Psyllid ID: psy633

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccEEEEEEcHHHHHHccccccccEcccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccccccccHHcccccccccccccEEHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mnasvmfdkntglskgfgfvtfqnkeavdkvfstdshvlegsrlsiqpsdshnsqvKKKIETKETASFSRMAENMEDRFNQACDYLPslvkkldsstlLKFYALYKQAtvgqcnidkpswynmeaKSKYNAWNSLGQMAKSEAMSKYIALLNEVdagwedkeqeeinwdesqesgskenegqtkgwVNVSSMindesqlddnEKNIYEWAKEGKLDMLVKQLTKLKdfninqldenglnclhwacdrgHLKVVQHLIEKCgadvnvtdsdgdyglDYAKAIEHTDLIEYLVNsgahssnt
Flexible Loop (DISEMBL)
mnasvmfdkntglskgfGFVTFQNKEAVDKVFSTDSHVLegsrlsiqpsdshnsqvkkkietkeTASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEInwdesqesgskenegqtkgwVNVSSMindesqlddNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVnsgahssnt
Low Complexity Region (SEG)
MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT
Disordered region (IsUnstruct)
***********GLSKGFGFVTFQNKEAVDKVF**********************************************FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGW**********************************************NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN********
Disordered Region (DISOPRED)
**ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD*****************FSRM*ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH****
Disordered Region (DISEMBL)
MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI**************ETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQ*******************TKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT
Disordered Region (DISPRO)
*NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ**************************NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDK**********************KGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q5RJK8	282	Acyl-CoA-binding domain-c	yes	N/A	0.726	0.773	0.367	5e-36
Q9BR61	282	Acyl-CoA-binding domain-c	yes	N/A	0.753	0.801	0.349	1e-35
A2VDR2	282	Acyl-CoA-binding domain-c	yes	N/A	0.703	0.748	0.361	4e-35
Q9D061	282	Acyl-CoA-binding domain-c	yes	N/A	0.693	0.737	0.358	5e-33
Q4V8X4	300	Acyl-CoA-binding domain-c	yes	N/A	0.706	0.706	0.328	5e-31
Q66JD7	286	Acyl-CoA-binding domain-c	yes	N/A	0.723	0.758	0.314	3e-28
Q4V869	286	Acyl-CoA-binding domain-c	N/A	N/A	0.723	0.758	0.314	5e-28
Q9SM23	338	Acyl-CoA-binding domain-c	yes	N/A	0.64	0.568	0.354	4e-25
Q9STP8	354	Acyl-CoA-binding domain-c	no	N/A	0.66	0.559	0.328	2e-24
Q54GC8	288	Acyl-CoA-binding domain-c	yes	N/A	0.713	0.743	0.293	1e-20

>sp|Q5RJK8|ACBD6_RAT Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 19/237 (8%)

Query: 60  IETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPS 119
            +T E  +   +AE     F +A  ++  LV+      LL  YA YKQ  VG CNI KP+
Sbjct: 31  FQTPEAEATRSLAE----LFEKAAAHVQGLVQVASREQLLYLYARYKQVKVGNCNIPKPN 86

Query: 120 WYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN 179
           +++ E K K+ AW +LG  + S+AM +YIA + ++D GW             Q S  K  
Sbjct: 87  FFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW-----------NPQVSEKKGK 135

Query: 180 EGQTK-GWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGL 238
           EG +  G   VSS+ ++E+ + + +KNI+++ +E  +D + K + K K  ++N  DE G 
Sbjct: 136 EGSSGFGGPVVSSLYHEET-IREEDKNIFDYCRENNIDHITKAI-KSKTVDVNMTDEEGR 193

Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             LHWACDRGH ++V+ L++ C A +N  D++G   L YA A E +D++E L+ SGA
Sbjct: 194 ALLHWACDRGHKELVKVLLQ-CEAGINCQDNEGQTALHYAAACEFSDIVELLLQSGA 249

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.
Rattus norvegicus (taxid: 10116)

>sp|Q9BR61|ACBD6_HUMAN Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 20/246 (8%)

Query: 50  DSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQAT 109
           DS   +     E +ET+  + +       F +A  +L  L++      LL  YA YKQ  
Sbjct: 24  DSGEVEFPHSPEIEETSCLAEL-------FEKAAAHLQGLIQVASREQLLYLYARYKQVK 76

Query: 110 VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWD 169
           VG CN  KPS+++ E K K+ AW +LG  + S+AM +YIA++ ++D GW        N  
Sbjct: 77  VGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW--------NPQ 128

Query: 170 ESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN 229
             ++ G + N G   G   +SS+ ++E+ + + +KNI+++ +E  +D + K + K K+ +
Sbjct: 129 IPEKKGKEANTG--FGGPVISSLYHEET-IREEDKNIFDYCRENNIDHITKAI-KSKNVD 184

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 289
           +N  DE G   LHWACDRGH ++V  L++   AD+N  D++G   L YA A E  D++E 
Sbjct: 185 VNVKDEEGRALLHWACDRGHKELVTVLLQH-RADINCQDNEGQTALHYASACEFLDIVEL 243

Query: 290 LVNSGA 295
           L+ SGA
Sbjct: 244 LLQSGA 249

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Homo sapiens (taxid: 9606)

>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 13/224 (5%)

Query: 72  AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           + ++ + F +A ++L  LV+      LL  YA YKQ  VG CN  KPS+++ E K K+ A
Sbjct: 39  SRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEA 98

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS 191
           W +LG  + S+AM +YIA++ ++D  W        N    ++ G + N G   G   VSS
Sbjct: 99  WKALGDSSPSQAMQEYIAVVKKLDPSW--------NPQSPEKKGKEANTG--FGGPVVSS 148

Query: 192 MINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251
           + ++E  + + +K+I+++ +E  +D + K + K K+ ++N  DE G   LHWACDRGH +
Sbjct: 149 LYHEEI-IREEDKDIFDYCRENNIDHITK-VIKTKNMDVNMKDEEGRTLLHWACDRGHKE 206

Query: 252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +V  L++   AD+N  D++G   L YA A E  D++E L+ SGA
Sbjct: 207 LVTVLLQY-RADINCQDNEGQTALHYAAACEFLDIVELLLQSGA 249

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Bos taurus (taxid: 9913)

>sp|Q9D061|ACBD6_MOUSE Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 15/223 (6%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++ + F +A  ++  LV+      LL  YA +KQ  VG CN  KP++++ E K K+ AW 
Sbjct: 41  SLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWK 100

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTK-GWVNVSSM 192
           +LG  + S+AM +YIA + ++D GW             Q S  K  EG +  G   VSS+
Sbjct: 101 ALGDSSPSQAMQEYIAAVKKLDPGW-----------NPQVSEKKGKEGSSGFGGPVVSSL 149

Query: 193 INDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
            ++E+ + + +KNI+++ +E  +D + K + K K  ++N  DE G   LHWACDRGH ++
Sbjct: 150 YHEET-IREEDKNIFDYCRENNIDHIAKAI-KSKAADVNMTDEEGRALLHWACDRGHKEL 207

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L++   A +N  D++G   L YA A E  D++E L+ SGA
Sbjct: 208 VKVLLQY-EAGINCQDNEGQTALHYAAACEFLDIVELLLQSGA 249

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Mus musculus (taxid: 10090)

>sp|Q4V8X4|ACBD6_DANRE Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio GN=acbd6 PE=2 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 13/225 (5%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++E+ F  A D +  LV+      LL  YA +KQ  VG+CN  KP +++ E + K++AW 
Sbjct: 59  DLENEFESAADRVRDLVQTASREQLLYLYARFKQVKVGKCNTSKPGFFDFEGQRKWSAWK 118

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
            LG M+  +AM +Y+  ++ +D         E +   S+  G ++  G   G   VSS+ 
Sbjct: 119 QLGDMSAEQAMQEYVTCVHALDP--------EGSQKSSERRGGEKRTG--FGGPAVSSLY 168

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
            +E ++ + +KNI+++ +E  ++ + K ++  K  ++N  DE G   LHWACDRGH  +V
Sbjct: 169 QEE-KIREEDKNIFDYCRENNIEHVSKAISS-KTVDVNTRDEEGRALLHWACDRGHKDLV 226

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
             L++   AD+N  D +G   L YA A E  +++E L+ +GA  S
Sbjct: 227 SLLLQN-NADINSQDDEGQTALHYASACEFAEIVELLLKAGADPS 270

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Danio rerio (taxid: 7955)

>sp|Q66JD7|ACBD6_XENTR Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis GN=acbd6 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 12/229 (5%)

Query: 70  RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKY 129
           +  E ++ +F QA  ++ ++     +  LL  YA YKQ  VG+CN  KP +++ E K K+
Sbjct: 27  KTEEELQGQFEQAAKHVQNVASVASTEQLLFLYARYKQVKVGRCNTPKPGFFDYEGKKKW 86

Query: 130 NAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV 189
            AW +LG  +  +AM++YI  + ++D  W  +  EE +         KE +    G V V
Sbjct: 87  EAWKALGDYSCQQAMNEYIETVKKLDPDWSPQALEEPH---------KEPKTTFGGPV-V 136

Query: 190 SSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249
           S +   +  L + +K+I+++ +E  +  +   L+     ++N  D+ G   LHWACDRGH
Sbjct: 137 SCLYKVQETLREEDKDIFDYCRENNISRVSHALST-GAIDVNVADDEGRCLLHWACDRGH 195

Query: 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
            ++V  L+    A +N+ DS+G   L YA A E  D+++ L++ GA  S
Sbjct: 196 TQLVSVLLFH-NAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGADPS 243

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q4V869|ACBD6_XENLA Acyl-CoA-binding domain-containing protein 6 OS=Xenopus laevis GN=acbd6 PE=2 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 70  RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKY 129
           +  E ++ +F QA  ++ ++     +  LL  YA YKQ  VG+CN  KP +++ E K K+
Sbjct: 27  KTEEELQCQFEQAAKHVQNVASVASTEQLLYLYARYKQVKVGRCNTPKPGFFDYEGKKKW 86

Query: 130 NAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV 189
            AW +LG  +  +AM++YI  + ++D  W  +  EE           KE +    G V V
Sbjct: 87  EAWKALGDYSHQQAMTEYIETVKKLDPDWSPQALEE---------PYKEPKTTFGGPV-V 136

