++.+.+.+..  +..|.+++|.|+..+..+++++|+..+.+++..+..+.||+|+|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            7899999999999999999999999876554  77899999999999999999999999988888889999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++.+++++|++.+.+.+..+..+.||+++|...++.++++
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  123 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVK  123 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999998887765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=2.4e-19  Score=136.91  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=124.4

Q ss_pred             CchHHHHHHhcCChHHHH--HHHHcCCCCCCCCCCCCCc-h-------------hhHHhhccCCcccCCCchhHHHH-HH
Q psy6300          12 PELLLYRASTVHNLPVMC--HALALGASKDWTNPNDDHR-T-------------YLHQAVIGVNDVSDLSPELLLYR-AS   74 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~--~ll~~g~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~l~~-a~   74 (185)
                      |.+.|+-.|..-+++.++  .|++.|++|-... +..++ .             .++..+.+. ...+.++.+++|+ |+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~~~~~~s   80 (631)
T PHA02792          3 NDKILYDSCKTFNIDACSAQSLIESGANPLYEY-DGETPLKAYVTKKNNNIKNDVVILLLSSV-DYKNINDFDIFEYLCS   80 (631)
T ss_pred             chhHHHhHhhccchhHHHHHHHHHcCCCccccc-CCCccHHHHHhhhhhhHHHHHHHHHHhCC-CcCccCCccHHHHHHH
Confidence            456677777777766653  4778888775422 12222 1             111111111 2233377778875 45


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHh-cCCHHHHHHHHHcCCCCC-------------------------
Q psy6300          75 TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLILNGLKIN-------------------------  128 (185)
Q Consensus        75 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~Ll~~g~~~~-------------------------  128 (185)
                      ..|+++++++|+++|++++.+  +..+.+++++|+. .++.+++++|++.|+++.                         
T Consensus        81 ~n~~lElvk~LI~~GAdvN~~--~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~  158 (631)
T PHA02792         81 DNIDIELLKLLISKGLEINSI--KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDE  158 (631)
T ss_pred             hcccHHHHHHHHHcCCCcccc--cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhh
Confidence            668899999999999999976  6678889899865 589999999999998732                         


Q ss_pred             -----------CCCCCCCcHHHHHHHhC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC--Cccccc
Q psy6300         129 -----------CPDAQGKTPLYLATELG-------HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA--NADIVT  184 (185)
Q Consensus       129 -----------~~~~~~~t~l~~A~~~~-------~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~--~~~~~~  184 (185)
                                 ..|..|+||||+|+..+       ..++++.|+.+|++++.++..|.||||+|+...  ..|+++
T Consensus       159 ~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~  234 (631)
T PHA02792        159 LDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFD  234 (631)
T ss_pred             ccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHH
Confidence                       23456999999999999       899999999999999999999999999999998  556554

>KOG0507|consensus

Probab=99.81  E-value=6.3e-20  Score=139.30  Aligned_cols=161  Identities=23%  Similarity=0.199  Sum_probs=136.0

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD   93 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   93 (185)
                      +=+..|++.|+.+.+..|++..-.        +..-.+..-.......++.+|.|.||.|+..|+..++..+++...-..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~--------r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld   76 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKG--------RSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD   76 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCC--------CCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh
Confidence            457789999999999998875422        001111111122234455599999999999999999999999877777


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300          94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL  173 (185)
Q Consensus        94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  173 (185)
                      ..  +..|.+|||+|++.|+.++++.++.++..+|..+..|.||||.|+.+++.+++.+|+++|+|.-.++..++|++++
T Consensus        77 l~--d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldl  154 (854)
T KOG0507|consen   77 LC--DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDL  154 (854)
T ss_pred             hh--hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence            65  7889999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCccccc
Q psy6300         174 AVEKANADIVT  184 (185)
Q Consensus       174 A~~~~~~~~~~  184 (185)
                      |++.|..++++
T Consensus       155 A~qfgr~~Vvq  165 (854)
T KOG0507|consen  155 ASRFGRAEVVQ  165 (854)
T ss_pred             HHHhhhhHHHH
Confidence            99999988875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=8.4e-19  Score=104.16  Aligned_cols=89  Identities=24%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             HHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q psy6300          16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWT   95 (185)
Q Consensus        16 l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~   95 (185)
                      ||+|++.|+++++++|++.+.+++.                         |.+|||+|+..|+.+++++|+++|.+++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-------------------------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~   55 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-------------------------GNTALHYAAENGNLEIVKLLLENGADINSQ   55 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-------------------------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-B
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-------------------------CCCHHHHHHHcCCHHHHHHHHHhccccccc
Confidence            7999999999999999998876653                         457999999999999999999999999886


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q psy6300          96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD  131 (185)
Q Consensus        96 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  131 (185)
                        +..|.||||.|+..++.+++++|++.|++++.+|
T Consensus        56 --~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   56 --DKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             --STTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             --CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence              7899999999999999999999999999998754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214|consensus

Probab=99.81  E-value=3.7e-19  Score=101.63  Aligned_cols=103  Identities=26%  Similarity=0.231  Sum_probs=94.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS  148 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  148 (185)
                      .+.|+++.|.++-++..+..|.+++..   ..|++|||+|+..|..+++++|+..|++++.+|++|-|||..|+.-|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            467889999999999999998777754   57999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy6300         149 QVCLLLKHKADQHIVDSSGVEPLTLA  174 (185)
Q Consensus       149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A  174 (185)
                      ||++|++.|++...+.-+|.+.+..+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999988888888877654

>KOG3676|consensus

Probab=99.80  E-value=5.4e-19  Score=135.30  Aligned_cols=163  Identities=20%  Similarity=0.134  Sum_probs=135.8

Q ss_pred             CCCCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           6 DVSDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      +-+..-|+|.||.|...   ++.++++.|++.-...                ..+.-....+.|.++||+|+.+.+.+.|
T Consensus       137 ~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l----------------ind~~~~eeY~GqSaLHiAIv~~~~~~V  200 (782)
T KOG3676|consen  137 NERGATGETLLHKALLNLSDGHNELARVLLEIFPKL----------------INDIYTSEEYYGQSALHIAIVNRDAELV  200 (782)
T ss_pred             ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH----------------hhhhhhhHhhcCcchHHHHHHhccHHHH
Confidence            34456799999999973   4558888888754321                1111122234899999999999999999


Q ss_pred             HHHHHcCCCCCCCCC------C---------------CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          83 CHALALGASKDWTNP------N---------------DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~------~---------------~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      ..|++.|+|++.+..      +               ..|..||..|+-.++.+++++|++.|+|+++.|..|+|.||..
T Consensus       201 ~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~l  280 (782)
T KOG3676|consen  201 RLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHML  280 (782)
T ss_pred             HHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHH
Confidence            999999999976411      1               1477899999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         142 TELGHTSQVCLLLKHKAD--QHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       142 ~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.+...++-.++++.|++  ...+|.+|-|||.+|++.|+.++.+
T Consensus       281 Vi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~  325 (782)
T KOG3676|consen  281 VIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQ  325 (782)
T ss_pred             HHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHH
Confidence            999999999999999999  8999999999999999999988754

>KOG0514|consensus

Probab=99.74  E-value=3.3e-17  Score=115.52  Aligned_cols=130  Identities=21%  Similarity=0.194  Sum_probs=114.2

Q ss_pred             CCCCCCCCCchHHHHHHhc-----CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC
Q psy6300           4 TDDVSDLSPELLLYRASTV-----HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN   78 (185)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~-----g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~   78 (185)
                      +.|-++..|.||+..++..     .+.++|..|...| ++|.+..                    .-|+|+|.+|+..|+
T Consensus       294 ~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs--------------------Q~gQTALMLAVSHGr  352 (452)
T KOG0514|consen  294 DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS--------------------QHGQTALMLAVSHGR  352 (452)
T ss_pred             cccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh--------------------hhcchhhhhhhhcCc
Confidence            5778889999999998854     4567888888887 4554432                    178999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          79 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      .++++.|+..|+|+|.+  |.+|.|+|..||++|+.++++.|+. .+++...+|.+|.|+|++|...|+.+|..+|+.+
T Consensus       353 ~d~vk~LLacgAdVNiQ--DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  353 VDMVKALLACGADVNIQ--DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHHHHccCCCccc--cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            99999999999999997  9999999999999999999999996 4699999999999999999999999999999744

>KOG3676|consensus

Probab=99.71  E-value=1.7e-16  Score=121.93  Aligned_cols=145  Identities=20%  Similarity=0.090  Sum_probs=119.7

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCC-CchhhHHh-hccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300          10 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDD-HRTYLHQA-VIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      +.|+||||.|+...+.++|++|++.|++++.+..... .++.-... ....-.-..+.|+.||.+|+..++.+++.+|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            4599999999999999999999999999987642110 00000000 000011124589999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK--INCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      +++|++.+  |..|+|.||..+..-..++..+++..|++  ....+..|.|||-.|++.|..++.+.+++.
T Consensus       262 ~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999987  99999999999999889999999999999  788889999999999999999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.70  E-value=2.6e-17  Score=88.62  Aligned_cols=55  Identities=40%  Similarity=0.607  Sum_probs=32.6

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy6300         120 LILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA  174 (185)
Q Consensus       120 Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A  174 (185)
                      |++.| .+++..|..|.||||+|+..|+.+++++|++.|++++.++..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46667 88899999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.69  E-value=8.9e-16  Score=106.10  Aligned_cols=129  Identities=26%  Similarity=0.229  Sum_probs=117.9

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC-----HHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN-----LPV   81 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~   81 (185)
                      ..+..+.++++.++..+...+++++++.|.+++..+.                     .|.+++|+|+..++     .++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------~g~t~l~~a~~~~~~~~~~~~~  126 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA---------------------DGDTPLHLAALNGNPPEGNIEV  126 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC---------------------CCCcHHHHHHhcCCcccchHHH
Confidence            4555688999999999999999999999999988877                     99999999999999     999


Q ss_pred             HHHHHHcCC--CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          82 MCHALALGA--SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        82 ~~~ll~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      ++.+++.+.  +.... ++..|.||||+|+..|+.++++.|+..|++++..+..|.|++++|+..+...+++.+++.+
T Consensus       127 ~~~ll~~g~~~~~~~~-~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         127 AKLLLEAGADLDVNNL-RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHHcCCCCCCccc-cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999998  34332 3789999999999999999999999999999999999999999999999999999999865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.68  E-value=5.3e-16  Score=107.22  Aligned_cols=120  Identities=30%  Similarity=0.336  Sum_probs=110.5

Q ss_pred             CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCC
Q psy6300          63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS-----VMACEYLILNGL---KINCPDAQG  134 (185)
Q Consensus        63 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~g~---~~~~~~~~~  134 (185)
                      +..+..+++.++..+....+.+++..+.+++.+  +..|.|++|.|+..++     .+++++|+..|+   ..+..+..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            335789999999999999999999999999765  8899999999999999     999999999999   566679999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .||||+|+..++.+++++|++.|++++.++..|.|+++.|+..++.++++
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  197 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVK  197 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHH
Confidence            99999999999999999999999999999999999999999999877654

>KOG4214|consensus

Probab=99.67  E-value=6.6e-16  Score=88.41  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=90.6

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD   93 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   93 (185)
                      .-+.|+.+.|.++-++.....|-+++..-                      .|++|||+|+.+|+++++++|+..|++++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~----------------------ggR~plhyAAD~GQl~ilefli~iGA~i~   61 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY----------------------GGRTPLHYAADYGQLSILEFLISIGANIQ   61 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh----------------------CCcccchHhhhcchHHHHHHHHHhccccC
Confidence            46789999999999998888887665442                      78899999999999999999999999888


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      .+  |..|.|||..|++.|+.+++++|+++|++......+|.+.+..+
T Consensus        62 ~k--DKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   62 DK--DKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             Cc--cccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            75  89999999999999999999999999999887777877665433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.67  E-value=1.2e-15  Score=120.18  Aligned_cols=106  Identities=28%  Similarity=0.246  Sum_probs=98.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      ..|+.|+..|+.+.++.|++.|.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            4588899999999999999999999876  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-------CCCCCCCCCCCCcHHHHHH
Q psy6300         148 SQVCLLLKH-------KADQHIVDSSGVEPLTLAV  175 (185)
Q Consensus       148 ~~v~~Ll~~-------g~~~~~~~~~~~t~l~~A~  175 (185)
                      +++++|+++       |++.+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999998       8888888888888876554

>KOG4369|consensus

Probab=99.65  E-value=1.6e-16  Score=125.67  Aligned_cols=151  Identities=21%  Similarity=0.182  Sum_probs=97.6

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      ..+-.|+|-.||..||.|+++.|+.+|+++.-+++                     .|.+||.+|+-.|+..+|+.|+..
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdk---------------------kgf~plImaatagh~tvV~~llk~  812 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDK---------------------KGFVPLIMAATAGHITVVQDLLKA  812 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccccccccc---------------------ccchhhhhhcccCchHHHHHHHhh
Confidence            34567889999999999999999999998887777                     555666666666666666666655


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCC--CCC
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIV--DSS  166 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~  166 (185)
                      -+++..+ .|+.+.|+|.+||..|..+++++|+..|++....+....|||.+|..-|..++++.|+..|.+++.+  .+.
T Consensus       813 ha~veaQ-sdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSkl  891 (2131)
T KOG4369|consen  813 HADVEAQ-SDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKL  891 (2131)
T ss_pred             hhhhhhh-cccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccccccc
Confidence            5555544 2555566666666666666666666666665555555566666666666666666666666555443  334


Q ss_pred             CCcHHHHHHHhCCcc
Q psy6300         167 GVEPLTLAVEKANAD  181 (185)
Q Consensus       167 ~~t~l~~A~~~~~~~  181 (185)
                      |-.||.+|..+|+..
T Consensus       892 gisPLmlatmngh~~  906 (2131)
T KOG4369|consen  892 GISPLMLATMNGHQA  906 (2131)
T ss_pred             CcchhhhhhhccccH
Confidence            555666666665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.63  E-value=1.8e-15  Score=81.03  Aligned_cols=54  Identities=35%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy6300         101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL  154 (185)
Q Consensus       101 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  154 (185)
                      |.|+||.|+..|+.+++++|++.|.+++..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888878888888888888888888888888888775

...

>KOG1710|consensus

Probab=99.61  E-value=1.8e-14  Score=99.04  Aligned_cols=131  Identities=22%  Similarity=0.234  Sum_probs=111.7

Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300           1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      |.....++=....+||..+.-.+..+-+..|++---+++..++                     .|+++|-.|+..|+++
T Consensus         1 Mt~~~k~qld~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~---------------------sGMs~LahAaykGnl~   59 (396)
T KOG1710|consen    1 MTTTEKVQLDAPKSPLLEAIDKNDTEAALALLSTVRQVNQRDP---------------------SGMSVLAHAAYKGNLT   59 (396)
T ss_pred             CcccccccccchhhHHHHHHccCcHHHHHHHHHHhhhhhccCC---------------------CcccHHHHHHhcCcHH
Confidence            3334444555678899999999999999888876555677776                     9999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          81 VMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      .++.+++.|+|+|.. .+..++|||+.|+.+|+.+++..|++.|+.+...+.-|+|+-..|+.-|+-++|..+
T Consensus        60 ~v~lll~~gaDvN~~-qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   60 LVELLLELGADVNDK-QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHHHhCCCcCcc-cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999986 366789999999999999999999999999998889999999999999988887765

>KOG1710|consensus

Probab=99.59  E-value=1.6e-14  Score=99.33  Aligned_cols=118  Identities=20%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP-DAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~~~t~l~~A~~  143 (185)
                      ..+++|.-++-.|..+....|+..--.++..  |..|.++|..|+..|+.++++.|++.|+|+|.. +..+.||||.|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            5678899999999999999888765557765  899999999999999999999999999999864 5568899999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|+.++.++|++.|+.....+.-|.|+-..|+--|+.+||.
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence            99999999999999999999999999999999999999985

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.58  E-value=2.6e-14  Score=112.75  Aligned_cols=105  Identities=18%  Similarity=0.095  Sum_probs=94.4

Q ss_pred             HHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCC
Q psy6300          15 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDW   94 (185)
Q Consensus        15 ~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~   94 (185)
                      .|+.|+..|+.++++.|++.|++++.++.                     .|.||||+|+..|+.+++++|++.|++++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~---------------------~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~  143 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDY---------------------DGRTPLHIACANGHVQVVRVLLEFGADPTL  143 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCC---------------------CCCcHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence            58899999999999999999999988877                     899999999999999999999999999987


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHHc-------CCCCCCCCCCCCcHHHHHH
Q psy6300          95 TNPNDDHRTYLHQAVIGNSVMACEYLILN-------GLKINCPDAQGKTPLYLAT  142 (185)
Q Consensus        95 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~~~t~l~~A~  142 (185)
                      .  |..|.||||+|+..++.+++++|+.+       |++.+..+..|.+|+..+.
T Consensus       144 ~--d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        144 L--DKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             C--CCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            6  88999999999999999999999998       7777777776766655544

>KOG0515|consensus

Probab=99.58  E-value=5.8e-15  Score=108.84  Aligned_cols=105  Identities=22%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      ..|.-|+..|-++.|+.++..-.|+..-  +.+|.|+||-|+-.|+.+|+++|+..|+++|+.|.+|+||||+|+..++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            3355678889999999998777777764  78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCC-CCCCCcHHHHH
Q psy6300         148 SQVCLLLKHKADQHIV-DSSGVEPLTLA  174 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~-~~~~~t~l~~A  174 (185)
                      .+++.|.+.|+-+-.. -.+++|+.+-+
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhc
Confidence            9999999999776443 34677776644

>KOG4369|consensus

Probab=99.56  E-value=6.6e-15  Score=116.83  Aligned_cols=179  Identities=21%  Similarity=0.131  Sum_probs=107.4

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchh---------------hHHhhccCCcccCCCchhH
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTY---------------LHQAVIGVNDVSDLSPELL   69 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~   69 (185)
                      .+-++....|||..|...|.+++++.|+..|.+++.+.....+...               +...+.+++..-....++.
T Consensus       850 kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTa  929 (2131)
T KOG4369|consen  850 KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTA  929 (2131)
T ss_pred             ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccc
Confidence            3334444455555555555555555555555544444332222211               2222223333333344444


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC---------------------
Q psy6300          70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN---------------------  128 (185)
Q Consensus        70 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~---------------------  128 (185)
                      |.+|+-.|+.+.+..||.+.+....+  -..|.|||.-++..|..++-.+|+..|+|.|                     
T Consensus       930 ltla~fqgr~evv~lLLa~~anvehR--aktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~ 1007 (2131)
T KOG4369|consen  930 LTLALFQGRPEVVFLLLAAQANVEHR--AKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHT 1007 (2131)
T ss_pred             eeeccccCcchHHHHHHHHhhhhhhh--cccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCch
Confidence            44444444444444444443333332  2345556555555555555555555555554                     


Q ss_pred             --------------CCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         129 --------------CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       129 --------------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                                    .+++.|.|+|..|+..|+...+.+|+..++|++..+....+++..|.+.|+.+||++
T Consensus      1008 kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1008 KFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred             hhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheecc
Confidence                          445678899999999999999999999999999999999999999999999999974

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=8.9e-15  Score=78.71  Aligned_cols=55  Identities=31%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             HHHcC-CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          85 ALALG-ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        85 ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      |++.+ .+++..  |..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            35556 555554  88999999999999999999999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=3.2e-14  Score=76.10  Aligned_cols=54  Identities=20%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      |.||||+|++.|+.+++++|++.|.+++..+.                     .|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~---------------------~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE---------------------DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T---------------------TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC---------------------CCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999999988877                     9999999999999999999885

...

>KOG0515|consensus

Probab=99.46  E-value=5.7e-13  Score=98.56  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=99.5

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD   93 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   93 (185)
                      -.|.-|+..|-+++|+.++..-.++...+.                     .|.|+||-|+..|++++|++|++.|.++|
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNd---------------------EGITaLHNAiCaghyeIVkFLi~~ganVN  610 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPND---------------------EGITALHNAICAGHYEIVKFLIEFGANVN  610 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCc---------------------cchhHHhhhhhcchhHHHHHHHhcCCccc
Confidence            356778999999999998877777766655                     89999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH--hCCHHHHHHHH
Q psy6300          94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE--LGHTSQVCLLL  154 (185)
Q Consensus        94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~--~~~~~~v~~Ll  154 (185)
                      ..  |.+|+||||.|+..++..+|+.|++.|+.+-+.+ .++.|+..-+-.  -|..+|..||.
T Consensus       611 a~--DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  611 AA--DSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             Cc--cCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            86  9999999999999999999999999998775543 345677665543  36778888885

>KOG0818|consensus

Probab=99.44  E-value=7.7e-13  Score=97.05  Aligned_cols=79  Identities=30%  Similarity=0.412  Sum_probs=71.0

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         105 LHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       105 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      ||.+++.|+.+++-.|+..|++.|..+.+ |.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|...|+.++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            88899999999998899999999988765 78999999999999999999999999999999999999999999988765

>KOG0783|consensus

Probab=99.18  E-value=1.7e-11  Score=95.26  Aligned_cols=82  Identities=28%  Similarity=0.342  Sum_probs=74.2

Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy6300          97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV  175 (185)
Q Consensus        97 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~  175 (185)
                      +|..|+++||.++..+..++++||+++|++++.+|.+ |.||||-|+.+|+.+++..|+.+|+....+|.+|..||+..+
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence            4888999999999999999999999999999888875 889999999999999999999999999999999999999887


Q ss_pred             HhC
Q psy6300         176 EKA  178 (185)
Q Consensus       176 ~~~  178 (185)
                      +..
T Consensus       128 r~~  130 (1267)
T KOG0783|consen  128 RVL  130 (1267)
T ss_pred             hcc
Confidence            743

>PF13606 Ank_3: Ankyrin repeat

Probab=99.14  E-value=1.1e-10  Score=54.05  Aligned_cols=29  Identities=45%  Similarity=0.589  Sum_probs=22.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300         133 QGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus       133 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +|+||||+|+..++.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36788888888888888888888887776

>KOG0818|consensus

Probab=99.14  E-value=4.8e-10  Score=82.72  Aligned_cols=87  Identities=25%  Similarity=0.323  Sum_probs=79.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      .-||.+++.|+++.+-.|+..|+++|+.- ...|.||||.|++.|....++.|+-.|+|+...|..|+||+.+|-..|+-
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~h-pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFH-PEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCC-cccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            45889999999999999999999999874 35699999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHh
Q psy6300         148 SQVCLLLK  155 (185)
Q Consensus       148 ~~v~~Ll~  155 (185)
                      ++++.|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            87776643

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.6e-10  Score=53.51  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=27.4

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKD   39 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~   39 (185)
                      +|+||||+||..|+.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999876

>KOG0506|consensus

Probab=99.10  E-value=2.2e-10  Score=84.09  Aligned_cols=92  Identities=23%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      .+...+.+|++.|++..++.+.-.|.|...+  |.+.+|+||.|+..|+.+++++|+. .+.+.+.+|.+|+|||.-|..
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            5667789999999999999999999999886  8899999999999999999999996 568999999999999999999


Q ss_pred             hCCHHHHHHHHhCCC
Q psy6300         144 LGHTSQVCLLLKHKA  158 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~  158 (185)
                      .++.+++++|-+..-
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999976653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.09  E-value=2.9e-10  Score=54.07  Aligned_cols=32  Identities=50%  Similarity=0.657  Sum_probs=25.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Q psy6300         133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVD  164 (185)
Q Consensus       133 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  164 (185)
                      .|.||||+|+..++.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36788888888888888888888888887665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=99.08  E-value=6.2e-11  Score=86.90  Aligned_cols=86  Identities=27%  Similarity=0.322  Sum_probs=79.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHhC
Q psy6300         100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       100 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                      ++...+.+|+..|+...++.+.-.|.|++..|.+.+|+||.|+.-|+.+++++|+.. +.+++.+|.+|+|||+=|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344578899999999999999999999999999999999999999999999999965 7999999999999999999999


Q ss_pred             CcccccC
Q psy6300         179 NADIVTL  185 (185)
Q Consensus       179 ~~~~~~~  185 (185)
                      |.+++++
T Consensus       585 h~~v~k~  591 (622)
T KOG0506|consen  585 HKEVVKL  591 (622)
T ss_pred             cHHHHHH
Confidence            9998864

>KOG0782|consensus

Probab=99.07  E-value=7.4e-10  Score=83.25  Aligned_cols=92  Identities=24%  Similarity=0.264  Sum_probs=74.5

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      +-.+.||+|++.|+-++++++++++........+..|.|+||.|+..++..++++|++.|+.+..+|..|.||-.-|-..
T Consensus       898 ~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  898 DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhc
Confidence            66688888888888888888888876554433467788888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhC
Q psy6300         145 GHTSQVCLLLKH  156 (185)
Q Consensus       145 ~~~~~v~~Ll~~  156 (185)
                      +..+++-||-..
T Consensus       978 ~d~dlaayle~r  989 (1004)
T KOG0782|consen  978 GDPDLAAYLESR  989 (1004)
T ss_pred             CCchHHHHHhhh
Confidence            888888888543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.99  E-value=1.1e-09  Score=52.01  Aligned_cols=32  Identities=16%  Similarity=0.034  Sum_probs=29.8

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTN   42 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~   42 (185)
                      +|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999998764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.98  E-value=1.9e-09  Score=81.13  Aligned_cols=112  Identities=23%  Similarity=0.256  Sum_probs=95.7

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHhCCH
Q psy6300          70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK--INCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        70 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      +..|+..+++-..+.....|.+...+  +.+..+.||+|+..|+-++++|++.+|..  ++..|..|.|+||.|+..++-
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            45566667766666666677777775  77888999999999999999999999854  577788899999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      .++.+|.+.|+.....|..|.||-..|...|..+.+
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCchHH
Confidence            999999999999999999999999999988877654

>KOG0783|consensus

Probab=98.89  E-value=1.7e-09  Score=84.60  Aligned_cols=95  Identities=16%  Similarity=0.223  Sum_probs=82.4

Q ss_pred             chhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          48 RTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPND-DHRTYLHQAVIGNSVMACEYLILNGLK  126 (185)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~g~~  126 (185)
                      ..++.....+.....+..|+++||+++..+...++.+|+.+|.+++.+  |. .|+||||.|...|+++++-.|++.|..
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vq--D~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQ--DEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeec--cccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            344555555555566669999999999999999999999999999876  54 599999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHh
Q psy6300         127 INCPDAQGKTPLYLATEL  144 (185)
Q Consensus       127 ~~~~~~~~~t~l~~A~~~  144 (185)
                      +...|++|.+||..-++-
T Consensus       112 L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             eEEecccCCCHHHHHhhc
Confidence            999999999999988774

>KOG0705|consensus

Probab=98.85  E-value=3.7e-08  Score=74.32  Aligned_cols=101  Identities=27%  Similarity=0.344  Sum_probs=81.4

Q ss_pred             cccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q psy6300          60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDW--TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTP  137 (185)
Q Consensus        60 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~  137 (185)
                      .+....-..-|.-|.-..++..+..|+.+|.....  ..-+.+|+|+||+||..|+..+.++|+=.|+|+...|..|+|+
T Consensus       618 ~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  618 PCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTA  697 (749)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchh
Confidence            44333333445666666778888888877655432  2225678999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCC
Q psy6300         138 LYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus       138 l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      |.||-..+.-+|+.+|+++|+..
T Consensus       698 l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999764

>KOG0521|consensus

Probab=98.79  E-value=8.1e-09  Score=82.35  Aligned_cols=103  Identities=44%  Similarity=0.570  Sum_probs=87.1

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          81 VMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      .+..-...++..++...-..|.++||.|+..+...++++|+.+|+++|..|..|++|+|.+...|+...+..|+++|++.
T Consensus       636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~  715 (785)
T KOG0521|consen  636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP  715 (785)
T ss_pred             hhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc
Confidence            33333445555565433356789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCCcccc
Q psy6300         161 HIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       161 ~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      +..+.+|.+|+++|....+-+++
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIV  738 (785)
T ss_pred             cccCccCcchhhHHhhhccccHH
Confidence            99999999999999776555543

>KOG0522|consensus

Probab=98.76  E-value=4.4e-08  Score=73.15  Aligned_cols=88  Identities=23%  Similarity=0.191  Sum_probs=65.6

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      .|+|++......+.+...+..........+|..|.||||+|+.-|+...++.|+..|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45788877777666655443223333333477788899999999999999988888888888888899999999988888


Q ss_pred             HHHHHHHh
Q psy6300         148 SQVCLLLK  155 (185)
Q Consensus       148 ~~v~~Ll~  155 (185)
                      +++..++.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            77766654

>KOG0522|consensus

Probab=98.75  E-value=1.9e-08  Score=75.01  Aligned_cols=81  Identities=37%  Similarity=0.484  Sum_probs=69.6

Q ss_pred             hHHHHHHhcCCHHHHHH-HH-HcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCc
Q psy6300         103 TYLHQAVIGNSVMACEY-LI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA  180 (185)
Q Consensus       103 ~~l~~a~~~~~~~~~~~-Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  180 (185)
                      .++|.++.....+-... |. +.+..++..|..|.||||.|+..|+.+.++.|+..|+++..++.+|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45899988887765443 33 34566788899999999999999999999999999999999999999999999999987


Q ss_pred             ccc
Q psy6300         181 DIV  183 (185)
Q Consensus       181 ~~~  183 (185)
                      +++
T Consensus       102 q~i  104 (560)
T KOG0522|consen  102 QII  104 (560)
T ss_pred             HHH
Confidence            665

>KOG0511|consensus

Probab=98.69  E-value=9e-08  Score=68.94  Aligned_cols=86  Identities=14%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      ....-|..||+.|+++.+++|++.|..+|..  |.+..+||.+|+..|+.+++++|+++|+....-.-+|.-+ ||++.+
T Consensus        35 ~~f~elceacR~GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   35 VPFGELCEACRAGDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             CchHHHHHHhhcccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            3455677888889999999988888888775  7888888888988899999999998888777555556555 566655


Q ss_pred             CCHHHHHHHHh
Q psy6300         145 GHTSQVCLLLK  155 (185)
Q Consensus       145 ~~~~~v~~Ll~  155 (185)
                      ..  +-++|+.
T Consensus       112 d~--IR~mlls  120 (516)
T KOG0511|consen  112 DR--IRRMLLS  120 (516)
T ss_pred             HH--HHHHHHH
Confidence            33  3344443

>KOG0705|consensus

Probab=98.55  E-value=7.2e-07  Score=67.58  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      ..+..-...|..|.....+..+-.|+.+|-....-..                 +.+.+|.++||+||+.|++...+.|+
T Consensus       619 ~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t-----------------~~~~~grt~LHLa~~~gnVvl~QLLi  681 (749)
T KOG0705|consen  619 CTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNET-----------------CGEGDGRTALHLAARKGNVVLAQLLI  681 (749)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhcc-----------------ccCCCCcchhhhhhhhcchhHHHHHH
Confidence            3333334467778888888888889999865322111                 12228899999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN  128 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  128 (185)
                      =+|.|+...  |.+|+|+|.+|-..|..+++..|+..|+.-+
T Consensus       682 Wyg~dv~~r--da~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  682 WYGVDVMAR--DAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             HhCccceec--ccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            999998876  9999999999999999999999999987543

>KOG2384|consensus

Probab=98.52  E-value=9.2e-07  Score=57.99  Aligned_cols=66  Identities=14%  Similarity=-0.103  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcC-CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      +-++|++|..|+|++..|+..|+.+.+.||+++| +.+...+.                     .+...+.+|-+.|..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~---------------------ssldaaqlaek~g~~~   60 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE---------------------SSLDAAQLAEKGGAQA   60 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc---------------------ccchHHHHHHhcChHH
Confidence            3478999999999999999999999999999999 67777776                     8888999999999999


Q ss_pred             HHHHHHHc
Q psy6300          81 VMCHALAL   88 (185)
Q Consensus        81 ~~~~ll~~   88 (185)
                      ++..|.+.
T Consensus        61 fvh~lfe~   68 (223)
T KOG2384|consen   61 FVHSLFEN   68 (223)
T ss_pred             HHHHHHHH
Confidence            99999765

>KOG3609|consensus

Probab=98.46  E-value=3.4e-06  Score=66.69  Aligned_cols=123  Identities=23%  Similarity=0.148  Sum_probs=95.5

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCC----CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGAS----KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      .+..-+..|+..|+...++..++....    ++..+.                     -|.++++.|+...+.+++++|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~---------------------lGr~al~iai~nenle~~eLLl   82 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP---------------------LGRLALHIAIDNENLELQELLL   82 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccCh---------------------HhhhceecccccccHHHHHHHh
Confidence            345567889999999999987664432    333333                     8999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC----------CCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN----------CPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~----------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      +++...         .-+|..|+.-|..++++.++.......          ..-.-+.||+..||..++.||+++|+++
T Consensus        83 ~~~~~~---------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   83 DTSSEE---------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             cCcccc---------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            876433         247888999999999999987632221          1123468999999999999999999999


Q ss_pred             CCCCCCC
Q psy6300         157 KADQHIV  163 (185)
Q Consensus       157 g~~~~~~  163 (185)
                      |+++...
T Consensus       154 g~~i~~P  160 (822)
T KOG3609|consen  154 GHCIPIP  160 (822)
T ss_pred             CCCCCCC
Confidence            9987654

>KOG0511|consensus

Probab=98.46  E-value=2.2e-06  Score=62.02  Aligned_cols=70  Identities=30%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy6300         103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLT  172 (185)
Q Consensus       103 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  172 (185)
                      .-|..||+.|+.+.+++|++.|.++|..|.+...||.+|+..|+..+|++|+++|+-.+.-.-+|..++.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            4578899999999999999999999999999999999999999999999999999765544446666653

>KOG0521|consensus

Probab=98.42  E-value=5.3e-07  Score=72.26  Aligned_cols=87  Identities=28%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .|.+++|.|+.+++.-.++.|++.|.+++..  |..|++|+|.+...|+......|+++|++.+..+..|.+|+.+|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            6789999999999999999999999998886  89999999999999999999999999999999999999999999887


