Psyllid ID: psy6307

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37

MQVHWLGAIFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPVELSAPINISDFKKPTLLLVEERELDQDT

cHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEccccccccccccccEEccccccccHHHHHHHHHcccccccccccEEcccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccEEEccccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHccccccc

cccccccEEEcccccccccccccccEEEEEEcccccHcHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEcccccEEEEcccccccccccEEcHHHHHHHHHcccccccccccEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccHcEEEEEEEHccccHHHHccccHHHHEEcccccccccccccccccHEHEcccEEEEEEEcccccHHHHccccccEEEEEEccccccccccccccHccEEEEEHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccEcHHccccccccccccccccccccccccEEEccccccccc

MQVHWLGAIFLSTIFVLneakhsnnwavlVDTSRFWFNYRHVANVLSIYRSVkrlgipdshIILMIAddmacnprnprpatvfnnanqhidvygedvevdyrGYEVTVENFIRLLtgrlppstprskqlltdegSNILIYLTghggdgflkfqdseevTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTghggdgflkfqdseevTSQELGDALEQMWQKRRYHEVFFMIDTCqassmyekfyspnILAMASSLvgedslshhvdpaigvyIIDRYTYYALEFLEDVHLDSAKTMEDFLAvcpkrvcistigirtdlfrrdpkhvpitdffgsirpvelsapinisdfkkptlLLVEERELDQDT

MQVHWLGAIFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRlltgrlppstprskqllTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTigirtdlfrrdpkhvpitdffgsirpvelsapinisdfkkptlllveereldqdt

**VHWLGAIFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRL***********TDEGSNILIYLTGHGGDGFLKFQD********LGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDS**V***ELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPVELSAPINISDFKKPTLLLV*********

*QVHWLGAIFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQK****ELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVG*****HHVDPAIGVYIIDRYTYYALEFLEDV******TMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRP*****************************

***HWLGAIFLSTIFV*****HSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPVELSAPI********T*************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		368	2.2.26 [Sep-21-2011]
Q8T4E1		355	Putative GPI-anchor trans	yes	N/A	0.760	0.788	0.658	1e-126
Q92643		395	GPI-anchor transamidase O	yes	N/A	0.741	0.691	0.628	1e-119
Q5R6L8		395	GPI-anchor transamidase O	yes	N/A	0.741	0.691	0.628	1e-119
Q9CXY9		395	GPI-anchor transamidase O	no	N/A	0.741	0.691	0.625	1e-117
Q4KRV1		395	GPI-anchor transamidase O	yes	N/A	0.747	0.696	0.618	1e-117
Q3MHZ7		395	GPI-anchor transamidase O	yes	N/A	0.747	0.696	0.612	1e-117
P49018		411	GPI-anchor transamidase O	yes	N/A	0.766	0.686	0.520	6e-96
Q9USP5		380	GPI-anchor transamidase O	yes	N/A	0.744	0.721	0.529	8e-92
P49048		319	Putative GPI-anchor trans	yes	N/A	0.722	0.833	0.501	5e-86
O89017		435	Legumain OS=Mus musculus	no	N/A	0.627	0.531	0.268	1e-21

>sp\|Q8T4E1\|GPI8_DROME Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1	Back alignment and function desciption

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/331 (65%), Positives = 250/331 (75%), Gaps = 51/331 (15%)

Query: 20  AKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRP 79
           + H+NNWAVLVD SRFWFNYRHVANVLSIYRSVKRLGIPDS IILMIADDMACN RNPRP
Sbjct: 41  STHTNNWAVLVDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRP 100

Query: 80  ATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILI 139
             V+NNANQHI+VYG+DVEVDYRGYEVTVENF+RLLTGR    T RSK+LL+D GSN+LI
Sbjct: 101 GQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRLLTGRTQNGTARSKKLLSDAGSNVLI 160

Query: 140 YLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGF 199
           YLTGHGGDGFLKFQDSEE+TSQEL D ++QMW+K+RY+EL                    
Sbjct: 161 YLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNEL-------------------- 200

Query: 200 LKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVG 259
                                         FFM+DTCQA+S+YEKF SPN+LA+ASSLVG
Sbjct: 201 ------------------------------FFMVDTCQAASLYEKFTSPNVLAVASSLVG 230

Query: 260 EDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTD 319
           EDSLSHHVDP+IGVY+IDRYTYYALEFLE V   S +T+ +FL VCPKRVCIST+G+R D
Sbjct: 231 EDSLSHHVDPSIGVYMIDRYTYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTVGVRKD 290