Query: 190 SSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249
           S +   +  L + +K+I+++ +E     +   L+     ++N  D+ G + LHWACDRGH
Sbjct: 137 SCLYKVQETLREEDKDIFDYCRENNHSRVSHALST-GSVDVNVADDEGRSLLHWACDRGH 195

Query: 250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
            ++V  +I    A +N+ DS+G   L YA A E  D+++ L++ GA  S
Sbjct: 196 TQLVS-VILFHNAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGADPS 243

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Xenopus laevis (taxid: 8355)

>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 25/217 (11%)

Query: 89  LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148
           L +K+ +   L+ Y LYK AT G C   +PS   M A++K+ AW  LG M   EAM KYI
Sbjct: 113 LSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYI 172

Query: 149 ALLNEVDAGWEDKEQEEINWDESQESGSKE--NEGQTKGWVN--VSSMINDESQLDDNEK 204
            L+ ++   W              E GSK     G+  G +    SS++ +E    DNE 
Sbjct: 173 DLVTQLYPAW-------------VEGGSKRRNRSGEAAGPMGPVFSSLVYEEE--SDNEL 217

Query: 205 N---IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
               I+ +A+EG+++ L+K +       +N  D  G   LHWA DRGHL V + L++K  
Sbjct: 218 KIDAIHAFAREGEVENLLKCIE--NGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDK-N 274

Query: 262 ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
           ADVN  D++G   L YA   E   L E+LV   A ++
Sbjct: 275 ADVNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTT 311

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. Confers tolerance and binds to lead ions Pb(2+), probably by promoting lead translocation from roots to shoots. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 18/216 (8%)

Query: 89  LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148
           L +K+ S    + Y LYK AT G C   +PS   M A++K+ AW  LG M   EAM KYI
Sbjct: 123 LSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYI 182

Query: 149 ALLNEVDAGWEDKEQEEINWDESQESGSK------ENEGQTKGWVNVSSMINDESQLDDN 202
            ++ ++   W          D   ++GS+       N   T G V  S + ++ES+ +  
Sbjct: 183 EIVTQLYPTW---------LDGGVKAGSRGGDDAASNSRGTMGPVFSSLVYDEESENELK 233

Query: 203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGA 262
              I+ +A+EG+++ L+K +       +N  D  G   LHWA DRGHL + + L++K  A
Sbjct: 234 IDAIHGFAREGEVENLLKSIE--SGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDK-NA 290

Query: 263 DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
           DVN  D++G   L YA   +   + E+LV   A+++
Sbjct: 291 DVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTA 326

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54GC8|ACBD6_DICDI Acyl-CoA-binding domain-containing protein 6 homolog OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 127/252 (50%), Gaps = 38/252 (15%)

Query: 75  MEDRFNQACDYLPSLVKKLDS---STLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           +E++F  A DY+ +   KL +      L  Y  YKQAT+G CN   P +Y+   KSK+N+
Sbjct: 6   IENKFKLAVDYITNNSGKLSNIKNEEQLYLYCNYKQATIGDCNTKAPPFYDYIGKSKWNS 65

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWE-----DKEQEEINWDESQESGSK--------- 177
           WNSL  + K  AM+ YI+L+N +  GW+     ++  + +  ++ +    +         
Sbjct: 66  WNSLKGVEKIVAMNSYISLVNALSPGWDSNIKVERATQSVFLNDEEFKELEKKEKEEKEE 125

Query: 178 ----------ENEGQTKGWVNVS----SMINDESQLDDNEKNIYE----WAKEGKLDMLV 219
                     E E     W+       S+++DE+ L+  EKN  +    W     ++ + 
Sbjct: 126 LKKLEEENGGEIEKPKSKWMGPVLSKFSLVDDET-LEKLEKNTKQDLGYWVSVNDIERVK 184

Query: 220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279
           K++   K+  IN++DE+G   L WACDRG+ ++ + LIE  G++VNV D +G   L YA 
Sbjct: 185 KEIENDKNI-INEVDEDGRTALIWACDRGYFEIAKLLIEN-GSNVNVQDGEGMTPLHYAV 242

Query: 280 AIEHTDLIEYLV 291
             +  ++ + L+
Sbjct: 243 VCDQFEICKLLL 254

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
242009252	511	conserved hypothetical protein [Pediculu	0.81	0.475	0.366	5e-46
350406915	240	PREDICTED: acyl-CoA-binding domain-conta	0.683	0.854	0.419	4e-42
307174126	233	Acyl-CoA-binding domain-containing prote	0.683	0.879	0.388	4e-42
380028990	483	PREDICTED: putative ankyrin repeat prote	0.7	0.434	0.408	1e-41
340721725	262	PREDICTED: acyl-CoA-binding domain-conta	0.793	0.908	0.370	1e-40
383857939	479	PREDICTED: uncharacterized protein LOC10	0.676	0.423	0.405	2e-40
307195671	238	Acyl-CoA-binding domain-containing prote	0.693	0.873	0.398	3e-40
332031342	240	Acyl-CoA-binding domain-containing prote	0.686	0.858	0.370	7e-38
322797576	296	hypothetical protein SINV_80899 [Solenop	0.696	0.706	0.356	3e-37
260795083	251	hypothetical protein BRAFLDRAFT_69053 [B	0.726	0.868	0.369	7e-36

>gi|242009252|ref|XP_002425404.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509213|gb|EEB12666.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 156/295 (52%), Gaps = 52/295 (17%)

Query: 1   MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKI 60
           + A V+FD  TG SKG+GF+ ++N+ ++  V S+  H LEG RL                
Sbjct: 252 IYADVIFDWKTGFSKGYGFILYKNESSLKSVMSSQPHTLEGGRLV--------------- 296

Query: 61  ETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSW 120
                                A  ++ ++V  L    LL+FYA YKQA  G CN  KP W
Sbjct: 297 ---------------------ASSHVKNIVGNLTKEQLLEFYAHYKQAIEGPCNKPKPYW 335

Query: 121 YNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENE 180
           Y    K K+ AW +L  M  + AM KYI LLN++D  W DK    +              
Sbjct: 336 YEFSEKQKWEAWTNLNDMDSNLAMEKYIKLLNDIDPEWNDKPVSNV-------------- 381

Query: 181 GQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNC 240
            +T+GWV+ S M N++  +++++K +++W KEG LD  VK LT   +  IN+LDE+GL  
Sbjct: 382 -KTQGWVHHSCMENNDEVIEESKKTVFDWVKEGNLDK-VKALTSNINLEINKLDESGLGL 439

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           LHWA DRG++ VV++L+E+  ADVN+ D  G   L +A   E+ D+  YL+ SGA
Sbjct: 440 LHWASDRGNINVVKYLVEELKADVNLRDGTGQTPLHFAVICEYDDVANYLIESGA 494

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406915|ref|XP_003487922.1| PREDICTED: acyl-CoA-binding domain-containing protein 6-like [Bombus impatiens]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 136/224 (60%), Gaps = 19/224 (8%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           N+E  FN+A  YL SL  +L+S+ LLKFYALYKQAT+G CNI KP+WY M+A+ K++AW 
Sbjct: 15  NLEKTFNKATIYLQSLASELNSTELLKFYALYKQATIGPCNISKPNWYQMQARQKWDAWK 74

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
           SL  M+  +AM+ Y+  L++++  WE   Q E N                  WV +S +I
Sbjct: 75  SLNDMSCDDAMNNYVLELSKLNPNWEQDAQSESN-----------------NWVAISRLI 117

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           N E ++ D +K   +W KEG  D  V++L   +  + N  D  GL  +HWA DRGHL+++
Sbjct: 118 NMEDEISDTDKTFLDWVKEGH-DEKVQELLNKEPKHANLTDSEGLLPIHWAADRGHLRII 176

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
           + LI+K GA V+  D DG   L YA +  H D+++YL++ GA S
Sbjct: 177 EQLIKK-GASVDSQDEDGQTPLHYAASCGHLDVVKYLLSIGAES 219

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174126|gb|EFN64784.1| Acyl-CoA-binding domain-containing protein 6 [Camponotus floridanus]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 140/224 (62%), Gaps = 19/224 (8%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++E+ FN+A  YL +LV +LDS  LL FY LYKQATVG C+I +P+WY ++AK K+ AW 
Sbjct: 7   DLEESFNRAAKYLQTLVSELDSGQLLGFYGLYKQATVGPCDIPRPNWYQVQAKHKWEAWK 66

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
           +LG M++  AM+ Y+  + +++  WE++E+ +                 + GW +VS + 
Sbjct: 67  NLGDMSREAAMANYVHAIAKINPSWEEEEKAD-----------------SPGWTSVSKLS 109

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           N +++L D +K   +W KEG  +  V+++   +   +N  DE+GL  +HWA DRGH+K+V
Sbjct: 110 NTDTELRDTDKTFLDWVKEGN-EAKVREILNGEPMLVNMQDEDGLLPIHWAADRGHVKIV 168

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
           ++LI   GA+VN  D DG   L YA +  HT+ ++ L++SGA +
Sbjct: 169 EYLI-GSGANVNSQDRDGQTPLHYAASCGHTEAVKCLLSSGAQT 211

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028990|ref|XP_003698166.1| PREDICTED: putative ankyrin repeat protein FPV014-like [Apis florea]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 138/230 (60%), Gaps = 20/230 (8%)

Query: 68  FSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKS 127
           F R+   +E  FN+A  YL  L  +L+S+ LLKFYALYKQAT+G CNI KP+WY M+A+ 
Sbjct: 253 FCRILY-LEKTFNKATHYLQLLASELNSAELLKFYALYKQATIGPCNISKPNWYQMQARQ 311

Query: 128 KYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV 187
           K+ AW SL  M+  +AM+ YI  L +++  WE+  Q E                 +  WV
Sbjct: 312 KWEAWKSLNNMSCDDAMNNYIQELTKLNPNWEENVQSE-----------------SSNWV 354

Query: 188 NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR 247
            +S  IN E +++D +K   +W KEG+ + + + L K  +  IN++D  GL  +HWA DR
Sbjct: 355 AISRFINMEDEINDVDKTFLDWIKEGQEEKVQELLDKEPNL-INKMDSEGLLPIHWAADR 413