Q ss_pred             CCHHHHHHH
Q psy6300         145 GHTSQVCLL  153 (185)
Q Consensus       145 ~~~~~v~~L  153 (185)
                      .+.+++-++
T Consensus       733 ~~~d~~~l~  741 (785)
T KOG0521|consen  733 ANADIVLLL  741 (785)
T ss_pred             ccccHHHHH
Confidence            666655444

>KOG3609|consensus

Probab=98.38  E-value=1.4e-06  Score=68.87  Aligned_cols=114  Identities=25%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGAS--KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLAT  142 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~  142 (185)
                      .+..-+..|++.|+...++..++....  .|..-.|.-|++++++|..+.+.++.++|++.....       +.+|.+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            455667889999999999998865443  333324788999999999999999999999975443       45999999


Q ss_pred             HhCCHHHHHHHHhCCCCC----------CCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         143 ELGHTSQVCLLLKHKADQ----------HIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       143 ~~~~~~~v~~Ll~~g~~~----------~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      ..+..+.|+.++.+....          .....-+-||+.+|+..+++||+++
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHH
Confidence            999999999998775432          1344567899999999999999874

>KOG2384|consensus

Probab=98.38  E-value=3.8e-07  Score=59.75  Aligned_cols=64  Identities=22%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          97 PNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        97 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      .|..|+|++..|+..|..+.++||+..| +.+...|..+.+++-+|-+.|..++++.|.++-.+-
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4889999999999999999999999999 889989999999999999999999999998875443

>KOG0520|consensus

Probab=98.19  E-value=2.1e-06  Score=69.16  Aligned_cols=118  Identities=20%  Similarity=0.176  Sum_probs=89.7

Q ss_pred             CCCchhHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHH
Q psy6300          63 DLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYL  140 (185)
Q Consensus        63 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~  140 (185)
                      ...+++.+|+++..+....++.+++- +......  |..+...+|. |..++.+..-+|+ -.|..++..|..|+||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el--d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL--DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhh--cccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            33888999999999988888888874 4333332  5566667777 5556666554444 5688899999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHHhCCcccc
Q psy6300         141 ATELGHTSQVCLLLKHKADQH------IVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       141 A~~~~~~~~v~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      |+..|+..++..|+..|++..      ...-.|.|+..+|..+|+..+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchH
Confidence            999999999999997776643      2344689999999988886653

>KOG2505|consensus

Probab=98.10  E-value=5.2e-06  Score=62.03  Aligned_cols=64  Identities=27%  Similarity=0.188  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy6300         112 NSVMACEYLILNGLKINC------PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV  175 (185)
Q Consensus       112 ~~~~~~~~Ll~~g~~~~~------~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~  175 (185)
                      .-...+++|.+++...|.      .+....|+||+|+..|..++|.+||+.|+|+.++|..|.||+.++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            346678999998877643      3445789999999999999999999999999999999999998875

>KOG0520|consensus

Probab=97.89  E-value=2.2e-05  Score=63.56  Aligned_cols=126  Identities=17%  Similarity=0.076  Sum_probs=91.2

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      .....|++.+|.++..+..-+++.+++- |......+.                     ++...+|+++. ++++....+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~---------------------d~qgV~hfca~-lg~ewA~ll  626 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR---------------------DGQGVIHFCAA-LGYEWAFLP  626 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc---------------------cCCChhhHhhh-cCCceeEEE
Confidence            4455689999999999999999998875 444444444                     77778888664 444443333


Q ss_pred             -HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          86 -LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN------CPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        86 -l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                       .-.+..++.  +|..|+||||+|+..|+..++.-|+..|++..      ..+..|.|+...|..+|+..+.-+|-+.
T Consensus       627 ~~~~~~ai~i--~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  627 ISADGVAIDI--RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             Eeeccccccc--ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence             344444554  48999999999999999999999987665432      2344688999999999988887777443

>smart00248 ANK ankyrin repeats

Probab=97.59  E-value=0.0002  Score=31.73  Aligned_cols=27  Identities=52%  Similarity=0.640  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300         134 GKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus       134 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      +.||+|+|+..+..+++++|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.58  E-value=0.00017  Score=31.96  Aligned_cols=29  Identities=28%  Similarity=0.148  Sum_probs=25.7

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKD   39 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~   39 (185)
                      .|.+|+++|+..++.+++++|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999987653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.04  E-value=0.0014  Score=49.51  Aligned_cols=64  Identities=19%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             HHHHHHHHHcCCCCCCCCC----CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy6300          79 LPVMCHALALGASKDWTNP----NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLAT  142 (185)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~  142 (185)
                      ...+++|.+.+.+.|..+.    +..-.|+||+|+..|..+++.+|++.|+|...+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888887777765432    233558999999999999999999999999999999999999886

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.85  E-value=0.016  Score=38.43  Aligned_cols=132  Identities=16%  Similarity=0.029  Sum_probs=88.0

Q ss_pred             HHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCC
Q psy6300          15 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDW   94 (185)
Q Consensus        15 ~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~   94 (185)
                      .|..|+..+-++++++..+...+. ..                       ..+..+-.||+..+.+++.|+-..-.   .
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~-~~-----------------------~~q~LFElAC~~qkydiV~WI~qnL~---i  101 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE-RY-----------------------LNQELFELACEEQKYDIVKWIGQNLH---I  101 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc-hh-----------------------HHHHHHHHHHHHccccHHHHHhhccC---C
Confidence            467788888999998877665422 11                       56678889999999999999954321   1


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHH----HHHHHcCCCCCCCCC--CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300          95 TNPNDDHRTYLHQAVIGNSVMAC----EYLILNGLKINCPDA--QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV  168 (185)
Q Consensus        95 ~~~~~~~~~~l~~a~~~~~~~~~----~~Ll~~g~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  168 (185)
                          .+-.+.+..|....+.++.    .+++.....-+..|.  .-..-|..|+..|....+.-.+++|.+++.      
T Consensus       102 ----~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------  171 (192)
T PF03158_consen  102 ----YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------  171 (192)
T ss_pred             ----CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------
Confidence                2333567788888877652    223333221111111  011347889999999999999999988763      


Q ss_pred             cHHHHHHHhCCcccc
Q psy6300         169 EPLTLAVEKANADIV  183 (185)
Q Consensus       169 t~l~~A~~~~~~~~~  183 (185)
                      +.|..|+..++-.|+
T Consensus       172 ~vls~Av~ynhRkIL  186 (192)
T PF03158_consen  172 IVLSQAVKYNHRKIL  186 (192)
T ss_pred             HHHHHHHHhhHHHHH
Confidence            578899888776554

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.22  E-value=0.11  Score=35.84  Aligned_cols=93  Identities=17%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcC----CCCCCCCCCCCCChHHHH--HHhcCCHHHHHHHHHcC-CCCCC---CCCCC
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALG----ASKDWTNPNDDHRTYLHQ--AVIGNSVMACEYLILNG-LKINC---PDAQG  134 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~Ll~~g-~~~~~---~~~~~  134 (185)
                      .-.+++-+++..+.-+++-+|+..-    .++...   ..+..-+-+  +..+-+..++++++.+| +++|.   ..+.|
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~---~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSG  254 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM---EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc---CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCc
Confidence            4446677788777778888887542    111110   122223333  34445678999999998 67764   35679


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300         135 KTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus       135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      .|.|--|.++++.+++..|+++|+-.
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.21  E-value=0.068  Score=35.54  Aligned_cols=111  Identities=12%  Similarity=0.028  Sum_probs=70.5

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHH----HHH
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMC----HAL   86 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~----~ll   86 (185)
                      ..++.+..||+..+.++|+++-   .+....                       ...+-+..|....+.....    .++
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~---qnL~i~-----------------------~~~~iFdIA~~~kDlsLyslGY~l~~  128 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIG---QNLHIY-----------------------NPEDIFDIAFAKKDLSLYSLGYKLLF  128 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHh---hccCCC-----------------------CchhhhhhhhhccchhHHHHHHHHHH
Confidence            4567889999999999999983   333222                       3345566777777655422    223


Q ss_pred             HcCCCCCCCCCCCC--CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy6300          87 ALGASKDWTNPNDD--HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK  155 (185)
Q Consensus        87 ~~~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  155 (185)
                      ++...-...  |..  -...|..|+..|-..-+...++.|.+++.      ++|..|+.+++-.++.+++.
T Consensus       129 ~~~~~~~~~--d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  129 NRMMSEHNE--DPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             hhccccccc--CHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            332111000  111  11235678888888877777788776663      68999999988888887763

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.81  E-value=0.041  Score=31.19  Aligned_cols=49  Identities=16%  Similarity=0.000  Sum_probs=39.4

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      ...-+..|..+|+.|+++.+++.+ .                           ....++..|+...+.+++++|++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~-~---------------------------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKN-K---------------------------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHh-c---------------------------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            356789999999999999988665 2                           224678899999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.38  E-value=0.054  Score=30.71  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300         103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus       103 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      ..+..|+.+|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4567788888888888877653 111      3478888888888888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.45  E-value=2.8  Score=29.29  Aligned_cols=51  Identities=14%  Similarity=0.059  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHcCC-CCCCCC-CCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q psy6300          77 HNLPVMCHALALGA-SKDWTN-PNDDHRTYLHQAVIGNSVMACEYLILNGLKI  127 (185)
Q Consensus        77 ~~~~~~~~ll~~~~-~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  127 (185)
                      .+..++++++++|- ++|... +-..|.|.|.-|...++.+++.+|+++|+..
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            35678888888763 333221 2357999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		8e-27
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		9e-27
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		9e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		9e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-06
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		7e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		9e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
1uoh_A	226	Human Gankyrin Length = 226		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-04

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59  NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
            D+  L P  LL+RAS    +LP M  ALA GA  +W N   D+ T L QA   NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
           E+L+ NG  +N  D+ G+ PL+ AT LGHT   CL LK  AD    DS G +PLT+A+E 
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
           ANADIVTL
Sbjct: 312 ANADIVTL 319

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59  NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
            D+  L P  LL+RAS    +LP M  ALA GA  +W N   D+ T L QA   NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
           E+L+ NG  +N  D+ G+ PL+ AT LGHT   CL LK  AD    DS G +PLT+A+E 
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
           ANADIVTL
Sbjct: 312 ANADIVTL 319

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59  NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
            D+  L P  LL+RAS    +LP M  ALA GA  +W N   D+ T L QA   NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
           E+L+ NG  +N  D+ G+ PL+ AT LGHT   CL LK  AD    DS G +PLT+A+E 
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
           ANADIVTL
Sbjct: 312 ANADIVTL 319

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           D RT LH A         + LI  G  +N  D+ G+TPL+ A E GH   V LL+   AD
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
            +  DS G  PL LA E  N ++V L
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKL 154

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           D +T LH A         + L+  G   N  D+ GKTPL+LA E GH   V LLL   AD
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
            +  DS G  PL LA E  N ++V L
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKL 154

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           L Y A   H   V    L L    D    + D RT LH A         + L+  G   N
Sbjct: 41  LHYAAENGHKEIVK---LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D+ G+TPL+ A E GH   V LLL   AD +  DS G  PL LA E  N +IV L
Sbjct: 98  AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 46/93 (49%)
Query: 93  DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
           D    + D RT LH A         + LI  G  +N  D+ G+TPL+ A + GH   V L
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           L+   AD +  DS G  PL LA E  N +IV L
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           RT LH A     +   E L+ NG  +N  D  G TPL+LA  LGH   V +LLK+ AD +
Sbjct: 36  RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
             D++G+ PL LA    + +IV +
Sbjct: 96  AKDATGITPLYLAAYWGHLEIVEV 119

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ AS + +LP++ + L  GAS + +N   +  T LH A         +YL+ N  K+N 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
                +TPL+ A  +GHT+ V LLL++ A+ ++  ++G  PL +A  + + + V
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  D    +D  +T LH A I   +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRIL---MANGA--DVNAEDDSGKTPLHLAAIKGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + +G  +N  D  G TPL+LA   GH   V +LLK+ AD +  D+ G  PL LA +  + 
Sbjct: 67  LKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  + T+  +D  T LH A     +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRIL---MANGADVNATD--NDGYTPLHLAASNGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + NG  +N  D  G TPL+LA   GH   V +LLKH AD +  D+ G  PL LA +  + 
Sbjct: 67  LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++    A   ++D+T       T LH A     +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGW-----TPLHLAAHFGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + NG  +N  D+ G TPL+LA   GH   V +LLK+ AD +  DS G  PL LA ++ + 
Sbjct: 67  LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%)
Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
           L L A  D    + + RT LH A     +   + L+  G  +N  D  G+TPL+LA   G
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           H   V LLL+  AD +  D +G  PL LA    + ++V L
Sbjct: 80  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A     +   E L+ NG  +N  D  G TPL+LA   GH   V +LLK+ AD + 
Sbjct: 49  TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D +G+ PL LA  + + +IV +
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEV 131

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 45/98 (45%)
Query: 88  LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
           L A  D    + D  T LH A     +   E L+  G  +N  D  G TPL+LA   GH 
Sbjct: 55  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             V +LLK  AD +  D  G  P  LA++  N DI  +
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEV 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 93  DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
           D    +D+  T LH A     +   E L+ NG  +N  D+ G TPL+LA   GH   V +
Sbjct: 31  DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEV 90
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           LLKH AD +  D +G  PL LA      +IV +
Sbjct: 91  LLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
              L+ NG  +N  D QG TPL+LA  +GH   V +LLKH AD +  D+ G  PL LA +
Sbjct: 30  VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAAD 89
Query: 177 KANADIVTL 185
             + +IV +
Sbjct: 90  NGHLEIVEV 98

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D  G TPL+LA  +GH   V +LLK+ AD + +D SG  PL LA ++ +
Sbjct: 33  LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 180 ADIVTL 185
            +IV +
Sbjct: 93  LEIVEV 98

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A + + +   E L+ NG  +N  DA G+TPL+L    GH   V +LLKH AD + 
Sbjct: 49  TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D  G     ++++  N D+  +
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEI 131

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 96  NPNDDHR--TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
           +P  +HR  T LH A I   + + EYL+ NG   N  D  G TPL+ A   GH   V LL
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 154 LKHKADQHIVDSSGVE---PLTLAVEKANADIVTL 185
           L+HKA   +V+++G +   PL  A +  + DIV L
Sbjct: 63  LQHKA---LVNTTGYQNDSPLHDAAKNGHVDIVKL 94

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%)
Query: 88  LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
           L A  D    + D  T LH A     +   E L+  G  +N  D  G TPL+LA   GH 
Sbjct: 55  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             V +LLK  AD +  D  G  P  LA+ + + DI  +
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEV 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A     +   E L+ NG  +N  D  G TPL+LA  +GH   V +LLKH AD + 
Sbjct: 82  TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D  G     ++++  N D+  +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH   V LLL+  AD +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
             D +G  PL LA    + ++V L
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKL 86

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
              L+ NG  +N  D  G TPL+LA +LGH   V +LLK+ AD +  D+ G+ PL LA  
Sbjct: 30  VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 177 KANADIVTL 185
           + + +IV +
Sbjct: 90  RGHLEIVEV 98

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 54  AVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS 113
           A +   D S L+P   L+ A+T  +L ++   L  GA  D    +    T LH A +   
Sbjct: 38  ADVNATDASGLTP---LHLAATYGHLEIVEVLLKHGA--DVNAIDIXGSTPLHLAALIGH 92
Query: 114 VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL 173
           +   E L+ +G  +N  D  G TPL+LA  +GH   V +LLKH AD +  D  G     +
Sbjct: 93  LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 174 AVEKANADIVTL 185
           +++  N D+  +
Sbjct: 153 SIDNGNEDLAEI 164

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 85  ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
           A+AL   K   +PN  D   T  +H A     +   + L+ +G  +N PD  G  P++LA
Sbjct: 49  AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            + GHT+ V  L   ++D H  D+ G+ PL LA+++   D+V +
Sbjct: 109 VQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDI 151

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  D    + D  T LH A     +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRIL---MANGA--DVNAKDKDGYTPLHLAAREGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           +  G  +N  D  G TPL+LA   GH   V +LLK  AD +  D  G  PL LA  + + 
Sbjct: 67  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 85  ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
           A+AL   K   +PN  D   T  +H A     +   + L+ +G  +N PD  G  P++LA
Sbjct: 55  AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
            + GHT+ V  L   ++D H  D+ G+ PL LA+++   D+V
Sbjct: 115 VQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLV 155

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  + T+ +    T LH A     +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRIL---MANGADVNATDASG--LTPLHLAATYGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + +G  +N  D  G TPL+LA  +GH   V +LLKH AD + VD+ G  PL LA    + 
Sbjct: 67  LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A     +   E L+ NG  +N  D+ G TPL+LA + G+   V +LLKH AD + 
Sbjct: 82  TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D  G     ++++  N D+  +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A +   +   E L+ +G  ++  D  G TPL+LA   GH   V +LLK+ AD + 
Sbjct: 49  TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D +G  PL LA ++ + +IV +
Sbjct: 109 FDMTGSTPLHLAADEGHLEIVEV 131

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
            E L+ NG  +N  DA G TPL+LA  +GH     +LLKH AD +  D  G     +++ 
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 177 KANADIVTL 185
             N D+  +
Sbjct: 123 NGNEDLAEI 131

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEY 119
           SDL  +LL   RA     + ++   +A GA     N ND    T LH A   + +   E 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRIL---MANGAD---VNANDRKGNTPLHLAADYDHLEIVEV 65
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ +G  +N  D  G TPL+LA   GH   V +LLKH AD +  D  G     ++++  N
Sbjct: 66  LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 180 ADIVTL 185
            D+  +
Sbjct: 126 EDLAEI 131

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
              L+ NG  +N  DA G TPL+LA   GH   V +LLK+ AD + VD +G+ PL LA  
Sbjct: 30  VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 177 KANADIVTL 185
             + +IV +
Sbjct: 90  FGHLEIVEV 98

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++    A   + DW        T LH A     +   E L
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLG-----HTPLHLAAKTGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           +  G  +N  D  G TPL+LA + GH   V +LLKH AD +  D  G  PL LA    + 
Sbjct: 67  LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
Query: 181 DIVTL 185
           +IV +
Sbjct: 127 EIVEV 131

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 82  MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
           +CH L + A  +    ++D RT L +A   N + A +YLI  G  ++  DA+G T L+LA
Sbjct: 26  ICHML-VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA 84
Query: 142 TELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            + GH   V  LL + + D +  D  G  P+  A E  + D+V L
Sbjct: 85  AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A     +   E L+  G  +N  D QG TPL+LA E GH   V +LLK+ AD + 
Sbjct: 82  TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D  G     ++++  N D+  +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 74  STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ 133
           +T + +   C  L + A  D   P+ ++ T LH A I N +   +Y I  G  ++     
Sbjct: 16  ATQYGIYERCREL-VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 134 -GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
              TPL+ AT  GH S V  L+K+ AD  ++D  G   + LA +  +  IV
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  D    +D   T LH A     +   E L
Sbjct: 12  SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + +G  +N  D+ G+TPL+LA  +GH   V +LL++ AD +  D  G     ++++  N 
Sbjct: 67  LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
           D+  +
Sbjct: 127 DLAEI 131

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  D    +D   T LH A     +   E L
Sbjct: 12  SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + +G  +N  D  G+TPL+LA  +GH   V +LL++ AD +  D  G     ++++  N 
Sbjct: 67  LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
           D+  +
Sbjct: 127 DLAEI 131

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 62  SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
           SDL  +LL   RA     + ++   +A GA  D    +D   T LH A     +   E L
Sbjct: 12  SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
           + +G  +N  D  G+TPL+LA  +GH   V +LL++ AD +  D  G     ++++  N 
Sbjct: 67  LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
           D+  +
Sbjct: 127 DLAEI 131

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A +   +   E L+ NG  +N     G+TPL+LA    H   V +LLKH AD + 
Sbjct: 49  TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D  G     ++++  N D+  +
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEI 131

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 64  LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN 123
           L+P +LL  A+    L V+  A+      D + PN++  T LH A+ G +    ++LI  
Sbjct: 19  LNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158
           G  +N PD+ G TPL+ A     T     L++H A
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
           L  GA  ++ N   D  T LHQA I ++V   ++L+ NG  IN PD +G  PL+ A   G
Sbjct: 60  LERGADINYANV--DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTL 173
           +      L+   A    V+S G  PL +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N   +T L   + G+  +A E L+  G   N  DA G +P++ A   G    + +L++H 
Sbjct: 41  NRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 99
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD + +DS+G  P+ LA+ + ++ +V+ 
Sbjct: 100 ADVNALDSTGSLPIHLAIREGHSSVVSF 127

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N   +T L   + G+  +A E L+  G   N  DA G +P++ A   G    + +L++H 
Sbjct: 39  NRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD + +DS+G  P+ LA+ + ++ +V+ 
Sbjct: 98  ADVNALDSTGSLPIHLAIREGHSSVVSF 125

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 96  NPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           N  DDH  + LH A         E LI+ G +IN  +    TPL+LA   GH   V  LL
Sbjct: 28  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 155 KHKADQHIVDSSGVEPLTLA 174
           ++KAD + V+  G  PL  A
Sbjct: 88  QYKADINAVNEHGNVPLHYA 107

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+ NG  +N  D  G TPL+LA   GH   V +LLK  AD +  D  G     ++++  N
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 180 ADIVTL 185
            D+  +
Sbjct: 81  EDLAEI 86

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 96  NPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           N  DDH  + LH A         E LI+ G +IN  +    TPL+LA   GH   V  LL
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 155 KHKADQHIVDSSGVEPLTLA 174
           ++KAD + V+  G  PL  A
Sbjct: 93  QYKADINAVNEHGNVPLHYA 112

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           D  T LH A         + L+  G  +N     G TPL+LA + GH   V LLL   AD
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
            +     G  P  LA +  + +IV L
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKL 93

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T L  AV  N +   E L+  G  +N  D  GKTPL  +   G++     LL+H A+ + 
Sbjct: 70  TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 163 VDSSGVEPLTLAVEKANADIV 183
            +  G  PL +A +   ++IV
Sbjct: 130 RNLEGETPLIVASKYGRSEIV 150

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95  TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           T  + D RT LH A         E+L+  G+ +N  D  G +PL++A   G    V  LL
Sbjct: 35  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              A  + V+ +G  PL  A  K   +I  +
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 125

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
              L+ NG  +   D  G TPL+LA   GH   V LLL+  AD +  D  G     ++++
Sbjct: 22  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 177 KANADIVTL 185
             N D+  +
Sbjct: 82  NGNEDLAEI 90

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95  TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           T  + D RT LH A         E+L+  G+ +N  D  G +PL++A   G    V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              A  + V+ +G  PL  A  K   +I  +
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 124

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A   N V   EYL+ +G  ++  D  G  PL+ A   GH     LL+KH A  ++
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D     PL  A  K   +I  L
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKL 126

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A   N V   EYL+ +G  ++  D  G  PL+ A   GH     LL+KH A  ++
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D     PL  A  K   +I  L
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKL 128

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A   N V   EYL+ +G  ++  D  G  PL+ A   GH     LL+KH A  ++
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            D     PL  A  K   +I  L
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKL 130

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
              L+ NG  +   D  G TPL+LA   GH   V LLL+  AD    D  G     ++++
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 177 KANADIVTL 185
             N D+  +
Sbjct: 100 NGNEDLAEI 108

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95  TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           T  + D RT LH A         E+L+  G+ +N  D  G +PL++A   G    V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              A  + V+ +G  PL  A  K   +I  +
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +N PD +G TPL  A+  G    V  LL+  AD HI+       L+LA      DIV L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +N PD +G TPL  A+  G    V  LL+  AD HI+       L+LA      DIV L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 33/70 (47%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           R  LH A     +   E+L+L G  IN PD    TPL  A   GH S V LLL   AD+ 
Sbjct: 36  RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 95
Query: 162 IVDSSGVEPL 171
           +    G+  L
Sbjct: 96  VKGPDGLTAL 105

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
           L  G S+D     D  RT LH A         E L+ +G  +N  D    T L+ ATE  
Sbjct: 54  LRAGVSRDARTKVD--RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           H   V LL+K+ AD H           ++++  N D+  +
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 32/67 (47%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           R  LH A     +   E+L+L G  IN PD    TPL  A   GH S V LLL   AD+ 
Sbjct: 41  RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
Query: 162 IVDSSGV 168
           +    G+
Sbjct: 101 VKGPDGL 107

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95  TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
           T  + D RT LH A         E+L+  G+ +N  D  G +PL++A   G    V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              A  + V+ +G  PL  A  K   +I  +
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-30
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-27
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-23
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-19
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	4e-10
2rfa_A	232	Transient receptor potential cation channel subfa	7e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	8e-08
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	6e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  112 bits (280), Expect = 4e-30
 Identities = 57/117 (48%), Positives = 72/117 (61%)

Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           L   +    +LP M  ALA GA  +W N   D+ T L QA   NS++ACE+L+ NG  +N
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D+ G+ PL+ AT LGHT   CL LK  AD    DS G +PLT+A+E ANADIVTL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 15  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS 74
           L   +    +LP M  ALA GA  +W N   D+ T                    L +A+
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNAT-------------------PLIQAT 243

Query: 75  TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG 134
             ++L      L  GA+ +    +   R  LH A I          +  G  +   D++G
Sbjct: 244 AANSLLACEFLLQNGANVN--QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301

Query: 135 KTPLYLATELGHTSQVCLLL 154
           + PL +A E  +   V LL 
Sbjct: 302 RDPLTIAMETANADIVTLLR 321

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  102 bits (256), Expect = 6e-27
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 71  YRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVI---GNSVMACEYLILN 123
           + A    +L  +  A A G       P           LH AV      S+   +++I N
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
           G  ++   A G T L+ A        + LLLK +A    V+ +G   L +A +K + +  
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 184 TL 185
            L
Sbjct: 276 EL 277

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 22/148 (14%)

Query: 17  YRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVIGVNDVSDLSPELLLYR 72
           + A    +L  +  A A G       P           LH AV   N  S          
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---------- 205

Query: 73  ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA 132
                 LP++   +  G   D      D  T LH A + N     + L+     +   + 
Sbjct: 206 ------LPLVDFIIQNGGHLDAKAA--DGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257

Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQ 160
            G+T L +A +  H     LL + +A  
Sbjct: 258 AGETALDIARKKHHKECEELLEQAQAGT 285

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 50  YLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD----WTNPNDDHRTYL 105
           Y+ +           +    L  A    ++  +  A A G          N ++   T L
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173

Query: 106 HQAVI---GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           H AV      S+   ++L+ N   ++    +G T L+      +   + LLL+ KA   I
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233

Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
            + SG  PL +A    +     L
Sbjct: 234 ANESGETPLDIAKRLKHEHCEEL 256

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 22/163 (13%)

Query: 2   VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKD----WTNPNDDHRTYLHQAVIG 57
                    +    L  A    ++  +  A A G          N ++   T LH AV  
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179

Query: 58  VNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
           V+  S    + L+                    S +         T LH   + ++    
Sbjct: 180 VDRTSLHIVDFLVQ------------------NSGNLDKQTGKGSTALHYCCLTDNAECL 221

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
           + L+     I   +  G+TPL +A  L H     LL +  + +
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 81.9 bits (202), Expect = 9e-19
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 65  SPELLLYRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVI---GNSVMAC 117
                L+ A    +L  +  A A G       P           LH AV      S+   
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
           +++I NG  ++   A G T L+ A        + LLLK +A    V+ +G   L +A +K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 178 ANADIVTL 185
            + +   L
Sbjct: 251 HHKECEEL 258

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 9/103 (8%)

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP------DAQGKTPLYLATELG 145
             +          L  A+    +++      NG     P       A  +  L+LA ++ 
Sbjct: 123 HRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA 182

Query: 146 HTSQ---VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           + +    V  ++++        + G   L  A      D + L
Sbjct: 183 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 8e-16
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ A   +NL ++   L  G S    +P  +  T LH A   N V     L+  G   N 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              QG TPL+LA + GH   V LLL  +A+ ++ + SG+ PL L  ++ +  +  +
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 1e-15
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           G S       +   T LH A     +   + L+  G   N  + + +TPL++A   GHT 
Sbjct: 4   GISGGGGG--ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               LL++KA  +        PL  A    + ++V L
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ AS + +LP++ + L  GAS +    N    T LH A         +YL+ N  K+N 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                +TPL+ A  +GHT+ V LLL++ A+ ++  ++G  PL +A  + + + V  
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 27/88 (30%), Positives = 37/88 (42%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                T LH A     V     L+       C   +G TPL++A + G      LLL+  
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A  +    +G+ PL +AV   N DIV L
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 22/89 (24%), Positives = 31/89 (34%)

Query: 97  PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
            +    T LH A           L+      N  +  G TPL+L  + GH     +L+KH
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
                     G  PL +A    N  +V  
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKF 329

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 29/88 (32%), Positives = 44/88 (50%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    T LH       V   + LI +G+ ++     G TPL++A+  G+   V  LL+H+
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +     G  PL  A ++ + DIVTL
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTL 362

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 4e-14
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                T LH A    ++   ++L+ +   +N     G +PL+ A + GHT  V LLLK+ 
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A  + V S G  PL +A       +  +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDV 395

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 7e-10
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL---L 154
                + LHQA           L+ NG   N   + G TPL +A  LG+ S   +L    
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 155 KHKADQHIVDSSGVEPL 171
              +   + D   +   
Sbjct: 401 DETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
            G+        G TPL++A+ +GH   V  LL+  A  ++ +     PL +A    + ++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 183 VTL 185
              
Sbjct: 63  AKY 65

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 3e-15
 Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 44  NDDHRTYLHQAVI-GVNDV--SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDD 100
           N   ++ +  A    + +    +     LL  A+   +L  +   LAL            
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINF--KQPQS 210

Query: 101 HRTYLHQAVI---GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           H T LH AV           E L+  G  +N  +    TPL++A E  H   + +L KH 
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A  + +DS G   L  A    +     L
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRL 298

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 19  ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN 78
           A+   +L  +   LAL            H T LH AV  ++       ELLL +      
Sbjct: 185 AAREADLAKVKKTLALEIINF--KQPQSHETALHCAVASLHPKRKQVAELLLRK------ 236

Query: 79  LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPL 138
                     GA+ +  N   D  T LH A         E L  +G K+N  D+ G+T L
Sbjct: 237 ----------GANVNEKN--KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284

Query: 139 YLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           + A   GH     LLL + +D  I+   G     +  E   
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ 325

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.1 bits (165), Expect = 9e-14
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 1/102 (0%)

Query: 84  HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
                 A    T         L  A  GN       L    +  +  D +  TPL+LA  
Sbjct: 9   DLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67

Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                 V LLL+H AD H  D  G+ PL  A    + ++  L
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 22/88 (25%), Positives = 33/88 (37%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +      LH A         E L+ +G  +N  D    TPL+ A          LLL H 
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD  +V+  G   + +A      + +T 
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTY 175

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.2 bits (160), Expect = 4e-13
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           LL  A + +   +M     L  +   ++      T LH A   N V   + L+ +G  ++
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASD--GRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D  G  PL+ A   GH     LLLKH A  + +D     PL  A  K   ++ +L
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.1 bits (139), Expect = 3e-10
 Identities = 13/85 (15%), Positives = 29/85 (34%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    T LH+A   N V  C  L+ +G      +  GK+ + +A       ++    K  
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 158 ADQHIVDSSGVEPLTLAVEKANADI 182
           +       + +  +   +     + 
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINF 205

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.4 bits (166), Expect = 5e-15
 Identities = 34/90 (37%), Positives = 42/90 (46%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
             N    T LH A I   + + EYL+ NG   N  D  G TPL+ A   GH   V LLL+
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           HKA  +        PL  A +  + DIV L
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.9 bits (162), Expect = 2e-14
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ AS   ++P + + L  G+  +  +      T LH+A     +   E L+ +   +N 
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKD--HAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              Q  +PL+ A + GH   V LLL + A ++ V+  G+ P+    +++   ++ L
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
              + + LH A     V   + L+  G   N  +  G  P+    +    S + L  K++
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 158 AD 159
           + 
Sbjct: 133 SS 134

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.1 bits (162), Expect = 9e-15
 Identities = 25/90 (27%), Positives = 37/90 (41%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
           +   D    L +A           L+ NG  +   D  G TPL+LA   GH   V LLL+
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             AD    D  G     ++++  N D+  +
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
           + +  T LH A     +   + L+  G  +   D  GKT   ++ + G+     +L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 9e-15
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D  ++ LH A   N+V A   L+ NG   +  + + +TPL+LA   G      +LL H 
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A++ I D     P  +A E+ + DIV L
Sbjct: 214 ANRDITDHMDRLPRDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 8e-12
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 44  NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
             D  T L  A      +   + E      + + +       +  GAS      +    T
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF------IYQGASLHNQT-DRTGET 59

Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQHI 162
            LH A   +   A + L+      N  D  G+TPL+ A          +L++++A D   
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
               G  PL LA   A   ++  
Sbjct: 120 RMHDGTTPLILAARLAVEGMLED 142

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 21/88 (23%), Positives = 38/88 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             D  T L  A         E LI +   +N  D  GK+ L+ A  + +     +LLK+ 
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A++ + ++    PL LA  + + +   +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKV 208

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ A+ V+N+      L  GA+KD  N  +   T L  A    S    + L+ +    + 
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDI 218

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
            D   + P  +A E  H   V LL      
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.6 bits (164), Expect = 1e-14
 Identities = 25/88 (28%), Positives = 37/88 (42%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
               RT LH A         E L+ +G  +N  D    T L+ ATE  H   V LL+K+ 
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD H           ++++  N D+  +
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.1 bits (160), Expect = 5e-14
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
             +    + LH A         E L+  G+  +      +TPL++A   GH + V +LLK
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           H AD +  D   +  L  A E  + ++V L
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVEL 118