Query: 320 LFRRDPKHVPITDFFGSIRPVELSAP-INIS 349
           L+ RDP  VPITDFFG+IRP  +S   IN++
Sbjct: 291 LYPRDPHKVPITDFFGAIRPTRVSTDRINVT 321

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|Q92643\|GPI8_HUMAN GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2	Back alignment and function description

>sp\|Q5R6L8\|GPI8_PONAB GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1	Back alignment and function description

>sp\|Q9CXY9\|GPI8_MOUSE GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2	Back alignment and function description

>sp\|Q4KRV1\|GPI8_PIG GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1	Back alignment and function description

>sp\|Q3MHZ7\|GPI8_BOVIN GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1	Back alignment and function description

>sp\|P49018\|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI8 PE=1 SV=1	Back alignment and function description

>sp\|Q9USP5\|GPI8_SCHPO GPI-anchor transamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi8 PE=2 SV=1	Back alignment and function description

>sp\|P49048\|GPI8_CAEEL Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3	Back alignment and function description

>sp\|O89017\|LGMN_MOUSE Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		368
156551191		340	PREDICTED: putative GPI-anchor transamid	0.817	0.885	0.675	1e-136
242015748		338	gpi-anchor transamidase, putative [Pedic	0.790	0.860	0.701	1e-135
114053053		345	phosphatidylinositol glycan precursor [B	0.779	0.831	0.701	1e-135
380011441		898	PREDICTED: uncharacterized protein LOC10	0.779	0.319	0.702	1e-135
91086227		338	PREDICTED: similar to gpi-anchor transam	0.771	0.840	0.700	1e-135
383859334		478	PREDICTED: putative GPI-anchor transamid	0.785	0.604	0.697	1e-134
332016537		341	Putative GPI-anchor transamidase [Acromy	0.755	0.815	0.716	1e-134
270010243		449	hypothetical protein TcasGA2_TC009622 [T	0.752	0.616	0.715	1e-134
328776630		884	PREDICTED: hypothetical protein LOC41105	0.747	0.311	0.72	1e-134
307185193		899	Putative GPI-anchor transamidase [Campon	0.755	0.309	0.716	1e-134

>gi\|156551191\|ref\|XP_001604758.1\| PREDICTED: putative GPI-anchor transamidase-like [Nasonia vitripennis]	Back alignment and taxonomy information

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 269/361 (74%), Gaps = 60/361 (16%)

Query: 1   MQVHWLGAIFLSTIFVL---------NEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRS 51
           M ++W+  +  + I  +          +  HSNNWAVLVDTSRFWFNYRHVANVLSIYRS
Sbjct: 1   MNLYWIICLLAAQIISVLSFQIPESFGKTGHSNNWAVLVDTSRFWFNYRHVANVLSIYRS 60

Query: 52  VKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENF 111
           VKRLGIPDS IILMIADDMACNPRNPRPATVFNN  QHI+VYG+DVEVDYRGYEVTVENF
Sbjct: 61  VKRLGIPDSQIILMIADDMACNPRNPRPATVFNNIKQHINVYGDDVEVDYRGYEVTVENF 120

Query: 112 IRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMW 171
           +RLLTGRL P TPRSK+LLTDEGSNILIYLTGHGG+GFLKFQDSEE+TSQEL DALEQMW
Sbjct: 121 VRLLTGRLAPETPRSKKLLTDEGSNILIYLTGHGGNGFLKFQDSEEITSQELSDALEQMW 180

Query: 172 QKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFF 231
           QKRRYHE+L                                                  F
Sbjct: 181 QKRRYHEIL--------------------------------------------------F 190

Query: 232 MIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVH 291
           ++DTCQASSMYEKFYSPNILA+ASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLE V 
Sbjct: 191 IVDTCQASSMYEKFYSPNILAVASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLETVE 250

Query: 292 LDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPVELSAP-INISD 350
             S KT+ +FL VCPK  C+ST+G+R DLFRRDPK VP+TDFFGS+RPVEL+   I I D
Sbjct: 251 PSSTKTLSEFLKVCPKHYCLSTVGVREDLFRRDPKTVPVTDFFGSLRPVELTTNIIEIED 310

Query: 351 F 351
           F
Sbjct: 311 F 311

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242015748\|ref\|XP_002428509.1\| gpi-anchor transamidase, putative [Pediculus humanus corporis] gi\|212513143\|gb\|EEB15771.1\| gpi-anchor transamidase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|114053053\|ref\|NP_001040502.1\| phosphatidylinositol glycan precursor [Bombyx mori] gi\|95103156\|gb\|ABF51519.1\| phosphatidylinositol glycan [Bombyx mori]	Back alignment and taxonomy information