Query: 248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
           GHLK+++ LI+K GA +N  D  G   L YA +  H D+++YL++ GA S
Sbjct: 414 GHLKIIEQLIKK-GASINSQDEGGQTPLHYAASCGHLDVVKYLISIGAES 462

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721725|ref|XP_003399266.1| PREDICTED: acyl-CoA-binding domain-containing protein 6-like [Bombus terrestris]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 149/281 (53%), Gaps = 43/281 (15%)

Query: 17  FGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENME 76
           +GFV F +K  V  V + D HVL+  +LSI                  T     + E+  
Sbjct: 4   YGFVEFYDKAVVTFVLNKD-HVLDDGKLSI------------------TEGLKYLHEDSV 44

Query: 77  DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLG 136
            +F      + SL  +L+S+ LLKFYALYKQAT+G CNI KP+WY M+A+ K+ AW SL 
Sbjct: 45  KQF-----LIKSLASELNSTELLKFYALYKQATIGPCNISKPNWYQMQARQKWEAWKSLN 99

Query: 137 QMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDE 196
            M+  +AM+ Y+  L++ +  WE   Q E N                  WV +S +IN E
Sbjct: 100 DMSCDDAMNNYVLELSKFNPNWEQDAQSESN-----------------NWVAISRLINME 142

Query: 197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
            ++ D +K   +W KEG  D  V++L   +  + N  D  GL  +HWA DRGHL +++ L
Sbjct: 143 DEISDTDKTFLDWVKEGH-DEKVQELLNKEPKHANLTDSEGLLPIHWAADRGHLTIIEQL 201

Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
           I++ GA VN  D DG   L YA +  H D++ YL++ GA S
Sbjct: 202 IKR-GASVNSQDEDGQTPLHYAASCGHLDVVTYLLSIGAES 241

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857939|ref|XP_003704461.1| PREDICTED: uncharacterized protein LOC100882258 [Megachile rotundata]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 135/222 (60%), Gaps = 19/222 (8%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           N+ED F++A  +L SL  +L+S+ LLKFYALYKQAT+G C+  KP+WY +EA+ K+ AW 
Sbjct: 252 NLEDIFDKAAHHLQSLASELNSTELLKFYALYKQATIGPCDTSKPNWYQIEARQKWEAWK 311

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
           +L  M+   AM+ YI  L ++D  WE+  + E N                  WV VS +I
Sbjct: 312 NLNDMSHDTAMNSYIQELTKLDPNWEENIKSESN-----------------SWVAVSCLI 354

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           N E +++D +K   +W KEG  +  V++L   +   +N +D  GL  +HWA DRGHL ++
Sbjct: 355 NTEEEINDIDKTFLDWVKEGH-EGKVQELLDKEPRLVNSMDTEGLLPIHWAADRGHLGII 413

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + LI+K GA++N  D DG   L YA +  H D+++YL++ GA
Sbjct: 414 EQLIKK-GANINSQDEDGQSPLHYAASCGHLDVVKYLLSIGA 454

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195671|gb|EFN77513.1| Acyl-CoA-binding domain-containing protein 6 [Harpegnathos saltator]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 18/226 (7%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++EDRFN+A  Y+ SLV +LD+  LL FYALYKQATVG CNI +P+WY ++A  KY AW 
Sbjct: 10  DLEDRFNRASKYMQSLVSELDTDHLLTFYALYKQATVGPCNISRPNWYQVQAVRKYEAWK 69

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
            LG M++  AM+ YI ++  V+  WE    EE  ++ES            +GW +VS + 
Sbjct: 70  KLGDMSQEIAMANYIDVIARVNPSWE----EEAKFEES------------RGWTSVSKLP 113

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           N ++ L D EK   +W KEG  +  V+++   +     ++D+ GL  +HWA DRGH+ ++
Sbjct: 114 NTDAALKDTEKTFLDWLKEGN-EAKVREMVSKEPGLSGRMDDIGLLPIHWAADRGHVGIL 172

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
           + LIE+ G D+N  D +    L YA    H + + YL++ GA +S 
Sbjct: 173 KFLIEQ-GVDLNSLDLEEQTPLHYAAGCGHMEAVRYLLSIGADTSR 217

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031342|gb|EGI70855.1| Acyl-CoA-binding domain-containing protein 6 [Acromyrmex echinatior]

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 137/224 (61%), Gaps = 18/224 (8%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++E+ FN+A  YL +LV +LDS  LL FY LYKQATVG C+I +P+WY M+AK K+ AW 
Sbjct: 13  DLEETFNRASKYLQTLVSELDSGQLLAFYGLYKQATVGPCDIPRPNWYQMQAKHKWEAWK 72

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
           +LG M++  AM+ YI  + +++  W+++E          ++GS++       W+  S + 
Sbjct: 73  NLGDMSRETAMTNYIHGIEKINPTWDEEE---------AKAGSQQ-------WIVFSKLS 116

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
              ++L+D +K   +W KEG  +  V++    +   +N+ DE G++ +HWA DRG+L ++
Sbjct: 117 YGNAELNDEDKTFLDWIKEGN-EAKVREFLSGEPALVNKPDEEGMHPIHWAADRGYLGIL 175

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
            +LI K GA++N  D  G   L Y  + +H D ++YL++ GA S
Sbjct: 176 DYLI-KNGANINSRDQYGQTALHYVVSCDHVDAVKYLLSIGAQS 218

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797576|gb|EFZ19620.1| hypothetical protein SINV_80899 [Solenopsis invicta]

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 18/227 (7%)

Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           ++E+ FN+A  YL +LV +LDS  LL FY LYKQATVG C+  +P+WY ++AK K+ AW 
Sbjct: 69  DLEETFNRAAKYLQTLVSELDSGQLLAFYGLYKQATVGPCDTPRPNWYQVQAKQKWEAWK 128

Query: 134 SLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 193
           +LG M +  AM+ YI  +  ++  W+                ++E + ++  W+  S + 
Sbjct: 129 NLGDMDRETAMTNYIQGIARINPAWD----------------AEEMKAESSQWIVFSKLS 172

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
            D  +L+D +K   +W KEG     V++    +   +++ DE G++ +HWA DRG+L+++
Sbjct: 173 YDNVELNDEDKTFLDWIKEGNA-AKVREFLSSEPALVDKPDEEGMHPIHWAADRGYLEIL 231

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
            +LI K GA+VN  D  G   L Y  + +H D ++YL++ GA S+ T
Sbjct: 232 DYLI-KSGANVNSRDQYGQTALHYVVSCDHVDAVKYLLSIGAQSNIT 277

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260795083|ref|XP_002592536.1| hypothetical protein BRAFLDRAFT_69053 [Branchiostoma floridae] gi|229277756|gb|EEN48547.1| hypothetical protein BRAFLDRAFT_69053 [Branchiostoma floridae]

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 130/233 (55%), Gaps = 15/233 (6%)

Query: 66  ASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEA 125
           AS    + N+ D F QA D++ ++  +L +  LL  YA YKQ  VG+CN  KP +++ + 
Sbjct: 3   ASADDSSSNLADVFQQAVDHVATIAPQLSADQLLYLYARYKQVNVGRCNTAKPGFFDFQG 62

Query: 126 KSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKG 185
           K K++AWNSLG MA+ +AM++Y+  + + D  WE +E            G    +    G
Sbjct: 63  KQKWDAWNSLGGMAQDQAMTEYVDGVRKADPTWEPRE------------GGDSKKTSFMG 110

Query: 186 WVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC 245
            V VS+M  +E  + D  K  ++W KEG    + + L+   D +INQ D  GL+ LHWAC
Sbjct: 111 PV-VSTMSFEEEYISDKNKTAFDWCKEGNTKQMARLLSN-GDADINQQDSEGLSLLHWAC 168

Query: 246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
           DRGH  VV+ L+ K  A++N+ D DG   L YA   E   +++ L++S A  S
Sbjct: 169 DRGHEDVVRELL-KHKANINIQDEDGQTPLHYAATCEFLSIVQLLLDSSADPS 220

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
RGD|1305030	282	Acbd6 "acyl-CoA binding domain	0.74	0.787	0.364	3e-37
UNIPROTKB|F1PLQ8	282	ACBD6 "Uncharacterized protein	0.78	0.829	0.356	4.9e-37
UNIPROTKB|Q9BR61	282	ACBD6 "Acyl-CoA-binding domain	0.78	0.829	0.349	2.7e-36
UNIPROTKB|A2VDR2	282	ACBD6 "Acyl-CoA-binding domain	0.703	0.748	0.361	3.5e-36
UNIPROTKB|F1S683	282	ACBD6 "Uncharacterized protein	0.776	0.826	0.348	3.1e-35
UNIPROTKB|E1C483	268	ACBD6 "Uncharacterized protein	0.68	0.761	0.364	1.1e-34
MGI|MGI:1919732	282	Acbd6 "acyl-Coenzyme A binding	0.766	0.815	0.352	1.3e-34
ZFIN|ZDB-GENE-030131-2810	300	acbd6 "acyl-Coenzyme A binding	0.79	0.79	0.314	2.3e-32
UNIPROTKB|G3N0L6	221	ACBD6 "Acyl-CoA-binding domain	0.603	0.819	0.350	2.1e-29
TAIR|locus:2178426	338	ACBP1 "acyl-CoA binding protei	0.653	0.579	0.366	5.2e-26

RGD|1305030 Acbd6 "acyl-CoA binding domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 86/236 (36%), Positives = 139/236 (58%)

Query:    60 IETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPS 119
             +E+ +T   +    ++ + F +A  ++  LV+      LL  YA YKQ  VG CNI KP+
Sbjct:    28 LESFQTPE-AEATRSLAELFEKAAAHVQGLVQVASREQLLYLYARYKQVKVGNCNIPKPN 86

Query:   120 WYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN 179
             +++ E K K+ AW +LG  + S+AM +YIA + ++D GW        N   S++ G KE 
Sbjct:    87 FFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW--------NPQVSEKKG-KEG 137

Query:   180 EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLN 239
                  G V VSS+ ++E+ + + +KNI+++ +E  +D + K + K K  ++N  DE G  
Sbjct:   138 SSGFGGPV-VSSLYHEET-IREEDKNIFDYCRENNIDHITKAI-KSKTVDVNMTDEEGRA 194