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.7 bits (146), Expect = 5e-12
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           D    L +A           L+ NG      D  G +PL+LA + GH S   +LL+    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
           +         PL +A  + +A+IV +
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEV 85

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
           +    T LH A   N     E LI  G  ++      KT   ++ + G+     +L
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D  ++ LH A   N+V A   L+ NG   +  + + +TPL+LA   G      +LL H 
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A++ I D     P  +A E+ + DIV L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRL 209

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    T LH A   +   A + L+      N  D  G+TPL+ A          +L++++
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
           A D       G  PL LA   A   ++  
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLED 110

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 21/88 (23%), Positives = 38/88 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             D  T L  A         E LI +   +N  D  GK+ L+ A  + +     +LLK+ 
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A++ + ++    PL LA  + + +   +
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKV 176

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 111 GNSVMACEYLILNGLKI-NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE 169
           G++       I  G  + N  D  G+T L+LA     +     LL+  AD +I D+ G  
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 170 PLTLAVEKANADIVTL 185
           PL  AV      +  +
Sbjct: 61  PLHAAVSADAQGVFQI 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.4 bits (127), Expect = 6e-09
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N+   T L  A    S    + L+ +    +  D   + P  +A E  H   V LL ++ 
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 158 AD 159
             
Sbjct: 215 LV 216

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.0 bits (165), Expect = 1e-14
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
              +HQ      ++     I     IN  D +G TPL  A   G  + V  LL++ AD  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
           ++       L+LA  K   DIV +
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKM 87

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 23/88 (26%), Positives = 33/88 (37%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                + L  A         + L+  G+ +N  D  G TPL  A    H   V +LL+  
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD  I   SG   + LAV      +  +
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQV 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 1e-12
 Identities = 23/88 (26%), Positives = 37/88 (42%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +++  T L  A     +   E+L+ NG          ++ L LA   G+T  V +LL   
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D +  D +G  PL  AV   +   V +
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + +  T L  AV GN V   + L+ +G         G   + LA  LG+ S   ++  H 
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

Query: 158 AD 159
             
Sbjct: 159 LK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 7/52 (13%), Positives = 15/52 (28%)

Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               ++     G    +   ++ +   +  D  G  PL  A       +V  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 97  PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLK 155
            N +  T LH A I   +   E L+  G  +N  +   G+T L+LA +L +   V LLLK
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             AD + V   G  P  L   + +  I   
Sbjct: 173 CGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 1/114 (0%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ AS    L ++   ++LGA  +      + RT LH AV   +      L+  G  +N 
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
              QG +P  L      T     L +   +   +     +  +   E    +  
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.7 bits (156), Expect = 6e-13
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N+  +T LH AVI N     E L+  G      D +G TPL+LA E G  + V +L +  
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101

Query: 158 ADQHIV------DSSGVEPLTLAVEKANADIVTL 185
              H+       + +G   L LA       IV L
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 31/88 (35%), Positives = 46/88 (52%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N D  T LHQA I ++V   ++L+ NG  IN PD +G  PL+ A   G+      L+   
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A    V+S G  PL +A E+A  +++  
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQN 157

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 21/88 (23%), Positives = 31/88 (35%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                T LH A         + LI     +N  D  G TPL+ A   G      +L+++ 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D   V+  G     +A E     +  L
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEEL 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 20/90 (22%), Positives = 30/90 (33%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
               D       A           L+  G  IN  +  G T L+ A    +   V  L++
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           + A+ +  D+ G  PL  A      DI   
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEY 124

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.6 bits (135), Expect = 8e-10
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +   +          S    E  ++   K       G   L  A   G T +V  LL+  
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERG 63

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +  +  G+  L  A    N D+V  
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKF 91

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             D      +        A ++L    +        G T L++A   G+T  + LL++ +
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D +I D  G  PL  A      +   +
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRI 250

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV-CLLLKH 156
           +++    LH A     +   EYLI  G  +   +++G TPL +A E      +   + + 
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 157 KADQHIVDSSGVEPLTLAVEK 177
             D           +     +
Sbjct: 163 GVDIEAARKEEERIMLRDARQ 183

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 15/62 (24%), Positives = 21/62 (33%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + D  T LH A       AC  L+ N   +   +  G+T   +A E        L  K  
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

Query: 158 AD 159
             
Sbjct: 289 LL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +   DA+ K    L   +G  + +   +  +    +    G   L  A    + + V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLR 58

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 37  SKDWTNPNDDHRTYLHQAVIG----------VNDVSDLSPELLLYRASTVHNLPVMCHAL 86
           S D      D                      + VSD SP   ++ A+   +   + + +
Sbjct: 23  SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP---MHEAAIHGHQLSLRNLI 79

Query: 87  ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH 146
           + G + +      DH + LH+A +G  +   + L+ +G ++N   A   TPL+ A   G 
Sbjct: 80  SQGWAVNIIT--ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137

Query: 147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              V LLL+H A     +S    P+  A  + + + V  
Sbjct: 138 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNS 175

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.8 bits (159), Expect = 5e-13
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
            P  D  + +H+A     V     LI  G  I+   +   TPLYLA E    + V  LL+
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             AD +        PL   V  A+ ++  L
Sbjct: 212 SGADVNQ-GKGQDSPLHAVVRTASEELACL 240

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
           N      + LH  V   S      L+  G      +A+GK P+ L       +Q+  L +
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLER 275

Query: 156 HKAD 159
             A 
Sbjct: 276 EGAS 279

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.5 bits (161), Expect = 4e-14
 Identities = 29/88 (32%), Positives = 38/88 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                T LH A   N V   EYL+ +G  ++  D  G  PL+ A   GH     LL+KH 
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A  ++ D     PL  A  K   +I  L
Sbjct: 99  AVVNVADLWKFTPLHEAAAKGKYEICKL 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.7 bits (146), Expect = 6e-12
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
             N +    L +A     V   + L  +  +     + +  TPL+ A      S V  LL
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +H AD H  D  G+ PL  A    + ++  L
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +      LH A         E L+ +G  +N  D    TPL+ A   G      LLL+H 
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD    +  G  PL L  +  + DI  L
Sbjct: 132 ADPTKKNRDGNTPLDLVKDG-DTDIQDL 158

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.2 bits (165), Expect = 5e-14
 Identities = 34/145 (23%), Positives = 47/145 (32%), Gaps = 5/145 (3%)

Query: 42  NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
           +   D               +  +P      +                   +  N   D 
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAP--AAVDSQPNPENEEEPRDEDWRLQLEAEN--YDG 158

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKHKADQ 160
            T LH AVI         L   G  +N P+   G+TPL+LA E    S + LLLK  AD 
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

Query: 161 HIVDSSGVEPLTLAVEKANADIVTL 185
                 G  PL  A+ + N  +  L
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARL 243

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 1/114 (0%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ A    +  ++      GA  +        RT LH AV   +    E L+  G     
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPE-PTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
               G+TPL  A    +     LL  H A +       + P + +   +++D  
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 86  LALGASKDWTN-PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
           L   A  ++ +  ND  +T LH A I       E L   G  +   +  G T L+LA  +
Sbjct: 29  LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88

Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              +  C+LL+ +       S      +       +     
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.7 bits (164), Expect = 6e-14
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           GA  D  +     R+ L  AV  NS+   + L+ +G  +N     G + L+ A+  G   
Sbjct: 139 GADIDAVDIKSG-RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            V  L++  AD  + +     PL +A  +   DI+  
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLI----LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
           ++D  T LH AV+  ++ A   L+      G +++  +   +TPL+LA      S V LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +   A    +D  G     LA E  +   +  
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N+  +T LH AVI         L+  G      D  G+T  +LA E    + +  LL   
Sbjct: 43  NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102

Query: 158 ADQH----IVDSSGVEPLTLAVEKANADIVTL 185
           A         +  G+  L +AV     + V L
Sbjct: 103 APGTLDLEARNYDGLTALHVAVNTECQETVQL 134

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG----LKINCPDAQGKTPLYLATELGHTSQVCLL 153
           +   +T  H A    S      L+ +     L +   +  G T L++A        V LL
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 154 LKHKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
           L+  AD   VD  SG  PL  AVE  +  +V L
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 10/61 (16%), Positives = 18/61 (29%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                + LH A     +     L+ +G   +  +    TPL +A        +       
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

Query: 158 A 158
           A
Sbjct: 240 A 240

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.0 bits (157), Expect = 6e-14
 Identities = 27/86 (31%), Positives = 37/86 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
            +  R  LH A     +   E+L+L G  IN PD    TPL  A   GH S V LLL   
Sbjct: 37  LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
           AD+ +    G+        +A   ++
Sbjct: 97  ADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.5 bits (135), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 32/88 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                     A+    +   +  +  G  +N     G+ PL+ A + G    +  LL   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +  D   + PL  AV + +   V L
Sbjct: 64  ADINAPDKHHITPLLSAVYEGHVSCVKL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 52  HQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG 111
                     + L+P +LL  A+    L V+  A+          PN++  T LH A+ G
Sbjct: 7   KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS--QPNEEGITALHNAICG 64

Query: 112 NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS-GVEP 170
            +    ++LI  G  +N PD+ G TPL+ A     T     L++H A       S G   
Sbjct: 65  ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124

Query: 171 LTLAVEKAN 179
                    
Sbjct: 125 FEKCDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 118 EYLILNGLKINCPD---AQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
             ++                   L  A   G    V   +K   D    +  G+  L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 175 VEKANADIVTL 185
           +  AN  IV  
Sbjct: 62  ICGANYSIVDF 72

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L  +S      ++   +          PND+  T LH AV        ++L+  G+ +N 
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE---PLTLAVEKANADIVTL 185
            D+ G TPL+ A    +      L++  A    +  S ++        +E+        
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 20/88 (22%), Positives = 33/88 (37%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
             N      L  + +       + +I      + P+ +G T L+ A   GHT  V  L++
Sbjct: 32  KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIV 183
              + +  DS G  PL  A    N  + 
Sbjct: 92  FGVNVNAADSDGWTPLHCAASCNNVQVC 119

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 97  PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           P    +  L      N        I +G+++   +      L  ++  G    V  ++  
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D  + +  G+  L  AV   + +IV  
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKF 88

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKIN---CPDAQGKTPLYLATELGHTSQVCLLL 154
           + D  T LH A   N+V  C++L+ +G  +      D Q         E G+T     L 
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159

Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADI 182
             +    I++   +  L     + + ++
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.2 bits (155), Expect = 2e-13
 Identities = 28/86 (32%), Positives = 42/86 (48%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           ++   T L+ A     +   E L+ NG  +N  DA G TPL+LA  +GH     +LLKH 
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
           AD +  D  G     +++   N D+ 
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLA 129

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 59.7 bits (146), Expect = 4e-12
 Identities = 32/86 (37%), Positives = 42/86 (48%)

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           D    L +A           L+ NG  +N  D  G TPLYLAT  GH   V +LLK+ AD
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
            + VD+ G  PL LA    + +I  +
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEV 98

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           +    T LH A     +   E L+ +G  +N  D  GKT   ++   G+     +L K 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 37.7 bits (89), Expect = 4e-04
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
            +   +G       +     L  A   G   +V +L+ + AD +  D  G+ PL LA   
Sbjct: 5   HHHHHHG-------SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 178 ANADIVTL 185
            + +IV +
Sbjct: 58  GHLEIVEV 65

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 24/88 (27%), Positives = 31/88 (35%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             +  + L  A  G        L+   + IN  D  G TPL  A    H   V  LL   
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD      SG  P+ LAV      +  +
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQV 153

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 7e-13
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           ++   T L  A     +    +L+  G   +    + ++ L LA+  G+T  V LLL+  
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D +I D +G  PL  AV   +   V  
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNHVKCVEA 120

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 8e-13
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 102 RTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
              +HQ      +   +  +  G   +N PD +G TPL  A+  G    V  LL+  AD 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 161 HIVDSSGVEPLTLAVEKANADIVTL 185
           HI+       L+LA      DIV L
Sbjct: 63  HILAKERESALSLASTGGYTDIVGL 87

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.0 bits (131), Expect = 9e-10
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + +  T L  AV GN V   E L+  G  +      G TP+ LA  LG+     ++  H 
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 158 ADQHIVDSSG 167
                 +   
Sbjct: 159 LKLFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQ-HIVDSSGVEPLTLAVEKANADIVTL 185
               ++     G   Q+   L+   +  +  D  G  PL  A      + V  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRF 54

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 28/88 (31%), Positives = 39/88 (44%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D   + LH A         E LI+ G +IN  +    TPL+LA   GH   V  LL++K
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD + V+  G  PL  A       +   
Sbjct: 96  ADINAVNEHGNVPLHYACFWGQDQVAED 123

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 19/88 (21%), Positives = 28/88 (31%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    T LH A         + L+     IN  +  G  PL+ A   G       L+ + 
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A   I +  G  P+  A       +   
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           + +    +       + +A    + N    +N  D  G +PL+ A   G ++ V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            A  ++++     PL LA    + DIV  
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQK 90

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N+     LH A         E L+ NG  ++  +  G+ P+  A             K  
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 158 AD 159
            +
Sbjct: 162 QN 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 3e-13
 Identities = 26/88 (29%), Positives = 38/88 (43%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + + R+ LH A     V  C  L+  G  I+      +TPL  A E  H   V  L+K  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A     D+ G   L LA +K + ++V  
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 5e-13
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +++    LH A     V   E L+     ++  +  G +PL++A        V L L   
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +D  + +  G  PL  A   +       
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQ 228

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 25/88 (28%), Positives = 35/88 (39%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D   T +  A     V   + L+  G  IN  D +    L+ A   G      +LL  K
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D H V+  G  PL +A  +   D V L
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVL 195

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           + +  T LH A         +YL+ NG   +NC D  G TP+  ATE  H   V LLL  
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            +D +I D+     L  A      DI  +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEI 162

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           ++D RT L +A   N + A +YLI  G  ++  DA+G T L+LA + GH   V  LL + 
Sbjct: 41  SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
             D +  D  G  P+  A E  + D+V L
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 9e-09
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    + LH A   N        +     +   + +G+TPL  A+          + K  
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 158 ADQ 160
            D 
Sbjct: 234 QDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                   ++PL+ A E GH     +L++  A+          PL  A E  + + V  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 31/180 (17%), Positives = 52/180 (28%), Gaps = 14/180 (7%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI---------GVNDVSDLSP 66
           ++RA                   D     D   T   +                    S 
Sbjct: 16  VFRALYTFEPRTPDELYIEEG--DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI 73

Query: 67  ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GL 125
           +  L+ A+   NL  +   L      +  +      T L+ A  G      E L     +
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGVNGLD--KAGSTALYWACHGGHKDIVEMLFTQPNI 131

Query: 126 KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           ++N  +  G T L+ A   G+   V LLL   A   + +        +A   A A ++  
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 12/80 (15%), Positives = 26/80 (32%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    T LH A         + L+  G + +  + + K    +AT     S +       
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 158 ADQHIVDSSGVEPLTLAVEK 177
           A + + ++        +  +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 5/82 (6%)

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           +  + +A+        + L +    I        T  +  T  G        L       
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA 67

Query: 162 IVDSSGVEPLTLAVEKANADIV 183
               S   PL  A ++ N   +
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWL 89

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 6/56 (10%), Positives = 13/56 (23%)

Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
             P   G+  ++ A           L   + D   +             K    ++
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 20/88 (22%), Positives = 36/88 (40%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +  +RT L  A +     A + L+ N  K+   D +G T L  A +         LL   
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           ++ +  D SG  PL  ++    +++   
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.0 bits (152), Expect = 1e-12
 Identities = 20/88 (22%), Positives = 42/88 (47%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +   +T L  ++I        +L+ +G  +N  + +G+TPL +A++ G +  V  LL+  
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD    D +G+     A      +++ +
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKI 185

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 42/88 (47%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + +  T L  AV  N +   E L+  G  +N  D  GKTPL  +   G++     LL+H 
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A+ +  +  G  PL +A +   ++IV  
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKK 152

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.4 bits (127), Expect = 5e-09
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N +  T L  A         + L+  G  I+  D  G T    A   G    + +  + +
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

Query: 158 A 158
            
Sbjct: 191 R 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           G+  D      +           +     ++L       N  D+  +TPL +A  LG  +
Sbjct: 1   GSHMD-----KNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMEN 49

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            +  L+++       D  G   L  AV+     I   
Sbjct: 50  AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK 86

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPND-DHRTYLHQAVIGNSVMACEYLILNGLKIN 128
            Y A   +N+ ++C  L  GA       N  ++   LHQA         + L+ +GL  +
Sbjct: 35  SYYAIADNNVRLVCTLLNAGA-----LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE-PLTLAVEKANADIVTL 185
             D +G T LY A + G+   V L +K          +G +     AV   +  IV+ 
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    +  + A+  N+V     L+  G   N  +   + PL+ A  L  T  V +LL   
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D    D  G   L  AV+  N   V L
Sbjct: 86  LDDSQFDDKGNTALYYAVDSGNMQTVKL 113

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
                +       +T  + AV+ N V    Y +          A   + +++  + GH  
Sbjct: 118 NWRLMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVD 175

Query: 149 QVCLLLKHKADQHIVDSSGVEP-LTLAVEKANADIVTL 185
            + LLL +    +  +S    P + LA++  + +++  
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA 213

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
           L +     S        L+       D  G +  Y A    +   VC LL   A +++++
Sbjct: 4   LSRINTWKSKQL--KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 165 SSGVEPLTLAVEKANADIVTL 185
                PL  A    +  IV +
Sbjct: 62  --NEFPLHQAATLEDTKIVKI 80

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 8/96 (8%), Positives = 26/96 (27%), Gaps = 10/96 (10%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
             S +  N +      +  A+    +   + L    + I        +       L    
Sbjct: 184 MTSTNTNN-SLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAE 235

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
              ++++   +      +    L +       +I++
Sbjct: 236 IAKMIIEKHVEYKSDSYTK--DLDIVKNNKLDEIIS 269

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.8 bits (154), Expect = 5e-13
 Identities = 32/86 (37%), Positives = 43/86 (50%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             D    L +A           L+ NG  +N  DA G TPL+LA   GH   V +LLK+ 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
           AD + VD +G+ PL LA    + +IV
Sbjct: 71  ADVNAVDHAGMTPLRLAALFGHLEIV 96

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.0 bits (152), Expect = 1e-12
 Identities = 32/88 (36%), Positives = 42/88 (47%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    T LH A     +   E L+ NG  +N  D  G TPL LA   GH   V +LLK+ 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +  D  G  PL LA    + +IV +
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEV 131

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 61.6 bits (151), Expect = 1e-12
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    T L  A +   +   E L+ NG  +N  D +G TPL+LA   GH   V +LLK+ 
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +  D  G     ++++  N D+  +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 4e-08
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           + +  T LH A +   +   E L+ NG  +N  D  GKT   ++ + G+     +L K 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +   +     L  A   G   +V +L+ + AD +  D+SG  PL LA    + +IV +
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.8 bits (154), Expect = 5e-13
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N   RT L    +GN  +A   L+L G   +  D  G   ++ A   G    +  LL+ +
Sbjct: 35  NGFGRTALQVMKLGNPEIA-RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +I D+ G  PL LA ++ +  +V  
Sbjct: 94  ADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.7 bits (146), Expect = 6e-12
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
            +     L  A     +     L+ N + +N  +  G+T L +    G+      LL   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A+  + D +G   +  A      D +  
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQT 88

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +      +H A     +   + L+     +N  D +G  PL+LA + GH   V  L+KH 
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
           A +    +  G     LA      ++V+L
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 1e-07
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           +++    LH A     +   E+L+ +    +   + +G T   LA   G    V L+  +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

Query: 157 KA 158
            A
Sbjct: 160 GA 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           GA  D     D + T LH A     +     L+  G   +  D +G + ++LA + GHTS
Sbjct: 65  GAIVDQLG-GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKAN-ADIVTL 185
            V  L+    D  ++D +G+ PL  A  + +  D   L
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 61.3 bits (150), Expect = 5e-12
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 70  LYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           L  A+   H++      L    S +  +      T LH AV+  +      L+  G  ++
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
             + +G++ L LA +  +   +  L + +  +
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
           + +D     + +A        C  L+  G  +  PD +  T L+ A        V   + 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 156 HKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
             A    +       PL  A  + +  +V  
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC-LLLKH 156
           + +  + +H A          YLI  G  ++  D  G TPL  A    H+     LLL  
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 157 KADQHIVDSS-GVEPLTLAVEKANADIVTL 185
               ++ D       L  AV   N  +++L
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLILNGLKIN 128
           ++ A+   +  ++ + +A G   D  +   +  T L  A    +SV     L+   + +N
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMD--QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 129 CPD-AQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             D     T L+ A   G+T+ + LLL+  A+    +  G   L LA ++ N  ++  
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 8e-07
 Identities = 12/59 (20%), Positives = 19/59 (32%)

Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +   D      +  AT+ G   +   L++   D    D   V  L  A      D+V  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.0 bits (152), Expect = 9e-13
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N   +T L   + G++ +A   L+  G   N  D  G +P++ A   G    + +L++H 
Sbjct: 33  NRFGKTALQVMMFGSTAIA-LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD ++ D +G  P+ LAV++ +  +V+ 
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSF 119

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.3 bits (150), Expect = 1e-12
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +    + +H A     +   + L+ +G  +N PD  G  P++LA + GHT+ V  L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +D H  D+ G+ PL LA+++   D+V +
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           +      +H AV         +L      ++  DA+G TPL LA + G    V +L  H
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 1e-12
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             +    L  A   ++    E L     +++  D +G TPL +A           L+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD ++ +S    P   A  +   +I+  
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAY 90

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 61.3 bits (150), Expect = 3e-12
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           LL  A+      V           D  +   +  T L+ AV  N +   + LI  G  IN
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVD--TEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQHIVDSSGVEPLTLAVEKANADIVTL 185
             ++   +P   A   G T  +  +LKH   D +  +  G   L  A EK + D V L
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGL-KINCPDAQGKTPLYLATEL-----GHTSQVC 151
           N      L  A     +   + L+ +G   I+  +  G T L  A  L      +   V 
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           LL+++ ADQ I D+SG   +  A +K   +I  +
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
           N    +    A          Y++ +    +N  +  G   L  A E GH   V LLL+ 
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 157 -KADQHIVDSSGVEPLTLAVEKANA-----DIVTL 185
            + D    +  G   L  AV          DIV L
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.0 bits (118), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 98  NDDHRTYLHQAVIGNSVMAC-----EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
           ND   T L +AV             + L+ NG   +  D  G+T +  A + G+T    +
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196

Query: 153 LLKH 156
           L ++
Sbjct: 197 LAQY 200

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATEL 144
           L  GA+ +   PN   R  +   ++G++ +A E L+L+G + NC D    T P++ A   
Sbjct: 32  LEAGANPN--APNSYGRRPIQVMMMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           G    + +L +  A   + D+ G  P+ LA E  + D+   
Sbjct: 89  GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.5 bits (140), Expect = 3e-11
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 28/152 (18%)

Query: 32  LALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91
           L  GA+ +   PN   R  +   ++G   V+    ELLL                  GA 
Sbjct: 32  LEAGANPN--APNSYGRRPIQVMMMGSARVA----ELLLLH----------------GAE 69

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151
            +  +        +H A     +     L   G +++  DA G+ P+ LA ELGH     
Sbjct: 70  PNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
            L          +        +   +  +DI 
Sbjct: 129 YLRAAAGGTRGSN-----HARIDAAEGPSDIP 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKH 156
             +    L +AV    V   + L+  G  +N  + + G TPL+ A ++     V LLL+H
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            AD  +   +G  P  LA    +  ++ L
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKL 90

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
           L  GA+ ++    +   T LH AV  +     E L+ +G         G TP  LA   G
Sbjct: 25  LEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83

Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               + L L   AD +  D  G      A        +  
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 98  NDDHRTYLHQAVIGNSVMAC----EYLILNGLKINCPDAQGKTPLYLATELGHTSQV-CL 152
           ++  R  L  A++ +           L+ +G  +N    +GKTPL LA E  H   V  L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           L +   + +  DS G   L LAVE     I  L
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQ- 149
           +D         T L  A     V   + L+   G  +N  D  G+  L  A      S  
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 150 ---VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
                LLL H AD ++    G  PL LAVEK +  +V
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 4e-11
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             +  T    A I  SV   +  +  G  +N  D  G T    A   G    +  L K  
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 158 ADQHIVDSSGVE----------PLTLAVEKANADIVTL 185
           A+ ++   +  +           L  A EK + +++ +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD----------AQGKTPLYLATELGHT 147
           +    T   +A +   V A ++L   G  +N               G T L  A E GH 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 148 SQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIV 183
             + +LL    AD +  D+ G   L  A+  ++   V
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
            +  +T L  AV    +   + L+    ++IN  D+ GKT L LA EL       LL K 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 157 KADQHIVD 164
            A     D
Sbjct: 276 GASTDCGD 283

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.4 bits (148), Expect = 2e-12
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           GA  +  +   + RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH  
Sbjct: 25  GADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            V LLL+  AD +  D +G  PL LA    + ++V L
Sbjct: 83  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 1e-11
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           + RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH   V LLL+  AD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 160 QHIVDSSGVEPLTLAVEKANADIV 183
            +  D +G  PL LA    + ++V
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVV 84

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 4e-08
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + + RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH   V LLL+  
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 158 A 158
           A
Sbjct: 125 A 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           G+TPL+LA   GH   V LLL+  AD +  D +G  PL LA    + ++V L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.1 bits (147), Expect = 3e-12
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATEL 144
           L  GA  +    N   R  +   ++G++ +A E L+L+G + NC D    T P++ A   
Sbjct: 32  LEAGADPN--ALNRFGRRPIQVMMMGSAQVA-ELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           G    + +L +  A   + D+ G  P+ LA E+ + DI   
Sbjct: 89  GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                  L  A     V     L+  G   N  +  G+ P+ +    G      LLL H 
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG 67

Query: 158 ADQHIVDSSGV-EPLTLAVEKANADIVTL 185
           A+ +  D + +  P+  A  +   D + +
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVV 96

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

Query: 32  LALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91
           L  GA  +    N   R  +   ++G   V+    ELLL                  GA 
Sbjct: 32  LEAGADPN--ALNRFGRRPIQVMMMGSAQVA----ELLLLH----------------GAE 69

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151
            +  +        +H A     +     L   G +++  DA G+ P+ LA E GH     
Sbjct: 70  PNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

Query: 152 LLLKHKAD 159
            L     D
Sbjct: 129 YLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           I+         L  A   G    V  LL+  AD + ++  G  P+ + +   +A +  L
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAEL 62

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKH 156
           +++ RT L       S      L   G  ++  D + G T L++A        V  L++ 
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            AD  + D  G+  L LA E         
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGN 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
           +   ++ T    A       A   L+     ++  D  G+T L     LG    V LL +
Sbjct: 39  DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97

Query: 156 HKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
             AD    D   G+  L +A      ++V  
Sbjct: 98  AGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 5e-11
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
              GA  D  +      T LH A         E L+  G  I   D +G T L LA E+ 
Sbjct: 96  AEAGADLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154

Query: 146 HTSQVCLLLKHKAD 159
            T+     ++    
Sbjct: 155 KTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             +               +          +    ++ +TP + A        +  LL   
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL-ED 66

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D   VD +G   L       +   V L
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRL 94

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
           +N +  +    +G     +  + GH+          AD   V S    P   A  KA+  
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58

Query: 182 IVTL 185
            ++ 
Sbjct: 59  ALSQ 62

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 20/88 (22%), Positives = 32/88 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
              +    + A  G      E ++ +       D   +T L+ A   GHT  V  LL+  
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
              +  D +G  PL +A      +IV  
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKA 91

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 27/88 (30%), Positives = 40/88 (45%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + D RT LH A         E+L+  G+ +N  D  G +PL++A   G    V  LL   
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A  + V+ +G  PL  A  K   +I  +
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVM 124

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 20/88 (22%), Positives = 34/88 (38%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D   + LH A         + L++ G  +N  +  G TPL+ A          +LL+  
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           A+    D      +  A  K N  +V +
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHI 157

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ A++     ++   L  GA  +    N +  T LH A   N       L+  G   + 
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D    T ++ A   G+   V +LL +KA  +I D+ G  PL LA ++   +    
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 44  NDDHRTYLHQAVI-------------GVN-DVSDLSPELLLYRASTVHNLPVMCHALALG 89
           +D   + LH A               G + +  + +    L+ A++ +   +    L  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 90  ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ 149
           A+ D    +    T +H+A    ++     L+      N  D +G TPL+LA +     +
Sbjct: 130 ANPD--AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187

Query: 150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              L+   A  +I +     PL +A  K    ++  
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILK 221

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
               RT LH A   +++   +YL+   G   +  D  GKTP+ LA + G    V  L++ 
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            A    VD++      LA    + +IV +
Sbjct: 336 GASVEAVDATDHTARQLAQANNHHNIVDI 364

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 33/178 (18%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
             +     N  +             T P  +    LH    G   ++    E +      
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQ--IPTEPEPESPIKLHTEAAGSYAIT----EPITRE--- 115

Query: 76  VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK--------I 127
                          +         +RT LH     +S    E LI++  K        +
Sbjct: 116 -------------SVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159

Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           N  D    TPL LA        V  L+K  AD  I + S    L  A    +  ++  
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           ++D +T +  A     +    YLI  G  +   DA   T   LA    H + V +  + +
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 158 ADQ 160
            ++
Sbjct: 370 PER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 42  NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
                +RT LH      N  ++ S +L+++ A            +A GA  +  +   D 
Sbjct: 120 IDPRHNRTVLHWIAS--NSSAEKSEDLIVHEAKEC---------IAAGADVNAMD--CDE 166

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK---A 158
            T L  AV+        YL+  G      +   ++ L+ A        +  +L       
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 159 DQHIVDSSGVEPLTLAVEKANADIV 183
           D   +D +G+  L +       D V
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQV 251

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 8/88 (9%), Positives = 21/88 (23%), Gaps = 2/88 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
                    Q     +    ++   N      P+ +    L+     G  +    + +  
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRES 116

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
            +  I        L      ++A+    
Sbjct: 117 VNI-IDPRHNRTVLHWIASNSSAEKSED 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.5 bits (148), Expect = 9e-12
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLK--INCPDAQGKTPLYLATELGHTSQVCLLLK 155
           +D   T  H A    ++   + L    LK  +N    QG T L+LA           L++
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           + A   I D     PL  A    +  ++ L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIEL 158

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 102 RTYLHQAVI-GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD- 159
              LHQA +        E L      +   D  G+ PL+ +           LL    + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 160 --QHIVDSSGVEPLTLAVEKANADIVTL 185
                 D SG  P  +A    N ++V  
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKS 90

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.2 bits (142), Expect = 5e-11
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH- 156
            +   T LH AV        ++LI NG  +   D   + PL+ A  +G    + LL    
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
           K+  +  D  G  PL  A+ + + D   L
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ---GKTPLYLATELGHTSQVCLLL 154
           + D R  LH +V   +     +L+     +N  D     G TP ++A  +G+   V  L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

Query: 155 KH--KADQHIVDSSGVEPLTLAVEKANADIVTL 185
               K D + + + GV  L LAV K   ++   
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGL-KINCPDAQGKTPLYLATELGHTSQV-CLLLK 155
           +  ++  LH+A    S+   E L   G   +N  D QG TPL+ A   GH      L+ K
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADI 182
           + A+  +VD+ G +   +A+ +     
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 134 GKTPLYLATELGHTSQVC-LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              PL+ A       +V  LL    +     D  G  PL  +V     +I + 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 54

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 14/134 (10%)

Query: 44  NDDHRTYLHQAVI-GVNDVSDLSPELLLYRASTVHNLPVMCH--ALALGASKDWTNPNDD 100
           +++H   L+ +V   +  ++    + LL +           H     L     W      
Sbjct: 241 DNEHTVPLYLSVRAAMVLLT----KELLQKTDVFLIQACPYHNGTTVLPDRVVW------ 290

Query: 101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
              ++  A   +     + L     ++      G        +    +   + L   A  
Sbjct: 291 -LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

Query: 161 HIVDSSGVEPLTLA 174
                S      ++
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           +D++   +H A           LI  G+     +  G T L+LA + G       L    
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
               +    G +P+ LAV     D+V  
Sbjct: 77  EVHSLWH--GQKPIHLAVMANKTDLVVA 102

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 5e-11
 Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLI-------------LNGLKINCPDAQGKTPLYLATEL 144
           +++H   L+ +V    V+  + L+              NG  +          +  A + 
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                + LL +   +     ++G        +KA   +  +
Sbjct: 301 SKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 6e-11
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 31/156 (19%)

Query: 44  NDDHRTYLHQAVI-GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR 102
           +    T L +A+     +      +L++    +                 D    N    
Sbjct: 170 DKADETPLMRAMEFRNREAL----DLMMDTVPSKS-----------SLRLD--YANKQGN 212

Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           ++LH A++ N        +  G+ +N  D +   PLYL+           LL+      I
Sbjct: 213 SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 163 V-------------DSSGVEPLTLAVEKANADIVTL 185
                             ++ +  A + +  +++ L
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 98  NDDHRTYLHQAVIGNSVMA--CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL- 154
           +   +T LH  V          + L+  G      D   +TPL  A E  +   + L++ 
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 155 ----KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               K        +  G   L  A+     D+   
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    T LH A     V   +YL   G   +     G+ P++LA     T  V  L++  
Sbjct: 50  NRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGA 107

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
            +       G  P +L  E    ++ 
Sbjct: 108 KE------RGQMPESLLNECDEREVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 7e-09
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ--VCLLLK 155
            +  +         +         +N +  +    +G+T L+    LG      + +L++
Sbjct: 108 KERGQMPESLLNECD------EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
             A     D +   PL  A+E  N + + L
Sbjct: 162 LGASPTAKDKADETPLMRAMEFRNREALDL 191

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 22/66 (33%)