>gi\|380011441\|ref\|XP_003689814.1\| PREDICTED: uncharacterized protein LOC100867147 [Apis florea]	Back alignment and taxonomy information

>gi\|91086227\|ref\|XP_972385.1\| PREDICTED: similar to gpi-anchor transamidase [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|383859334\|ref\|XP_003705150.1\| PREDICTED: putative GPI-anchor transamidase-like, partial [Megachile rotundata]	Back alignment and taxonomy information

>gi\|332016537\|gb\|EGI57418.1\| Putative GPI-anchor transamidase [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|270010243\|gb\|EFA06691.1\| hypothetical protein TcasGA2_TC009622 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|328776630\|ref\|XP_394531.3\| PREDICTED: hypothetical protein LOC411058 [Apis mellifera]	Back alignment and taxonomy information

>gi\|307185193\|gb\|EFN71330.1\| Putative GPI-anchor transamidase [Camponotus floridanus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		368
UNIPROTKB\|F1M688		362	Pigk "Protein Pigk" [Rattus no	0.758	0.770	0.614	2.8e-89
UNIPROTKB\|F1M2D7		362	Pigk "Protein Pigk" [Rattus no	0.758	0.770	0.607	2.5e-88
FB\|FBgn0023545		355	CG4406 [Drosophila melanogaste	0.429	0.445	0.829	4.8e-71
UNIPROTKB\|F1NI41		393	PIGK "Uncharacterized protein"	0.432	0.404	0.805	4.8e-71
UNIPROTKB\|A6NEM5		332	PIGK "GPI-anchor transamidase"	0.432	0.478	0.805	6.1e-71
UNIPROTKB\|Q92643		395	PIGK "GPI-anchor transamidase"	0.432	0.402	0.805	6.1e-71
UNIPROTKB\|Q5R6L8		395	PIGK "GPI-anchor transamidase"	0.432	0.402	0.805	6.1e-71
UNIPROTKB\|J9P6N1		396	PIGK "Uncharacterized protein"	0.432	0.401	0.798	4.3e-70
MGI\|MGI:1913863		395	Pigk "phosphatidylinositol gly	0.432	0.402	0.798	5.5e-70
RGD\|1306753		395	Pigk "phosphatidylinositol gly	0.432	0.402	0.798	5.5e-70

UNIPROTKB\|F1M688 Pigk "Protein Pigk" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 175/285 (61%), Positives = 219/285 (76%)

Query:    60 SHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRL 119
             SHI+LM+ADDMACN RNP+PATVF++ N  ++VYG+DVEVDYR YEVTVENF+R+LTGR+
Sbjct:     1 SHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRV 60

Query:   120 PPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEL 179
             PPSTPRSK+LL+D+ SNILIY+TG       +F D    T   L  AL+++    +  +L
Sbjct:    61 PPSTPRSKRLLSDDRSNILIYMTGTPEFRAPRFTD---FTFYFL--ALQRLSDLPKIAQL 115

Query:   180 LTDE-GSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQA 238
                   S I      HGG+GFLKFQDSEE+T+ EL DA EQMWQKRRY+E+ F+IDTCQ 
Sbjct:   116 SVSVLASFITANNLSHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQG 175

Query:   239 SSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTM 298
             +SMYE+FYSPNI+A+ASS VGEDSLSH  DPAIGV+++DRYT+Y LEFLE+++  S   M
Sbjct:   176 ASMYERFYSPNIMALASSQVGEDSLSHQPDPAIGVHLMDRYTFYVLEFLEEINPASQTNM 235

Query:   299 EDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPVELS 343
              D   VCPK +C+ST G RTDLF+RDPK V ITDFFGS+R VE++
Sbjct:   236 NDLFQVCPKSLCVSTPGHRTDLFQRDPKKVLITDFFGSVRKVEIT 280

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB\|F1M2D7 Pigk "Protein Pigk" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0023545 CG4406 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NI41 PIGK "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A6NEM5 PIGK "GPI-anchor transamidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92643 PIGK "GPI-anchor transamidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R6L8 PIGK "GPI-anchor transamidase" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P6N1 PIGK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1913863 Pigk "phosphatidylinositol glycan anchor biosynthesis, class K" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1306753 Pigk "phosphatidylinositol glycan anchor biosynthesis, class K" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49048	GPI8_CAEEL	3, ., -, ., -, ., -	0.5015	0.7228	0.8338	yes	N/A
Q9USP5	GPI8_SCHPO	3, ., -, ., -, ., -	0.5292	0.7445	0.7210	yes	N/A
Q4KRV1	GPI8_PIG	3, ., -, ., -, ., -	0.6184	0.7472	0.6962	yes	N/A
Q5R6L8	GPI8_PONAB	3, ., -, ., -, ., -	0.6284	0.7418	0.6911	yes	N/A
P49018	GPI8_YEAST	3, ., -, ., -, ., -	0.5209	0.7663	0.6861	yes	N/A
Q92643	GPI8_HUMAN	3, ., -, ., -, ., -	0.6284	0.7418	0.6911	yes	N/A
Q3MHZ7	GPI8_BOVIN	3, ., -, ., -, ., -	0.6123	0.7472	0.6962	yes	N/A
Q8T4E1	GPI8_DROME	3, ., -, ., -, ., -	0.6586	0.7608	0.7887	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		368
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	1e-120
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	7e-41