Query:   240 CLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
              LHWACDRGH ++V+ L++ C A +N  D++G   L YA A E +D++E L+ SGA
Sbjct:   195 LLHWACDRGHKELVKVLLQ-CEAGINCQDNEGQTALHYAAACEFSDIVELLLQSGA 249

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1PLQ8 ACBD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 91/255 (35%), Positives = 142/255 (55%)

Query:    41 GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLK 100
             G  LS    DS + + ++  ET+ + S + +       F QA  +L  LV+      LL 
Sbjct:    16 GGELS-SGDDSGDVESRQSPETEASGSLAEL-------FEQAAAHLQGLVQVASREQLLY 67

Query:   101 FYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWED 160
              YA YKQ  VG CN  KPS+++ E K K+ AW +LG  + S+AM +YIA++ ++D GW  
Sbjct:    68 LYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNP 127

Query:   161 KEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVK 220
             +  E+         G + N G   G   VSS+ ++E  + + +KNI+++ +E  +D + K
Sbjct:   128 QSPEK--------KGKEANTGF--GGPVVSSLYHEEI-IREEDKNIFDYCRENNIDHVTK 176

Query:   221 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280
              + + K+ ++N  DE G   LHWACDRGH ++V  L+ +  AD+N  D +G   L YA A
Sbjct:   177 VI-RSKNVDVNMKDEEGRTLLHWACDRGHKELVTVLL-RYKADINCQDDEGQTALHYAAA 234

Query:   281 IEHTDLIEYLVNSGA 295
              E  D++E L+ SGA
Sbjct:   235 CEFLDIVELLLQSGA 249

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|Q9BR61 ACBD6 "Acyl-CoA-binding domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 89/255 (34%), Positives = 141/255 (55%)

Query:    41 GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLK 100
             G  LS    DS   +     E +ET+  + +       F +A  +L  L++      LL 
Sbjct:    16 GGELS-SGDDSGEVEFPHSPEIEETSCLAEL-------FEKAAAHLQGLIQVASREQLLY 67

Query:   101 FYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWED 160
              YA YKQ  VG CN  KPS+++ E K K+ AW +LG  + S+AM +YIA++ ++D GW  
Sbjct:    68 LYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNP 127

Query:   161 KEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVK 220
             +  E+         G + N G   G   +SS+ ++E+ + + +KNI+++ +E  +D + K
Sbjct:   128 QIPEK--------KGKEANTGF--GGPVISSLYHEET-IREEDKNIFDYCRENNIDHITK 176

Query:   221 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280
              + K K+ ++N  DE G   LHWACDRGH ++V  L++   AD+N  D++G   L YA A
Sbjct:   177 AI-KSKNVDVNVKDEEGRALLHWACDRGHKELVTVLLQH-RADINCQDNEGQTALHYASA 234

Query:   281 IEHTDLIEYLVNSGA 295
              E  D++E L+ SGA
Sbjct:   235 CEFLDIVELLLQSGA 249

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A2VDR2 ACBD6 "Acyl-CoA-binding domain-containing protein 6" [Bos taurus (taxid:9913)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 81/224 (36%), Positives = 131/224 (58%)

Query:    72 AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
             + ++ + F +A ++L  LV+      LL  YA YKQ  VG CN  KPS+++ E K K+ A
Sbjct:    39 SRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEA 98

Query:   132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS 191
             W +LG  + S+AM +YIA++ ++D  W  +  E+         G + N G   G   VSS
Sbjct:    99 WKALGDSSPSQAMQEYIAVVKKLDPSWNPQSPEK--------KGKEANTGF--GGPVVSS 148

Query:   192 MINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251
             + ++E  + + +K+I+++ +E  +D + K + K K+ ++N  DE G   LHWACDRGH +
Sbjct:   149 LYHEEI-IREEDKDIFDYCRENNIDHITKVI-KTKNMDVNMKDEEGRTLLHWACDRGHKE 206

Query:   252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +V  L++   AD+N  D++G   L YA A E  D++E L+ SGA
Sbjct:   207 LVTVLLQY-RADINCQDNEGQTALHYAAACEFLDIVELLLQSGA 249

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|F1S683 ACBD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 87/250 (34%), Positives = 142/250 (56%)

Query:    49 SDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQA 108
             S   +S   + +++ ET + SR   ++ + F +A  +L  LV+      LL  YA YKQ 
Sbjct:    20 SSGDDSGDAESLQSPETEA-SR---SLTELFEKAAAHLQGLVQVASREQLLYLYARYKQV 75

Query:   109 TVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINW 168
              VG CN  KPS+++ E K K+ AW +LG  + S+AM +YIA++ ++D  W  +  E+   
Sbjct:    76 KVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPDWNPQLPEK--- 132

Query:   169 DESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF 228
                   G + N G   G   VSS+ ++E  + + +KNI+++ +E  +D + K + K K+ 
Sbjct:   133 -----KGKETNTGF--GGPVVSSLYHEEI-IREEDKNIFDYCRENNIDHITKVI-KSKNV 183

Query:   229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
             ++N  DE G   LHWACDRGH  +V  L++   AD+N  D++G   L YA A E  D++E
Sbjct:   184 DVNMKDEEGRALLHWACDRGHKDLVTVLLQY-RADINSQDNEGQTALHYAAACEFLDIVE 242

Query:   289 YLVNSGAHSS 298
              L+ +GA ++
Sbjct:   243 LLLQAGADAT 252

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|E1C483 ACBD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/217 (36%), Positives = 122/217 (56%)

Query:    79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
             F QA + LP+L+       LL  YA YKQ   G CN  KP +++ E K K+ AW +LG  
Sbjct:    32 FEQAAERLPALLPNASKEQLLYLYARYKQVKFGTCNTPKPGFFDFEGKQKWEAWKALGDT 91

Query:   139 AKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQ 198
             +  +AM +Y+A + ++D  W           ++ E   KE++    G V VSS+  +E+ 
Sbjct:    92 SPHQAMQEYVATVKKLDPSWNP---------QTTEKRGKESKTAFGGPV-VSSLYQEET- 140

Query:   199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE 258
             + + +KNI+++ +E  +D + K +   K  ++N  DE G   LHWACDRGH ++V  L++
Sbjct:   141 IREEDKNIFDYCRENNIDYVTKAIQS-KKVDVNVADEEGRALLHWACDRGHKELVSVLLQ 199

Query:   259 KCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
                ADVN  D +G   L YA A E +D++E L+ SGA
Sbjct:   200 HA-ADVNSQDGEGQTALHYASACEFSDIVELLLQSGA 235

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919732 Acbd6 "acyl-Coenzyme A binding domain containing 6" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 87/247 (35%), Positives = 137/247 (55%)

Query:    49 SDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQA 108
             S   +S   +  +T E      +AE     F +A  ++  LV+      LL  YA +KQ 
Sbjct:    20 SSGDDSGDMESFQTPEAEGTRSLAE----LFEKAAAHVQGLVQVASREQLLYLYARFKQV 75

Query:   109 TVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINW 168
              VG CN  KP++++ E K K+ AW +LG  + S+AM +YIA + ++D GW        N 
Sbjct:    76 KVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW--------NP 127

Query:   169 DESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF 228
               S++ G KE      G V VSS+ ++E+ + + +KNI+++ +E  +D + K + K K  
Sbjct:   128 QVSEKKG-KEGSSGFGGPV-VSSLYHEET-IREEDKNIFDYCRENNIDHIAKAI-KSKAA 183

Query:   229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
             ++N  DE G   LHWACDRGH ++V+ L++   A +N  D++G   L YA A E  D++E
Sbjct:   184 DVNMTDEEGRALLHWACDRGHKELVKVLLQY-EAGINCQDNEGQTALHYAAACEFLDIVE 242

Query:   289 YLVNSGA 295
              L+ SGA
Sbjct:   243 LLLQSGA 249

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-2810 acbd6 "acyl-Coenzyme A binding domain containing 6" [Danio rerio (taxid:7955)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 79/251 (31%), Positives = 134/251 (53%)

Query:    49 SDSHNSQVKKKIETKETASFSRM-AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQ 107
             SDS +     K +     + +R+   ++E+ F  A D +  LV+      LL  YA +KQ
Sbjct:    33 SDSDSDFGLGKFDCSAGDASARLEGADLENEFESAADRVRDLVQTASREQLLYLYARFKQ 92

Query:   108 ATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEIN 167
               VG+CN  KP +++ E + K++AW  LG M+  +AM +Y+  ++ +D     K      
Sbjct:    93 VKVGKCNTSKPGFFDFEGQRKWSAWKQLGDMSAEQAMQEYVTCVHALDPEGSQKS----- 147

Query:   168 WDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKD 227
                S+  G ++  G   G   VSS+  +E ++ + +KNI+++ +E  ++ + K ++  K 
Sbjct:   148 ---SERRGGEKRTGF--GGPAVSSLYQEE-KIREEDKNIFDYCRENNIEHVSKAISS-KT 200

Query:   228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
              ++N  DE G   LHWACDRGH  +V  L++   AD+N  D +G   L YA A E  +++
Sbjct:   201 VDVNTRDEEGRALLHWACDRGHKDLVSLLLQN-NADINSQDDEGQTALHYASACEFAEIV 259

Query:   288 EYLVNSGAHSS 298
             E L+ +GA  S
Sbjct:   260 ELLLKAGADPS 270

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

UNIPROTKB|G3N0L6 ACBD6 "Acyl-CoA-binding domain-containing protein 6" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 68/194 (35%), Positives = 113/194 (58%)

Query:    72 AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
             + ++ + F +A ++L  LV+      LL  YA YKQ  VG CN  KPS+++ E K K+ A
Sbjct:    39 SRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEA 98

Query:   132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS 191
             W +LG  + S+AM +YIA++ ++D  W  +  E+         G + N G   G   VSS
Sbjct:    99 WKALGDSSPSQAMQEYIAVVKKLDPSWNPQSPEK--------KGKEANTGF--GGPVVSS 148

Query:   192 MINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 251
             + ++E  + + +K+I+++ +E  +D + K + K K+ ++N  DE G   LHWACDRGH +
Sbjct:   149 LYHEEI-IREEDKDIFDYCRENNIDHITKVI-KTKNMDVNMKDEEGRTLLHWACDRGHKE 206