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
                L     D +    +++A   G T +V  L++      I +  G   L LA +   
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 180 ADIVTL 185
            D    
Sbjct: 66  VDTAKY 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 1e-11
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
           + RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH   V LLL+  AD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 160 QHIVDSSGVEPLTLAVEKANADIV 183
            +  D +G  PL LA    + ++V
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 2e-08
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 89  GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
           GA  +  +   + RT LH A     +   + L+  G  +N  D  G+TPL+LA   GH  
Sbjct: 25  GADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82

Query: 149 QVCLLLKHKA 158
            V LLL+  A
Sbjct: 83  VVKLLLEAGA 92

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 16/183 (8%), Positives = 36/183 (19%), Gaps = 33/183 (18%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
           +  A+ +            G        +      L+                 L   + 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDV---------------LRNNND 51

Query: 76  VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAV------IGNSVMACEYLILNGLKINC 129
                +    +  GA         +  T            I  +   C+  +  G  I  
Sbjct: 52  EARYKISMFLINKGADIKSRT--KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109

Query: 130 PDAQGKTPLYLATELGHTSQV-------CLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
                K  ++         +         +  +      I D  G+  L           
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169

Query: 183 VTL 185
           + +
Sbjct: 170 LKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 98  NDDHRTYLHQAVIGNSVMACE-------YLILNGLKINCPDAQGKTPLYLATELGHTSQV 150
              ++  + + +    V   E           +GL++   D  G T L           +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 151 CLLLKHKADQHIVDSS 166
            ++  +    ++ ++S
Sbjct: 171 KMMEDYIKKYNLKENS 186

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 44  NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
           +  +RT LH  +I                A+  + L ++   +    ++   +  ++  +
Sbjct: 198 DSMNRTILHHIIITSGMTGCS--------AAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

Query: 104 YLHQAVIGNSVMACE---YLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
             +           E      +    +N  D+ G T L +A  LG+ S V  LL + AD 
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309

Query: 161 HIVDSSGVEPLTLAVE 176
            I + SG+ P+     
Sbjct: 310 FIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 91  SKDWTNPNDDHRTYLHQAVIGNSVM-ACEYLILNGLKINCP-DAQGKTPLYLATELGHTS 148
           S +  +               + +    +      L +N P D  G TPL+  T + +  
Sbjct: 86  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145

Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
            V  L+KH +++   D+ G   L  AV+  N 
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV----CLL 153
           ++   T LH      ++   ++L+ +G      D  G++ L  A +  +         LL
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 154 LKHKADQHIVDSSGVEPLTLAVEKAN 179
                   + DS     L   +  + 
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSG 213

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 50  YLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQA 108
           ++ +             E      +      ++ +        +  N  D +  T L+ A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290

Query: 109 VIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
               ++   + L+  G      +  G  P+     L
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.6 bits (138), Expect = 4e-11
 Identities = 29/88 (32%), Positives = 39/88 (44%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + D  T LH A         + L+  G  +N     G TPL+LA + GH   V LLL   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           AD +     G  P  LA +  + +IV L
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKL 93

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.5 bits (135), Expect = 9e-11
 Identities = 20/74 (27%), Positives = 27/74 (36%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           + D  T LH A         + L+  G  +N     G TP +LA + GH   V LL    
Sbjct: 39  SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

Query: 158 ADQHIVDSSGVEPL 171
           AD +          
Sbjct: 99  ADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 7/42 (16%), Positives = 11/42 (26%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLY 139
           + D  T  H A         + L   G  +N          +
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 25/178 (14%)

Query: 25  LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH 84
           LP +  +       ++ +  +  +T L +A++ +++  + +  LLL  A    +L    +
Sbjct: 33  LPFLQRSKKRLTDSEFKD-PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN 91

Query: 85  ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD------------- 131
           A        +T+     +T LH A+   ++     L+ NG  +                 
Sbjct: 92  A-------SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPG 144

Query: 132 -AQGKTPLYLATELGHTSQVCLLLKH---KADQHIVDSSGVEPLTLAVEKANADIVTL 185
              G+ PL LA      + V  LL++    AD    DS G   L   VE A+  +   
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 33  ALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASK 92
           ++ A +    P    R  +  AV   ++  +L   LL +   +                 
Sbjct: 1   SVSAGEK--PPRLYDRRSIFDAV-AQSNCQELE-SLLPFLQRSKKR----------LTDS 46

Query: 93  DWTNPNDDHRTYLHQAVI---GNSVMACEYLILNGLKI-----------NCPDAQGKTPL 138
           ++ +  +  +T L +A++            L+    K                 +G+T L
Sbjct: 47  EFKD-PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

Query: 139 YLATELGHTSQVCLLLKHKADQHIVDSSGVE--------------PLTLAVEKANADIVT 184
           ++A E  + + V LL+++ AD     +                  PL+LA       IV 
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 185 L 185
            
Sbjct: 166 F 166

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 19/103 (18%)

Query: 102 RTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGH---------TSQ 149
              L  A   N +   ++L+ N  +   I+  D+ G T L+   E+           TS 
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 150 VCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVTL 185
              +L   A  H       I +  G+ PL LA       ++  
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 7/84 (8%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
           N    T    ++    ++    L          + +G TPL LA   G    +  +L+ +
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256

Query: 158 ADQHIVDSSGVEPLTLAVEKANAD 181
                      E    A    +  
Sbjct: 257 IH-------EPECRHAAAHHHHHH 273

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L   + + +   +      GA  D  +      T LH A         E L+  G  I  
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGG-LTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            D +G T L LA E+  T+     ++       +    V  +        A++  +
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVFEYAEVDEI 192

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 9/102 (8%)

Query: 84  HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
               +G+         +               +          +    ++ +TP + A  
Sbjct: 3   VNKIIGSRT-----AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAAR 54

Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                 +  LL    D   VD +G   L       +   V L
Sbjct: 55  KADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRL 95

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 15/102 (14%), Positives = 23/102 (22%), Gaps = 24/102 (23%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG----------------------LKINCPDAQGK 135
           ++   T L  A            +  G                       +I     +GK
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
              YL           +   H A+    D      L  AV +
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED--GLEYAVAE 240

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC----LLLKHK 157
              L  A    S      LI +G  I   D+ G T L++     + +  C    LLL + 
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181

Query: 158 AD------QHIVDSSGVEPLTLAVEKANADIVTL 185
                   + + ++ G+ P  LA  + N  +   
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKIN-------------CPDAQGKTPLYLATEL 144
             + +T LH AVI  +V     L+  G  ++                  G+ PL  A  +
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
           G    V LL++H AD    DS G   L + + + N     
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 103 TYLHQAVIGNSV-MACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD-- 159
           + L  A   N V    + L   G +++   A G+T L++A    +     +L++   +  
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 160 ---QHIVDSSGVEPLTLAVEKANADIVTL 185
                     G   L +AV   N ++V  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRA 93

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKI-----NCPDAQGKTPLYLATELGHTSQVCL 152
                T LH A + +++ A   L+    ++          +G+T L++A    + + V  
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 153 LLKHKAD-------------QHIVDSSGVEPLTLAVEKANADIVTL 185
           LL   A               H +   G  PL+ A    + +IV L
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 134 GKTPLYLATELGHTSQVC-LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            ++PL LA +      +  LL     + H   + G   L +A    N +   +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMV 55

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 23/154 (14%)

Query: 44  NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
               +T L +AV+ + D  +     LL       N   + +A          +       
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSA------ 93

Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDA-------------QGKTPLYLATELGHTSQV 150
            LH A+   S+   + L+ NG  ++                  G+ PL LA        V
Sbjct: 94  -LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 151 CLLLKH---KADQHIVDSSGVEPLTLAVEKANAD 181
             LL++    A     DS G   L   V  A+  
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 84  HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
           HAL + A       N    + L   +    +     L          + QG TPL LA +
Sbjct: 177 HALVMIAD------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

Query: 144 LGHTSQVCLLLKHKAD 159
            G       +L+ +  
Sbjct: 231 EGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 19/113 (16%)

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYL-------- 140
           K            L  A          YL+ N  +   +   D+ G T L+         
Sbjct: 127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186

Query: 141 --------ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                       G       L      + I +  G+ PL LA ++   +I   
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 32/165 (19%), Positives = 47/165 (28%), Gaps = 40/165 (24%)

Query: 48  RTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQ 107
           R  L   V       +L   LL Y       L                      +T L +
Sbjct: 3   RDRLFSVVSR-GVPEEL-TGLLEYLRWNSKYLTD-----------SAYTEGSTGKTCLMK 49

Query: 108 AVI---GNSVMACEYLI-----------LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
           AV+            L+           L   +      QG + L++A E      V LL
Sbjct: 50  AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109

Query: 154 LKHKADQHIVDSSGVE-------------PLTLAVEKANADIVTL 185
           +++ AD H+                    PL+LA      D+VT 
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 25/159 (15%)

Query: 38  KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNP 97
           +++  P+   +T L +A++ ++   + +  +LL  A    N+    ++        + + 
Sbjct: 38  EEFREPSTG-KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS-------PFRDV 89

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD--------------AQGKTPLYLATE 143
               +T LH A+        E L+  G  ++                   G+ PL LA  
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 144 LGHTSQVCLLLKH---KADQHIVDSSGVEPLTLAVEKAN 179
                 V  L ++   +AD    DS G   L   V  A+
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 92  KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGH-- 146
           KD           L  A   N      YL  NG K   +   D++G T L+    +    
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 147 -------TSQVCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVTL 185
                  T    LLL   A          ++++ G+ PL +A +     I   
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 29/122 (23%)

Query: 92  KDWTNPNDDHRTYLHQAVIGNS---VMACEYLILNGLK-----------INCPDAQGKTP 137
           +++  P+   +T L +A++  S         L+    K                 +G+T 
Sbjct: 38  EEFREPSTG-KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA 96

Query: 138 LYLATELGHTSQVCLLLKHKADQHIVDSSGVE--------------PLTLAVEKANADIV 183
           L++A E      V LL++  AD H                      PL+LA       IV
Sbjct: 97  LHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156

Query: 184 TL 185
             
Sbjct: 157 HY 158

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD--SSGVEPLTLAV 175
             L+ +   +    A+      LA E GH   +  L +    + +    +       LA 
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 171

Query: 176 EKANADIV 183
           E  +  ++
Sbjct: 172 ENGHLHVL 179

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 3/95 (3%)

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK---TPLYLAT 142
             L  ++       ++      A     +     L            Q +      + A 
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 143 ELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
             GH + +  LL         +    E     V  
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.7e-38  Score=208.67  Aligned_cols=149  Identities=30%  Similarity=0.350  Sum_probs=143.5

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD   93 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   93 (185)
                      ++|+.||+.|+.+++++|++.|++++.++.                     .|.|||++|+..++.++++++++.|.+++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~---------------------~g~t~l~~a~~~~~~~~~~~ll~~gad~~   64 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDS---------------------DGRTPLHHAAENGHKEVVKLLISKGADVN   64 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHhcccchh
Confidence            579999999999999999999999998887                     99999999999999999999999999998


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300          94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL  173 (185)
Q Consensus        94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  173 (185)
                      .+  +..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..++.+++++|++.|++++.++..|.|||++
T Consensus        65 ~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           65 AK--DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             CC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hh--ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            76  8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccC
Q psy6300         174 AVEKANADIVTL  185 (185)
Q Consensus       174 A~~~~~~~~~~~  185 (185)
                      |+..|+.+++++
T Consensus       143 A~~~g~~~iv~~  154 (169)
T 4gpm_A          143 AREHGNEEVVKL  154 (169)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999998863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=221.72  Aligned_cols=155  Identities=21%  Similarity=0.132  Sum_probs=149.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|+++|+..++.++
T Consensus        76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~---------------------~g~t~l~~a~~~~~~~~  134 (269)
T 4b93_B           76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA---------------------DQAVPLHLACQQGHFQV  134 (269)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC---------------------CCCCccccccccChHHH
Confidence            789999999999999999999999999999999999988776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +++|++.|.+++..  |..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++|++|+++|+|++
T Consensus       135 ~~~Ll~~g~~~n~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          135 VKCLLDSNAKPNKK--DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999876  8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHhCC
Q psy6300         162 IVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       162 ~~~~~~~t~l~~A~~~~~  179 (185)
                      .+|..|+|||++|+.+++
T Consensus       213 ~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCCTTSCCSGGGSCTTCH
T ss_pred             CcCCCCCCHHHHHHhCCc
Confidence            999999999999987765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.2e-36  Score=203.65  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=150.0

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH   84 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   84 (185)
                      .+.+|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.+++++
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~   86 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI---------------------EGSTALIWAVKNNRLGIAEK   86 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc---------------------cCccHHHHHHHcCCHHHHHH
Confidence            467899999999999999999999999999999887766                     89999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Q psy6300          85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD  164 (185)
Q Consensus        85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  164 (185)
                      |++.+.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++
T Consensus        87 Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           87 LLSKGSNVNTK--DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             HHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHHCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            99999998875  7889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCccccc
Q psy6300         165 SSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       165 ~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ..|.||+++|+..|+.++++
T Consensus       165 ~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          165 LTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             TTSCBHHHHHHHTTCHHHHH
T ss_pred             CCCCCHHHHHHHhCcHHHHH
Confidence            99999999999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.7e-36  Score=210.23  Aligned_cols=181  Identities=22%  Similarity=0.170  Sum_probs=155.6

Q ss_pred             CCCCC-CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDD-VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~-~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++ ..|..|.||||+|+..|+.+++++|++.|++++..+....++             +++...+.......+..|.
T Consensus        46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  125 (253)
T 1yyh_A           46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT  125 (253)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred             cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence            34443 358899999999999999999999999999998887665554             1122222212234455899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      +|||+|+..|+.+++++|++.|.+++..  +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  203 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADVNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY  203 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999999876  78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++++|+++|++++.++..|.||+++|+..|+.++++
T Consensus       204 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~  240 (253)
T 1yyh_A          204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR  240 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-35  Score=202.55  Aligned_cols=181  Identities=22%  Similarity=0.167  Sum_probs=157.8

Q ss_pred             CCCCCCC-CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDDVS-DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++.. |..|.||||+|+..|+.+++++|++.|++++..+....++             +++...........+..+.
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~   93 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT   93 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCC
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            5666654 8899999999999999999999999999998877655544             1122222212234455889


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      +|||+|+..++.+++++|++.+.+++..  +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.
T Consensus        94 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  171 (223)
T 2f8y_A           94 TPLILAARLAVEGMLEDLINSHADVNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY  171 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHhCcHHHHHHHHHcCCCCcCc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH
Confidence            9999999999999999999999998876  78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++++|+++|++++.++..|.||+++|+..++.++++
T Consensus       172 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHH
Confidence            9999999999999999999999999999999998876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.7e-35  Score=194.21  Aligned_cols=151  Identities=21%  Similarity=0.195  Sum_probs=144.5

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      .|.||||.|+..|+.+++++|++.|.+++..+.                     .|.+|||+|+..|+.+++++|++.+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~   60 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE---------------------EGFTPLMWAAAHGQIAVVEFLLQNGA   60 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC---------------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            578999999999999999999999998888776                     89999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  170 (185)
                      +++..  +..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus        61 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           61 DPQLL--GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             CTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99876  7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCccccc
Q psy6300         171 LTLAVEKANADIVT  184 (185)
Q Consensus       171 l~~A~~~~~~~~~~  184 (185)
                      +++|+..|+.++++
T Consensus       139 l~~A~~~~~~~~~~  152 (167)
T 3v31_A          139 MDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHcCcHHHHH
Confidence            99999999998875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.7e-35  Score=198.30  Aligned_cols=159  Identities=21%  Similarity=0.175  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      .+++..|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.+++
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~l~~A~~~~~~~~~   88 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS---------------------ISDSPYLYAGAQGRTEIL   88 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHH
Confidence            47888999999999999999999999999999999988776                     899999999999999999


Q ss_pred             HHHH-HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCC-----HHHHHHHHh
Q psy6300          83 CHAL-ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGH-----TSQVCLLLK  155 (185)
Q Consensus        83 ~~ll-~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~-----~~~v~~Ll~  155 (185)
                      ++|+ ..+.+++..  +..|.||||.|+..|+.+++++|++.| ++++..+..|.||||+|+..+.     .+++++|++
T Consensus        89 ~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           89 AYMLKHATPDLNKH--NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHHHSCCCTTCC--CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HHHHhccCcccccc--cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence            9999 556577664  788999999999999999999999999 9999999999999999999988     899999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         156 HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       156 ~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|++++.++..|.|||++|+..|+.++++
T Consensus       167 ~ga~~~~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          167 NGADQSIKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence            99999999999999999999999999876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=4e-35  Score=193.84  Aligned_cols=155  Identities=25%  Similarity=0.241  Sum_probs=144.8

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      .....+.++|++|++.|+.+++++|++.|++++.++.                     .|.+|||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll   67 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA---------------------SGWTPLHLAAFNGHLEIVEVLL   67 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence            3455678999999999999999999999999988776                     8999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS  166 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  166 (185)
                      +.+.+++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..
T Consensus        68 ~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  145 (169)
T 2y1l_E           68 KNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF  145 (169)
T ss_dssp             HTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            999998875  788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCccccc
Q psy6300         167 GVEPLTLAVEKANADIVT  184 (185)
Q Consensus       167 ~~t~l~~A~~~~~~~~~~  184 (185)
                      |.||+++|+..|+.++++
T Consensus       146 g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHH
Confidence            999999999999998876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.9e-35  Score=192.72  Aligned_cols=138  Identities=26%  Similarity=0.231  Sum_probs=128.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.|||++|+..++.+++++|++.|++++.++.                     .|.||||+|+..|+.++
T Consensus        27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~---------------------~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A           27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS---------------------DGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc---------------------CCCCHHHHHHHcCCHHH
Confidence            799999999999999999999999999999999999988877                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +++|+++|++++.+  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++
T Consensus        86 v~~Ll~~gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           86 VKLLISKGADVNAK--DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHCcCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            99999999999986  8899999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy6300         162 I  162 (185)
Q Consensus       162 ~  162 (185)
                      -
T Consensus       164 ~  164 (169)
T 4gpm_A          164 H  164 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.5e-35  Score=204.77  Aligned_cols=182  Identities=20%  Similarity=0.127  Sum_probs=152.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhcc---CCcccCCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIG---VNDVSDLS   65 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~   65 (185)
                      +++++..|..|.||||+|+..|+.+++++|++.|++++..+....++             +.+......   .....+..
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            56888999999999999999999999999999999988776654444             112222210   11333447


Q ss_pred             chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          66 PELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        66 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      |.+|||+|+..|+.+++++|++.+.+++..  + ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADIDAV--DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccc--cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            889999999999999999999999888875  4 6789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      ++.+++++|+++|++++.++..|.||+++|+..|+.++++.
T Consensus       194 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             CCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            99999999999999999999999999999999998888763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.2e-35  Score=202.27  Aligned_cols=167  Identities=19%  Similarity=0.092  Sum_probs=141.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.||||+|+..|+.+++++|++.|+++.....                ...+..|.+|||+|+..|+.++
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------~~~~~~g~t~L~~A~~~~~~~~   90 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM----------------TSELYEGQTALHIAVINQNVNL   90 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC----------------CSTTTTTCCHHHHHHHTTCHHH
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc----------------cccCCCCcCHHHHHHHcCCHHH
Confidence            567777777788888888888888888888877766522111                1122288999999999999999


Q ss_pred             HHHHHHcCCCCCCCCC-----------CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q psy6300          82 MCHALALGASKDWTNP-----------NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV  150 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~-----------~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v  150 (185)
                      +++|+++|.+++....           +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++
T Consensus        91 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~  170 (232)
T 2rfa_A           91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA  170 (232)
T ss_dssp             HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred             HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence            9999999999887521           22699999999999999999999999999999999999999999999999988


Q ss_pred             ----HHHHhCCCCC------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300         151 ----CLLLKHKADQ------HIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       151 ----~~Ll~~g~~~------~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                          ++|++.|++.      +.++..|.|||++|+..|+.++++
T Consensus       171 ~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             HHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence                9999999987      588999999999999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-35  Score=189.42  Aligned_cols=150  Identities=25%  Similarity=0.199  Sum_probs=140.8

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      ..++|+.|+..|+.+++++|++.|.+++ .+.                     .|.+|||+|+..|+.+++++|++.+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~   59 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDW---------------------LGTSPLHLAAQYGHFSTTEVLLRAGVS   59 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT---------------------TCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4689999999999999999999998765 233                     788999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300          92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL  171 (185)
Q Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  171 (185)
                      ++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||+
T Consensus        60 ~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  137 (153)
T 1awc_B           60 RDAR--TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             TTCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCC--CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            8875  78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcccccC
Q psy6300         172 TLAVEKANADIVTL  185 (185)
Q Consensus       172 ~~A~~~~~~~~~~~  185 (185)
                      ++|+..|+.+++++
T Consensus       138 ~~A~~~~~~~i~~~  151 (153)
T 1awc_B          138 DISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999998763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.5e-35  Score=201.95  Aligned_cols=177  Identities=19%  Similarity=0.152  Sum_probs=142.4

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHH
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLY   71 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~   71 (185)
                      .+..+..|.||||+|+..|+.+++++|++.|++++.++....++             +++...+.+.+ ..+..|.+|||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~  111 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLH  111 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence            45678889999999999999999999999988887776654443             12222222222 23347888999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Q psy6300          72 RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC  151 (185)
Q Consensus        72 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~  151 (185)
                      +|+..++.+++++|++.+.+++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.++++
T Consensus       112 ~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          112 YAASKNRHEIAVMLLEGGANPDAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence            999989999999999888888765  778889999999999999999999999998888888999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       152 ~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +|+++|++++.++..|.||+++|+..++.++++
T Consensus       190 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  222 (231)
T 3aji_A          190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILKR  222 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence            999999999888889999999988877776654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.2e-35  Score=207.88  Aligned_cols=170  Identities=19%  Similarity=0.080  Sum_probs=105.2

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccC--------------------------
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGV--------------------------   58 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~--------------------------   58 (185)
                      ++.++..|.||||+|+..|+.+++++|+++|++++..+....++  ++......                          
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp--L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA--LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH--HHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH--HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence            56677777888888888888888888888777777665543333  22111100                          


Q ss_pred             -----------------------------------CcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCC
Q psy6300          59 -----------------------------------NDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHR  102 (185)
Q Consensus        59 -----------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~  102 (185)
                                                         ....+..|.+|||+|+..|+.+++++|+++|.+++..  + ..|.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~  193 (282)
T 1oy3_D          116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGR  193 (282)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC--CTTTCC
T ss_pred             ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCc
Confidence                                               0122336667777777777777777777777777654  3 2377


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300         103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       103 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                      ||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|....
T Consensus       194 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777776554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.5e-34  Score=198.07  Aligned_cols=178  Identities=22%  Similarity=0.180  Sum_probs=99.6

Q ss_pred             CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHH
Q psy6300           4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLL   70 (185)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l   70 (185)
                      +.+.+|..|.||||.|+..|+.+++++|++.|++++..+....++             +++...+... ...+..|.+||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   81 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCL   81 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHH
Confidence            455666666666666666666666666666666665554433332             1111111111 12223555666


Q ss_pred             HHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300          71 YRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ  149 (185)
Q Consensus        71 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  149 (185)
                      |+|+..|+.+++++|++.+ .+++..  +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQ--DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            6666666666666666555 344432  4555566666666666666666666666666555566666666666666666


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       150 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++|++.|++++.++..|.||||+|+..++.++++
T Consensus       160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (237)
T 3b7b_A          160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV  194 (237)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHH
Confidence            66666666666666666666666666666555543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-34  Score=199.82  Aligned_cols=179  Identities=18%  Similarity=0.174  Sum_probs=156.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   68 (185)
                      |++++..+..|.||||.|+..|+.+++++|++.|++++..+....++             +++...+.......+..|.+
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  113 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT  113 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence            68899999999999999999999999999999999988876655444             11122211112334458999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS  148 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  148 (185)
                      |||+|+..++.+++++|++.|.+++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+
T Consensus       114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  191 (237)
T 3b7b_A          114 PMIWATEYKHVDLVKLLLSKGSDINIR--DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD  191 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh
Confidence            999999999999999999999999875  788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccc
Q psy6300         149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI  182 (185)
Q Consensus       149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  182 (185)
                      ++++|+++|++++.++..|.||+++|+..++.+.
T Consensus       192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2e-35  Score=204.97  Aligned_cols=162  Identities=22%  Similarity=0.199  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +++++..+..|.||||+|+..|+.+++++|++.|++++.++.                     .|.+|||+|+..|+.++
T Consensus        35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   93 (236)
T 1ikn_D           35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF---------------------RGNTPLHLACEQGCLAS   93 (236)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence            357889999999999999999999999999999999888776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCC----CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          82 MCHALALGASKDW----TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        82 ~~~ll~~~~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      +++|++.+.++..    ...+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..++.+++++|+++
T Consensus        94 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  173 (236)
T 1ikn_D           94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC  173 (236)
T ss_dssp             HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999875321    22367899999999999999999999999999999997 999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         157 KADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       157 g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |++++.++..|.|||++|+..|+.++++
T Consensus       174 ga~~~~~~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          174 GADVNRVTYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             TCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             CCCCCcccCCCCCHHHHHHccCchHHHH
Confidence            9999999999999999999999998875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.4e-34  Score=197.40  Aligned_cols=174  Identities=22%  Similarity=0.203  Sum_probs=146.4

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCC-CCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGAS-KDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYRA   73 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~a   73 (185)
                      .+..+.+||+.|+..|+.+.++++++.+.. .+..+....++             +++...+.+.+. .+..|.+|||+|
T Consensus         2 e~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A   80 (231)
T 3aji_A            2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA   80 (231)
T ss_dssp             -CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHH
T ss_pred             CCccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHH
Confidence            355688999999999999999999987754 33344433333             222333333333 344889999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          74 STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      +..|+.+++++|++++.+++..  +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988875  78899999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         154 LKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++.|++++.++..|.|||++|+..++.++++
T Consensus       159 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          159 LFYKASTNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999988875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=205.49  Aligned_cols=157  Identities=23%  Similarity=0.280  Sum_probs=147.8

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH-----hcCC
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS-----TVHN   78 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-----~~~~   78 (185)
                      ++..|..|.||||+|+..|+.+++++|++.|+ +++..+.                     .|.+|||+|+     ..++
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~---------------------~g~tpL~~a~~~~~~~~~~  162 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR---------------------AGYSPIMLTALATLKTQDD  162 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT---------------------TSCCHHHHGGGCCCCSHHH
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC---------------------CCCCHHHHHHHHHhhhhhh
Confidence            68899999999999999999999999999998 8887776                     8999999999     6688


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-CC
Q psy6300          79 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HK  157 (185)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g  157 (185)
                      .++++.+++.|.+.+..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++ .|
T Consensus       163 ~~~v~~Ll~~g~~~~~~--~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          163 IETVLQLFRLGNINAKA--SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             HHHHHHHHHHSCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             HHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            89999999999777764  7789999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         158 ADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       158 ~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++++.++..|.|||++|+..|+.++++
T Consensus       241 ad~~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          241 CDISLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCcCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-34  Score=210.83  Aligned_cols=182  Identities=22%  Similarity=0.218  Sum_probs=158.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc-----------------CCcccCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG-----------------VNDVSDL   64 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~   64 (185)
                      |++++..|..|.||||+|+..|+.+++++|++.|++++..+....++  ++.....                 .....+.
T Consensus       156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~--L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA--LHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH--HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH--HHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            78999999999999999999999999999999999998877655444  2222211                 1123345


Q ss_pred             CchhHHHHHHhcC---CHHHHHHHHHcCCCCCCC------CCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCC
Q psy6300          65 SPELLLYRASTVH---NLPVMCHALALGASKDWT------NPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQG  134 (185)
Q Consensus        65 ~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~  134 (185)
                      .|.+|||+|+..+   +.+++++|++.|.+++..      ..+..|.||||.|+..|+.+++++|++.+ ++++..|..|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            8999999999988   899999999999998752      13568999999999999999999999876 9999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      .||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~  364 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI  364 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999998863

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.2e-34  Score=188.84  Aligned_cols=150  Identities=21%  Similarity=0.168  Sum_probs=141.8

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      ...+||+.|+..|+.+++++|++.|++++..+.                     .|.+|||+|+. |+.+++++|++.+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~-~~~~~v~~Ll~~g~   61 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG---------------------FGRTALQVMKL-GNPEIARRLLLRGA   61 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---------------------TSCCHHHHCCS-SCHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc---------------------cCccHHHHHHc-CcHHHHHHHHHcCC
Confidence            467999999999999999999999999888776                     89999999999 99999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCc
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD-QHIVDSSGVE  169 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t  169 (185)
                      +++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++ ++.++..|.|
T Consensus        62 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           62 NPDLK--DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             CTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            99875  78999999999999999999999999999999999999999999999999999999999988 5899999999


Q ss_pred             HHHHHHHhCCccccc
Q psy6300         170 PLTLAVEKANADIVT  184 (185)
Q Consensus       170 ~l~~A~~~~~~~~~~  184 (185)
                      ||++|+..|+.++++
T Consensus       140 ~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A          140 ACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            999999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-34  Score=210.81  Aligned_cols=177  Identities=16%  Similarity=0.106  Sum_probs=152.5

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCC-------------------c--
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN-------------------D--   60 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~--   60 (185)
                      |++++..|..|.||||+|+..|+.+++++|++.|++++..    ...+.++.......                   .  
T Consensus        43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  118 (364)
T 3ljn_A           43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLL  118 (364)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHH
Confidence            6788888989999999999999999999999988865542    12233333222111                   0  


Q ss_pred             --------------ccCCCchhHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q psy6300          61 --------------VSDLSPELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG  124 (185)
Q Consensus        61 --------------~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  124 (185)
                                    ..+..|.+|||+|+..|  +.+++++|++.|.+++..  +..|.||||+|+..|+.+++++|++.|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g  196 (364)
T 3ljn_A          119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK--DKADETPLMRAMEFRNREALDLMMDTV  196 (364)
T ss_dssp             TCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             hhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                          14447899999999999  999999999999999876  889999999999999999999999999


Q ss_pred             CC-----CCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         125 LK-----INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       125 ~~-----~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++     ++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus       197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~  261 (364)
T 3ljn_A          197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK  261 (364)
T ss_dssp             SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHH
T ss_pred             cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Confidence            98     9999999999999999999999999999999999999999999999999999999876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.5e-35  Score=206.00  Aligned_cols=171  Identities=16%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             CCCCCC----CCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH
Q psy6300           2 VATDDV----SDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS   74 (185)
Q Consensus         2 ~~~~~~----~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~   74 (185)
                      |++++.    .|..|.||||+|+..   |+.+++++|++.|++++..+..          ........+..|.+|||+|+
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~----------~~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL----------VNAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG----------GGCCCCSTTTTTCCHHHHHH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh----------cccccccccccCCCHHHHHH
Confidence            567777    899999999999999   9999999999999877643310          00001111237999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCC-------------CChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHH
Q psy6300          75 TVHNLPVMCHALALGASKDWTNPNDD-------------HRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPL  138 (185)
Q Consensus        75 ~~~~~~~~~~ll~~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l  138 (185)
                      ..|+.+++++|+++|.+++..  +..             |.||||+|+..|+.+++++|++   .|++++..|..|.|||
T Consensus        99 ~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL  176 (256)
T 2etb_A           99 EKRSLQCVKLLVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL  176 (256)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH
Confidence            999999999999999999876  444             9999999999999999999999   9999999999999999


Q ss_pred             HHHHH--hCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300         139 YLATE--LGHTS-------QVCLLLKHKADQ-------HIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       139 ~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+|+.  .++.+       ++++|++.|+++       +.++..|.|||++|+..|+.++++
T Consensus       177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            99999  77888       999999999999       899999999999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.8e-34  Score=189.51  Aligned_cols=150  Identities=23%  Similarity=0.211  Sum_probs=140.1

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCC-CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGAS-KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      +.+|||.|+..|+.+++++|++.+.. ++..+.                     .|.+|||+|+..|+.+++++|+++|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~   60 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE---------------------RGFTPLIWASAFGEIETVRFLLEWGA   60 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46899999999999999999999876 555555                     89999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  170 (185)
                      +++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus        61 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  138 (172)
T 3v30_A           61 DPHIL--AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP  138 (172)
T ss_dssp             CTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             Cchhh--cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99876  7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCccccc
Q psy6300         171 LTLAVEKANADIVT  184 (185)
Q Consensus       171 l~~A~~~~~~~~~~  184 (185)
                      |++|+..|+.++++
T Consensus       139 l~~A~~~~~~~~~~  152 (172)
T 3v30_A          139 MDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHH
Confidence            99999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2e-34  Score=201.94  Aligned_cols=179  Identities=21%  Similarity=0.120  Sum_probs=118.0

Q ss_pred             CCCCCCCCCCchHHHHHHhcC-------------ChHHHHHHHHcCCCCCCC-CCCCCCc-------------hhhHHhh
Q psy6300           3 ATDDVSDLSPELLLYRASTVH-------------NLPVMCHALALGASKDWT-NPNDDHR-------------TYLHQAV   55 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g-------------~~~~~~~ll~~g~~~~~~-~~~~~~~-------------~~~~~~~   55 (185)
                      .+++.+|..|.||||+|+..|             +.+++++|++.|.+++.. +....++             +.+...+
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            368899999999999999987             899999999999987653 3333333             2223333


Q ss_pred             ccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q psy6300          56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG  134 (185)
Q Consensus        56 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  134 (185)
                      .+.+. .+..|.+|||+|+..|+.+++++|++.+. +++..  +..|.||||+|+..++.+++++|++.|++++..|..|
T Consensus        81 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           81 ADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR--MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             CCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC--CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc--CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence            33333 34488999999999999999999999886 66654  7889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.++++
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999998875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=201.57  Aligned_cols=174  Identities=21%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHH
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYR   72 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~   72 (185)
                      +..|..|.||||+|+..|+.+++++|++.|++++.++....++             +++...+.+.+ ..+..|.+|||+
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~  131 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFN  131 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHH
Confidence            3445555555555555555555555555555555444433322             11111111111 122255555555