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  353 bits (907), Expect = e-120
 Identities = 162/348 (46%), Positives = 212/348 (60%), Gaps = 51/348 (14%)

Query: 9   IFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIAD 68
           + L  +       ++NNWAVL+ TSRFWFNYRH+ANVL  YR VKRLGIPDS IILM  D
Sbjct: 13  LILLHVLGAAARTNTNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYD 72

Query: 69  DMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQ 128
           D ACN RN  P +VFNN+++  D+YGED E+DY GYEVTVE FIRLLT R   + P+SK+
Sbjct: 73  DQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKR 132

Query: 129 LLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNIL 188
                                                             LLTDE SNI 
Sbjct: 133 --------------------------------------------------LLTDESSNIF 142

Query: 189 IYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSP 248
           IY+TGHGGD FLKFQD+EE+TS++L DA+ Q+  K+RY+E+ FMIDTCQA+++Y+K YSP
Sbjct: 143 IYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSP 202

Query: 249 NILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKR 308
           N+LA+ SS +G+ S SHH D  IGV +IDR+TY+ L+FLE + + S  T++D LA   K 
Sbjct: 203 NVLAVGSSEIGQSSYSHHSDSLIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKE 262

Query: 309 VCISTIGIRTDLFRRDPKHVPITDFFGSIRPVEL-SAPINISDFKKPT 355
              S +G+R  +F R P    ITDFF +++   L     +   F++  
Sbjct: 263 PIHSHVGVRELVFDRRPSDFLITDFFANVQNSALELLKSHYHHFREAI 310

Length = 382

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		368
KOG1349\|consensus		309		100.0
KOG1348\|consensus		477		100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
KOG1348\|consensus		477		99.24
KOG1349\|consensus		309		99.12
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	99.05
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	99.03
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	98.19
KOG1546\|consensus		362		97.27
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.9
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	96.84

>KOG1349\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.4e-89  Score=638.34  Aligned_cols=281  Identities=71%  Similarity=1.184  Sum_probs=267.1

Q ss_pred             CCCCcEEEEEeCCCCCCCcchhhhHHHHHHHHHhCCCCCCCEEEEecCCCCCCCCCCCCCeeeeCCCCCCCccCCCcccc
Q psy6307          21 KHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVD  100 (368)
Q Consensus        21 ~~~~~wAVlvagS~~w~NYRHqadv~~~Y~~L~~~Gi~d~~Ii~m~~DDia~n~~Np~pG~i~n~~~~~~nvy~~~v~iD  100 (368)
                      .|++||||||++||+||||||.|||+.+|+.+||+||||+|||+|++||+|||+|||+||+||++.+++.|+||+.|++|
T Consensus        25 ~htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevd  104 (309)
T KOG1349|consen   25 GHTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVD  104 (309)
T ss_pred             hccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceee
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHcCCCCCCCCCCcccccCCCccEEEEecCCCCCCccccCCCcccCHHHHHHHHHHHhhhccccccc
Q psy6307         101 YRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELL  180 (368)
Q Consensus       101 Y~g~~vt~enfl~vL~G~~~~~~p~~k~l~s~~~d~vfiy~tgHG~~g~i~~~~~~~vt~~~f~~~L~~~~~~~~yk~L~  180 (368)
                      |||++||+|||+++|||+.++.+|++|||++++++|||||+|||||+||+||||.+++|.+                   
T Consensus       105 yrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd~FlKFqd~eelts~-------------------  165 (309)
T KOG1349|consen  105 YRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGDGFLKFQDAEELTSD-------------------  165 (309)
T ss_pred             cccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCccceecccHHHhhhH-------------------
Confidence            9999999999999999999999999999999999999999999999999999998776665                   