Query:   252 VVQHLIEKCGADVN 265
             +V  L++   AD+N
Sbjct:   207 LVTVLLQY-RADIN 219

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 78/213 (36%), Positives = 111/213 (52%)

Query:    89 LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148
             L +K+ +   L+ Y LYK AT G C   +PS   M A++K+ AW  LG M   EAM KYI
Sbjct:   113 LSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYI 172

Query:   149 ALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNI-- 206
              L+ ++   W +   +  N      SG  E  G   G V  SS++ +E    DNE  I  
Sbjct:   173 DLVTQLYPAWVEGGSKRRN-----RSG--EAAGPM-GPV-FSSLVYEEES--DNELKIDA 221

Query:   207 -YEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
              + +A+EG+++ L+K +       +N  D  G   LHWA DRGHL V + L++K  ADVN
Sbjct:   222 IHAFAREGEVENLLKCIEN--GIPVNARDSEGRTPLHWAIDRGHLNVAEALVDK-NADVN 278

Query:   266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS 298
               D++G   L YA   E   L E+LV   A ++
Sbjct:   279 AKDNEGQTSLHYAVVCEREALAEFLVKQKADTT 311

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010288 "response to lead ion" evidence=IEP;IMP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0070300 "phosphatidic acid binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008289 "lipid binding" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RJK8	ACBD6_RAT	No assigned EC number	0.3670	0.7266	0.7730	yes	N/A
Q66JD7	ACBD6_XENTR	No assigned EC number	0.3144	0.7233	0.7587	yes	N/A
Q9D061	ACBD6_MOUSE	No assigned EC number	0.3587	0.6933	0.7375	yes	N/A
Q9BR61	ACBD6_HUMAN	No assigned EC number	0.3495	0.7533	0.8014	yes	N/A
Q4V8X4	ACBD6_DANRE	No assigned EC number	0.3288	0.7066	0.7066	yes	N/A
A2VDR2	ACBD6_BOVIN	No assigned EC number	0.3616	0.7033	0.7482	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	300
pfam00887	87	pfam00887, ACBP, Acyl CoA binding protein	3e-26
cd00435	85	cd00435, ACBP, Acyl CoA binding protein (ACBP) bin	5e-22
COG4281	87	COG4281, ACB, Acyl-CoA-binding protein [Lipid meta	1e-15
PTZ00458	90	PTZ00458, PTZ00458, acyl CoA binding protein; Prov	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-13
cd12242	73	cd12242, RRM_SLIRP, RNA recognition motif found in	4e-11
cd12330	75	cd12330, RRM2_Hrp1p, RNA recognition motif 2 in ye	2e-10
cd12325	72	cd12325, RRM1_hnRNPA_hnRNPD_like, RNA recognition	3e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-08
cd12323	74	cd12323, RRM2_MSI, RNA recognition motif 2 in RNA-	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
cd12362	73	cd12362, RRM3_CELF1-6, RNA recognition motif 3 in	2e-07
smart00360	73	smart00360, RRM, RNA recognition motif	3e-07
cd12576	75	cd12576, RRM1_MSI, RNA recognition motif 1 in RNA-	5e-07
cd12328	73	cd12328, RRM2_hnRNPA_like, RNA recognition motif 2	6e-07
cd12327	80	cd12327, RRM2_DAZAP1, RNA recognition motif 2 in D	3e-06
cd12326	79	cd12326, RRM1_hnRNPA0, RNA recognition motif 1 fou	3e-06
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	3e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
cd12384	76	cd12384, RRM_RBM24_RBM38_like, RNA recognition mot	5e-06
cd12345	80	cd12345, RRM2_SECp43_like, RNA recognition motif 2	6e-06
cd12577	76	cd12577, RRM1_Hrp1p, RNA recognition motif 1 in ye	7e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-06
cd12574	82	cd12574, RRM1_DAZAP1, RNA recognition motif 1 in D	8e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
cd12578	78	cd12578, RRM1_hnRNPA_like, RNA recognition motif 1	1e-05
cd12321	77	cd12321, RRM1_TDP43, RNA recognition motif 1 in TA	1e-05
cd12575	74	cd12575, RRM1_hnRNPD_like, RNA recognition motif 1	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
cd12757	75	cd12757, RRM1_hnRNPAB, RNA recognition motif 1 in	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	3e-05
cd12399	78	cd12399, RRM_HP0827_like, RNA recognition motif in	3e-05
cd12329	75	cd12329, RRM2_hnRNPD_like, RNA recognition motif 2	6e-05
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	7e-05
cd12579	80	cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in	8e-05
cd12572	74	cd12572, RRM2_MSI1, RNA recognition motif 2 in RNA	9e-05
cd12758	76	cd12758, RRM1_hnRPDL, RNA recognition motif 1 in h	9e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
cd12412	80	cd12412, RRM_DAZL_BOULE, RNA recognition motif in	1e-04
cd12382	80	cd12382, RRM_RBMX_like, RNA recognition motif in h	1e-04
cd12580	77	cd12580, RRM2_hnRNPA1, RNA recognition motif 2 in	1e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	1e-04
cd12756	74	cd12756, RRM1_hnRNPD, RNA recognition motif 1 in h	2e-04
cd12619	75	cd12619, RRM2_PUB1, RNA recognition motif 2 in yea	2e-04
cd12759	77	cd12759, RRM1_MSI1, RNA recognition motif 1 in RNA	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
cd12408	77	cd12408, RRM_eIF3G_like, RNA recognition motif in	3e-04
cd12363	78	cd12363, RRM_TRA2, RNA recognition motif in transf	3e-04
cd12760	76	cd12760, RRM1_MSI2, RNA recognition motif 1 in RNA	3e-04
cd12447	76	cd12447, RRM1_gar2, RNA recognition motif 1 in yea	5e-04
cd12311	73	cd12311, RRM_SRSF2_SRSF8, RNA recognition motif in	5e-04
cd12582	80	cd12582, RRM2_hnRNPA3, RNA recognition motif 2 in	5e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	9e-04
cd12761	81	cd12761, RRM1_hnRNPA1, RNA recognition motif 1 in	0.001
cd12573	79	cd12573, RRM2_MSI2, RNA recognition motif 2 in RNA	0.001
cd12380	80	cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou	0.002
cd12335	83	cd12335, RRM2_SF3B4, RNA recognition motif 2 in sp	0.002
PLN03134	144	PLN03134, PLN03134, glycine-rich RNA-binding prote	0.002
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	0.002
cd12284	73	cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2	0.002
cd12581	80	cd12581, RRM2_hnRNPA2B1, RNA recognition motif 2 i	0.003
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	0.003
cd12762	81	cd12762, RRM1_hnRNPA2B1, RNA recognition motif 1 i	0.003
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003
cd12322	71	cd12322, RRM2_TDP43, RNA recognition motif 2 in TA	0.004
cd12353	75	cd12353, RRM2_TIA1_like, RNA recognition motif 2 i	0.004
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	0.004

>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein

 Score = 98.8 bits (247), Expect = 3e-26
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 75  MEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAW 132
           +E+ F  A  ++  L K  +  +   LK YALYKQAT G  N  +P  +++  K+K++AW
Sbjct: 1   LEEEFEAAVKFVKKLPKDGRPSNEEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKWDAW 60

Query: 133 NSLGQMAKSEAMSKYIALLNEVDAGWE 159
             L  M+K EAM KY+ L+ E+   + 
Sbjct: 61  KKLKGMSKEEAMKKYVELVEELVEKYG 87

Length = 87

>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

 Score = 87.4 bits (217), Expect = 5e-22
 Identities = 32/85 (37%), Positives = 55/85 (64%)

Query: 75  MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
           +++ F  A + +  L  K  +   L+ Y+LYKQATVG CN ++P  ++++ ++K++AWNS
Sbjct: 1   LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNS 60

Query: 135 LGQMAKSEAMSKYIALLNEVDAGWE 159
           L  M+K +AM  YIA + E+ A + 
Sbjct: 61  LKGMSKEDAMKAYIAKVEELIAKYA 85

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected. Length = 85

>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism]

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 30/83 (36%), Positives = 49/83 (59%)

Query: 75  MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
           +  RF QA   +  L +K  +  LLK YAL+KQ +VG  + +KP ++++  + KY AW  
Sbjct: 2   LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAG 61

Query: 135 LGQMAKSEAMSKYIALLNEVDAG 157
           L   ++ +A  +YIAL+ E+ A 
Sbjct: 62  LKGKSQEDARQEYIALVEELKAK 84

Length = 87

>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 75  MEDRFNQACDYLPSLVKK--LDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAW 132
           M D F +   ++ SL K   L     L  Y  YKQ+TVG CNI +PS +  + + KY AW
Sbjct: 1   MADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAW 60

Query: 133 NSLGQMAKSEAMSKYIALLNEVDAGWEDKE 162
            S+  + + +A  +Y+ ++ E+   WE  E
Sbjct: 61  KSIENLNREDAKKRYVEIVTELFPNWEKGE 90

Length = 90

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A  G L++ VK L +    ++N  D +G   LH A   GHL++V+ L+EK GADVN  D 
Sbjct: 15  ASNGHLEV-VKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDK 71

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           DG+  L  A    + D+++ L+  GA
Sbjct: 72  DGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           AK G L++ VK L +    ++N  D++G   LH A   G+L VV+ L++  GADVN  D 
Sbjct: 48  AKNGHLEI-VKLLLEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDK 104

Query: 270 DGDYGLDYAKAIEHTDLIEYLV 291
           DG   L  A    H ++++ L+
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
           N  DE+G   LH A   GHL+VV+ L+E  GADVN  D+DG   L  A    H ++++ L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 291 VNSGA 295
           +  GA
Sbjct: 60  LEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           AK G L++ VK L + K  ++N  D +    LH A   G+L++V+ L+E  GADVN  D 
Sbjct: 5   AKNGNLEL-VKLLLE-KGADVNLGDTD--TALHLAARNGNLEIVKLLLEH-GADVNAKDK 59