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy6300          73 ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL  152 (185)
Q Consensus        73 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~  152 (185)
                      |+..|+.+++++|++.+.+++.   +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSC---SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            5555555555555555555543   2335555555555555555555555555555555555555555555555555555


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       153 Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |++.|++++. +..|.|||++|+..++.++++
T Consensus       209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          209 LLESGADVNQ-GKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5555555553 455555555555555555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-33  Score=193.63  Aligned_cols=156  Identities=21%  Similarity=0.197  Sum_probs=92.4

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCC-CCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTN-PNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      ..|..|.||||+|+..|+.+++++|++.|++++... .+.                   .|.+|||+|+..|+.+++++|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-------------------~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-------------------SGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-------------------TSCCHHHHHHHHCCHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-------------------CCCCHHHHHHHcCCHHHHHHH
Confidence            477888888888888888888888888885544332 111                   455555555555555555555


Q ss_pred             HHcC--CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCC
Q psy6300          86 LALG--ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHI  162 (185)
Q Consensus        86 l~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~  162 (185)
                      ++.+  .+++.  .+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.| ++++.
T Consensus        92 l~~g~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A           92 YDRPLKPDLNK--ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             HSSSSCCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC
T ss_pred             HhCCCCccccc--CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC
Confidence            5555  33332  2445555555555555555555555555555555555555555555555555555555555 55555


Q ss_pred             CCCCCCcHHHHHHHhCCcccc
Q psy6300         163 VDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       163 ~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      ++..|.||||+|+..|+.+++
T Consensus       170 ~d~~g~t~L~~A~~~~~~~~v  190 (228)
T 2dzn_A          170 QDKQGWTPLFHALAEGHGDAA  190 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHH
Confidence            555555555555555555544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=201.53  Aligned_cols=175  Identities=25%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCC--------CCCCCCC--------------chhhHHhhccCCcccCC
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDW--------TNPNDDH--------------RTYLHQAVIGVNDVSDL   64 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~~~~   64 (185)
                      -+|..+.++|+.|+..|+++++++|++.|.+...        .+....+              ...+...+.+.+. .+.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTC-CCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCC
Confidence            4677789999999999999999999998875321        1111111              1122223333333 344


Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .|.||||+|+..|+.+++++|++.+++++..  +..|.||++.|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc--CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            8999999999999999999999999999876  78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.8e-34  Score=188.95  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=138.8

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcC-CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      +.+..|.+||+.|+..|+.+++++|++.+ .+++..+.                     .|.+|||+|+..|+.+++++|
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~L   61 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG---------------------RQSTPLHFAAGYNRVSVVEYL   61 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT---------------------TCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc---------------------CCCCHHHHHHHcChHHHHHHH
Confidence            45778999999999999999999998744 34444443                     788999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Q psy6300          86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS  165 (185)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  165 (185)
                      ++++.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++.
T Consensus        62 l~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           62 LQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhcCCCCCcc--CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            9999999876  78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCccccc
Q psy6300         166 SGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       166 ~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|.||+++|.. ++.++++
T Consensus       140 ~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A          140 DGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             TSCCTGGGSCT-TCHHHHH
T ss_pred             CCCChhHhHhc-CChHHHH
Confidence            99999999876 7777765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-33  Score=196.06  Aligned_cols=181  Identities=23%  Similarity=0.187  Sum_probs=136.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCccc------
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVS------   62 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~------   62 (185)
                      |++++..+..|.||||+|+..|+.+++++|++.|++++..+....++             +++...+.+.+...      
T Consensus        62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  141 (285)
T 1wdy_A           62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence            56667777777777777777777777777777777766655443333             11122222221110      


Q ss_pred             ---CCCchhHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCC
Q psy6300          63 ---DLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGNS----VMACEYLILNGLKINCPDAQG  134 (185)
Q Consensus        63 ---~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~  134 (185)
                         +..|.+|||+|+..|+.+++++|++. +.+++..  +..|.||||.|+..++    .+++++|++.|++++..+..|
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g  219 (285)
T 1wdy_A          142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG  219 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC--CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTS
T ss_pred             HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc--CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCC
Confidence               34677888888888888888888876 7777765  7788888888888888    888888888888888888889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         135 KTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       135 ~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .||||+|+..++.+++++|++ .|++++.++..|.|||++|+..|+.++++
T Consensus       220 ~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence            999999999999999999988 78888888889999999999988888775

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.6e-33  Score=201.35  Aligned_cols=182  Identities=24%  Similarity=0.193  Sum_probs=147.5

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   68 (185)
                      +.+++.+|..|.||||+|+..|+.+++++|++.|++++..+....++             +++...+.+.+. .+..|.+
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t  126 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFT  126 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCC
Confidence            56778888999999999999999999999999999888877655444             222333333333 3347889


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCC----------------------------------------------------
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTN----------------------------------------------------   96 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~----------------------------------------------------   96 (185)
                      |||+|+..|+.+++++|+++|.+++...                                                    
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (351)
T 3utm_A          127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK  206 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence            9999999999999999999888876431                                                    


Q ss_pred             CCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300          97 PNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL  173 (185)
Q Consensus        97 ~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  173 (185)
                      .+..|.||||.|+..   +..+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            134567888888888   55788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCccccc
Q psy6300         174 AVEKANADIVT  184 (185)
Q Consensus       174 A~~~~~~~~~~  184 (185)
                      |+..|+.++++
T Consensus       287 A~~~~~~~~v~  297 (351)
T 3utm_A          287 AALAGHLQTCR  297 (351)
T ss_dssp             HHHHTCHHHHH
T ss_pred             HHHcCcHHHHH
Confidence            99999988875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.8e-34  Score=200.83  Aligned_cols=179  Identities=27%  Similarity=0.232  Sum_probs=149.8

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCC---CCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGAS---KDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   68 (185)
                      .+..|..|.||||+|+..|+.+++++|++.|++   ++.++....++             +.+...+.+.+ ..+..|.+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence            467899999999999999999999999999988   45555444433             22233333333 33448999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCC---------------------------------------------CCCCCCCCCh
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKD---------------------------------------------WTNPNDDHRT  103 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~---------------------------------------------~~~~~~~~~~  103 (185)
                      |||+|+..|+.+++++|++.+.+..                                             ...++..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999998776521                                             1123678999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccc
Q psy6300         104 YLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI  182 (185)
Q Consensus       104 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  182 (185)
                      |||.|+..|+.+++++|++.|++++..+.. |.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.++
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            999999999999999999999999998854 9999999999999999999999999999999999999999999999988


Q ss_pred             cc
Q psy6300         183 VT  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       241 v~  242 (282)
T 1oy3_D          241 AR  242 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.8e-33  Score=191.89  Aligned_cols=176  Identities=24%  Similarity=0.170  Sum_probs=148.7

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHH----cCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALA----LGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~----~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   68 (185)
                      +.+|..|.||||+|+..|+.+++++|++    .|.+++..+....++             +++...+.+.+. .+..|.+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCC
Confidence            4578999999999999999999999887    788888877655544             223333333333 3448899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE  143 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~  143 (185)
                      |||+|+..++.+++++|++.+.    +++..  +..|.||||.|+..++.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEAR--NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccc--CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            9999999999999999999887    55543  7789999999999999999999999999999888 789999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999998875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=3.6e-33  Score=182.02  Aligned_cols=148  Identities=24%  Similarity=0.290  Sum_probs=138.9

Q ss_pred             CchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      +.+||+.|+..|+.+++++|++. +.+++..+.                     .|.+|||+ +..|+.+++++|++.|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~-~~~~~~~~v~~Ll~~g~   59 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR---------------------FGKTALQV-MMFGSTAIALELLKQGA   59 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT---------------------TSCCHHHH-SCTTCHHHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC---------------------CCCcHHHH-HHcCCHHHHHHHHHCCC
Confidence            57999999999999999999988 336766666                     89999999 99999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  170 (185)
                      +++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++. ++++.++..|.||
T Consensus        60 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~  136 (156)
T 1bd8_A           60 SPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP  136 (156)
T ss_dssp             CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred             CCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence            99876  78999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHhCCccccc
Q psy6300         171 LTLAVEKANADIVT  184 (185)
Q Consensus       171 l~~A~~~~~~~~~~  184 (185)
                      |++|+..|+.++++
T Consensus       137 l~~A~~~~~~~~v~  150 (156)
T 1bd8_A          137 LELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHHHSCCHHHHH
T ss_pred             HHHHHHcCcHHHHH
Confidence            99999999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.3e-33  Score=194.02  Aligned_cols=152  Identities=24%  Similarity=0.251  Sum_probs=139.6

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG   89 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~   89 (185)
                      .|.||||.|+..|+.+++++|++. |++++.++.                     .|.+|||+|+..|+.+++++|++.+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~~   60 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA---------------------MGETALHIAALYDNLEAAMVLMEAA   60 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            589999999999999999999997 999888877                     9999999999999999999999998


Q ss_pred             CCCCC---CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-------------CCCcHHHHHHHhCCHHHHHHH
Q psy6300          90 ASKDW---TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-------------QGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        90 ~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------------~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      .++..   ...+..|.||||+|+..|+.+++++|++.|++++..+.             .|.||||+|+..++.+++++|
T Consensus        61 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  140 (232)
T 2rfa_A           61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL  140 (232)
T ss_dssp             GGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred             chhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            87621   11367899999999999999999999999999988765             799999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         154 LKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      +++|++++.++..|.||||+|+..++.+++
T Consensus       141 l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~  170 (232)
T 2rfa_A          141 IEHGADIRAQDSLGNTVLHILILQPNKTFA  170 (232)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence            999999999999999999999999998765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-33  Score=209.36  Aligned_cols=180  Identities=22%  Similarity=0.188  Sum_probs=155.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCch-------------hhHHhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT-------------YLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   68 (185)
                      |++++..+..|.||||.|+..|+.+++++|++.|++++..+....++-             ++...+.+. ...+..|.+
T Consensus       202 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t  280 (437)
T 1n11_A          202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLT  280 (437)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            567888888999999999999999999999999998887765544431             122222222 233448899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS  148 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  148 (185)
                      |||+|+..|+.+++++|++++.+++..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+
T Consensus       281 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~  358 (437)
T 1n11_A          281 PLHLVAQEGHVPVADVLIKHGVMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD  358 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCC--CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCccCCCC--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH
Confidence            999999999999999999999999875  788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++++|+++|++++.++..|.||+++|...|+.++++
T Consensus       359 iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~  394 (437)
T 1n11_A          359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD  394 (437)
T ss_dssp             HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999999999999999999999887764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=197.68  Aligned_cols=120  Identities=22%  Similarity=0.143  Sum_probs=108.4

Q ss_pred             cCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          62 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        62 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      .+..|.||||+|+..|+.+++++|++.+.+++..  +..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A  164 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV--TADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEA  164 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHH
Confidence            3448899999999999999999999999888875  788999999999999999999999999998854 4589999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       142 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +..++.+++++|++.|++++.++..|.|||++|+..|+.++++
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~  207 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK  207 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999999999999999999999999999999988875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-33  Score=207.62  Aligned_cols=180  Identities=26%  Similarity=0.250  Sum_probs=128.1

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~   68 (185)
                      |++++..+..|.||||.|+..|+.+++++|++.|++++..+....++             +++...+.+.+.. +..|.+
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t   82 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQT   82 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCC
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCC
Confidence            67788888888888888888888888888888888887776554443             2233333333333 337788


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300          69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS  148 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  148 (185)
                      |||+|+..|+.+++++|+++|.+++..  +..|.||||.|+..|+.+++++|++.+++.+..+..|.||||+|+..++.+
T Consensus        83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  160 (437)
T 1n11_A           83 PLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  160 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            888888888888888888888877765  677788888888888888888888887777777777888888888888888


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++++|++.|++++..+..|.|||++|+..++.++++
T Consensus       161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  196 (437)
T 1n11_A          161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  196 (437)
T ss_dssp             HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            888888888887777777888888888877777664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.1e-33  Score=187.18  Aligned_cols=153  Identities=17%  Similarity=0.039  Sum_probs=138.6

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      ++.+.++|+.|+..|+.+++++|++. +.+++..+.                     .|.+|||+|+..|+.+++++|++
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~   60 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD---------------------HGFSPLHWACREGRSAVVEMLIM   60 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC---------------------CCCCHHHHHHHcCcHHHHHHHHH
Confidence            34578899999999999999999988 456666665                     89999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG  167 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  167 (185)
                      .+.+++..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        61 ~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  138 (179)
T 3f6q_A           61 RGARINVM--NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG  138 (179)
T ss_dssp             TTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred             cCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence            99999876  7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCccccc
Q psy6300         168 VEPLTLAVEKANADIVT  184 (185)
Q Consensus       168 ~t~l~~A~~~~~~~~~~  184 (185)
                      .||+++|+..++.++++
T Consensus       139 ~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A          139 EMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             CCGGGGSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHH
Confidence            99999999988777654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.4e-32  Score=198.63  Aligned_cols=181  Identities=24%  Similarity=0.221  Sum_probs=125.5

Q ss_pred             CCCCCCCCCC-CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------------------------h
Q psy6300           2 VATDDVSDLS-PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------------------------T   49 (185)
Q Consensus         2 ~~~~~~~~~~-g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------------------------~   49 (185)
                      |++++.++.. |.||||+|+..|+.+++++|+++|++++.++.....+                               +
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence            7899988764 9999999999999999999999999988766544333                               1


Q ss_pred             hhHHhh---------------ccCC---------cccCCCchhHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCChH
Q psy6300          50 YLHQAV---------------IGVN---------DVSDLSPELLLYRASTVHNLPVMCHALA-LGASKDWTNPNDDHRTY  104 (185)
Q Consensus        50 ~~~~~~---------------~~~~---------~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~  104 (185)
                      .++...               .+.+         ...+..|.||||+|+..|+.+++++|++ .|.+++..  +..|.++
T Consensus       128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~--d~~g~t~  205 (337)
T 4g8k_A          128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNA  205 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC--CTTSCCH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc--CCCCCcH
Confidence            111111               1111         1112245666666666666666666663 45666553  5556666


Q ss_pred             HHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         105 LHQAVIGNS----VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       105 l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                      ++.++..+.    ..++++|++.|++++..|..|.||||+|+..++.+++++|++. |++++.++..|.||||+|+..|+
T Consensus       206 l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             HHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC
Confidence            655443321    2355666666777777777788888888888888888888865 68888888888888888888888


Q ss_pred             ccccc
Q psy6300         180 ADIVT  184 (185)
Q Consensus       180 ~~~~~  184 (185)
                      .++++
T Consensus       286 ~~iv~  290 (337)
T 4g8k_A          286 KKIAE  290 (337)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88775

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-34  Score=207.04  Aligned_cols=154  Identities=23%  Similarity=0.261  Sum_probs=119.1

Q ss_pred             CCCCCC-CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC--
Q psy6300           2 VATDDV-SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN--   78 (185)
Q Consensus         2 ~~~~~~-~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~--   78 (185)
                      |++++. +|..|.||||+|+..|+.+++++|+++|++++.++.                     .|.||||+|+..|+  
T Consensus       120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~---------------------~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---------------------MGESCLVKAVKSVNNY  178 (327)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---------------------TCCCHHHHHHHSSHHH
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHhcccc
Confidence            688999 899999999999999999999999999999998877                     55566666665555  


Q ss_pred             -HHHHHHHHHcC-CCCCCCCCCCCCChHHHHHHh----cCCHHHHHHHHHcCC---------------------------
Q psy6300          79 -LPVMCHALALG-ASKDWTNPNDDHRTYLHQAVI----GNSVMACEYLILNGL---------------------------  125 (185)
Q Consensus        79 -~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~g~---------------------------  125 (185)
                       .+.+..+++.+ .+++..  +..|.||||+|+.    .|+.+++++|++.+.                           
T Consensus       179 ~~~~~~~ll~~~~~~~~~~--d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILE--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEE--CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cHHHHHHHHHhhhccccCC--CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence             34444444433 233332  5556666666665    556666665554421                           


Q ss_pred             ------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300         126 ------------------KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       126 ------------------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  178 (185)
                                        +++..|..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..|
T Consensus       257 ~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             cCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence                              57888999999999999999999999999999999999999999999998664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.6e-33  Score=197.45  Aligned_cols=154  Identities=21%  Similarity=0.185  Sum_probs=117.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++..|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.||||+|+..|+.++
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---------------------~g~tpL~~A~~~g~~~~  121 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---------------------EGWIPLHAAASCGYLDI  121 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCHHH
Confidence            466677777777777777777777777777777777666555                     78888888888888888


Q ss_pred             HHHHHHcCCCCCCCC----------------------------------------------------------CCCCCCh
Q psy6300          82 MCHALALGASKDWTN----------------------------------------------------------PNDDHRT  103 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~----------------------------------------------------------~~~~~~~  103 (185)
                      +++|+++|.+++...                                                          .+..|.|
T Consensus       122 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t  201 (299)
T 1s70_B          122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (299)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence            888888887776431                                                          1234667


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       104 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      |||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|..
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            7777888888888888888888888888888888888888888888888888888888888888888887754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.6e-33  Score=197.97  Aligned_cols=170  Identities=15%  Similarity=0.058  Sum_probs=143.5

Q ss_pred             CCCCCCC----CCCchHHHHHH---hcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHh
Q psy6300           3 ATDDVSD----LSPELLLYRAS---TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST   75 (185)
Q Consensus         3 ~~~~~~~----~~g~~~l~~A~---~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   75 (185)
                      ++++..+    ..|.||||+|+   ..|+.+++++|++.|+++.....          .........+..|.||||+|+.
T Consensus        33 ~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~----------~~~~~~~~~d~~g~t~L~~A~~  102 (260)
T 3jxi_A           33 KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE----------FINSPFRDVYYRGQTALHIAIE  102 (260)
T ss_dssp             CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH----------HHTCCBCCSSEESBCHHHHHHH
T ss_pred             CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh----------hhcccccccccCCCCHHHHHHH
Confidence            4455444    67999999999   77999999999999865432100          0001111222388999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCC--------------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHH
Q psy6300          76 VHNLPVMCHALALGASKDWTNPN--------------DDHRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPL  138 (185)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l  138 (185)
                      .|+.+++++|+++|.+++..  +              ..|.||||+|+..|+.+++++|++   .|++++..|..|.|||
T Consensus       103 ~g~~~~v~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL  180 (260)
T 3jxi_A          103 RRCKHYVELLVEKGADVHAQ--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL  180 (260)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             cCCHHHHHHHHhCCCCcCcc--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH
Confidence            99999999999999999876  4              579999999999999999999999   9999999999999999


Q ss_pred             HHHHHhCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300         139 YLATELGH---------TSQVCLLLKHKADQ-------HIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       139 ~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+|+..++         .+++++|++.|+++       +.++..|.||||+|+..|+.++++
T Consensus       181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence            99999887         69999999999998       679999999999999999999886

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.9e-33  Score=199.26  Aligned_cols=175  Identities=18%  Similarity=0.159  Sum_probs=143.3

Q ss_pred             CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHH
Q psy6300           4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLL   70 (185)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l   70 (185)
                      +++.+|..|.||||+|+..|+.+++++|++.|++++..+  ..++             +++...+.+.+. .+..|.|||
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L   99 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTAL   99 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHH
Confidence            578899999999999999999999999999999887763  2222             223333333333 344888999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300          71 YRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ  149 (185)
Q Consensus        71 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  149 (185)
                      |+|+..|+.+++++|+++|.+++..  +..| .||||.|+..|+.+++++|++.|++.... ..|.||||+|+..++.++
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHH
Confidence            9999999999999999998888865  6777 79999999999999999999988776322 278899999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcH-HHHHHHhCCccccc
Q psy6300         150 VCLLLKHKADQHIVDSSGVEP-LTLAVEKANADIVT  184 (185)
Q Consensus       150 v~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~~~~~~  184 (185)
                      +++|+++|++++.++..|.|| |++|+..|+.++++
T Consensus       177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            999999999999999999997 99999999988875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-31  Score=190.20  Aligned_cols=182  Identities=21%  Similarity=0.181  Sum_probs=155.5

Q ss_pred             CCCCCCC-CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDDVS-DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++.. +..|.||||+|+..|+.+++++|++.|++++..+....++             +++...+.+.+ ..+..|.
T Consensus        28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~  106 (285)
T 1wdy_A           28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGF  106 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCC
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccC
Confidence            5677777 7789999999999999999999999999998877665554             22222223332 3344889


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCC--------CCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNP--------NDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPL  138 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l  138 (185)
                      +|||+|+..|+.+++++|++.+.+++....        +..|.||||.|+..|+.+++++|++. |++++..+..|.|||
T Consensus       107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  186 (285)
T 1wdy_A          107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  186 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH
Confidence            999999999999999999999988876421        46688999999999999999999987 999999999999999


Q ss_pred             HHHHHhCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         139 YLATELGH----TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       139 ~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+|+..++    .+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus       187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  236 (285)
T 1wdy_A          187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            99999998    89999999999999999999999999999999988875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.2e-33  Score=197.78  Aligned_cols=166  Identities=19%  Similarity=0.162  Sum_probs=141.9

Q ss_pred             CCCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHH
Q psy6300           7 VSDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMC   83 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   83 (185)
                      ..|..|.||||+|+..   |+.+++++|++.|+++...       ..+   ........+..|.||||+|+..|+.++++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~-------~~~---i~~~~~~~d~~g~tpL~~A~~~g~~~~v~  118 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL-------KQF---VNASYTDSYYKGQTALHIAIERRNMTLVT  118 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH-------HHH---HTCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch-------hHH---hhcccccccCCCCCHHHHHHHcCCHHHHH
Confidence            4588999999999987   9999999999998754321       000   00000112238999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCC--------------CCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300          84 HALALGASKDWTNPND--------------DHRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPLYLATELGH  146 (185)
Q Consensus        84 ~ll~~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~  146 (185)
                      +|+++|.+++..  +.              .|.||||+|+..|+.+++++|++   .|++++..|..|.||||+|+..++
T Consensus       119 ~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          119 LLVENGADVQAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HHHHTTCCTTCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHCCCCcCcc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence            999999999876  44              69999999999999999999999   999999999999999999999988


Q ss_pred             ---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHhCCccccc
Q psy6300         147 ---------TSQVCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       147 ---------~~~v~~Ll~~g~~~~-------~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                               .+++++|++.|++++       .++..|.|||++|+..|+.++++
T Consensus       197 ~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence                     799999999999987       48999999999999999999876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-32  Score=195.42  Aligned_cols=153  Identities=22%  Similarity=0.261  Sum_probs=141.9

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..|.|||+.|+..|+.+++++|++.|++++..+.                     .|.||||+|+..|+.+++++|++.
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~   95 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV---------------------DGLTALHQACIDDNVDMVKFLVEN   95 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---------------------TCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC---------------------CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            44678999999999999999999999999988876                     899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC------------------------------------
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA------------------------------------  132 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~------------------------------------  132 (185)
                      |.+++..  +..|.||||+|+..|+.+++++|++.|++++..+.                                    
T Consensus        96 ga~~~~~--~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  173 (299)
T 1s70_B           96 GANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE  173 (299)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhh
Confidence            9999875  78999999999999999999999999998876543                                    


Q ss_pred             ------------------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         133 ------------------------QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       133 ------------------------~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                                              .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence                                    4678899999999999999999999999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=5e-33  Score=181.49  Aligned_cols=150  Identities=19%  Similarity=0.127  Sum_probs=118.9

Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300           1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      |....+..+..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+ .|+.+
T Consensus         1 mep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~-~~~~~   58 (156)
T 1bi7_B            1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS---------------------YGRRPIQVMM-MGSAR   58 (156)
T ss_dssp             ---------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---------------------SSCCTTTSSC-TTCHH
T ss_pred             CCCCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHH-cCCHH
Confidence            5566778889999999999999999999999999999988776                     8999999985 89999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCh-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          81 VMCHALALGASKDWTNPNDDHRT-YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      ++++|+++|.+++..  +..|.| |||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++
T Consensus        59 ~v~~Ll~~g~~~~~~--d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           59 VAELLLLHGAEPNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHHHTTTCCCCCC--CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHHHHHcCCCCCCc--CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            999999999999876  788999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHH
Q psy6300         160 QHIVDSSGVEPLTLA  174 (185)
Q Consensus       160 ~~~~~~~~~t~l~~A  174 (185)
                      ++.++..|.||.+.+
T Consensus       137 ~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          137 TRGSNHARIDAAEGP  151 (156)
T ss_dssp             ---------------
T ss_pred             CCccCcCcCcccccC
Confidence            999999999998744

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.7e-33  Score=190.78  Aligned_cols=150  Identities=25%  Similarity=0.187  Sum_probs=139.9

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcC--CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALG--ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      .+..|.||||.|+..|+.+++++|++.|  .+++..+.                     .|.+|||+|+..++.+++++|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~~~~L  126 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN---------------------QGVTCLHLAVGKKWFEVSQFL  126 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT---------------------TCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc---------------------CCCCHHHHHHHcCCHhHHHHH
Confidence            7789999999999999999999999999  66666655                     899999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCCC
Q psy6300          86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHIV  163 (185)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~  163 (185)
                      +++|.+++..  +..|.||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..++.+++++|+ +.|++++.+
T Consensus       127 l~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~  204 (228)
T 2dzn_A          127 IENGASVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV  204 (228)
T ss_dssp             HHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred             HHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence            9999999876  789999999999999999999999999 999999999999999999999999999999 889999999


Q ss_pred             CCCCCcHHHHHHHhCCc
Q psy6300         164 DSSGVEPLTLAVEKANA  180 (185)
Q Consensus       164 ~~~~~t~l~~A~~~~~~  180 (185)
                      +..|.||+++|...+..
T Consensus       205 ~~~g~t~l~~A~~~~~~  221 (228)
T 2dzn_A          205 DNKGAKAEDVALNEQVK  221 (228)
T ss_dssp             CTTSCBGGGGCSSTTHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999765443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=186.09  Aligned_cols=180  Identities=19%  Similarity=0.129  Sum_probs=141.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-CCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++..+..|.||||.|+..|+.+++++|++.|.+++..... ..++             +.+...+...+. .+..|.
T Consensus        32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~  110 (240)
T 3eu9_A           32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGC  110 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSC
T ss_pred             CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCC
Confidence            6778888888888999999999999999988888877654332 2222             112222222222 334778


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhC
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS-VMACEYLILNGLKINCPDA-QGKTPLYLATELG  145 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~  145 (185)
                      +|||+|+..|+.+++++|++++.+++..  +..|.||||.|+..+. .+++++|+..|++++..+. .|.||||+|+..+
T Consensus       111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          111 SCIHLAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHcCHHHHHHHHHhcCCCcccc--CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence            8888888888888888888888887765  6778888888885554 7788888888888888776 7889999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       146 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.+++++|++.|++++.++..|.||+++|+..|+.++++
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999999999999999999999999988875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.8e-33  Score=199.33  Aligned_cols=170  Identities=14%  Similarity=0.048  Sum_probs=136.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCc-h
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSP-E   67 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~   67 (185)
                      |++++..  +|.||||+|+..|+.+++++|++.|++++.++....++             +++...+.+.+.... .| .
T Consensus        54 g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~  130 (285)
T 3kea_A           54 GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWK  130 (285)
T ss_dssp             TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGG
T ss_pred             CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCC
Confidence            4555655  37888888888888888888888888887766554443             223333333333333 66 8


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHhCC
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTP-LYLATELGH  146 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~  146 (185)
                      +|||+|+..|+.+++++|++++.+...   ...|.||||.|+..|+.+++++|++.|++++..+..|.|| ||+|+..++
T Consensus       131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          131 TSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             SHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence            999999999999999999999877642   1389999999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       147 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .+++++|+++|++++.++.       .|+..|+.++++
T Consensus       208 ~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~  238 (285)
T 3kea_A          208 IEMLQALFKYDINIYSANL-------ENVLLDDAEIAK  238 (285)
T ss_dssp             HHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHH
Confidence            9999999999999998874       345566666654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.5e-33  Score=203.18  Aligned_cols=180  Identities=16%  Similarity=0.044  Sum_probs=148.3

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc------------CCcccCCCchhHH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG------------VNDVSDLSPELLL   70 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l   70 (185)
                      .+++..|..|.||||+|+..|+.+++++|++.|++++..+....++  ++.+...            ........|.+||
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~--L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L   88 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA--LHLACKFGCVDTAKYLASVGEVHSLWHGQKPI   88 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH--HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH--HHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence            4667788899999999999999999999999999998887655544  2222211            1133334788999


Q ss_pred             HHHHhcCCHHHHHHHHHc----CCCCCC---------------CCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCC
Q psy6300          71 YRASTVHNLPVMCHALAL----GASKDW---------------TNPNDDHRTYLHQAVIGN--SVMACEYLILNGLKINC  129 (185)
Q Consensus        71 ~~a~~~~~~~~~~~ll~~----~~~~~~---------------~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~  129 (185)
                      |+|+..|+.+++++|++.    +.+++.               ...+..|.||||+|+..|  +.+++++|++.|++++.
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~  168 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA  168 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence            999999999999999887    655543               002567999999999999  99999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         130 PDAQGKTPLYLATELGHTSQVCLLLKHKAD-----QHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       130 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|..|.||||+|+..++.+++++|++.|++     ++..+..|.||||+|+..|+.++++
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999988     9999999999999999999998876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=3e-32  Score=173.93  Aligned_cols=134  Identities=19%  Similarity=0.120  Sum_probs=127.1

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +++++..+..|.||||.|+..|+.+++++|++.|++++.++.                     .|.+|||+|+. ++.++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~-~~~~~   59 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR---------------------FGRRPIQVMMM-GSAQV   59 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCTTTTTSTT-SCHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC---------------------CCCCHHHHHHc-CCHHH
Confidence            578899999999999999999999999999999999988776                     89999999999 99999


Q ss_pred             HHHHHHcCCCCCCCCCCCC-CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          82 MCHALALGASKDWTNPNDD-HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      +++|++++.+++..  +.. |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|+|
T Consensus        60 v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           60 AELLLLHGAEPNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCCSSCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999876  778 99999999999999999999999999999999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.4e-31  Score=192.32  Aligned_cols=173  Identities=24%  Similarity=0.130  Sum_probs=141.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCC---------
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVN---------   59 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~---------   59 (185)
                      |++++.+|..|.||||+|+..|+.+++++|++.|++++..+....++             +++...+.+..         
T Consensus        81 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            56777777778888888888888888888888877777665544333             11111111111         


Q ss_pred             --------------------------------------------cccCCCchhHHHHHHhc---CCHHHHHHHHHcCCCC
Q psy6300          60 --------------------------------------------DVSDLSPELLLYRASTV---HNLPVMCHALALGASK   92 (185)
Q Consensus        60 --------------------------------------------~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~   92 (185)
                                                                  ......+.+|||+|+..   +..+++++|++.+.++
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence                                                        12334778999999998   5579999999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy6300          93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLT  172 (185)
Q Consensus        93 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  172 (185)
                      +..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||++
T Consensus       241 ~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          241 NEK--NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             TCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            876  789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy6300         173 LAVE  176 (185)
Q Consensus       173 ~A~~  176 (185)
                      +|..
T Consensus       319 ~a~~  322 (351)
T 3utm_A          319 MGNE  322 (351)
T ss_dssp             HSCH
T ss_pred             hhhH
Confidence            9844

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=1.1e-32  Score=191.65  Aligned_cols=152  Identities=18%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..|.|||+.|++.++.++++.|+++|++++.. .                     .+.++||.|+..|+.+++++|++.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~---------------------~~~t~L~~A~~~g~~~~v~~Ll~~   59 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P---------------------LPLALLLDSSLEGEFDLVQRIIYE   59 (239)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-c---------------------hhhHHHHHHHHcCCHHHHHHHHHc
Confidence            456999999999999999999999999998754 3                     788999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV  168 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  168 (185)
                      +.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..+.
T Consensus        60 g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B           60 VDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             TSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             CCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence            9998876  88999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             -cHHHHH--HHhCCccccc
Q psy6300         169 -EPLTLA--VEKANADIVT  184 (185)
Q Consensus       169 -t~l~~A--~~~~~~~~~~  184 (185)
                       ||+++|  +..|+.++++
T Consensus       138 ~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             CCHHHHCCSSSTTCCCHHH
T ss_pred             cchHHHHHHhhhccHHHHH
Confidence             999999  7888888875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.5e-33  Score=193.63  Aligned_cols=156  Identities=20%  Similarity=0.155  Sum_probs=137.2

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHHcCC----CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           6 DVSDLSPELLLYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +..|..|.||||+|+..|+.+++++|++.+.    +++..+.                     .|.+|||+|+..|+.++
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   60 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN---------------------LQQTPLHLAVITNQPEI   60 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT---------------------TCCCHHHHHHHTTCHHH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC---------------------CCCCHHHHHHHcCCHHH
Confidence            4578899999999999999999999888765    4555555                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK------INCPDAQGKTPLYLATELGHTSQVCLLLK  155 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  155 (185)
                      +++|+++|.+++..  +..|.||||+|+..|+.+++++|+..|.+      ++..+..|.||||+|+..++.+++++|++
T Consensus        61 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  138 (236)
T 1ikn_D           61 AEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS  138 (236)
T ss_dssp             HHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999875  78999999999999999999999999875      46778889999999999999999999999


Q ss_pred             CCCCCCCCCC-CCCcHHHHHHHhCCccccc
Q psy6300         156 HKADQHIVDS-SGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       156 ~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|++++.++. .|.||||+|+..|+.++++
T Consensus       139 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~  168 (236)
T 1ikn_D          139 LGADVNAQEPCNGRTALHLAVDLQNPDLVS  168 (236)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999997 9999999999999998876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=6e-32  Score=189.54  Aligned_cols=150  Identities=17%  Similarity=0.089  Sum_probs=134.8