Q ss_pred             cCCCceEEEEEeecCCCCccccCCCCCCCHHHHHHHHHHHHHhcccceEEEEeecccccccccccCCCcEEEEEecCCCC
Q psy6307         181 TDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGE  260 (368)
Q Consensus       181 ~~~~d~vFvY~s~HGg~~~~~~~~~~~l~~~dL~~~L~~M~~k~~y~~lv~iidAC~SGSm~~~l~~~nV~~itAS~~~E  260 (368)
                                                     ||++++++|++++||++++|++|+|||.||++++.+|||++++||..+|
T Consensus       166 -------------------------------dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~~ge  214 (309)
T KOG1349|consen  166 -------------------------------DLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSLVGE  214 (309)
T ss_pred             -------------------------------HHHHHHHHHHHhhhhceEEEEeeccchHHHHHhhcCCCeEEEeecccCC
Confidence                                           9999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcceeeccchHHHHHHHhcccCCChhhHHHHHhhccCcccccCceeeccCCCCCCCCccccccccCCcce
Q psy6307         261 DSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRDPKHVPITDFFGSIRPV  340 (368)
Q Consensus       261 sSys~~~d~~ig~~l~D~FTy~~~~~le~~~~~~~~Tl~~lf~~v~~~~~~S~~~~~~~~~~~~~~~~~~~dF~g~~~~~  340 (368)
                      +|||++.|+.||++++|+||||.++||++.......||+++|+.+.++.++||++.++|+|.+++++++++||||+++..
T Consensus       215 ~SySh~~d~~Igv~vIDrftyy~l~flek~~~~~~~~l~dl~~s~~~~~~~St~gvr~dl~~r~~~~v~itDFFg~vr~~  294 (309)
T KOG1349|consen  215 PSYSHHSDSDIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDLFDSCPKRLLGSTPGVRTDLYQRDPKDVLITDFFGSVRIE  294 (309)
T ss_pred             cccccCCCcccceeeeccchHHHHHHHHhcccchhhhHHHHHHhCChhhhcCCcCcccccccCCcccceeeeecccceeE
Confidence            99999999999999999999999999999644455599999999999999999999999999999999999999999955


Q ss_pred             eecC-CccccCC
Q psy6307         341 ELSA-PINISDF  351 (368)
Q Consensus       341 ~~~~-~~~~~~~  351 (368)
                      .++. ++++..+
T Consensus       295 ~~~~~~~~~~~~  306 (309)
T KOG1349|consen  295 LHTSEEIKLDDE  306 (309)
T ss_pred             eccchhhcccCc
Confidence            5544 5665553

>KOG1348\|consensus	Back alignment and domain information

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1348\|consensus	Back alignment and domain information

>KOG1349\|consensus	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1546\|consensus	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		368
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 59/373 (15%), Positives = 117/373 (31%), Gaps = 111/373 (29%)

Query: 2   QVHWLGAIFLST----IFVLNEAKH--SNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRL 55
           ++ WL     ++    + +L +  +    NW    D S    N +   +  SI   ++RL
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIH--SIQAELRRL 237

Query: 56  ----GIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENF 111
                  +  ++L    ++    +N +    FN + +        + +  R  +VT  +F
Sbjct: 238 LKSKPYENCLLVL---LNV----QNAKAWNAFNLSCK--------ILLTTRFKQVT--DF 280

Query: 112 IRLLTGRLPPSTPRSKQLLTDEGSNILI-YLTGHGGDGFLKFQD-SEEVTSQE------L 163
           +   T         S  L  DE  ++L+ YL         + QD   EV +        +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-------CRPQDLPREVLTTNPRRLSII 333

Query: 164 GDALEQM---WQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTS--QELG---- 214
            +++      W    +  +  D+ + I+        +  L   +  E       L     
Sbjct: 334 AESIRDGLATWD--NWKHVNCDKLTTII--------ESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 215 ------DALEQMWQKRRYHEVFFMIDTCQASSMYEK-----FYS------------PNIL 251
                   L  +W      +V  +++     S+ EK       S             N  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 252 AMASSLVGEDSLSHHVDP-AIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVC 310
           A+  S+V   ++    D   +    +D+Y Y  +      HL + +  E           
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERM--------- 490

Query: 311 ISTIGIRTDLFRR 323
                    LFR 
Sbjct: 491 --------TLFRM 495

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		368
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.38
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	99.32
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	99.12
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.48
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	95.55
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	95.44
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	95.25
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	95.24
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	95.14
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	95.04
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	95.02
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	94.96
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	94.95
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	94.78
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	94.07
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	93.95
1pyo_A		167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	89.24
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	89.05
3h11_A		272	CAsp8 and FADD-like apoptosis regulator; cell deat	88.58
1qtn_A		164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	88.22
2dko_A		146	Caspase-3; low barrier hydrogen bond, caspase, dru	82.21