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           DG+  L  A    + ++++ L+  GA
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|240688 cd12242, RRM_SLIRP, RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          + +V FDK TGLSKG+GFV+F +++ ++       H+LEG++L +Q
Sbjct: 28 SCNVPFDKETGLSKGYGFVSFSSRDGLENALQKQKHILEGNKLQVQ 73

This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities. . Length = 73

>gnl|CDD|240776 cd12330, RRM2_Hrp1p, RNA recognition motif 2 in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
          A +M D +TG S+GFGFVTF ++ AV++VFS     L G ++ ++ 
Sbjct: 29 AQLMQDHDTGRSRGFGFVTFDSESAVERVFSAGMLELGGKQVEVKR 74

This subfamily corresponds to the RRM1 of Hrp1p and similar proteins. Hrp1p or Nab4p, also termed cleavage factor IB (CFIB), is a sequence-specific trans-acting factor that is essential for mRNA 3'-end formation in yeast Saccharomyces cerevisiae. It can be UV cross-linked to RNA and specifically recognizes the (UA)6 RNA element required for both, the cleavage and poly(A) addition steps. Moreover, Hrp1p can shuttle between the nucleus and the cytoplasm, and play an additional role in the export of mRNAs to the cytoplasm. Hrp1p also interacts with Rna15p and Rna14p, two components of CF1A. In addition, Hrp1p functions as a factor directly involved in modulating the activity of the nonsense-mediated mRNA decay (NMD) pathway; it binds specifically to a downstream sequence element (DSE)-containing RNA and interacts with Upf1p, a component of the surveillance complex, further triggering the NMD pathway. Hrp1p contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an arginine-glycine-rich region harboring repeats of the sequence RGGF/Y. . Length = 75

>gnl|CDD|240771 cd12325, RRM1_hnRNPA_hnRNPD_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          +M D  TG S+GFGFVTF +  +VDKV +   HVL+G
Sbjct: 30 IMKDPITGRSRGFGFVTFADPSSVDKVLAAKPHVLDG 66

This subfamily corresponds to the RRM1 in the hnRNP A subfamily which includes hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. The hnRNP D subfamily includes hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins. hnRNP D0 is a UUAG-specific nuclear RNA binding protein that may be involved in pre-mRNA splicing and telomere elongation. hnRNP A/B is an RNA unwinding protein with a high affinity for G- followed by U-rich regions. hnRNP A/B has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus, plays an important role in apoB mRNA editing. hnRNP DL (or hnRNP D-like) is a dual functional protein that possesses DNA- and RNA-binding properties. It has been implicated in mRNA biogenesis at the transcriptional and post-transcriptional levels. All members in this subfamily contain two putative RRMs and a glycine- and tyrosine-rich C-terminus. The family also contains DAZAP1 (Deleted in azoospermia-associated protein 1), RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins. They all harbor two RRMs. . Length = 72

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           G   LH A   G L++V++L+EK G D+N TD DG+  L  A    + ++++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
           A+ G L++ VK L +    ++N  D++G   LH A   G+L++V+ L+E  GAD+N+ D
Sbjct: 36  ARNGNLEI-VKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH-GADINLKD 91

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 222 LTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
           L +    ++N  D NG   LH A   G L++VQ L++  G D+N+ DSDG   LD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|240769 cd12323, RRM2_MSI, RNA recognition motif 2 in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 43
          +A +MFDK T   +GFGFVTF++++ VDKV     H +    
Sbjct: 28 DAMLMFDKQTNRHRGFGFVTFESEDVVDKVCEIHFHEINNKM 69

This subfamily corresponds to the RRM2.in Musashi-1 (also termed Msi1), a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. It is evolutionarily conserved from invertebrates to vertebrates. Musashi-1 is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). It has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, Musashi-1 represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-2 (also termed Msi2) has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Both, Musashi-1 and Musashi-2, contain two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 74

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
           +G   LH A   GHL+VV+ L+E  GADVN  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA-GADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKE-AVDKVFSTDSHVLEGSRLSIQ 47
          ++A V  DKNTG SK FGFV++ N E A   + + +   + G RL +Q
Sbjct: 26 ISAKVFVDKNTGQSKCFGFVSYDNPESAQAAIKAMNGFQVGGKRLKVQ 73

This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 46
          +  ++ DK TG SKGF FV F+++E  +K     +   L+G  L +
Sbjct: 28 SVRLVRDKETGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|241020 cd12576, RRM1_MSI, RNA recognition motif 1 in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 44
          VM D  T  S+GFGFVTF +  +VDKV +   H L+G ++
Sbjct: 30 VMRDPTTKRSRGFGFVTFSDPASVDKVLAQGPHELDGKKI 69

This subfamily corresponds to the RRM1 in Musashi-1 and Musashi-2. Musashi-1 (also termed Msi1) is a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. It is evolutionarily conserved from invertebrates to vertebrates. Musashi-1 is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). It has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, Musashi-1 represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-2 (also termed Msi2) has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Both, Musashi-1 and Musashi-2, contain two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 75

>gnl|CDD|240774 cd12328, RRM2_hnRNPA_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 44
            ++ DK TG  +GF FVTF + + VDK+     H + G R+
Sbjct: 29 VEIVTDKETGKKRGFAFVTFDDYDPVDKIVLQKYHTINGHRV 70

This subfamily corresponds to the RRM2 of hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 73

>gnl|CDD|240773 cd12327, RRM2_DAZAP1, RNA recognition motif 2 in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/43 (32%), Positives = 29/43 (67%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          VM+D      +GFGF+TF+++++VD+V +   H + G ++ ++
Sbjct: 34 VMYDHEKKRPRGFGFITFESEDSVDQVVNEHFHDINGKKVEVK 76

This subfamily corresponds to the RRM2 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated is predominantly nuclear and the nonacetylated form is in cytoplasm. DAZAP1 also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain. . Length = 80

>gnl|CDD|240772 cd12326, RRM1_hnRNPA0, RNA recognition motif 1 found in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
          VM D NT  S+GFGF+TF + +  D+      H ++G+++ ++ +
Sbjct: 34 VMVDPNTKRSRGFGFITFSSADEADEAMEAQPHSIDGNQIELKRA 78

This subfamily corresponds to the RRM1 of hnRNP A0 which is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 79

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 8  DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          D+ TG+ KGFG+V F+ K++V      +   L+G ++ ++
Sbjct: 34 DRKTGIGKGFGYVLFKTKDSVALALKLNGIKLKGRKIRVK 73

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           LH A   G+L++V+ L+EK GADVN+ D+  D  L  A    + ++++ L+  GA
Sbjct: 1   LHLAAKNGNLELVKLLLEK-GADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA 52

Length = 91

>gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 31/45 (68%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          A V+ D+ TG S+G+GFVTF++KE+ ++     + +++G + ++ 
Sbjct: 30 AVVITDRQTGKSRGYGFVTFKDKESAERACKDPNPIIDGRKANVN 74

This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|240791 cd12345, RRM2_SECp43_like, RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 43
           A V+ D  TG SKG+GFV F +++  D+  +  + V   SR
Sbjct: 31 GAKVVMDPVTGRSKGYGFVRFGDEDERDRALTEMNGVYCSSR 72

This subfamily corresponds to the RRM2 in tRNA selenocysteine-associated protein 1 (SECp43), yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8, and similar proteins. SECp43 is an RNA-binding protein associated specifically with eukaryotic selenocysteine tRNA [tRNA(Sec)]. It may play an adaptor role in the mechanism of selenocysteine insertion. SECp43 is located primarily in the nucleus and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal polar/acidic region. Yeast proteins, NGR1 and NAM8, show high sequence similarity with SECp43. NGR1 is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA). It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains three RRMs, two of which are followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the C-terminus which also harbors a methionine-rich region. NAM8 is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. NAM8 also contains three RRMs. . Length = 80

>gnl|CDD|241021 cd12577, RRM1_Hrp1p, RNA recognition motif 1 in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
           + +VM D  TG S+GFGF+TF+  ++V++V   + H+L+G
Sbjct: 26 TDCTVMRDSATGRSRGFGFLTFKKPKSVNEVMKKE-HILDG 65

This subfamily corresponds to the RRM1 of Hrp1p and similar proteins. Hrp1p or Nab4p, also termed cleavage factor IB (CFIB), is a sequence-specific trans-acting factor that is essential for mRNA 3'-end formation in yeast Saccharomyces cerevisiae. It can be UV cross-linked to RNA and specifically recognizes the (UA)6 RNA element required for both, the cleavage and poly(A) addition, steps. Moreover, Hrp1p can shuttle between the nucleus and the cytoplasm, and play an additional role in the export of mRNAs to the cytoplasm. Hrp1p also interacts with Rna15p and Rna14p, two components of CF1A. In addition, Hrp1p functions as a factor directly involved in modulating the activity of the nonsense-mediated mRNA decay (NMD) pathway. It binds specifically to a downstream sequence element (DSE)-containing RNA and interacts with Upf1p, a component of the surveillance complex, further triggering the NMD pathway. Hrp1p contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an arginine-glycine-rich region harboring repeats of the sequence RGGF/Y. . Length = 76

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 190 SSMINDESQL--DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR 247
             +I D      D + +     A     D +VK L      ++N  D +G   LH A   
Sbjct: 58  LKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALN 116

Query: 248 GHLK-----VVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           G+       V + L+E        N+ D DG+  L +A      D++E L+ +GA
Sbjct: 117 GNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Length = 235

>gnl|CDD|241018 cd12574, RRM1_DAZAP1, RNA recognition motif 1 in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV 56
          +M DK T  S+GFGFV F++   V  V +   H L+G  +  +P      Q 
Sbjct: 31 IMKDKTTNRSRGFGFVKFKDPNCVGTVLAGGPHTLDGRTIDPKPCTPRGMQP 82

This subfamily corresponds to the RRM1 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated form is predominantly nuclear and the nonacetylated form is in cytoplasm. It also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain. . Length = 82

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
               IN  D  G   LH+A    + + V++L++  GA+ N+ +  GD  L  A    + +
Sbjct: 181 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILNNNKE 239

Query: 286 LIEYLVNSGA 295
           + + L+N+G 
Sbjct: 240 IFKLLLNNGP 249

Length = 422

>gnl|CDD|241022 cd12578, RRM1_hnRNPA_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          VM D NT  S+GFGFVTF +   VD   +   H ++G
Sbjct: 31 VMKDPNTKRSRGFGFVTFASASEVDAAMNARPHKVDG 67