Q ss_pred             CCchHHHHHHhcCChH----HHHHHHHcCCCCCC----CCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCH
Q psy6300          11 SPELLLYRASTVHNLP----VMCHALALGASKDW----TNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNL   79 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~----~~~~ll~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~   79 (185)
                      .|.||||.|+..|+.+    ++++|++.|++++.    .+.                     .|.||||+|+..   |+.
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~---------------------~g~t~L~~A~~~~~~g~~   59 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS---------------------TGKTCLMKAVLNLQDGVN   59 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT---------------------TTBCHHHHHHHTCBTTBC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC---------------------CCCCHHHHHHHccccchH
Confidence            4899999999999997    66778889999887    555                     899999999999   999


Q ss_pred             HHHHHHHHcCCCCCCC---------CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-------------CCcH
Q psy6300          80 PVMCHALALGASKDWT---------NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-------------GKTP  137 (185)
Q Consensus        80 ~~~~~ll~~~~~~~~~---------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~~t~  137 (185)
                      +++++|++.+.+++..         .+|..|.||||+|+..|+.+++++|++.|++++..+..             |.||
T Consensus        60 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence            9999999988776532         12467999999999999999999999999999998876             9999


Q ss_pred             HHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHH--hCCcc
Q psy6300         138 LYLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVE--KANAD  181 (185)
Q Consensus       138 l~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~--~~~~~  181 (185)
                      ||+|+..++.+++++|++   .|++++.++..|.||||+|+.  .++.+
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~  188 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE  188 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence            999999999999999999   999999999999999999999  66655

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=6.2e-31  Score=178.01  Aligned_cols=152  Identities=20%  Similarity=0.139  Sum_probs=140.3

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300          10 LSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      ..+.|||+.|+..|+.+.++.|++.+. +++..+.                     .|.+|||+|+..|+.+++++|++.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~   61 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT---------------------EGNTPLNIAVHNNDIEIAKALIDR   61 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            468899999999999999999998776 7777766                     899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCC
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSS  166 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~  166 (185)
                      |.+++..  +..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..++.+++++|++.| ++++.++..
T Consensus        62 g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           62 GADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            9999875  788999999999999999999999 567899999999999999999999999999999999 999999999


Q ss_pred             CCcHHHHHHHhCC-----ccccc
Q psy6300         167 GVEPLTLAVEKAN-----ADIVT  184 (185)
Q Consensus       167 ~~t~l~~A~~~~~-----~~~~~  184 (185)
                      |.||||+|+..++     .++++
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999887     56654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=1e-30  Score=181.14  Aligned_cols=178  Identities=17%  Similarity=0.157  Sum_probs=141.5

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHH
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLY   71 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~   71 (185)
                      ++..|..|.++|+.|+..|+.+++++|++.|++++..+....++             +++...+..........+.+|||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45678899999999999999999999999999988876654433             22333333333444445788888


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCC-HHHH
Q psy6300          72 RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH-TSQV  150 (185)
Q Consensus        72 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-~~~v  150 (185)
                      +|+..|+.+++++|++.+.+++..  +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence            888888888888888888887765  6778888888888888888888888888888888888888888886665 6788


Q ss_pred             HHHHhCCCCCCCCCC-CCCcHHHHHHHhCCccccc
Q psy6300         151 CLLLKHKADQHIVDS-SGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       151 ~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++|++.|++++..+. .|.|||++|+..|+.++++
T Consensus       160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence            888888888888776 7888888888888887765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5e-33  Score=192.15  Aligned_cols=155  Identities=19%  Similarity=0.145  Sum_probs=139.6

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      ..+..|.||||.|+..|+.+++++|++.|++++..+.                     .|.||||+|+..|+.+++++|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---------------------~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE---------------------EGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence            3456688899999999999999999999999988777                     8999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HHhCCHHHHHHHHhCCCCCC--
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLA--TELGHTSQVCLLLKHKADQH--  161 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A--~~~~~~~~v~~Ll~~g~~~~--  161 (185)
                      +.|.+++..  |..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..++.+++++|++.|++++  
T Consensus        75 ~~ga~~n~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           75 TAGANVNSP--DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             HTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             HCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence            999999876  8899999999999999999999999999999987 5999999999  99999999999998765543  


Q ss_pred             ------------------------------CCCCCCCcHHHHHHHhCCccccc
Q psy6300         162 ------------------------------IVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       162 ------------------------------~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                                                    .++..|.|||++|+..|+.++++
T Consensus       153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence                                          34667888999998888888875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.6e-31  Score=175.83  Aligned_cols=143  Identities=22%  Similarity=0.151  Sum_probs=130.1

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300           5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH   84 (185)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   84 (185)
                      ++..|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.+++++
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~   87 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---------------------ERESALSLASTGGYTDIVGL   87 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc---------------------cCCCHHHHHHHCCCHHHHHH
Confidence            677899999999999999999999999999999988776                     88999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Q psy6300          85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD  164 (185)
Q Consensus        85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  164 (185)
                      |++++.+++..  +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++...++
T Consensus        88 Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A           88 LLERDVDINIY--DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             HHTTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred             HHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence            99999999875  7899999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCCCcH
Q psy6300         165 SSGVEP  170 (185)
Q Consensus       165 ~~~~t~  170 (185)
                      ..+.||
T Consensus       166 ~~~~~p  171 (172)
T 3v30_A          166 LVPADP  171 (172)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            888876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.7e-31  Score=188.96  Aligned_cols=161  Identities=20%  Similarity=0.179  Sum_probs=131.1

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHc----CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc-
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALAL----GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV-   76 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-   76 (185)
                      ++..+..|..|.||||.|+..|+.++++.|++.    +.+++...                 ...+..|.||||+|+.. 
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-----------------~~~~~~g~tpL~~A~~~~   65 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE-----------------FKDPETGKTCLLKAMLNL   65 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG-----------------GSCTTTCCCHHHHHHHSC
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc-----------------cccCcCCCCHHHHHHHHH
Confidence            456778899999999999999999999888874    44443110                 01122899999999987 


Q ss_pred             --CCHHHHHHHHHcCCCC---------CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-------------
Q psy6300          77 --HNLPVMCHALALGASK---------DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-------------  132 (185)
Q Consensus        77 --~~~~~~~~ll~~~~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------------  132 (185)
                        |+.+++++|++.|.+.         ....++..|.||||+|+..|+.+++++|++.|++++..+.             
T Consensus        66 ~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  145 (273)
T 2pnn_A           66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF  145 (273)
T ss_dssp             BTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCC
T ss_pred             hcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccc
Confidence              9999999999987542         2222356899999999999999999999999999999887             


Q ss_pred             -CCCcHHHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         133 -QGKTPLYLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       133 -~~~t~l~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                       .|.||||+|+..++.+++++|++   .|++++.++..|.||||+|+..|+
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence             79999999999999999999999   999999999999999999999887

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=2.8e-31  Score=195.54  Aligned_cols=179  Identities=18%  Similarity=0.216  Sum_probs=149.7

Q ss_pred             CCCCCCC-CCCchHHHHHHhcCChHHHHHHH--------HcCCCCCCCCCCCCCc-------------hhhHHhhccCCc
Q psy6300           3 ATDDVSD-LSPELLLYRASTVHNLPVMCHAL--------ALGASKDWTNPNDDHR-------------TYLHQAVIGVND   60 (185)
Q Consensus         3 ~~~~~~~-~~g~~~l~~A~~~g~~~~~~~ll--------~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~   60 (185)
                      .+++..| ..|.||||+|+..|+.+++++|+        +.|++++..+....++             +++...+.+.+.
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  194 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI  194 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence            4677888 78999999999999998887765        8899999887765554             223333333333


Q ss_pred             ccCCCchhHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCCChHHHHHHhcC---CHHHHHHHHHcCCCCCC-----
Q psy6300          61 VSDLSPELLLYRASTVHNLPVMCHALALG---ASKDWTNPNDDHRTYLHQAVIGN---SVMACEYLILNGLKINC-----  129 (185)
Q Consensus        61 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~g~~~~~-----  129 (185)
                       .+..|.+|||+|+..|+.+++++|++.+   .+++..  +..|.||||+|+..+   +.+++++|++.|++++.     
T Consensus       195 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  271 (373)
T 2fo1_E          195 -YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  271 (373)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC--CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             -cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc--CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence             3448889999999999999999999876   567664  788999999999887   78999999999999876     


Q ss_pred             ---CCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         130 ---PDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       130 ---~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                         .+..|.||||+|+..++.+++++|++.+ ++++.++..|.||||+|+..|+.++++
T Consensus       272 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~  330 (373)
T 2fo1_E          272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  330 (373)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence               5678999999999999999999999876 999999999999999999999998876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.4e-30  Score=169.56  Aligned_cols=134  Identities=17%  Similarity=0.151  Sum_probs=125.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++..+..|.||||+|+. |+.+++++|++.|++++.++.                     .|.+|||+|+..|+.++
T Consensus        28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A           28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR---------------------TGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred             CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHH
Confidence            67889999999999999999 999999999999999988776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      +++|++++.+++..  +..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..++.+++++|+++|+|
T Consensus        86 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           86 LQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999998876  88999999999999999999999999988 589999999999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=9.7e-30  Score=167.92  Aligned_cols=133  Identities=23%  Similarity=0.174  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.||||.|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus        37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   95 (169)
T 2y1l_E           37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH---------------------AGMTPLRLAALFGHLEI   95 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC---------------------CCCCHHHHHHHcCCHHH
Confidence            688999999999999999999999999999999999888776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      +++|++++.+++..  +..|.||||.|+..++.+++++|++.|++++..|..|.|||++|+..++.+++++|++.|
T Consensus        96 ~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           96 VEVLLKNGADVNAN--DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999875  788999999999999999999999999999999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=6.8e-30  Score=170.12  Aligned_cols=142  Identities=16%  Similarity=0.022  Sum_probs=133.9

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   87 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR---------------------GDDTPLHLAASHGHRDI   87 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHTTCHHH
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence            457889999999999999999999999999999999988876                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      +++|++.|.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.|||++|+..++.+++++|++.|++++
T Consensus        88 v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A           88 VQKLLQYKADINAV--NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999876  8899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCC
Q psy6300         162 IVDSS  166 (185)
Q Consensus       162 ~~~~~  166 (185)
                      ..+..
T Consensus       166 ~~~~~  170 (179)
T 3f6q_A          166 RIPYK  170 (179)
T ss_dssp             CBCCC
T ss_pred             cCCcc
Confidence            76544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=2.8e-29  Score=157.68  Aligned_cols=126  Identities=29%  Similarity=0.279  Sum_probs=119.3

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      +|.||||.|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..++.+++++|++.+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~   59 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---------------------NGRTPLHLAARNGHLEVVKLLLEAGA   59 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---------------------CCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            589999999999999999999999999887766                     88999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      +++..  +..|.||||.|+..++.+++++|++.|++++..+..|.|||++|+..++.+++++|+++|+|
T Consensus        60 ~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           60 DVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCccc--CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            98875  78899999999999999999999999999999999999999999999999999999999986

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.1e-29  Score=184.49  Aligned_cols=151  Identities=22%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHH-cCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC----HHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALA-LGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN----LPV   81 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~   81 (185)
                      ..+..|.||||+|+..|+.+++++|++ .|++++.++.                     .|.++++.++..+.    ..+
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~---------------------~g~t~l~~~~~~~~~~~~~~i  221 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN---------------------MGRNALIHALLSSDDSDVEAI  221 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT---------------------TSCCHHHHHHHHSCTTTHHHH
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC---------------------CCCcHHHHHHHHcCcccHHHH
Confidence            456679999999999999999999995 5899988876                     88888887765443    356


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      +++|+++|.+++.+  +..|.||||.|+..|+.+++++|+.. |++++..|..|+||||+|+..|+.++|++|+++|+++
T Consensus       222 ~~lLl~~gad~n~~--d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          222 THLLLDHGADVNVR--GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             HHHHHHTTCCTTCC--CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             HHHHHHCCCCCCCc--CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            78889999999876  78899999999999999999999974 7999999999999999999999999999999999998


Q ss_pred             CCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         161 HIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       161 ~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      +.+     +||++|+..|+.+++++
T Consensus       300 n~~-----~~L~~A~~~~~~~iv~~  319 (337)
T 4g8k_A          300 DCG-----DLVMTARRNYDHSLVKV  319 (337)
T ss_dssp             TTC-----CHHHHHHHTTCHHHHHH
T ss_pred             CCC-----CHHHHHHHcCCHHHHHH
Confidence            764     59999999999988763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=4.1e-31  Score=176.92  Aligned_cols=149  Identities=12%  Similarity=0.076  Sum_probs=131.6

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCH----HHHHHHHH
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNL----PVMCHALA   87 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~ll~   87 (185)
                      +.++|+.|++.|+++.++.+++.+.+.  .+                    +..|.||||+|+..++.    +++++|++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~--------------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~   63 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KE--------------------SVLKSNILYDVLRNNNDEARYKISMFLIN   63 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HH--------------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--cc--------------------ccCCCCHHHHHHHcCCcchHHHHHHHHHH
Confidence            567899999999999999999887542  21                    01789999999999975    58999999


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHhCC-----HHHHHHHHh
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNS------VMACEYLILNGLKINCPDAQGK-TPLYLATELGH-----TSQVCLLLK  155 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~-----~~~v~~Ll~  155 (185)
                      +|++++.+  +..|.||||+|+..++      .+++++|++.|++++..|..|. ||||+|+..+.     .+++++|++
T Consensus        64 ~Gadvn~~--d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           64 KGADIKSR--TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             TTCCSSCC--CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             CCCCCCCC--CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            99999986  8899999999998886      5789999999999999999999 99999999443     469999999


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         156 -HKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       156 -~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                       .|++++.++..|.|||++|+..|+.++++
T Consensus       142 ~~gad~~~~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          142 QSGLQLLIKDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred             hcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence             99999999999999999999999988876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=2.2e-29  Score=160.55  Aligned_cols=127  Identities=21%  Similarity=0.145  Sum_probs=104.6

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA   87 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   87 (185)
                      ....+.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..++.+++++|++
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~   68 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE---------------------YGLTPLYLATAHGHLEIVEVLLK   68 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHH
Confidence            345578888888888888888888888888877765                     78888888888888888888888


Q ss_pred             cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      .+.+++..  |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|
T Consensus        69 ~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           69 NGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88887765  678888888888888888888888888888888888888888888888888888888765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=6e-30  Score=179.68  Aligned_cols=154  Identities=18%  Similarity=0.116  Sum_probs=131.5

Q ss_pred             CCCCchHHHHHHhcCChHH----HHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH---hcCCHHH
Q psy6300           9 DLSPELLLYRASTVHNLPV----MCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS---TVHNLPV   81 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~----~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~---~~~~~~~   81 (185)
                      +..+.++||.|++.|+.+.    +++|++.|.+++..+.                 ..+..|.||||+|+   ..|+.++
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~-----------------~~~~~g~t~L~~A~~~~~~g~~~~   64 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEF-----------------REPSTGKTCLPKALLNLSAGRNDT   64 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGG-----------------SCTTTCCCHHHHHHTSCBTTBCTH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhh-----------------hccCCCCcHHHHHHHHhhcCCHHH
Confidence            4578999999999999995    4555559988876541                 01117999999999   6799999


Q ss_pred             HHHHHHcCCC---------CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHH
Q psy6300          82 MCHALALGAS---------KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD--------------AQGKTPL  138 (185)
Q Consensus        82 ~~~ll~~~~~---------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~~~t~l  138 (185)
                      +++|++.+.+         ......|..|.||||+|+..|+.+++++|++.|++++..+              ..|.|||
T Consensus        65 v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL  144 (260)
T 3jxi_A           65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL  144 (260)
T ss_dssp             HHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHH
T ss_pred             HHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHH
Confidence            9999988744         2222234589999999999999999999999999999988              6899999


Q ss_pred             HHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         139 YLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       139 ~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                      |+|+..++.+++++|++   .|++++.++..|.||||+|+..++
T Consensus       145 ~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhcc
Confidence            99999999999999999   999999999999999999998877

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.8e-29  Score=165.31  Aligned_cols=136  Identities=21%  Similarity=0.115  Sum_probs=128.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +++++..|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus        26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   84 (167)
T 3v31_A           26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---------------------GRESALSLACSKGYTDI   84 (167)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC---------------------CCCcHHHHHHHcCCHHH
Confidence            567889999999999999999999999999999999988776                     88999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      +++|++.+.+++..  +..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..++.+++++|++++.+.
T Consensus        85 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           85 VKMLLDCGVDVNEY--DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999875  788999999999999999999999999999999999999999999999999999999887554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.4e-29  Score=168.50  Aligned_cols=133  Identities=17%  Similarity=0.077  Sum_probs=126.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++..+..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus        58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~  116 (192)
T 2rfm_A           58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF---------------------SGKTPLMWSIIFGYSEM  116 (192)
T ss_dssp             HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred             ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCHHH
Confidence            567889999999999999999999999999999999888776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      +++|++.|.+++..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||+++|+..++.+++++|++.|
T Consensus       117 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          117 SYFLLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999876  889999999999999999999999999999999999999999999999999999999764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.6e-29  Score=161.23  Aligned_cols=117  Identities=25%  Similarity=0.309  Sum_probs=113.0

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~  143 (185)
                      .+.+|||+|+..|+.+++++|++.+.+++..  +..|.||||+|+. ++.+++++|++.|++++..|.. |.||||+|+.
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            8999999999999999999999999998875  7899999999999 9999999999999999999999 9999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~  128 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR  128 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999998876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=6.9e-28  Score=165.48  Aligned_cols=157  Identities=22%  Similarity=0.105  Sum_probs=135.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++..+..|.||||+|+..|+.+++++|++.+. +++..+....++             +.+...+...+. .+..|.
T Consensus        48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~  126 (223)
T 2f8y_A           48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGK  126 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCC
Confidence            67899999999999999999999999999999987 666665554443             222232233333 344899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      +|||+|+..|+.+++++|+++|.+++..  +..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGANKDMQ--NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch
Confidence            9999999999999999999999999876  78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCC
Q psy6300         148 SQVCLLLKHKADQH  161 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~  161 (185)
                      +++++|+++|+...
T Consensus       205 ~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          205 DIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHHTTCSSC
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999998754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.1e-28  Score=158.99  Aligned_cols=128  Identities=20%  Similarity=0.103  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++.+ .+..|.||||.|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus        25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B           25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK---------------------VDRTPLHMAASEGHANI   82 (153)
T ss_dssp             TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcChHHH
Confidence            44554 578899999999999999999999999999888776                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      +++|+++|.+++..  +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|
T Consensus        83 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999876  88999999999999999999999999999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=9.1e-29  Score=162.55  Aligned_cols=132  Identities=21%  Similarity=0.145  Sum_probs=122.0

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM   82 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   82 (185)
                      .+.+..+..|.||||+|+..|+.+++++|++.|++++.++.                     .|.+|||+|+..|+.+++
T Consensus        33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v   91 (165)
T 3twr_A           33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK---------------------GGLVPLHNACSYGHYEVA   91 (165)
T ss_dssp             TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHH
T ss_pred             CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC---------------------CCCCHHHHHHHcCcHHHH
Confidence            45667788899999999999999999999999999988876                     899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q psy6300          83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA  158 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  158 (185)
                      ++|++.+.+++..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+. ++.+++++|++.|+
T Consensus        92 ~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           92 ELLVKHGAVVNVA--DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHhCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999876  7899999999999999999999999999999999999999999877 88999999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=4.4e-30  Score=178.49  Aligned_cols=154  Identities=17%  Similarity=0.127  Sum_probs=133.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.. ..|.||||.|+..|+.+++++|++.|++++.++.                     .|.||||+|+..|+.++
T Consensus        28 g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---------------------~g~t~L~~A~~~g~~~~   85 (239)
T 1ycs_B           28 GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND---------------------EGITALHNAVCAGHTEI   85 (239)
T ss_dssp             ----------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred             CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence            4566654 6789999999999999999999999999988877                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHH--HHhCCHHHHHHHHhCCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK-TPLYLA--TELGHTSQVCLLLKHKA  158 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~~A--~~~~~~~~v~~Ll~~g~  158 (185)
                      +++|+++|.+++..  |..|.||||+|+..|+.+++++|++.|++++..+..+. ||||+|  +..++.+++++|++.|+
T Consensus        86 v~~Ll~~ga~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a  163 (239)
T 1ycs_B           86 VKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  163 (239)
T ss_dssp             HHHHHHHTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh
Confidence            99999999999886  88999999999999999999999999999999998877 999999  78899999999999998


Q ss_pred             CCCCC---------CCCCCcHHHHHHHhCC
Q psy6300         159 DQHIV---------DSSGVEPLTLAVEKAN  179 (185)
Q Consensus       159 ~~~~~---------~~~~~t~l~~A~~~~~  179 (185)
                      +++..         +..+.++.+++...|.
T Consensus       164 ~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          164 KMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cccccccceEEEEeccCCCCCCcccccCCC
Confidence            88765         5567888877776664

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=1.3e-29  Score=161.73  Aligned_cols=132  Identities=20%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |+++ .+|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   58 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH---------------------AGWTPLHEACNHGHLKV   58 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC---------------------CCCCHHHHHHHcCCHHH
Confidence            5677 7888888888888888888888888888888777665                     77888888888888888


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      +++|++.+.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||+++|+..+..+++.+|.+.+
T Consensus        59 ~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           59 VELLLQHKALVNTT--GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHTTCCTTCC--CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHHcCCcccCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            88888888877765  677888888888888888888888888888888888888888888777777776665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3.6e-28  Score=158.22  Aligned_cols=130  Identities=21%  Similarity=0.178  Sum_probs=122.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +.+++..+..|.||||+ +..|+.+++++|++.|++++.++.                     .|.+|||+|+..|+.++
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~   83 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT---------------------SGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC---------------------CCCCHHHHHHHcCcHHH
Confidence            35788999999999999 999999999999999999988876                     89999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      +++|++.|.+++..  +..|.||||+|+..|+.+++++|++. ++++..|..|.||||+|+..++.+++++|+++
T Consensus        84 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           84 LKVLVEHGADVNVP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCc--CCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999998875  78999999999999999999999998 99999999999999999999999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=2.1e-28  Score=155.97  Aligned_cols=118  Identities=28%  Similarity=0.289  Sum_probs=113.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .+.+|||+|+..|+.+++++|++.+.+++..  |..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            7889999999999999999999999998876  78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  130 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE  130 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999998876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=6.4e-29  Score=158.55  Aligned_cols=119  Identities=24%  Similarity=0.274  Sum_probs=113.0

Q ss_pred             CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          64 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        64 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      ..|.+|||+|+..|+.+++++|++.+.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+.
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            38999999999999999999999999999875  7899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|+++|++++.++..|.||+++|+..+..++++
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence            99999999999999999999999999999999888777665

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.9e-29  Score=182.81  Aligned_cols=176  Identities=16%  Similarity=0.033  Sum_probs=141.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-------------C-CCc----------------hhh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-------------D-DHR----------------TYL   51 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-------------~-~~~----------------~~~   51 (185)
                      |++++..+..|.++++     |+.+++++|+++|++++.....             . ...                +.+
T Consensus        42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  116 (327)
T 1sw6_A           42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF  116 (327)
T ss_dssp             SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred             CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence            6888899999999987     8999999999999876552110             0 000                111


Q ss_pred             HHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC---HHHHHHHHHcC-CCC
Q psy6300          52 HQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS---VMACEYLILNG-LKI  127 (185)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~g-~~~  127 (185)
                      ...+.+.+...+..|.||||+|+..|+.+++++|+++|++++..  +..|.||||+|+..|+   .++++.|++.+ .++
T Consensus       117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~  194 (327)
T 1sw6_A          117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  194 (327)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence            12223334435669999999999999999999999999999975  8899999999999998   67778888776 778


Q ss_pred             CCCCCCCCcHHHHHHH----hCCHHHHHHHHhCCC---------------------------------------------
Q psy6300         128 NCPDAQGKTPLYLATE----LGHTSQVCLLLKHKA---------------------------------------------  158 (185)
Q Consensus       128 ~~~~~~~~t~l~~A~~----~~~~~~v~~Ll~~g~---------------------------------------------  158 (185)
                      +..|..|.||||+|+.    .++.+++++|++.+.                                             
T Consensus       195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~  274 (327)
T 1sw6_A          195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  274 (327)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence            9999999999999999    899999999987743                                             


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         159 DQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       159 ~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++.++..|.||||+|+..|+.++++
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~  300 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVD  300 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            57888999999999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=5.1e-29  Score=176.56  Aligned_cols=150  Identities=19%  Similarity=0.138  Sum_probs=135.9

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCC--CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGAS--KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG   89 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~   89 (185)
                      +.+++|.|+..|+++.++.+++.+.+  ++..+.                     .|.||||+|+..|+.+++++|++.|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~---------------------~g~T~Lh~A~~~g~~~~v~~Ll~~g  134 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADS---------------------NGNTALHYSVSHANFPVVQQLLDSG  134 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTS
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC---------------------CCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            45678889999999999998877655  555555                     8999999999999999999999999


Q ss_pred             C-CCCCCCCCCCCChHHHHHH-----hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCC
Q psy6300          90 A-SKDWTNPNDDHRTYLHQAV-----IGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIV  163 (185)
Q Consensus        90 ~-~~~~~~~~~~~~~~l~~a~-----~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  163 (185)
                      . +++..  +..|.||||.|+     ..++.+++++|+..|.+.+..+..|.||||+|+..++.+++++|++.|++++.+
T Consensus       135 ~~~~~~~--~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~  212 (276)
T 4hbd_A          135 VCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ  212 (276)
T ss_dssp             CCCTTCC--CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCcCCCC--CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            7 77765  789999999999     668899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhCCccccc
Q psy6300         164 DSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       164 ~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +..|.||||+|+..|+.++++
T Consensus       213 d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          213 DDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999998876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=5.7e-28  Score=151.43  Aligned_cols=117  Identities=27%  Similarity=0.303  Sum_probs=108.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .+.++||+|+..|+.+++++|++.+.+++..  +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            7889999999999999999999999998875  78999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      ++.+++++|+++|++++.++..|.||+++|...+..+++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            999999999999999999999999999999665554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=8.4e-28  Score=172.13  Aligned_cols=146  Identities=23%  Similarity=0.188  Sum_probs=122.9

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCHHHHHHHHHc
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNLPVMCHALAL   88 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~   88 (185)
                      ..++|+.|+..|+++.++.|++.|++++......               ..+..|.||||+|+..   ++.+++++|+++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~---------------~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~  215 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGP---------------DAQAPEELVLHLAVKVANQASLPLVDFIIQN  215 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECS---------------SSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCc---------------ccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence            4578999999999999999999999887631000               0112899999999987   899999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV  168 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  168 (185)
                      |.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++      .|.
T Consensus       216 gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~  287 (301)
T 2b0o_E          216 GGHLDAK--AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFA  287 (301)
T ss_dssp             SSCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTS
T ss_pred             CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCC
Confidence            9999876  88999999999999999999999999999999999999999999999999999999999876      478


Q ss_pred             cHHHHHHHhCCc
Q psy6300         169 EPLTLAVEKANA  180 (185)
Q Consensus       169 t~l~~A~~~~~~  180 (185)
                      ||||+|+..|+.
T Consensus       288 tpLh~A~~~g~~  299 (301)
T 2b0o_E          288 FPLHVDYSWVIS  299 (301)
T ss_dssp             SCCC--------
T ss_pred             ChhHHHHhcCCc
Confidence            999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=2e-27  Score=149.16  Aligned_cols=118  Identities=31%  Similarity=0.392  Sum_probs=112.9

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      +|.+|||+|+..|+.+++++|++.+.+++..  +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            4789999999999999999999999988875  78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++.+++++|+++|++++.++..|.||+++|+..++.++++
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  118 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK  118 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999999999999999999999999999998876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=167.79  Aligned_cols=137  Identities=27%  Similarity=0.329  Sum_probs=117.1

Q ss_pred             HHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q psy6300          28 MCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQ  107 (185)
Q Consensus        28 ~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~  107 (185)
                      ++.|++.|++++..+..                  +..+.++||+|+..|+.+++++|++.|.+++..  |..|.||||+
T Consensus         1 v~~ll~~~~~~~~~~~~------------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~   60 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRA------------------RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--NEEGITALHN   60 (229)
T ss_dssp             ---------CCCCCCCT------------------TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC--CTTSCCHHHH
T ss_pred             CeehhccCCCCcccccc------------------ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCHHHH
Confidence            35678888877665432                  227889999999999999999999999999875  8899999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHhCCccccc
Q psy6300         108 AVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD-SSGVEPLTLA--VEKANADIVT  184 (185)
Q Consensus       108 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~A--~~~~~~~~~~  184 (185)
                      |+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++.++ ..|.|||++|  +..|+.++++
T Consensus        61 A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence            999999999999999999999999999999999999999999999999999999986 6999999999  8888888775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.4e-28  Score=156.65  Aligned_cols=117  Identities=24%  Similarity=0.273  Sum_probs=112.0

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t-~l~~A~~  143 (185)
                      .+.+|||+|+..|+.+++++|+++|.+++..  +..|.||||+|+ .|+.+++++|++.|++++..|..|.| |||+|+.
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            8899999999999999999999999998875  789999999985 89999999999999999999999999 9999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~  128 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR  128 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHH
Confidence            99999999999999999999999999999999999998875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=6.1e-28  Score=165.87  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=112.7

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..|.||||.|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..|+.+++++|++.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~  128 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK---------------------AGSTALYWACHGGHKDIVEMLFTQ  128 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCC---------------------CCCCHHHHHHHcCCHHHHHHHHcC
Confidence            45678999999999999999999999999888776                     899999999999999999999998


Q ss_pred             -CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300          89 -GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG  167 (185)
Q Consensus        89 -~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  167 (185)
                       +.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.|||++|+..+..++++.|++.|++.+..+..+
T Consensus       129 ~g~~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          129 PNIELNQQ--NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             TTCCCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             CCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence             8888876  8899999999999999999999999999999999999999999999999999999999998887665543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=2.5e-27  Score=165.05  Aligned_cols=134  Identities=18%  Similarity=0.128  Sum_probs=119.2

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300          10 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG   89 (185)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~   89 (185)
                      ..|.||||.|+..|+.+++++|++ |++++.++.                     .|.||||+|+..|+.+++++|+++|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~g  100 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---------------------NGRTALLFVAGLGSDKCVRLLAEAG  100 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT---------------------TSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC---------------------CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            368899999999999999999999 888888776                     8999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300          90 ASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV  168 (185)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  168 (185)
                      .+++..  + ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..+.                 ...+.
T Consensus       101 a~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~  161 (244)
T 3ui2_A          101 ADLDHR--DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKG  161 (244)
T ss_dssp             CCTTCC--CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCS
T ss_pred             CCCCcC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCC
Confidence            999875  5 679999999999999999999999999999999999999999986322                 24578


Q ss_pred             cHHHHHHHhCCccccc
Q psy6300         169 EPLTLAVEKANADIVT  184 (185)
Q Consensus       169 t~l~~A~~~~~~~~~~  184 (185)
                      |||++|+..|+.++++
T Consensus       162 ~~l~~a~~~g~~~iv~  177 (244)
T 3ui2_A          162 NPMQFGRRIGLEKVIN  177 (244)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcChHHHHH
Confidence            8999999998887765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=2.8e-27  Score=158.08  Aligned_cols=135  Identities=19%  Similarity=0.126  Sum_probs=116.6

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..|.||||.|+..|+.+++++|++ |++++..+.                     .|.||||+|+..|+.+++++|+++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~   98 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---------------------NGRTALLFVAGLGSDKCVRLLAEA   98 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3468899999999999999999998 888887776                     888999999999999999999999


Q ss_pred             CCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300          89 GASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG  167 (185)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  167 (185)
                      |.+++..  + ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.                 ..+
T Consensus        99 ga~~~~~--~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~  159 (183)
T 3deo_A           99 GADLDHR--DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPK  159 (183)
T ss_dssp             TCCTTCC--CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCC
T ss_pred             CCCCCcC--CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------ccc
Confidence            9988875  5 7799999999999999999999999999999999999999999875321                 345


Q ss_pred             CcHHHHHHHhCCccccc
Q psy6300         168 VEPLTLAVEKANADIVT  184 (185)
Q Consensus       168 ~t~l~~A~~~~~~~~~~  184 (185)
                      .+|+++|+..|+.++++
T Consensus       160 ~~~l~~a~~~~~~~i~~  176 (183)
T 3deo_A          160 GNPMQFGRRIGLEKVIN  176 (183)
T ss_dssp             CSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHcCHHHHHH
Confidence            78999999988877765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=6.5e-26  Score=141.99  Aligned_cols=112  Identities=19%  Similarity=0.120  Sum_probs=103.7

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..|.||||+|+..|+.+++++|++.|.+++.++.                     .|.+|||+|+..++.+++++|++.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~   62 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE---------------------GGRKPLHYAADCGQLEILEFLLLK   62 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT---------------------TSSCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC---------------------CCCcHHHHHHHcCCHHHHHHHHHc
Confidence            56789999999999999999999999999988877                     899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      +.+++..  |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|..
T Consensus        63 g~~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           63 GADINAP--DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9998876  8899999999999999999999999999999999999999999943

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.94  E-value=6.6e-26  Score=160.62  Aligned_cols=177  Identities=21%  Similarity=0.196  Sum_probs=136.4

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCC-----chhhHHhhcc-----CCcccCCCchhHHHHHHhcC
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH-----RTYLHQAVIG-----VNDVSDLSPELLLYRASTVH   77 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~l~~a~~~~   77 (185)
                      .|.++.++++.+...|+..+.+++...-.......+....     ..+.......     ...........+|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            6778999999999999987766654332221111111111     1111111111     11111113346799999999


Q ss_pred             CHHHHHHHHHcCCCCCCC----CCCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q psy6300          78 NLPVMCHALALGASKDWT----NPNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV  150 (185)
Q Consensus        78 ~~~~~~~ll~~~~~~~~~----~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v  150 (185)
                      +.+.+..++..|.+++..    ..+..|.||||+|+..   ++.+++++|++.|++++..|..|.||||+|+..++.+++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v  221 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL  221 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999886532    2367899999999999   899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         151 CLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       151 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++|+++|++++.++..|.|||++|+..|+.++++
T Consensus       222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999998876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=6.1e-28  Score=161.50  Aligned_cols=136  Identities=11%  Similarity=0.041  Sum_probs=118.9