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.38  E-value=1.5e-12  Score=124.80  Aligned_cols=188  Identities=16%  Similarity=0.210  Sum_probs=123.2

Q ss_pred             CCcEEEEEeCCCC-------CCC-cc-hhhhHHHHHHHHHhCCCCCCCEEEEecCCCCCCCCCCCCCeeeeCCCCCCCcc
Q psy6307          23 SNNWAVLVDTSRF-------WFN-YR-HVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVY   93 (368)
Q Consensus        23 ~~~wAVlvagS~~-------w~N-YR-Hqadv~~~Y~~L~~~Gi~d~~Ii~m~~DDia~n~~Np~pG~i~n~~~~~~nvy   93 (368)
                      .++||+||.-+++       |.. -+ =..|+..|.+.|++.|++   |++++-++                        
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~---v~~l~~~~------------------------   54 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFA---VTTLMTKA------------------------   54 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCE---EEEEEGGG------------------------
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCc---eEEecCCc------------------------
Confidence            4679999998763       211 11 146999999999999996   66554221                        


Q ss_pred             CCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCcccccCCCccEEEEecCCCCCCccccCCCcccCHHHHHHHHHHHhhh
Q psy6307          94 GEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQK  173 (368)
Q Consensus        94 ~~~v~iDY~g~~vt~enfl~vL~G~~~~~~p~~k~l~s~~~d~vfiy~tgHG~~g~i~~~~~~~vt~~~f~~~L~~~~~~  173 (368)
                                  .|.+|+++.|..-.       +  ...++|.+|+||+|||...  .-.+|++                
T Consensus        55 ------------~t~~~i~~al~~l~-------~--~~~~~D~~~~yfSGHG~~~--~~~~g~e----------------   95 (285)
T 3bij_A           55 ------------ATRAKVIDAIGKAA-------K--ALGKGDIFMLSYSGHGGQV--PDTSNDE----------------   95 (285)
T ss_dssp             ------------CCHHHHHHHHHHHH-------H--HCCTTCEEEEEEESCEEEE--ECTTSCC----------------
T ss_pred             ------------cCHHHHHHHHHHHH-------H--hCCCCCEEEEEEcCCcccc--cCCCCCc----------------
Confidence                        46677776664211       1  1256799999999999731  0011110                


Q ss_pred             ccccccccCCCceEEEEEeecCCCCccccCCCCCCCHHHHHHHHHHHHHhcccceEEEEeeccccccccccc--------
Q psy6307         174 RRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKF--------  245 (368)
Q Consensus       174 ~~yk~L~~~~~d~vFvY~s~HGg~~~~~~~~~~~l~~~dL~~~L~~M~~k~~y~~lv~iidAC~SGSm~~~l--------  245 (368)
                                .|         |-++++...+. .+..++|.+.|+.|   ..-+++++|+|||+||++.+.+        
T Consensus        96 ----------~d---------g~~~~l~p~D~-~i~~~~l~~~l~~l---~~~~~~~vilD~C~SG~~~~~~p~~~~~~~  152 (285)
T 3bij_A           96 ----------PD---------GVDETWCLFDG-ELIDDELYALLGKF---AAGVRVLVFSDSCHSGTVVKMAYYNGTTAA  152 (285)
T ss_dssp             ----------TT---------CEEEEEECSSS-EEEHHHHHHHHTTS---CSSCEEEEEEECCCCCCHHHHHHTTC----
T ss_pred             ----------cC---------CCcceEEecCC-CccHHHHHHHHHhc---cCCCeEEEEEecCCCCcccccccccccccc
Confidence                      00         11122222222 35567888877655   2357899999999999887620        


Q ss_pred             ---------------------------------------------CCCcEEEEEecCCCCcccCCCCCCCCcceeeccch
Q psy6307         246 ---------------------------------------------YSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYT  280 (368)
Q Consensus       246 ---------------------------------------------~~~nV~~itAS~~~EsSys~~~d~~ig~~l~D~FT  280 (368)
                                                                   .+.++++++|+.++|.|+...        ..+.||
T Consensus       153 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~--------~~G~FT  224 (285)
T 3bij_A          153 RSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA--------FNGAFT  224 (285)
T ss_dssp             ---------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS--------SSCHHH
T ss_pred             ccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc--------cCCHHH
Confidence                                                         123688999999999998521        246899