This subfamily corresponds to the RRM1 in hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 78

>gnl|CDD|240767 cd12321, RRM1_TDP43, RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
          V  D  TG SKGFGFV F + E   KV S   H+++G    ++  +S
Sbjct: 31 VKKDPKTGQSKGFGFVRFADYEDQVKVLSQ-RHMIDGRWCDVKIPNS 76

This subfamily corresponds to the RRM1 of TDP-43 (also termed TARDBP), a ubiquitously expressed pathogenic protein whose normal function and abnormal aggregation are directly linked to the genetic disease cystic fibrosis, and two neurodegenerative disorders: frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). TDP-43 binds both DNA and RNA, and has been implicated in transcriptional repression, pre-mRNA splicing and translational regulation. TDP-43 is a dimeric protein with two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal glycine-rich domain. The RRMs are responsible for DNA and RNA binding; they bind to TAR DNA and RNA sequences with UG-repeats. The glycine-rich domain can interact with the hnRNP family proteins to form the hnRNP-rich complex involved in splicing inhibition. It is also essential for the cystic fibrosis transmembrane conductance regulator (CFTR) exon 9-skipping activity. . Length = 77

>gnl|CDD|241019 cd12575, RRM1_hnRNPD_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          ++ ++  D  TG S+GFGFV F++  +V+KV     H L+G
Sbjct: 26 VDCTIKIDPVTGRSRGFGFVLFKDAASVEKVLDQKEHKLDG 66

This subfamily corresponds to the RRM1 in hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins. hnRNP D0 is a UUAG-specific nuclear RNA binding protein that may be involved in pre-mRNA splicing and telomere elongation. hnRNP A/B is an RNA unwinding protein with a high affinity for G- followed by U-rich regions. hnRNP A/B has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus plays an important role in apoB mRNA editing. hnRNP DL (or hnRNP D-like) is a dual functional protein that possesses DNA- and RNA-binding properties. It has been implicated in mRNA biogenesis at the transcriptional and post-transcriptional levels. All members in this family contain two putative RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glycine- and tyrosine-rich C-terminus. . Length = 74

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA- 278
             L  + D ++   D +G   LH A  +G  K+V+ L+   GADVN  D+DGD  L  A 
Sbjct: 56  LLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAA 114

Query: 279 ----KAIEHTDLIEYLVNSGAHSSN 299
                   + ++ + L+ +GA    
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDV 139

Length = 235

>gnl|CDD|241201 cd12757, RRM1_hnRNPAB, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) and similar proteins

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          + ++  D NTG S+GFGF+ F++  +V+KV     H L+G
Sbjct: 28 DCTIKMDPNTGRSRGFGFILFKDASSVEKVLEQKEHRLDG 67

This subgroup corresponds to the RRM1 of hnRNP A/B, also termed APOBEC1-binding protein 1 (ABBP-1), which is an RNA unwinding protein with a high affinity for G- followed by U-rich regions. hnRNP A/B has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus plays an important role in apoB mRNA editing. hnRNP A/B contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long C-terminal glycine-rich domain that contains a potential ATP/GTP binding loop. . Length = 75

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV 266
           +G   LH A   G+L++V+ L+E  GAD+N 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEH-GADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV 266
           +G   LH A + G+L+VV+ L++K GAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK-GADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
          +A V+ D+ TG S+GFGFV  +  E  +  
Sbjct: 28 SARVITDRETGRSRGFGFVEMETAEEANAA 57

This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78

>gnl|CDD|240775 cd12329, RRM2_hnRNPD_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
             +  DK T   +GF F+TF ++E V K+  T  HV+ G ++ ++
Sbjct: 28 EIELPMDKKTNKRRGFCFITFDSEEPVKKILETQFHVIGGKKVEVK 73

This subfamily corresponds to the RRM2 of hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins. hnRNP D0, a UUAG-specific nuclear RNA binding protein that may be involved in pre-mRNA splicing and telomere elongation. hnRNP A/B is an RNA unwinding protein with a high affinity for G- followed by U-rich regions. It has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus plays an important role in apoB mRNA editing. hnRNP DL (or hnRNP D-like) is a dual functional protein that possesses DNA- and RNA-binding properties. It has been implicated in mRNA biogenesis at the transcriptional and post-transcriptional levels. All memembers in this family contain two putative RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glycine- and tyrosine-rich C-terminus. . Length = 75

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKV------FSTDSHVLEGSRLSIQPS 49
          A ++ DK TG SKG  FV F+ KE+  K              L+G RL +  +
Sbjct: 30 ARIVKDKLTGHSKGTAFVKFKTKESAQKCLEAADNAEDSGLSLDGRRLIVTLA 82

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

>gnl|CDD|241023 cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          A V+ DK TG  +GFGFV FQN ++ DK      H + G R+ ++
Sbjct: 29 AEVIADKQTGKKRGFGFVYFQNHDSADKAAVVKFHPINGHRVEVK 73

This subgroup corresponds to the RRM2 of hnRNP A0, a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 80

>gnl|CDD|241016 cd12572, RRM2_MSI1, RNA recognition motif 2 in RNA-binding protein Musashi homolog 1 (Musashi-1) and similar proteins

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSH 37
          +A +MFDK T   +GFGFVTF++++ V+KV     H
Sbjct: 28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH 63

This subgroup corresponds to the RRM2 of Musashi-1. The mammalian MSI1 gene encoding Musashi-1 (also termed Msi1) is a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. Musashi-1 is evolutionarily conserved from invertebrates to vertebrates. It is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1) and has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. It represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-1 contains two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 74

>gnl|CDD|241202 cd12758, RRM1_hnRPDL, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          ++ ++  D  TG S+GFGFV F++  +VDKV     H L+G
Sbjct: 27 LDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDG 67

This subgroup corresponds to the RRM1 of hnRNP DL (or hnRNP D-like), also termed AU-rich element RNA-binding factor, or JKT41-binding protein (protein laAUF1 or JKTBP), which is a dual functional protein that possesses DNA- and RNA-binding properties. It has been implicated in mRNA biogenesis at the transcriptional and post-transcriptional levels. hnRNP DL binds single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) in a non-sequencespecific manner, and interacts with poly(G) and poly(A) tenaciously. It contains two putative two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glycine- and tyrosine-rich C-terminus. . Length = 76

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257
           A  G+L+ LVK L + K  +IN+ DE+G   LH A + G+L+V++ L+
Sbjct: 9   AISGRLE-LVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 11 TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
           G+SKG+GFVTF+ +E  +K+ +  +    G +L+I P
Sbjct: 39 AGVSKGYGFVTFETQEDAEKILAMGNLNFRGKKLNIGP 76

This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80

>gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQN-KEAVDKVFSTDSHVLEGSRLSIQ 47
            +M D  TG S+GFGFVTF++ ++A   +   +   LEG  + ++
Sbjct: 31 VLLMKDPETGESRGFGFVTFESVEDADAAIRDLNGKELEGRVIKVE 76

This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80

>gnl|CDD|241024 cd12580, RRM2_hnRNPA1, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) and similar proteins

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKI 60
          +M D+ +G  +GF FVTF + ++VDK+     H + G          HN +V+K +
Sbjct: 32 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKAL 77

This subgroup corresponds to the RRM2 of hnRNP A1, also termed helix-destabilizing protein, or single-strand RNA-binding protein, or hnRNP core protein A1, an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A1 has been characterized as a splicing silencer, often acting in opposition to an activating hnRNP H. It silences exons when bound to exonic elements in the alternatively spliced transcripts of c-src, HIV, GRIN1, and beta-tropomyosin. hnRNP A1 can shuttle between the nucleus and the cytoplasm. Thus, it may be involved in transport of cellular RNAs, including the packaging of pre-mRNA into hnRNP particles and transport of poly A+ mRNA from the nucleus to the cytoplasm. The cytoplasmic hnRNP A1 has high affinity with AU-rich elements, whereas the nuclear hnRNP A1 has high affinity with a polypyrimidine stretch bordered by AG at the 3' ends of introns. hnRNP A1 is also involved in the replication of an RNA virus, such as mouse hepatitis virus (MHV), through an interaction with the transcription-regulatory region of viral RNA. Moreover, hnRNP A1, together with the scaffold protein septin 6, serves as host proteins to form a complex with NS5b and viral RNA, and further play important roles in the replication of Hepatitis C virus (HCV). hnRNP A1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. The RRMs of hnRNP A1 play an important role in silencing the exon and the glycine-rich domain is responsible for protein-protein interactions. . Length = 77

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRL 44
           +  ++ D  TG SKGF FV F+++E  +K     +   L G  L
Sbjct: 26 ESIRIVRD-ETGRSKGFAFVEFEDEEDAEKALEALNGKELGGREL 69

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|241200 cd12756, RRM1_hnRNPD, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          ++ ++  D  TG S+GFGFV F+  E+VDKV     H L G
Sbjct: 26 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 66

This subgroup corresponds to the RRM1 of hnRNP D0, also termed AU-rich element RNA-binding protein 1, which is a UUAG-specific nuclear RNA binding protein that may be involved in pre-mRNA splicing and telomere elongation. hnRNP D0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), in the middle and an RGG box rich in glycine and arginine residues in the C-terminal part. Each of RRMs can bind solely to the UUAG sequence specifically. . Length = 74

>gnl|CDD|241063 cd12619, RRM2_PUB1, RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 43
          +A VM+D  +G S+G+GFV+F++++  +   +  +    GSR
Sbjct: 28 DARVMWDMKSGRSRGYGFVSFRSQQDAENAINEMNGKWLGSR 69

This subgroup corresponds to the RRM2 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA). However, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 75

>gnl|CDD|241203 cd12759, RRM1_MSI1, RNA recognition motif 1 in RNA-binding protein Musashi homolog 1 (Musashi-1) and similar proteins

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLE 40
          VM D  T  S+GFGFVTF ++  VDKV +   H L+
Sbjct: 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 67

This subgroup corresponds to the RRM1 of Musashi-1. The mammalian MSI1 gene encoding Musashi-1 (also termed Msi1) is a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells and associated with asymmetric divisions in neural progenitor cells. Musashi-1 is evolutionarily conserved from invertebrates to vertebrates. It is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). Musashi-1 has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, it represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-1 contains two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 77