Q ss_pred             CCCCC-CCCchHHHHHHhcCCh----HHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC-
Q psy6300           5 DDVSD-LSPELLLYRASTVHNL----PVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN-   78 (185)
Q Consensus         5 ~~~~~-~~g~~~l~~A~~~g~~----~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-   78 (185)
                      ++..+ ..|.||||+|+..|+.    +++++|++.|++++.++.                     .|.||||+|+..++ 
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~---------------------~g~TpLh~a~~~~~~   88 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK---------------------EGTTLFFPLFQGGGN   88 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT---------------------TCCCTHHHHHHHCTT
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCc
Confidence            44445 6699999999999975    589999999999999887                     99999999999886 


Q ss_pred             -----HHHHHHHHHcCCCCCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300          79 -----LPVMCHALALGASKDWTNPNDDHR-TYLHQAVIGN-----SVMACEYLIL-NGLKINCPDAQGKTPLYLATELGH  146 (185)
Q Consensus        79 -----~~~~~~ll~~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~  146 (185)
                           .+++++|++.|++++.+  |..|. ||||+|+..+     ..+++++|++ .|++++..|..|.||||+|+..++
T Consensus        89 ~~~~~~~iv~~Ll~~Gadin~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A           89 DITGTTELCKIFLEKGADITAL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSSC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred             chhhHHHHHHHHHHCCCCCCcc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence                 57899999999999986  88999 9999999854     3568999999 999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCC
Q psy6300         147 TSQVCLLLKHKADQHIV  163 (185)
Q Consensus       147 ~~~v~~Ll~~g~~~~~~  163 (185)
                      .+++++|.++....+.+
T Consensus       167 ~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          167 PIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999998765444443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=4.3e-26  Score=166.91  Aligned_cols=152  Identities=27%  Similarity=0.344  Sum_probs=118.8

Q ss_pred             CCCCCCCchHHHHHHhc-CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300           6 DVSDLSPELLLYRASTV-HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH   84 (185)
Q Consensus         6 ~~~~~~g~~~l~~A~~~-g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   84 (185)
                      +..+..+.++||.|+.. |+++++++|++.|++++..+...                   .|.+|||+|+..|+.+++++
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~-------------------~g~TpLh~Aa~~g~~~iv~~  253 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQ-------------------DNATPLIQATAANSLLACEF  253 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTT-------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccccc-------------------CCCCHHHHHHHCCCHHHHHH
Confidence            45556678899999999 99999999999999998876211                   88899999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC---CC
Q psy6300          85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD---QH  161 (185)
Q Consensus        85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~---~~  161 (185)
                      |+++|.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.+..   ..
T Consensus       254 LL~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~  331 (368)
T 3jue_A          254 LLQNGANVNQA--DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA  331 (368)
T ss_dssp             HHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------
T ss_pred             HHHcCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            99999999975  88999999999999999999999999999999999999999999999999999999977633   33


Q ss_pred             CCCCCCCcHHHHHHHhC
Q psy6300         162 IVDSSGVEPLTLAVEKA  178 (185)
Q Consensus       162 ~~~~~~~t~l~~A~~~~  178 (185)
                      ..+..+.|+++++....
T Consensus       332 ~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          332 QGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             -----------------
T ss_pred             ccCCCCCCHHHHHHHHH
Confidence            45567788888776543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=6.2e-26  Score=151.50  Aligned_cols=116  Identities=22%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~  143 (185)
                      .|.+|||+|+..|+.++++.|++ +.+++..  |..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            78899999999999999999999 8888875  8899999999999999999999999999999888 889999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV  183 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~  183 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..++.+..
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~  159 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK  159 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCccc
Confidence            9999999999999999999999999999999998876654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=2.3e-26  Score=158.02  Aligned_cols=118  Identities=22%  Similarity=0.164  Sum_probs=112.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~  143 (185)
                      .|.+|||+|+..|+.+++++|++.+.+++..  +..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            6789999999999999999999999998875  78999999999999999999999998 99999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHH
Confidence            99999999999999999999999999999999998887765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.4e-28  Score=180.69  Aligned_cols=148  Identities=11%  Similarity=0.014  Sum_probs=122.5

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300           9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL   88 (185)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   88 (185)
                      +..+.||||.|++.|+.+++++|++.|+.....+.                  .+..+.+|||+|+..|+.+++++|+++
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~------------------~~~~~~tpL~~Aa~~G~~eiv~~Ll~~  150 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV------------------IQAENYQAFRLAAENGHLHVLNRLCEL  150 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--------------------CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH------------------hccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            44577999999999999999999999873221110                  011677899999999999999999999


Q ss_pred             CCCC---CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HhCCHHHHHHHHhCCCCCCC
Q psy6300          89 GASK---DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC--PDAQGKTPLYLAT-ELGHTSQVCLLLKHKADQHI  162 (185)
Q Consensus        89 ~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~--~~~~~~t~l~~A~-~~~~~~~v~~Ll~~g~~~~~  162 (185)
                      |++.   +..   ..+.||||.|+..|+.+++++|++.|++++.  .|..|.||||+|+ ..|+.++|++|++.|++   
T Consensus       151 gad~~~~~i~---~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---  224 (376)
T 2aja_A          151 APTEIMAMIQ---AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---  224 (376)
T ss_dssp             CTTTHHHHHS---HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---
T ss_pred             CCCccccccC---CCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---
Confidence            9752   222   2228999999999999999999999999877  7888999999999 99999999999987742   


Q ss_pred             CCCCCCcHHHHHHHhCCccccc
Q psy6300         163 VDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       163 ~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                          +.||+++|+..|+.++++
T Consensus       225 ----~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          225 ----LAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             ----HHHHHHCTTTTTTTTHHH
T ss_pred             ----cchHHHHHHHCCCHHHHH
Confidence                789999999999999876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=155.23  Aligned_cols=176  Identities=20%  Similarity=0.188  Sum_probs=134.8

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCC-CCCCCCCCc-----hhhHHhhccCC-cccCCCchhHHHHHHhcCCHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKD-WTNPNDDHR-----TYLHQAVIGVN-DVSDLSPELLLYRASTVHNLP   80 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~-~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~   80 (185)
                      .|.+..+.+..+...|+. .++.+.+...... ...+.....     .++........ ........++|+.|+..|+.+
T Consensus        87 lD~w~~~~l~~~~~~GN~-~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~g~~~  165 (301)
T 2b0o_E           87 LDLLGPSELLLALNMGNT-SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLL  165 (301)
T ss_dssp             TSCCCHHHHHHHHHCCHH-HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHTTCHH
T ss_pred             cCCCCHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccCchHHHHhhhhhccCHH
Confidence            455677788888888877 4444455443221 111111111     22222222211 122224567899999999999


Q ss_pred             HHHHHHHcCCCCCCCC----CCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          81 VMCHALALGASKDWTN----PNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        81 ~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      .+..++..+.+++...    .+..|.||||+|+..   ++.+++++|+++|++++..|..|.||||+|+..++.+++++|
T Consensus       166 ~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  245 (301)
T 2b0o_E          166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL  245 (301)
T ss_dssp             HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999988621    267899999999987   899999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         154 LKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++|++++.++..|.|||++|+..++.++++
T Consensus       246 l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~  276 (301)
T 2b0o_E          246 LKGRALVGTVNEAGETALDIARKKHHKECEE  276 (301)
T ss_dssp             HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999998876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=8.1e-25  Score=152.37  Aligned_cols=114  Identities=22%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~  143 (185)
                      .|.||||+|+..|+.++++.|++ +.+++..  +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            78899999999999999999999 8888876  8899999999999999999999999999999988 789999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD  181 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  181 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..++..
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~  158 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTT  158 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence            99999999999999999999999999999999876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=4.7e-24  Score=151.12  Aligned_cols=132  Identities=19%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCHHHHHHHHHc
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNLPVMCHALAL   88 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~   88 (185)
                      ..++|+.|+..|+.+.++.+++.|.++......               ...+..|.||||+|+..   |+.+++++|+++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l---------------~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~  194 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPL---------------ANGHEPDETALHLAVRSVDRTSLHIVDFLVQN  194 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCC---------------SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccc---------------cccccCCCCcchHHHHhcccchHHHHHHHHHC
Confidence            356899999999999999999999986543200               01122899999999999   899999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      |.+++.+  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++.
T Consensus       195 ga~in~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          195 SGNLDKQ--TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CSCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999976  889999999999999999999999999999999999999999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=1.8e-24  Score=158.33  Aligned_cols=120  Identities=51%  Similarity=0.749  Sum_probs=112.9

Q ss_pred             CchhHHHHHHhc-CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTV-HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      .+.++||.|+.. ++.++++.|++.|.+++....+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456799999999 9999999999999999986222789999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  318 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT  318 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=4.6e-24  Score=127.13  Aligned_cols=93  Identities=31%  Similarity=0.341  Sum_probs=85.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      +|.||||+|+..|+.+++++|++.+.+++.+  |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            3679999999999999999999999998876  78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC
Q psy6300         145 GHTSQVCLLLKHKAD  159 (185)
Q Consensus       145 ~~~~~v~~Ll~~g~~  159 (185)
                      ++.+++++|++.|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999875

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.91  E-value=3.5e-23  Score=157.55  Aligned_cols=120  Identities=24%  Similarity=0.251  Sum_probs=110.6

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCCChHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCcH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVI---GNSVMACEYLILNGLKINCPDAQGKTP  137 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~---~~~~~~~~~Ll~~g~~~~~~~~~~~t~  137 (185)
                      ...+.||.|+..|+.+.++.|++.|.+++...    .+..|.||||+||.   .|+.+++++|++.|+++|..|..|.||
T Consensus       131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  210 (497)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred             ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence            34477999999999999999999999987541    25689999999966   899999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         138 LYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       138 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~  257 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE  257 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999998876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=2.5e-24  Score=133.15  Aligned_cols=106  Identities=24%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300          64 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        64 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  143 (185)
                      ..|.+|||+|+..|+.+++++|++.+.+++..  +..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+.
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            38999999999999999999999999998875  7899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPL  171 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  171 (185)
                      .++.+++++|+++|++++.++..+.+|-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999998884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=4.5e-23  Score=122.78  Aligned_cols=93  Identities=23%  Similarity=0.158  Sum_probs=86.7

Q ss_pred             CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300          11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA   90 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~   90 (185)
                      +|.||||+|+..|+.+++++|++.|++++.++.                     .|.||||+|+..|+.+++++|+++|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga   59 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---------------------NGRTPLHLAARNGHLEVVKLLLEAGA   59 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            489999999999999999999999999988877                     89999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK  126 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~  126 (185)
                      +++.+  |..|.||||+|+..|+.+++++|++.|++
T Consensus        60 ~~~~~--d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           60 DVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99876  88999999999999999999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=1.1e-23  Score=130.23  Aligned_cols=109  Identities=17%  Similarity=0.037  Sum_probs=100.3

Q ss_pred             CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300           7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+.                     .|.+|||+|+..++.+++++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~---------------------~g~t~L~~A~~~~~~~~~~~Ll   62 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK---------------------DGNTPLHLAAKNGHAEIVKLLL   62 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS---------------------SSCCTTHHHHTTTCHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCcHHHHHHHH
Confidence            5788999999999999999999999999999888776                     8999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPL  138 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  138 (185)
                      +.|.+++..  +..|.||||+|+..++.+++++|++.|++++..+..+.+|-
T Consensus        63 ~~g~~~~~~--d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           63 AKGADVNAR--SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCCTTCC--CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HcCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999998875  78899999999999999999999999999999998888873

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=2e-24  Score=158.62  Aligned_cols=144  Identities=13%  Similarity=0.092  Sum_probs=115.2

Q ss_pred             chHHHHHHh-cCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          13 ELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        13 ~~~l~~A~~-~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      .+.+++|+. .++.++++++++.|.                            .+.||||+|+..|+.+++++|++.+..
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~----------------------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~  117 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGI----------------------------KSEVICFVAAITGCSSALDTLCLLLTS  117 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTC----------------------------CHHHHHHHHHHHCCHHHHHHHTTC--C
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCC----------------------------CcCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence            345666665 466777777777664                            556999999999999999999998873


Q ss_pred             CCCC-CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC--CCC
Q psy6300          92 KDWT-NPNDDHRTYLHQAVIGNSVMACEYLILNGLKI---NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI--VDS  165 (185)
Q Consensus        92 ~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~  165 (185)
                      .... ..+..+.||||.|+..|+.+++++|++.|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+.
T Consensus       118 ~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~  196 (376)
T 2aja_A          118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA  196 (376)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCC
Confidence            3211 12456889999999999999999999999752   222222 8999999999999999999999999877  788


Q ss_pred             CCCcHHHHHH-HhCCcccccC
Q psy6300         166 SGVEPLTLAV-EKANADIVTL  185 (185)
Q Consensus       166 ~~~t~l~~A~-~~~~~~~~~~  185 (185)
                      .|.|||++|+ ..|+.+++++
T Consensus       197 ~g~TpL~~Aa~~~G~~eiv~~  217 (376)
T 2aja_A          197 ENYYAFRWAAVGRGHHNVINF  217 (376)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHH
Confidence            8999999999 9999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.86  E-value=9e-22  Score=120.72  Aligned_cols=87  Identities=29%  Similarity=0.388  Sum_probs=59.4

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHh
Q psy6300          98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK  177 (185)
Q Consensus        98 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~  177 (185)
                      +.+|.|+||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            45666677777777777777777766666666666667777777777777777777777777666666677777777776


Q ss_pred             CCccccc
Q psy6300         178 ANADIVT  184 (185)
Q Consensus       178 ~~~~~~~  184 (185)
                      |+.++++
T Consensus       101 ~~~~~~~  107 (110)
T 2zgd_A          101 GNEDLAE  107 (110)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            6666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=6.2e-20  Score=112.47  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=83.8

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL  144 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  144 (185)
                      .|.++||+|+..|+.+++++|++.+.+++..  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            8999999999999999999999999998876  78999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHH
Q psy6300         145 GHTSQVCLL  153 (185)
Q Consensus       145 ~~~~~v~~L  153 (185)
                      ++.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
           T LH A     +   + L+  G   N  + + +TPL++A   GHT     LL++KA  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
                  PL  A    + ++V L
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKL 84

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-12
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+  +   ++PV    +  G   D         T LH A    ++   ++L+ +   +N 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
               G +PL+ A + GHT  V LLLK+ A  + V S G  PL +A       +  +
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
           L+ AS + +LP++ + L  GAS + +N      T LH A         +YL+ N  K+N 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
                +TPL+ A  +GHT+ V LLL++ A+ ++  ++G  PL +A
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 18/184 (9%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN--------------DV 61
           L+ AS + +LP++ + L  GAS + +N      T LH A    +              + 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 62  SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
                +  L+ A+ + +  ++   L   A  +         T LH A     V     L+
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNA--NPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
                  C   +G TPL++A + G      LLL+  A  +    +G+ PL +AV   N D
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 182 IVTL 185
           IV L
Sbjct: 180 IVKL 183

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 2/158 (1%)

Query: 26  PVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA 85
           P +                                         L+ A+    + V    
Sbjct: 92  PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

Query: 86  LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
           L   A         +  T LH AV  N++   + L+  G   + P   G TPL++A +  
Sbjct: 152 LERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209

Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
                  LL++    +     GV PL LA ++ +A++V
Sbjct: 210 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 247

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                    + LHQA           L+ NG   N   + G TPL +A  LG+ S   +L
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

Query: 154 ---LKHKADQHIVDSSGVE 169
                  +   + D   + 
Sbjct: 383 KVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           + +  +    L+ A   +NL ++   L  G      +P  +  T LH A   N V     
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+  G   N    QG TPL+LA + GH   V LLL  +A+ ++ + SG+ PL L  ++ +
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276

Query: 180 ADIVTL 185
             +  +
Sbjct: 277 VPVADV 282

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 4e-11
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 42  NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
             +  +RT LH  +I                A+  + L ++   +    ++   +  ++ 
Sbjct: 172 LEDSMNRTILHHIIITSGMTG--------CSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 102 RTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158
            +  +           E L L  +    +N  D+ G T L +A  LG+ S V  LL + A
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 159 DQHIVDSSGVEPLTLAV 175
           D  I + SG+ P+    
Sbjct: 284 DPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCP-DAQGKTPLYLATELGHTSQVCLLLKH 156
              ++   H +         +      L +N P D  G TPL+  T + +   V  L+KH
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129

Query: 157 KADQHIVDS 165
            +++   D+
Sbjct: 130 GSNRLYGDN 138

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 9/173 (5%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
           L+  +++ NL ++ H +  G+  +    ++   + L +AV  VN+    + E LL     
Sbjct: 111 LHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 76  VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK 135
              L    +   L      +            A     ++    +      I     + +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCS----AAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIV---DSSGVEPLTLAVEKANADIVTL 185
           +           S +  L       +++   DS+G   L +A    N  IV  
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 4e-10
 Identities = 27/161 (16%), Positives = 51/161 (31%)

Query: 23  HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM 82
                     A   + +  +P          A   ++  +     L     +        
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 83  CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLAT 142
              L    +          R+ L  AV  NS+   + L+ +G  +N     G + L+ A+
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 143 ELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
             G    V  L++  AD  + +     PL +A  +   DI+
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 99  DDHRTYLHQAVIGNSVMACEYLI----LNGLKINCPDAQGKTPLYLATELGHTSQVC 151
           +D  T LH AV+  ++ A   L+      G +++  +   +TPL+LA      S V 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 20/82 (24%), Positives = 29/82 (35%)

Query: 96  NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
                  T LH A         + LI     +N  D  G TPL+ A   G      +L++
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 156 HKADQHIVDSSGVEPLTLAVEK 177
           +  D   V+  G     +A E 
Sbjct: 254 NLCDMEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                 D      +        A ++L    +        G T L++A   G+T  + LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           ++ + D +I D  G  PL  A      +   +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 26/73 (35%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             D       A           L+  G  IN  +  G T L+ A    +   V  L+++ 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 158 ADQHIVDSSGVEP 170
           A+ +  D+ G  P
Sbjct: 97  ANINQPDNEGWIP 109

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
                   A   G T +V  LL+  AD +  +  G+  L  A    N D+V  
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 77  HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGK 135
               +    L  GA  +     +  +T L  AV    +   + L+    ++IN  D+ GK
Sbjct: 197 DVEAITHLLLDHGADVNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVD 164
           T L LA EL       LL K  A     D
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 15/174 (8%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
              A+    +  +      GA+ +      +             +         L  A+ 
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKED-----------QERLRKGGATALMDAAE 157

Query: 76  VHNLPVMCHALA-LGASKDWTNPNDDHRTYLHQAVIGNSVMA--CEYLILNGLKINCPDA 132
             ++ V+   L  +GA  +  +    +          +S +      L+ +G  +N    
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 133 QGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +GKTPL LA E  H   V  LL+ +  + +  DS G   L LAVE     I  L
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKA 158
           +    L +AV    V   + L+  G  +N  + + G TPL+ A ++     V LLL+H A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 159 DQHIVDSSGVEPLTLAV 175
           D  +   +G  P  LA 
Sbjct: 64  DPVLRKKNGATPFLLAA 80

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDS-SGVEPLTLAVEKANADIV 183
           +    L  A +      V  LL+  A+ +  +   G  PL  AV+ +  DIV
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.2 bits (126), Expect = 2e-09
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 69  LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
           L Y A   +   V       G+  +    ++D +T +  A     +    YLI  G  + 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGS--NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHK 157
             DA   T   LA    H + V +  + +
Sbjct: 249 AVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 93  DWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVC 151
              +     RT LH A   +++   +YL+   G   +  D  GKTP+ LA + G    V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
            L++  A    VD++      LA    + +IV +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK----- 157
             LH    G+  +  E +    + I  P    +T L+         +   L+ H+     
Sbjct: 4   IKLHTEAAGSYAI-TEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 158 ---ADQHIVDSSGVEPL 171
              AD + +D     PL
Sbjct: 62  AAGADVNAMDCDENTPL 78

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 18/67 (26%), Positives = 23/67 (34%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                   RT LH AV   +    E L+  G         G+TPL  A    +     LL
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

Query: 154 LKHKADQ 160
             H A +
Sbjct: 245 RAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 98  NDDHRTYLHQAVIGNSVMACEYLILNG---LKINCPDAQGKTPLYLATELGHTSQVCLLL 154
            +D  T LH AVI       ++L+        ++  +  G+T L+LA  LG  S V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
              A   + +  G   L LA          +
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACV 96

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 37  SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTN 96
               ++P D   TYL Q+     D S          +                   +  N
Sbjct: 99  QPRPSHPRDASDTYLTQSQDCTPDTSHA---PAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 97  PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
            +     ++        ++                  G+TPL+LA E    S + LLLK 
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
            AD       G  PL  A+ + N  +  L
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARL 243

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 14  LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG--------------VN 59
           L++   +    L  +  ++    S   T  + D RT LH A                   
Sbjct: 5   LMVCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 60  DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
           +  D +    L+ A++     ++   L  GA  +  N   +  T LH A   N       
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN--QNGCTPLHYAASKNRHEIAVM 121

Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
           L+  G   +  D    T ++ A   G+   + +LL +KA  +I D+ G  PL LA ++  
Sbjct: 122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 180 ADIVTL 185
            +   L
Sbjct: 182 VEEAKL 187

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 97  PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
            + +  T LH A     V   + L+  G  I   + + KTPL +A   G    +  +++
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 27/93 (29%), Positives = 44/93 (47%)

Query: 93  DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
           D    ++  +T LH A   N+  A   L+++    +  D + +TPL+LA   G       
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           LL + A++ I D     P  +A E+ + DIV L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 6e-07
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 40  WTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPND 99
                +     L  A   +N   +     L + A+  +   V           +    +D
Sbjct: 98  ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL---MHHANRDAQDD 154

Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
              T L  A    S  A + L+ N       D   + P  +A+E  H   V LL
Sbjct: 155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-06
 Identities = 15/67 (22%), Positives = 22/67 (32%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                 + RT LH AV   +      L+  G  +N    QG +P  L      T     L
Sbjct: 138 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 197

Query: 154 LKHKADQ 160
            +   + 
Sbjct: 198 GQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                + H      ++ G   +    + L           G+T L+LA +L +   V LL
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           LK  AD + V   G  P  L   + +  I   
Sbjct: 165 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 196

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 98  NDDHRTYLHQAVIGNSVMACEY---LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
                     A I     A +    L+ +   +    A+      LA E GH   +  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 155 KHKADQHIVDSS--GVEPLTLAVEKANADIVTL 185
           +    + +            LA E  +  ++  
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 179

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 19/177 (10%), Positives = 40/177 (22%), Gaps = 13/177 (7%)

Query: 16  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI--GVNDVSDLSPELLLYRA 73
              A+   +L V+     L  ++       ++      A +  G ++V +   +  +  A
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 74  STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ 133
               +                 N   +       +             L           
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG------VFDLVTKSECLQGFY 278

Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQ-----HIVDSSGVEPLTLAVEKANADIVTL 185
               L    +      +  LL     +       +     E L LA+   N     L
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 16  LYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLY 71
           L  A    ++  +  A A G          N ++   T LH AV                
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV---------------- 53

Query: 72  RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD 131
           R+    +L ++   +      +         T LH   + ++    + L+     I   +
Sbjct: 54  RSVDRTSLHIVDFLVQNSG--NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 111

Query: 132 AQGKTPLYLATELGHTSQVCLLLKHKADQ 160
             G+TPL +A  L H     LL +  + +
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGR 140

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 77  HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGK 135
                      +         +  ++  LH+A    S+   E L   G   +N  D QG 
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 173

Query: 136 TPLYLATELGHTSQVCLLL-KHKADQHIVDSSGVEPLTLAVEKANADI 182
           TPL+ A   GH     LL+ K+ A+  +VD+ G +   +A+ +     
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 105 LHQAVI-GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
           LHQA +        E L      +   D  G+ PL+ +           LL    + +
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 70  LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKIN 128
           L+RA++V +L ++     LG S      +    T L  A+      A   L+   G + +
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 200

Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
             D +G     +A    +       L +  D
Sbjct: 201 LVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
              P+      +H AV         +L      ++  DA+G TPL LA + G    V +L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 154 LKH 156
             H
Sbjct: 153 QGH 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 14/61 (22%), Positives = 22/61 (36%)

Query: 93  DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
           D    +    T LH A   N     E LI  G  ++      KT   ++ + G+     +
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

Query: 153 L 153
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 25/92 (27%), Positives = 37/92 (40%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
                   RT LH A         E L+ +G  +N  D    T L+ ATE  H   V LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
           +K+ AD H           ++++  N D+  +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 10/63 (15%), Positives = 20/63 (31%)

Query: 94  WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
               N+ +      A  G+  +    +      +   + +G T   LA   G    V L+
Sbjct: 93  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

Query: 154 LKH 156
             +
Sbjct: 153 QAN 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.98
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=200.46  Aligned_cols=178  Identities=20%  Similarity=0.161  Sum_probs=154.0

Q ss_pred             CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhH
Q psy6300           3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELL   69 (185)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~   69 (185)
                      ++++.+|..|+||||+|+..|+.++++++++.+............+             +++...+.+.+ ..+..|.||
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tp  106 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTP  106 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCH
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeE-eeCCCCCch
Confidence            4577899999999999999999999999999988776665544333             22233333333 345589999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300          70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ  149 (185)
Q Consensus        70 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  149 (185)
                      ||+|+..|+.+++++|+++|.+++..  +..|.||||.++..+..+++++|...+.+++..|..|.||||+|+..++.++
T Consensus       107 L~~A~~~~~~e~~~~Ll~~g~d~~~~--~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         107 LHYAASKNRHEIAVMLLEGGANPDAK--DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hhHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHH
Confidence            99999999999999999999999876  7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       150 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +++|++.|++++.+|.+|+||||+|. .|+.++++
T Consensus       185 v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~  218 (223)
T d1uoha_         185 AKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILK  218 (223)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHh
Confidence            99999999999999999999999984 57776664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.2e-33  Score=191.74  Aligned_cols=177  Identities=27%  Similarity=0.232  Sum_probs=132.5

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHcCCCCC---CCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALALGASKD---WTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLY   71 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~   71 (185)
                      -+++|.||||+||+.|+.+++++|++.|+++.   .++....++             +.+...+.+.+. .+..|.+|||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-~d~~g~tpL~   83 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALH   83 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-cccccchhhh
Confidence            35667777777777777777777777766643   222322222             112222222222 2338899999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC---------------------------------------------CCCCCCCCChHHH
Q psy6300          72 RASTVHNLPVMCHALALGASKD---------------------------------------------WTNPNDDHRTYLH  106 (185)
Q Consensus        72 ~a~~~~~~~~~~~ll~~~~~~~---------------------------------------------~~~~~~~~~~~l~  106 (185)
                      +|+..++.++++++++......                                             ...++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9999999998888765432211                                             0123667899999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         107 QAVIGNSVMACEYLILNGLKINCP-DAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       107 ~a~~~~~~~~~~~Ll~~g~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      +|+..++.+++++|++.+++.+.. +..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999999888754 5679999999999999999999999999999999999999999999999998763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.3e-33  Score=187.26  Aligned_cols=182  Identities=21%  Similarity=0.163  Sum_probs=154.6

Q ss_pred             CCCCCC-CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc-------------CCcccCCCch
Q psy6300           2 VATDDV-SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG-------------VNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~-~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~   67 (185)
                      |++++. .|.+|.||||+||..|+.+++++|++.|++++.++....++.........             ........+.
T Consensus        12 g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (209)
T d1ot8a_          12 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT   91 (209)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345555 47889999999999999999999999999999887666555332221111             1133333667


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      ++.+.+.........+.+...+.+++..  +..|.|+|+.++..+...+++.++..+.+++..|..|.||||+|+..|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~  169 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINAA--DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY  169 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhhhhhccccccc--CCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHH
Confidence            7888888888888889999999888775  78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      +++++|+++|+|++.++..|+|||++|+..|+.++|++
T Consensus       170 ~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            99999999999999999999999999999999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-32  Score=173.59  Aligned_cols=150  Identities=25%  Similarity=0.199  Sum_probs=137.3

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      ..|||+.|++.|+.+++++|+++|++++ .+.                     .|.||||+|+..++.+.+..+......
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~---------------------~g~t~L~~a~~~~~~~~~~~~~~~~~~   59 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDW---------------------LGTSPLHLAAQYGHFSTTEVLLRAGVS   59 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT---------------------TCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-ccc---------------------CCCcccccccccccccccccccccccc
Confidence            3599999999999999999999998765 344                     889999999999999999999877666


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300          92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL  171 (185)
Q Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  171 (185)
                      ....  +..+.++++.++...+.+++++++..+++.+..+..|.||||+|+..++.+++++|++.|++++.++..|.|||
T Consensus        60 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          60 RDAR--TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             TTCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccc--ccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH
Confidence            6543  56777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcccccC
Q psy6300         172 TLAVEKANADIVTL  185 (185)
Q Consensus       172 ~~A~~~~~~~~~~~  185 (185)
                      ++|+..|+.+++++
T Consensus       138 ~~A~~~g~~eiv~l  151 (153)
T d1awcb_         138 DISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHh
Confidence            99999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6e-32  Score=174.68  Aligned_cols=148  Identities=22%  Similarity=0.202  Sum_probs=139.6

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD   93 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   93 (185)
                      ++||.||..|+++++++|++.|++++.++.                     .|.||||+|+ .++.+++++|++++.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~---------------------~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~   60 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG---------------------FGRTALQVMK-LGNPEIARRLLLRGANPD   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---------------------TSCCHHHHCC-SSCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC---------------------cccccccccc-cccccccccccccccccc
Confidence            899999999999999999999999998877                     9999999886 789999999999999998


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCcHHH
Q psy6300          94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQHIVDSSGVEPLT  172 (185)
Q Consensus        94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~  172 (185)
                      ..  +..+.++++.++..+...+++.|+..+.+++..+..+.+|+|+|+..++.+++++|+++++ +.+.++..|.||||
T Consensus        61 ~~--~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          61 LK--DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             CC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             cc--cccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHH
Confidence            76  7889999999999999999999999999999999999999999999999999999999885 88999999999999


Q ss_pred             HHHHhCCcccccC
Q psy6300         173 LAVEKANADIVTL  185 (185)
Q Consensus       173 ~A~~~~~~~~~~~  185 (185)
                      +|+..++.+++++
T Consensus       139 ~A~~~~~~~iv~~  151 (156)
T d1ihba_         139 LARLYGRNEVVSL  151 (156)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9999999998863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-31  Score=170.74  Aligned_cols=148  Identities=24%  Similarity=0.296  Sum_probs=136.1

Q ss_pred             chHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          13 ELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        13 ~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      ...|+.||..|+.+++++|++. +++++..+.                     .|.+|||+|+ .++.+.+++|++++.+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~---------------------~g~t~L~~A~-~~~~~~v~~Ll~~~~~   60 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNR---------------------FGKTALQVMM-FGSTAIALELLKQGAS   60 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT---------------------TSCCHHHHSC-TTCHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCC---------------------CCCccccccc-cccccccccccccccc
Confidence            4569999999999999998875 678887776                     8999999987 5889999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300          92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL  171 (185)
Q Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  171 (185)
                      ++..  +..|.+|++.++..++.++++++++.|++++..|..|.||||+|+..++.+++++|+ .|++++.++..|+|||
T Consensus        61 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL  137 (156)
T d1bd8a_          61 PNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL  137 (156)
T ss_dssp             TTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHH
T ss_pred             cccc--ccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHH
Confidence            8876  678999999999999999999999999999999999999999999999999999887 7899999999999999


Q ss_pred             HHHHHhCCcccccC
Q psy6300         172 TLAVEKANADIVTL  185 (185)
Q Consensus       172 ~~A~~~~~~~~~~~  185 (185)
                      ++|+..|+.+++++
T Consensus       138 ~~A~~~g~~~iv~~  151 (156)
T d1bd8a_         138 ELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999999863

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-31  Score=193.82  Aligned_cols=181  Identities=25%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------------------------hh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------------------------TY   50 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------------------------~~   50 (185)
                      |++++..+..|.+||+.|+..|+.+++++|+++|++++..+....++                               +.
T Consensus       155 ~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  234 (408)
T d1n11a_         155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  234 (408)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCH
Confidence            56788999999999999999999999999999999887665443332                               11


Q ss_pred             hHHhhcc--------------CCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy6300          51 LHQAVIG--------------VNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMA  116 (185)
Q Consensus        51 ~~~~~~~--------------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (185)
                      ++.....              .....+..|.+|++.+++.++.+++++|+++|.+++..  +..+.||||.++..+..++
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~--~~~~~t~L~~~~~~~~~~~  312 (408)
T d1n11a_         235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT--TRMGYTPLHVASHYGNIKL  312 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--CSSCCCHHHHHHHSSCSHH
T ss_pred             HHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc--cccccccchhhcccCccee
Confidence            1111100              11233447788999999999999999999999998876  6778899999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       117 ~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ++++++.|++++..|..|+||||+|+++|+.++|++|+++|++++.+|.+|.|||++|+..|+.++|+
T Consensus       313 ~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             eeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999886

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.9e-32  Score=186.72  Aligned_cols=122  Identities=24%  Similarity=0.212  Sum_probs=103.8

Q ss_pred             ccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-----------------
Q psy6300          61 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-----------------  123 (185)
Q Consensus        61 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----------------  123 (185)
                      ..+..|.||||+|+..|+.+++++|++.|++++..  |..|.||||+|+..++.+++++|++.                 
T Consensus        40 ~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~--d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  117 (255)
T d1oy3d_          40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (255)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             CcCCCCCCccchHHhhccccccccccccccccccc--ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh
Confidence            44558889999999999999999999999988875  78899999999999999999888654                 