Q ss_pred             HHHHHHHhcccCCChhhHHHHHhhccCcc
Q psy6307         281 YYALEFLEDVHLDSAKTMEDFLAVCPKRV  309 (368)
Q Consensus       281 y~~~~~le~~~~~~~~Tl~~lf~~v~~~~  309 (368)
                      +++++-|+..  ....|+.++++++++.+
T Consensus       225 ~aLl~~L~~~--~~~~s~~~l~~~v~~~~  251 (285)
T 3bij_A          225 GQLLRVWKNG--LYKGSYRSFHKAIVRRM  251 (285)
T ss_dssp             HHHHHHHGGG--TCCSCHHHHHHHHHHHS
T ss_pred             HHHHHHHhhC--CCCcCHHHHHHHHHHhc
Confidence            9999988763  34679999999997654

PyMOL of 3bij

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A	Back alignment and structure

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*	Back alignment and structure

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		368
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	98.02
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	97.61
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	97.61
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	97.55
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	96.96
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	96.85

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5e-06  Score=75.45  Aligned_cols=141  Identities=15%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             ccCHHHHHHHHHHHhhhccccccccCCCceEEEEEeecCCCC-------ccccCCCCCCCHHHHHHHHHHH-HHhcccce
Q psy6307         157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDG-------FLKFQDSEEVTSQELGDALEQM-WQKRRYHE  228 (368)
Q Consensus       157 ~vt~~~f~~~L~~~~~~~~yk~L~~~~~d~vFvY~s~HGg~~-------~~~~~~~~~l~~~dL~~~L~~M-~~k~~y~~  228 (368)
                      .++.+++.++|+......      ..+.|.+++||+|||...       .+...+...+.-+++...+... ...-+-+.
T Consensus        67 nlt~~~~~~~l~~~~~~~------~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kp  140 (277)
T d1nw9b_          67 DLTAKKMVLALLELARQD------HGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKP  140 (277)
T ss_dssp             SCCHHHHHHHHHHHHHSC------CTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSC
T ss_pred             CCCHHHHHHHHHHhhhhc------ccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcccCc
Confidence            356777777765542211      256799999999999652       2223444455555555444211 11233456


Q ss_pred             EEEEeeccccccccccc---------------------------------------C-CCcEEEEEecCCCCcccCCCCC
Q psy6307         229 VFFMIDTCQASSMYEKF---------------------------------------Y-SPNILAMASSLVGEDSLSHHVD  268 (368)
Q Consensus       229 lv~iidAC~SGSm~~~l---------------------------------------~-~~nV~~itAS~~~EsSys~~~d  268 (368)
                      .+|++|||+++.+-...                                       . ..++++.-|+.++..|+.   +
T Consensus       141 ki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~---~  217 (277)
T d1nw9b_         141 KLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWR---D  217 (277)
T ss_dssp             EEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTT---C
T ss_pred             EEEEEecccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccceEEec---C
Confidence            78999999988653321                                       1 136777777777777763   2


Q ss_pred             CCCcceeeccchHHHHHHHhcccCCChhhHHHHHhhccCccccc
Q psy6307         269 PAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCIS  312 (368)
Q Consensus       269 ~~ig~~l~D~FTy~~~~~le~~~~~~~~Tl~~lf~~v~~~~~~S  312 (368)
                      +..    +..|++.+++.|++.  ....+|.+++..|+.+|...
T Consensus       218 ~~~----gS~f~~~L~~~l~~~--~~~~~l~~il~~V~~~V~~~  255 (277)
T d1nw9b_         218 PKS----GSWYVETLDDIFEQW--AHSEDLQSLLLRVANAVSVK  255 (277)
T ss_dssp             TTS----CBHHHHHHHHHHHHH--TTTSCHHHHHHHHHHHHHTT
T ss_pred             CCC----CCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHh
Confidence            222    357999999988863  35568999999998887544

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=96.96  E-value=0.00044  Score=62.31  Aligned_cols=143  Identities=15%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             ccCHHHHHHHHHHHhhhccccccccCCCceEEEEEeecCCCCccccCCCCCCCHHHHHHHHHHHHH-hcccceEEEEeec
Q psy6307         157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQ-KRRYHEVFFMIDT  235 (368)
Q Consensus       157 ~vt~~~f~~~L~~~~~~~~yk~L~~~~~d~vFvY~s~HGg~~~~~~~~~~~l~~~dL~~~L~~M~~-k~~y~~lv~iidA  235 (368)
                      .++.+++.++|+...+.      .-.+.|.+++|++|||+.+++.-.|.. +..+++...+..... .-+-|-.||+++|
T Consensus        66 nlt~~~m~~~l~~~~~~------~~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPKif~lqA  138 (256)
T d1m72a_          66 NLKSEEINKFIQQTAEM------DHSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLFFIQA  138 (256)
T ss_dssp             SCCHHHHHHHHHHHHTS------CCTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCEEEEEES
T ss_pred             CCCHHHHHHHHHHHhhh------hccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhhhhhHHHcCCcEEEEEec
Confidence            46777888877654321      123458899999999999988776663 444444443321110 0111235899999