Q ss_pred             ------------------------------CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHHH
Q psy6300         124 ------------------------------GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI-VDSSGVEPLT  172 (185)
Q Consensus       124 ------------------------------g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~l~  172 (185)
                                                    +.+++..+..|.||||+|+..++.+++++|++.+++.+. .+..|.||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~  197 (255)
T d1oy3d_         118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (255)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             hhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccc
Confidence                                          222334466789999999999999999999999988775 4668999999


Q ss_pred             HHHHhCCccccc
Q psy6300         173 LAVEKANADIVT  184 (185)
Q Consensus       173 ~A~~~~~~~~~~  184 (185)
                      +|+..++.++++
T Consensus       198 ~A~~~~~~~~v~  209 (255)
T d1oy3d_         198 LAVEAQAASVLE  209 (255)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             ccccccHHHHHH
Confidence            999999998876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=4.6e-31  Score=184.93  Aligned_cols=184  Identities=21%  Similarity=0.183  Sum_probs=139.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc---------------CCcccCCCc
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG---------------VNDVSDLSP   66 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~   66 (185)
                      |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++....++-........               .....+...
T Consensus        64 Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          64 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            78999999999999999999999999999999999999887654444221111100               001223345


Q ss_pred             hhHHHHHHhcCCH---HHHHHHHHcCCCCCC------CCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCc
Q psy6300          67 ELLLYRASTVHNL---PVMCHALALGASKDW------TNPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKT  136 (185)
Q Consensus        67 ~~~l~~a~~~~~~---~~~~~ll~~~~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t  136 (185)
                      .++.+.+...+..   ..+..+.........      ...+..|.|+||.++..++.+++++++ ..+.+.+..|..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence            5566665555432   223333322211111      112457899999999999999988765 678888999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         137 PLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       137 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      |||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999863

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=182.91  Aligned_cols=162  Identities=22%  Similarity=0.199  Sum_probs=145.3

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.||||+|+..|+.+++++|++.|++++.++.                     .|.+||++++..+..++
T Consensus        29 ~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~---------------------~g~t~l~~~~~~~~~~~   87 (221)
T d1iknd_          29 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF---------------------RGNTPLHLACEQGCLAS   87 (221)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             CCCcccCCCCCCcccccccccccccccccccccccccccccc---------------------ccccccccccccccccc
Confidence            567899999999999999999999999999999999988876                     88999999999999999


Q ss_pred             HHHHHHcCCCCCCC----CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          82 MCHALALGASKDWT----NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        82 ~~~ll~~~~~~~~~----~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      ++.++..+......    .....|.+|+|.|+..++.+++++|+..|..++..+ ..|.||||+|+..|+.+++++|+++
T Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~  167 (221)
T d1iknd_          88 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC  167 (221)
T ss_dssp             HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhc
Confidence            99999876554322    123457899999999999999999999999987765 5699999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         157 KADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       157 g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+|++.++.+|.|||++|+..++.++++
T Consensus       168 gad~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         168 GADVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             TCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999999888765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-30  Score=175.94  Aligned_cols=174  Identities=21%  Similarity=0.142  Sum_probs=144.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-CCCchhhHHhhcc----------------CCcccCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHRTYLHQAVIG----------------VNDVSDL   64 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~   64 (185)
                      +.+++.+|.+|.||||+|+..|+.+++++|++.|++++..+.. ....+.++.....                .....+.
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4578899999999999999999999999999999988754322 2222222111111                1133344


Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~  143 (185)
                      .+.++++.++..++.++++.++..+......  +..|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+.
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhccccccc--CCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc
Confidence            7789999999999999999999999887765  788999999999999999999999887 6789999999999999999


Q ss_pred             hCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHh
Q psy6300         144 LGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEK  177 (185)
Q Consensus       144 ~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~  177 (185)
                      .++.+++++|++ .|++++.++..|.|||++|+..
T Consensus       182 ~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            999999999996 5999999999999999999743

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.7e-30  Score=181.16  Aligned_cols=174  Identities=18%  Similarity=0.120  Sum_probs=128.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchh-------------hHHhhccCCcccCCCchh
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTY-------------LHQAVIGVNDVSDLSPEL   68 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~   68 (185)
                      |++++.+|..|.||||+|+..|+.+++++|+++|.+.........++-.             +...+... ...+..+.+
T Consensus        63 Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~  141 (291)
T d1s70b_          63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDT  141 (291)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCccc-ccccccCcc
Confidence            6778888888888888888888888888888888776655443332211             11111111 222335666


Q ss_pred             HHHHHHhcCCHHHHHHHHHc-CCC------------------------CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc
Q psy6300          69 LLYRASTVHNLPVMCHALAL-GAS------------------------KDWTNPNDDHRTYLHQAVIGNSVMACEYLILN  123 (185)
Q Consensus        69 ~l~~a~~~~~~~~~~~ll~~-~~~------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  123 (185)
                      ++++|+..+..+.+..++.. +.+                        .+....+..|.||||.|+..|+.+++++|++.
T Consensus       142 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  221 (291)
T d1s70b_         142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (291)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             ccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc
Confidence            66666666655555554421 111                        01112356789999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       124 g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      |++++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+.
T Consensus       222 g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999964

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=171.02  Aligned_cols=182  Identities=20%  Similarity=0.123  Sum_probs=153.0

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhH-------------Hhh---ccCCcccCCC
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLH-------------QAV---IGVNDVSDLS   65 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~-------------~~~---~~~~~~~~~~   65 (185)
                      |++++.+|..|.||||+|+..|+.+++++|++.|++.+.............             ...   ..........
T Consensus        30 g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (228)
T d1k1aa_          30 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  109 (228)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccc
Confidence            688999999999999999999999999999999998887766544442211             000   0111333346


Q ss_pred             chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhC
Q psy6300          66 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG  145 (185)
Q Consensus        66 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  145 (185)
                      ...+++.+...........+.....+.... ....+.++++.|+..+...++++++..|...+..|..|.||||+|+..|
T Consensus       110 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         110 GLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             cccccccccccccchhhhhhhccccccccc-cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcC
Confidence            678899998888888888888776665543 3567899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       146 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.+++++|+++|+|++.++.+|.|||++|+..|+.+++|
T Consensus       189 ~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999886

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-28  Score=170.57  Aligned_cols=182  Identities=24%  Similarity=0.199  Sum_probs=142.3

Q ss_pred             CCCCCCCCC-CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------------------------h
Q psy6300           2 VATDDVSDL-SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------------------------T   49 (185)
Q Consensus         2 ~~~~~~~~~-~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------------------------~   49 (185)
                      |++++.++. .|.||||+|+..|+.+++++|++.+............+                               +
T Consensus        28 G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (285)
T d1wdya_          28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCc
Confidence            678887764 69999999999999999999999998776554433222                               1


Q ss_pred             hhHHhhccCC------------------------cccCCCchhHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCChH
Q psy6300          50 YLHQAVIGVN------------------------DVSDLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTY  104 (185)
Q Consensus        50 ~~~~~~~~~~------------------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~  104 (185)
                      .+........                        ......|.+|||+|+..|+.+++++|++. +.+++..  +..+.++
T Consensus       108 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~--~~~~~~~  185 (285)
T d1wdya_         108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNA  185 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC--CTTSCCH
T ss_pred             hhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc--cCCCCcc
Confidence            1111110000                        22233678899999999999999999864 6666654  6777777


Q ss_pred             HHHHHhc----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHhCC
Q psy6300         105 LHQAVIG----NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKAN  179 (185)
Q Consensus       105 l~~a~~~----~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~  179 (185)
                      +..+...    +..+++++|++.|++++.++..|.||||+|+..++.+++++|++. |++++.++.+|.||||+|+..|+
T Consensus       186 ~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            6655432    345689999999999999999999999999999999999999975 89999999999999999999999


Q ss_pred             cccccC
Q psy6300         180 ADIVTL  185 (185)
Q Consensus       180 ~~~~~~  185 (185)
                      .+++++
T Consensus       266 ~eiv~~  271 (285)
T d1wdya_         266 KKIAEL  271 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.9e-28  Score=172.82  Aligned_cols=153  Identities=22%  Similarity=0.257  Sum_probs=136.8

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300          10 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG   89 (185)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~   89 (185)
                      ..+.|+|+.||..|++++|++|++.|++++.++.                     .|.||||+|+..|+.+++++|++++
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~---------------------~G~T~L~~A~~~g~~eiv~~Ll~~~   96 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANV---------------------DGLTALHQACIDDNVDMVKFLVENG   96 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---------------------TCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCC---------------------CCCcHHHHHHhcCCceeeeeecccc
Confidence            3467999999999999999999999999998877                     8899999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC---------------------------------------
Q psy6300          90 ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP---------------------------------------  130 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------------------------------------  130 (185)
                      .+....  +..+.+||+.++..++.+++++|++.|...+..                                       
T Consensus        97 ~~~~~~--~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  174 (291)
T d1s70b_          97 ANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE  174 (291)
T ss_dssp             CCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cccccc--cccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccc
Confidence            887765  677889999999999999999999876554332                                       


Q ss_pred             ---------------------CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         131 ---------------------DAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       131 ---------------------~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                                           +..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~l  250 (291)
T d1s70b_         175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI  250 (291)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHH
Confidence                                 3457899999999999999999999999999999999999999999999998863

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.1e-29  Score=176.50  Aligned_cols=148  Identities=23%  Similarity=0.286  Sum_probs=116.9

Q ss_pred             CCCCCCC-CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCH-
Q psy6300           2 VATDDVS-DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNL-   79 (185)
Q Consensus         2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-   79 (185)
                      ++++|.+ |..|.||||+||..|+.+++++|++.|++++.++.                     .|+||||.|+..++. 
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~---------------------~G~TpL~~A~~~~~~~  154 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---------------------MGESCLVKAVKSVNNY  154 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---------------------TCCCHHHHHHHSSHHH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc---------------------ccccHHHHhhhcccch
Confidence            4567766 89999999999999999999999999999998877                     899999999976642 


Q ss_pred             ------HHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC----HHH--------HHHHHHcCC----------------
Q psy6300          80 ------PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS----VMA--------CEYLILNGL----------------  125 (185)
Q Consensus        80 ------~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~--------~~~Ll~~g~----------------  125 (185)
                            ++++++.+   ....  .|..|+|+||.++..+.    ...        +.+++..+.                
T Consensus       155 ~~~~~~~ll~~l~~---~~~~--~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (301)
T d1sw6a_         155 DSGTFEALLDYLYP---CLIL--EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND  229 (301)
T ss_dssp             HTTCHHHHHHHHGG---GGGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred             hhhhHHHHHHHHhh---hhhh--cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHH
Confidence                  23333322   2222  36789999998775432    222        233333321                


Q ss_pred             ---------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy6300         126 ---------------------KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV  175 (185)
Q Consensus       126 ---------------------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~  175 (185)
                                           .+|..|..|+||||+|++.++.++|++|++.|++++.+|..|.|||++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                                 15778999999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=153.61  Aligned_cols=120  Identities=21%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      +.++||.|+..|+++++++|+++|++++.++.                     .|.+|+|+|+ .|+.+++++|+++|.+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~---------------------~g~t~l~~a~-~g~~~~v~~Ll~~ga~   60 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNS---------------------YGRRPIQVMM-MGSARVAELLLLHGAE   60 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---------------------SSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccc---------------------cccccccccc-cccccccccccccccc
Confidence            45688888888888888888888888877766                     7778887654 5888888888888888


Q ss_pred             CCCCCCCCCCC-hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy6300          92 KDWTNPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK  155 (185)
Q Consensus        92 ~~~~~~~~~~~-~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  155 (185)
                      ++..  +..+. +|||.|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+.
T Consensus        61 ~~~~--~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          61 PNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCC--CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccc--cccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8765  45544 58888888888888888888888888888888888888888888888888763

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.5e-29  Score=155.94  Aligned_cols=108  Identities=30%  Similarity=0.333  Sum_probs=103.5

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300          67 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH  146 (185)
Q Consensus        67 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  146 (185)
                      .+||++|++.|+.+++++|+++|.+++..  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            48999999999999999999999999876  7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300         147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVE  176 (185)
Q Consensus       147 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~  176 (185)
                      .+++++|+++|+|++.++..|.|||++|..
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            999999999999999999999999999843

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=155.10  Aligned_cols=118  Identities=23%  Similarity=0.265  Sum_probs=109.6

Q ss_pred             CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHH
Q psy6300          65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK-TPLYLATE  143 (185)
Q Consensus        65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~~A~~  143 (185)
                      .+.++||+|+..|+.+++++|+++|.+++..  +..|.|++|.| ..|+.+++++|++.|++++..+..+. ||||+|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC--CSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccc--ccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4558899999999999999999999999876  88999999976 47999999999999999999988876 69999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      .|+.+++++|+++|++++.++..|+|||++|+..|+.+++++
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~  120 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY  120 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=161.21  Aligned_cols=169  Identities=21%  Similarity=0.188  Sum_probs=141.2

Q ss_pred             CchHHHHHHhcCChHHHHHHH-HcCCCCCCCCCCCCCchhhHHhhccCC--------------cccCCCchhHHHHHHhc
Q psy6300          12 PELLLYRASTVHNLPVMCHAL-ALGASKDWTNPNDDHRTYLHQAVIGVN--------------DVSDLSPELLLYRASTV   76 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll-~~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~a~~~   76 (185)
                      +.++|+.+|..|+++.++.++ +.+..++.++....++  ++++....+              ......+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~Tp--Lh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTA--LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCH--HHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCH--HHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            467899999999999997755 5556666666654443  433322211              22333667888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        77 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      ++.+++++|++++.+++..  |..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+..+++++|+..
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~--d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAV--NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCceeEee--CCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            8999999999999888875  88899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         157 KADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       157 g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +.+++.++..|+|||++|+..|+.++++
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~  186 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAK  186 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cceeeeccCCCCceeccccccCcHHHHH
Confidence            9999999999999999999999998876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-27  Score=162.54  Aligned_cols=151  Identities=18%  Similarity=0.149  Sum_probs=122.4

Q ss_pred             chHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          13 ELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        13 ~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      .+|||+||+.|+.++++.|++. +..++.++.                     .|.||||+|+..|+.+++++|+++|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~---------------------~G~TpL~~A~~~g~~~iv~~Ll~~ga~   59 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ---------------------DGRIPLHWSVSFQAHEITSFLLSKMEN   59 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHTTCTT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC---------------------CCCCHHHHHHHcCCccccchhhhhhcc
Confidence            4799999999999999998875 456666666                     677777777777777777777777666


Q ss_pred             CCCC------------------------------------CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q psy6300          92 KDWT------------------------------------NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK  135 (185)
Q Consensus        92 ~~~~------------------------------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  135 (185)
                      ++..                                    ..+..+.++++.++..++.+++++|+..|.+.+..+..|.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~  139 (229)
T d1ixva_          60 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ  139 (229)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCC
Confidence            5432                                    1133455666666666778888888888888888899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         136 TPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       136 t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ||||+|+..++.+++++|++.+ .+++.++.+|.||||+|+..|+.++++
T Consensus       140 t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~  189 (229)
T d1ixva_         140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  189 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHH
Confidence            9999999999999999999987 788999999999999999999998876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-27  Score=151.44  Aligned_cols=130  Identities=21%  Similarity=0.169  Sum_probs=120.5

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      +++++..|..|.||||+|+. |+.+++++|++.+.+++....                     .+.+|++.++..++.++
T Consensus        26 ~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDT---------------------SGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred             CCCCCccCCCCCcccccccc-ccccccccccccccccccccc---------------------ccccccccccccccccc
Confidence            57899999999999999874 889999999999999888766                     88899999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH  156 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  156 (185)
                      ++.+++++.+++.+  +..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        84 ~~~~l~~~~~~n~~--~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          84 LKVLVEHGADVNVP--DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccc--cCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999998875  788999999999999999999887 6899999999999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=4.2e-29  Score=153.90  Aligned_cols=107  Identities=21%  Similarity=0.139  Sum_probs=102.0

Q ss_pred             CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300          12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS   91 (185)
Q Consensus        12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   91 (185)
                      ..|||.+|++.|+++++++|++.|++++.++.                     .|.+|||+|+..|+.+++++++++|.+
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~---------------------~g~t~lh~A~~~~~~~~~~~ll~~g~d   60 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE---------------------GGRKPLHYAADCGQLEILEFLLLKGAD   60 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS---------------------SSCCTTHHHHHHSTTTHHHHHHHSSCT
T ss_pred             CChHHHHHHHCCCHHHHHHHHHhhhccccccc---------------------cccccccccccccccccccccccccce
Confidence            36899999999999999999999999988877                     899999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300          92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA  141 (185)
Q Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A  141 (185)
                      ++.+  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|
T Consensus        61 in~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          61 INAP--DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TTCC--SSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             eeec--ccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            9876  88999999999999999999999999999999999999999988

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=149.66  Aligned_cols=132  Identities=17%  Similarity=0.157  Sum_probs=123.2

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++.+|..|.||||+|+ .|+.+++++|+++|++++..+.                     .+.++++.++..+..+.
T Consensus        24 g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~---------------------~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_          24 NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR---------------------TGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred             CCCcCccCCcccccccccc-cccccccccccccccccccccc---------------------cCccccccccccccccc
Confidence            7899999999999999886 7899999999999999988776                     88899999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGL-KINCPDAQGKTPLYLATELGHTSQVCLLLKHK  157 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  157 (185)
                      ++.++..+.+.+..  +..|.++++.|+..++.+++++|++++. +.+.+|..|.||||+|+..++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~--~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999888875  7889999999999999999999998875 78999999999999999999999999999987

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=148.72  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300          67 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH  146 (185)
Q Consensus        67 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  146 (185)
                      .++|+.|+..|+.+++++|+++|.+++.+  |.+|.||||+|+..++.+++++|++.|++++..|..|+||||+|+.+++
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            46899999999999999999999999976  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC-CCCcHHHHH--HHhCCcccccC
Q psy6300         147 TSQVCLLLKHKADQHIVDS-SGVEPLTLA--VEKANADIVTL  185 (185)
Q Consensus       147 ~~~v~~Ll~~g~~~~~~~~-~~~t~l~~A--~~~~~~~~~~~  185 (185)
                      .+++++|+++|++++..+. .++||++++  ..+|+.+++++
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~  121 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  121 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHH
Confidence            9999999999999997764 588888776  56788888763

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=170.36  Aligned_cols=149  Identities=29%  Similarity=0.293  Sum_probs=119.7

Q ss_pred             chHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCC
Q psy6300          13 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASK   92 (185)
Q Consensus        13 ~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~   92 (185)
                      .||||.||..|+.++|++|++.|++++..+.                     .|.||||+|+..|+.+++++|+++|+++
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~---------------------~g~TpL~~A~~~g~~~iv~~Ll~~gadi   59 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNV---------------------KVETPLHMAARAGHTEVAKYLLQNKAKV   59 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS---------------------CCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            3899999999999999999999999988876                     8889999999999999999999999888


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCcHHH
Q psy6300          93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK---------------------------------INCPDAQGKTPLY  139 (185)
Q Consensus        93 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~~~t~l~  139 (185)
                      +..  +..|.||||+|+..|+.+++++|+..+.+                                 .+..+..+.++++
T Consensus        60 ~~~--~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (408)
T d1n11a_          60 NAK--AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH  137 (408)
T ss_dssp             SCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCC--CCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHH
Confidence            875  78888999999888888888877754322                                 2233455667777


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         140 LATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       140 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      .|+..++.+++++|+++|++++..+..+.+||++|+..|+.++++
T Consensus       138 ~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         138 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHH
Confidence            777777777777777777777777777777777777777766654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=6.4e-27  Score=163.67  Aligned_cols=158  Identities=18%  Similarity=0.220  Sum_probs=133.4

Q ss_pred             CCCCC-CCCchHHHHHHhcCChHHHHHH--------HHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHh
Q psy6300           5 DDVSD-LSPELLLYRASTVHNLPVMCHA--------LALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST   75 (185)
Q Consensus         5 ~~~~~-~~g~~~l~~A~~~g~~~~~~~l--------l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   75 (185)
                      ++..+ ..|.||||+||..|+.+++++|        ++.|++++.++.                     .|.||||+|+.
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~---------------------~G~TpLh~A~~   83 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC---------------------DENTPLMLAVL   83 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT---------------------TSCCHHHHHHH
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC---------------------CCCeeeccccc
Confidence            44555 3599999999999999988765        567899988877                     99999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-------------------------------
Q psy6300          76 VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-------------------------------  124 (185)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-------------------------------  124 (185)
                      .|+.+++++|+++|++++..  +.+|.|+++.++..++.+++.++...+                               
T Consensus        84 ~g~~~iv~~Ll~~Gad~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (277)
T d2fo1e1          84 ARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS  161 (277)
T ss_dssp             HTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred             cccccccccccccccccccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccc
Confidence            99999999999999999886  789999999999999998888775431                               


Q ss_pred             ----------------CCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         125 ----------------LKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       125 ----------------~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                                      ...+..+..|.||||+++..++.+++++++ ..+.+.+.++..|.||||+|+..|+.+++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~  239 (277)
T d2fo1e1         162 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  239 (277)
T ss_dssp             HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                            001122446889999999999999998755 6688999999999999999999999998763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.3e-27  Score=146.12  Aligned_cols=121  Identities=18%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             chHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCC
Q psy6300          13 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASK   92 (185)
Q Consensus        13 ~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~   92 (185)
                      -++|+.||..|+++++++|+++|++++.++.                     .|.||||+|+..++.++++++++.+.++
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~---------------------~g~t~Lh~A~~~~~~~~~~~ll~~g~~~   60 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPND---------------------EGITALHNAVCAGHTEIVKFLVQFGVNV   60 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccc---------------------cccccccccccccccccccccccccccc
Confidence            4789999999999999999999999998877                     9999999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHH--HHhCCHHHHHHHHhC
Q psy6300          93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-QGKTPLYLA--TELGHTSQVCLLLKH  156 (185)
Q Consensus        93 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A--~~~~~~~~v~~Ll~~  156 (185)
                      +..  |.+|.||||+|+..|+.+++++|+++|++++..+. .+.||++++  +..|+.+++++|+..
T Consensus        61 ~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          61 NAA--DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccc--cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            876  88999999999999999999999999999997764 477887665  466889999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=160.59  Aligned_cols=151  Identities=21%  Similarity=0.157  Sum_probs=129.4

Q ss_pred             CCchHHHHHHhcCChHH----HHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300          11 SPELLLYRASTVHNLPV----MCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL   86 (185)
Q Consensus        11 ~g~~~l~~A~~~g~~~~----~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   86 (185)
                      +|.||||+|+..|+.++    ++++...|++++.++.                     .|+||||+|+..|+.+++++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~---------------------~g~TpLh~A~~~~~~~iv~~L~   59 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN---------------------LQQTPLHLAVITNQPEIAEALL   59 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT---------------------TCCCHHHHHHHTTCHHHHHCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC---------------------CCCccccccccccccccccccc
Confidence            58999999999999644    5566678888888777                     9999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300          87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN------CPDAQGKTPLYLATELGHTSQVCLLLKHKADQ  160 (185)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  160 (185)
                      +.|.+++..  |..|.+||+.++..+..++++.|+..+....      .....+.||||+|+..++.+++.+|+..|+++
T Consensus        60 ~~g~d~~~~--d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~  137 (221)
T d1iknd_          60 GAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV  137 (221)
T ss_dssp             SCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             ccccccccc--ccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccc
Confidence            999999876  8899999999999999999999999865543      23456889999999999999999999999998


Q ss_pred             CCCC-CCCCcHHHHHHHhCCccccc
Q psy6300         161 HIVD-SSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       161 ~~~~-~~~~t~l~~A~~~~~~~~~~  184 (185)
                      +..+ .+|.||||+|+..|+.++++
T Consensus       138 ~~~~~~~G~T~L~~A~~~g~~~~v~  162 (221)
T d1iknd_         138 NAQEPCNGRTALHLAVDLQNPDLVS  162 (221)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccCCCCccccccccccHHHHH
Confidence            7765 57999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.4e-28  Score=177.66  Aligned_cols=165  Identities=13%  Similarity=0.031  Sum_probs=107.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++++..|..|.||||+||+.|+.+++++|++.|++++..+..                   ..|.||||+|+..|+.++
T Consensus       116 ~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~-------------------~~g~t~L~~Aa~~g~~~i  176 (346)
T d2ajaa1         116 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ-------------------AENYHAFRLAAENGHLHV  176 (346)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS-------------------HHHHHHHHHHHHTTCHHH
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc-------------------cCCCChhHHHHHHhhHHH
Confidence            5667777777777888888888888888877777776544210                   056778888888888888


Q ss_pred             HHHHHHcCCCCCCC-CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC------------------------------
Q psy6300          82 MCHALALGASKDWT-NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP------------------------------  130 (185)
Q Consensus        82 ~~~ll~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~------------------------------  130 (185)
                      +++|++.+.+.... ..+..+.++++.|+..|+.+++++|++.|++++..                              
T Consensus       177 v~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (346)
T d2ajaa1         177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF  256 (346)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHH
Confidence            88888776544211 01223455666677778888888877664332110                              


Q ss_pred             ---CCC----------------CCcHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         131 ---DAQ----------------GKTPLYLATELGHTSQVCLLLKHKAD-----QHIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       131 ---~~~----------------~~t~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                         ...                ..++++.|+..+..+++++|++.+..     .+..+.+|+||||+|++.|+.+++++
T Consensus       257 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~l  335 (346)
T d2ajaa1         257 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL  335 (346)
T ss_dssp             TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHH
T ss_pred             HHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHH
Confidence               000                12456666666777788888776643     23344578999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.6e-25  Score=153.59  Aligned_cols=135  Identities=24%  Similarity=0.147  Sum_probs=115.5

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH---hcC-CHHHH
Q psy6300           8 SDLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS---TVH-NLPVM   82 (185)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~---~~~-~~~~~   82 (185)
                      .+..|.||||+|++.|+.+++++|+++ |++++..+.                     .+.++...+.   ..+ ...++
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~  202 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN---------------------MGRNALIHALLSSDDSDVEAIT  202 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT---------------------TSCCHHHHHHHCSCTTTHHHHH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC---------------------CCCcccccccccccchHHHHHH
Confidence            345689999999999999999999864 778877665                     5555554433   223 34688


Q ss_pred             HHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300          83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH  161 (185)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  161 (185)
                      ++|+++|++++.+  +..|.||||.|+..|+.+++++|+. .|++++..|.+|.||||+|++.++.+++++|+++|+|+|
T Consensus       203 ~~Li~~ga~~n~~--~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         203 HLLLDHGADVNVR--GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHTTCCSSCC--CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHCCCCCCcc--CCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            8999999999875  7889999999999999999999997 589999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy6300         162 IVDS  165 (185)
Q Consensus       162 ~~~~  165 (185)
                      ++|.
T Consensus       281 ~~d~  284 (285)
T d1wdya_         281 CGDL  284 (285)
T ss_dssp             CSSC
T ss_pred             cccC
Confidence            9874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-24  Score=145.40  Aligned_cols=152  Identities=24%  Similarity=0.129  Sum_probs=130.4

Q ss_pred             CCCchHHHHHHhcCChHHHHHHH----HcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300          10 LSPELLLYRASTVHNLPVMCHAL----ALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA   85 (185)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~~~~ll----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   85 (185)
                      .+|.||||+||..|+.++++.|+    +.|++++.++.                     .|.||||+|+..|+.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~---------------------~g~TpL~~A~~~~~~~iv~~L   59 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---------------------LRQTPLHLAVITTLPSVVRLL   59 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---------------------TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC---------------------CCCccceehhccccccccccc
Confidence            36999999999999999998876    48888888777                     999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-------------------------------------CC-C
Q psy6300          86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-------------------------------------LK-I  127 (185)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-------------------------------------~~-~  127 (185)
                      ++++.+.+..  ...+.++++.|...++.++++.+....                                     .+ .
T Consensus        60 l~~ga~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  137 (228)
T d1k1aa_          60 VTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID  137 (228)
T ss_dssp             HHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccc--ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccc
Confidence            9999988875  567888889888888888777665431                                     11 1


Q ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       128 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      ......+.++++.|+..+...+++++++.|.+.+.++..|.|||++|+..|+.++++
T Consensus       138 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  194 (228)
T d1k1aa_         138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  194 (228)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             cccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHH
Confidence            122346889999999999999999999999999999999999999999999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.7e-24  Score=138.69  Aligned_cols=129  Identities=19%  Similarity=0.154  Sum_probs=111.5

Q ss_pred             hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCHHHHHHHHHcCC
Q psy6300          14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNLPVMCHALALGA   90 (185)
Q Consensus        14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~   90 (185)
                      ..|..|++.+++..+..++..|.++..+....               ..+..|.||||+|+..   +..+++++|+++|.
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~---------------~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga   72 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA---------------NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG   72 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCS---------------SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcc---------------cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC
Confidence            35678899999999999999998876543211               1122788999999964   67899999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300          91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD  159 (185)
Q Consensus        91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  159 (185)
                      +++.+  |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.+..
T Consensus        73 din~~--d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          73 NLDKQ--TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             Chhhh--hhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99876  88999999999999999999999999999999999999999999999999999999987654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.9e-25  Score=140.52  Aligned_cols=117  Identities=23%  Similarity=0.244  Sum_probs=104.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYL  140 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  140 (185)
                      ..|+.|++.+++..+..++..|.+.....    .+..|.||||+|+..   +..+++++|++.|++++..|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            34567889999999999998888776432    145689999999964   67899999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300         141 ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT  184 (185)
Q Consensus       141 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  184 (185)
                      |+..++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~  131 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE  131 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999998876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.6e-24  Score=136.79  Aligned_cols=128  Identities=20%  Similarity=0.103  Sum_probs=115.4

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV   81 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~   81 (185)
                      |++.+ .|..|.||||+|+..++.++++.++...........                     .+.++++.++...+.+.
T Consensus        25 ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_          25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK---------------------VDRTPLHMAASEGHANI   82 (153)
T ss_dssp             TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred             CCCcc-cccCCCcccccccccccccccccccccccccccccc---------------------cccccccccccccccee
Confidence            56655 688999999999999999999998887766655444                     66688999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300          82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL  153 (185)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  153 (185)
                      ++++...+.+.+.+  +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|
T Consensus        83 ~~~l~~~~~~~~~~--~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccc--cccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999888875  88999999999999999999999999999999999999999999999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=7e-21  Score=127.60  Aligned_cols=149  Identities=24%  Similarity=0.128  Sum_probs=119.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc--------------hhhHHhhccCCcccCCCch
Q psy6300           2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR--------------TYLHQAVIGVNDVSDLSPE   67 (185)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~   67 (185)
                      |++++.++..+.++++.++..++........................              ..+........ ..+..|.
T Consensus        46 g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~  124 (209)
T d1ot8a_          46 GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGK  124 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc-ccCCCCC
Confidence            67889999999999999999999887776655444332222211111              22222222222 3344888


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300          68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT  147 (185)
Q Consensus        68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  147 (185)
                      ++|++++..+...++..++..+.+++..  |..|.||||.|+..|+.+++++|++.|++++.+|..|+||||+|++.++.
T Consensus       125 t~l~~~~~~~~~~~~~~l~~~~~~~~~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         125 TALHWAAAVNNTEAVNILLMHHANRDAQ--DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CcchhhcccCcceeeeeecccccccccc--ccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999998876  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy6300         148 SQVCLL  153 (185)
Q Consensus       148 ~~v~~L  153 (185)
                      ++|++|
T Consensus       203 ~iv~lL  208 (209)
T d1ot8a_         203 DIVRLL  208 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=1.7e-23  Score=150.78  Aligned_cols=120  Identities=13%  Similarity=0.054  Sum_probs=100.9

Q ss_pred             CCchhHHHHHHhcCCHHHHHH---HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCCcHH
Q psy6300          64 LSPELLLYRASTVHNLPVMCH---ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD--AQGKTPL  138 (185)
Q Consensus        64 ~~~~~~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~~~t~l  138 (185)
                      ..|.++|++|+..|+.+++++   |+..+.+++..  +..|.||||+|+..|+.+++++|++.|++++..+  ..|.|||
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~--~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI--QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            388999999999999887765   67889888875  7889999999999999999999999999998765  4589999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHhCCcccccC
Q psy6300         139 YLATELGHTSQVCLLLKHKADQ---HIVDSSGVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       139 ~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~t~l~~A~~~~~~~~~~~  185 (185)
                      |+|+.+|+.++|++|++.|++.   +..+..+.||++.|+.+|+.+++++
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~  215 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF  215 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHH
Confidence            9999999999999999999765   3334556788889999999998863

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.9e-19  Score=127.19  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC-------HHHHHHHHHcCCCCCCCCCCCC
Q psy6300          63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS-------VMACEYLILNGLKINCPDAQGK  135 (185)
Q Consensus        63 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~Ll~~g~~~~~~~~~~~  135 (185)
                      +..|.||||+|+..|+.+++++|+++|++++.+  |..|+||||.||..++       .++++++.   ..++..|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccC
Confidence            458999999999999999999999999999976  8899999999998664       23455443   34566788899


Q ss_pred             cHHHHHHHhCCH----H--------HHHHHHhCCCC-------------------------------------CCCCCCC
Q psy6300         136 TPLYLATELGHT----S--------QVCLLLKHKAD-------------------------------------QHIVDSS  166 (185)
Q Consensus       136 t~l~~A~~~~~~----~--------~v~~Ll~~g~~-------------------------------------~~~~~~~  166 (185)
                      ||||+++..+..    .        ++.++.+.+..                                     +|.+|..
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            999998865431    2        33344444432                                     5788999


Q ss_pred             CCcHHHHHHHhCCcccccC
Q psy6300         167 GVEPLTLAVEKANADIVTL  185 (185)
Q Consensus       167 ~~t~l~~A~~~~~~~~~~~  185 (185)
                      |+||||+|++.|+.+++++
T Consensus       259 G~TpLh~A~~~g~~~iv~~  277 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDA  277 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHH
Confidence            9999999999999998863