Q ss_pred             ccccccccccC------------------CCcEEEEEecCCCCcccCCCCCCCCcceeeccchHHHHHHHhcccCCChhh
Q psy6307         236 CQASSMYEKFY------------------SPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKT  297 (368)
Q Consensus       236 C~SGSm~~~l~------------------~~nV~~itAS~~~EsSys~~~d~~ig~~l~D~FTy~~~~~le~~~~~~~~T  297 (368)
                      |..+.+-....                  ..++++.-|+.++..||..   +..    +..|+-.+++.|+.  ......
T Consensus       139 CRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~---~~~----gS~fi~~L~~~l~~--~~~~~~  209 (256)
T d1m72a_         139 CQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRN---TTR----GSWFMQALCEELRY--AGTERD  209 (256)
T ss_dssp             CSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEE---TTT----EEHHHHHHHHHHHH--HTTTSC
T ss_pred             CcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccC---CCC----CCHHHHHHHHHHHH--hCCCCC
Confidence            99754322210                  1267777777777777742   222    23555556666654  245678


Q ss_pred             HHHHHhhccCcccccCce
Q psy6307         298 MEDFLAVCPKRVCISTIG  315 (368)
Q Consensus       298 l~~lf~~v~~~~~~S~~~  315 (368)
                      |.+++..|+.+|.....+
T Consensus       210 l~~il~~V~~~V~~~~~~  227 (256)
T d1m72a_         210 ILTLLTFVCQKVALDFES  227 (256)
T ss_dssp             HHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999888665443

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00064  Score=60.52  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             ccCHHHHHHHHHHHhhhccccccccCCCceEEEEEeecCCCCccccCCCCCCCHHHHHHHHHHHHHh-cccceEEEEeec
Q psy6307         157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQK-RRYHEVFFMIDT  235 (368)
Q Consensus       157 ~vt~~~f~~~L~~~~~~~~yk~L~~~~~d~vFvY~s~HGg~~~~~~~~~~~l~~~dL~~~L~~M~~k-~~y~~lv~iidA  235 (368)
                      .++.++..++|+...+..      -...|.+++|++|||..+.+.-.+. .+.-+++...+....-. -+-|-.+|+++|
T Consensus        56 nl~~~em~~~l~~~~~~~------~~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~kpKif~iqa  128 (245)
T d1f1ja_          56 DCSCAKMQDLLKKASEED------HTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLFFIQA  128 (245)
T ss_dssp             SCCHHHHHHHHHHHHHSC------GGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEEEEES
T ss_pred             CCCHHHHHHHHHHHHHHh------ccCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhcchhhehhh
Confidence            467788888877654321      1345888999999999987665554 35555555544321101 111235889999


Q ss_pred             ccccccccccC-------------------CCcEEEEEecCCCCcccCCCCCCCCcceeeccchHHHHHHHhcccCCChh
Q psy6307         236 CQASSMYEKFY-------------------SPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAK  296 (368)
Q Consensus       236 C~SGSm~~~l~-------------------~~nV~~itAS~~~EsSys~~~d~~ig~~l~D~FTy~~~~~le~~~~~~~~  296 (368)
                      |.++.+-..+.                   ..++++.-|+.++..||..   +..    +..|.-.+++.|++.  ....
T Consensus       129 Crg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~---~~~----gS~fi~~L~~~l~~~--~~~~  199 (245)
T d1f1ja_         129 CRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRS---PGR----GSWFVQALCSILEEH--GKDL  199 (245)
T ss_dssp             CCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEE---TTT----EEHHHHHHHHHHHHH--TTTS
T ss_pred             hcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccC---CCC----CCHHHHHHHHHHHHh--CCCC
Confidence            99876533211                   1256677777777666632   222    345666666666652  4566


Q ss_pred             hHHHHHhhccCcccccCcee
Q psy6307         297 TMEDFLAVCPKRVCISTIGI  316 (368)
Q Consensus       297 Tl~~lf~~v~~~~~~S~~~~  316 (368)
                      .|.+++..|+.+|.......
T Consensus       200 ~l~~il~~V~~~V~~~~~~~  219 (245)
T d1f1ja_         200 EIMQILTRVNDRVARHFESQ  219 (245)
T ss_dssp             CHHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHhhcc
Confidence            89999999998886554443

PyMOL of d1f1ja_