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
           N  D +G   LH AC  GH++VV+ L+E  GAD  + D DG   L+ A+     ++++ L
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|240854 cd12408, RRM_eIF3G_like, RNA recognition motif in eukaryotic translation initiation factor 3 subunit G (eIF-3G) and similar proteins

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 8  DKNTGLSKGFGFVTFQNKE 26
          DK TG S+GF FVTF  +E
Sbjct: 34 DKETGQSRGFAFVTFHTRE 52

This subfamily corresponds to the RRM of eIF-3G and similar proteins. eIF-3G, also termed eIF-3 subunit 4, or eIF-3-delta, or eIF3-p42, or eIF3-p44, is the RNA-binding subunit of eIF3, a large multisubunit complex that plays a central role in the initiation of translation by binding to the 40 S ribosomal subunit and promoting the binding of methionyl-tRNAi and mRNA. eIF-3G binds 18 S rRNA and beta-globin mRNA, and therefore appears to be a nonspecific RNA-binding protein. eIF-3G is one of the cytosolic targets and interacts with mature apoptosis-inducing factor (AIF). eIF-3G contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). This family also includes yeast eIF3-p33, a homolog of vertebrate eIF-3G, plays an important role in the initiation phase of protein synthesis in yeast. It binds both, mRNA and rRNA, fragments due to an RRM near its C-terminus. . Length = 77

>gnl|CDD|240809 cd12363, RRM_TRA2, RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 12/22 (54%), Positives = 18/22 (81%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKE 26
          V++D+ TG S+GFGFV F++ E
Sbjct: 31 VVYDQKTGRSRGFGFVYFESVE 52

This subfamily corresponds to the RRM of two mammalian homologs of Drosophila transformer-2 (Tra2), TRA2-alpha, TRA2-beta (also termed SFRS10), and similar proteins found in eukaryotes. TRA2-alpha is a 40-kDa serine/arginine-rich (SR) protein that specifically binds to gonadotropin-releasing hormone (GnRH) exonic splicing enhancer on exon 4 (ESE4) and is necessary for enhanced GnRH pre-mRNA splicing. It strongly stimulates GnRH intron A excision in a dose-dependent manner. In addition, TRA2-alpha can interact with either 9G8 or SRp30c, which may also be crucial for ESE-dependent GnRH pre-mRNA splicing. TRA2-beta is a serine/arginine-rich (SR) protein that controls the pre-mRNA alternative splicing of the calcitonin/calcitonin gene-related peptide (CGRP), the survival motor neuron 1 (SMN1) protein and the tau protein. Both, TRA2-alpha and TRA2-beta, contains a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), flanked by the N- and C-terminal arginine/serine (RS)-rich regions. . Length = 78

>gnl|CDD|241204 cd12760, RRM1_MSI2, RNA recognition motif 1 in RNA-binding protein Musashi homolog 2 (Musashi-2 ) and similar proteins

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
          VM D  T  S+GFGFVTF +  +VDKV +   H L+    +I P
Sbjct: 31 VMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSK--TIDP 72

This subgroup corresponds to the RRM2 of Musashi-2 (also termed Msi2) which has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Musashi-2 contains two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 76

>gnl|CDD|240893 cd12447, RRM1_gar2, RNA recognition motif 1 in yeast protein gar2 and similar proteins

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          A V+ D+ TG S+GFG+V F++ E   K
Sbjct: 29 ARVITDRETGRSRGFGYVDFESPEDAKK 56

This subfamily corresponds to the RRM1 of yeast protein gar2, a novel nucleolar protein required for 18S rRNA and 40S ribosomal subunit accumulation. It shares similar domain architecture with nucleolin from vertebrates and NSR1 from Saccharomyces cerevisiae. The highly phosphorylated N-terminal domain of gar2 is made up of highly acidic regions separated from each other by basic sequences, and contains multiple phosphorylation sites. The central domain of gar2 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The C-terminal RGG (or GAR) domain of gar2 is rich in glycine, arginine and phenylalanine residues. . Length = 76

>gnl|CDD|240757 cd12311, RRM_SRSF2_SRSF8, RNA recognition motif in serine/arginine-rich splicing factor SRSF2, SRSF8 and similar proteins

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 8  DKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQ 47
          D+ T  S+GF FV F +K +A D + + D   L+G  L +Q
Sbjct: 33 DRYTRESRGFAFVRFYDKRDAEDAMDAMDGKELDGRELRVQ 73

This subfamily corresponds to the RRM of SRSF2 and SRSF8. SRSF2, also termed protein PR264, or splicing component, 35 kDa (splicing factor SC35 or SC-35), is a prototypical SR protein that plays important roles in the alternative splicing of pre-mRNA. It is also involved in transcription elongation by directly or indirectly mediating the recruitment of elongation factors to the C-terminal domain of polymerase II. SRSF2 is exclusively localized in the nucleus and is restricted to nuclear processes. It contains a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a C-terminal RS domain rich in serine-arginine dipeptides. The RRM is responsible for the specific recognition of 5'-SSNG-3' (S=C/G) RNA. In the regulation of alternative splicing events, it specifically binds to cis-regulatory elements on the pre-mRNA. The RS domain modulates SRSF2 activity through phosphorylation, directly contacts RNA, and promotes protein-protein interactions with the spliceosome. SRSF8, also termed SRP46 or SFRS2B, is a novel mammalian SR splicing factor encoded by a PR264/SC35 functional retropseudogene. SRSF8 is localized in the nucleus and does not display the same activity as PR264/SC35. It functions as an essential splicing factor in complementing a HeLa cell S100 extract deficient in SR proteins. Like SRSF2, SRSF8 contains a single N-terminal RRM and a C-terminal RS domain. . Length = 73

>gnl|CDD|241026 cd12582, RRM2_hnRNPA3, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKI 60
          VM D+ +G  +GF FVTF + + VDK+     H +          + HN +VKK +
Sbjct: 32 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI----------NGHNCEVKKAL 77

This subgroup corresponds to the RRM2 of hnRNP A3, a novel RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE) independently of hnRNP A2 and participates in the trafficking of A2RE-containing RNA. hnRNP A3 can shuttle between the nucleus and the cytoplasm. It contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 80

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
          +     G SKGF FV F++ E  +K     +   L+G +L + 
Sbjct: 30 IVRDKDGKSKGFAFVEFESPEDAEKALEALNGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|241205 cd12761, RRM1_hnRNPA1, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) and similar proteins

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          VM D NT  S+GFGFVT+ + E VD   +   H ++G
Sbjct: 34 VMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDG 70

This subgroup corresponds to the RRM1 of hnRNP A1, also termed helix-destabilizing protein, or single-strand RNA-binding protein, or hnRNP core protein A1, and is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A1 has been characterized as a splicing silencer, often acting in opposition to an activating hnRNP H. It silences exons when bound to exonic elements in the alternatively spliced transcripts of c-src, HIV, GRIN1, and beta-tropomyosin. hnRNP A1 can shuttle between the nucleus and the cytoplasm. Thus, it may be involved in transport of cellular RNAs, including the packaging of pre-mRNA into hnRNP particles and transport of poly A+ mRNA from the nucleus to the cytoplasm. The cytoplasmic hnRNP A1 has high affinity with AU-rich elements, whereas the nuclear hnRNP A1 has high affinity with a polypyrimidine stretch bordered by AG at the 3' ends of introns. hnRNP A1 is also involved in the replication of an RNA virus, such as mouse hepatitis virus (MHV), through an interaction with the transcription-regulatory region of viral RNA. hnRNP A1, together with the scaffold protein septin 6, serves as host protein to form a complex with NS5b and viral RNA, and further plays important roles in the replication of Hepatitis C virus (HCV). hnRNP A1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. The RRMs of hnRNP A1 play an important role in silencing the exon and the glycine-rich domain is responsible for protein-protein interactions. . Length = 81

>gnl|CDD|241017 cd12573, RRM2_MSI2, RNA recognition motif 2 in RNA-binding protein Musashi homolog 2 (Musashi-2) and similar proteins

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSH 37
          +A +MFDK T   +GFGFVTF+N++ V+KV     H
Sbjct: 32 DAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFH 67

This subgroup corresponds to the RRM2 of Musashi-2 (also termed Msi2) which has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Musashi-2 contains two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 79

>gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
           +A VM D + G SKGFGFV F+N EA  K 
Sbjct: 29 TSAKVMKD-DEGKSKGFGFVNFENHEAAQKA 58

This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80

>gnl|CDD|240781 cd12335, RRM2_SF3B4, RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +M D +TG SKGF F+++ + EA D 
Sbjct: 34 IMRDPDTGNSKGFAFISYDSFEASDA 59

This subfamily corresponds to the RRM2 of SF3B4, also termed pre-mRNA-splicing factor SF3b 49 kDa (SF3b50), or spliceosome-associated protein 49 (SAP 49). SF3B4 is a component of the multiprotein complex splicing factor 3b (SF3B), an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA, and is involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B4 functions to tether U2 snRNP with pre-mRNA at the branch site during spliceosome assembly. It is an evolutionarily highly conserved protein with orthologs across diverse species. SF3B4 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It binds directly to pre-mRNA and also interacts directly and highly specifically with another SF3B subunit called SAP 145. . Length = 83

>gnl|CDD|178680 PLN03134, PLN03134, glycine-rich RNA-binding protein 4; Provisional

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS 54
           ++A V+ D+ TG S+GFGFV F ++ A     S  D   L G  + + P++   S
Sbjct: 62  VDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116

Length = 144

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 1   MNASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKKK 59
               ++ D+ TG S+GF FV F+++E+ +K +   +   LEG  L +Q +   +    + 
Sbjct: 143 KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSEL 202

Query: 60  IETKET-ASFSRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQ 107
               +   +                 Y+ +L  K     L   +     
Sbjct: 203 SNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGD 251

Length = 306

>gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKE 26
             +  D  TG SKG+GF+ F + E
Sbjct: 27 FVQLQRDPETGRSKGYGFIQFADAE 51

This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|241025 cd12581, RRM2_hnRNPA2B1, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) and similar proteins

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETK 63
          ++ D+ +G  +GFGFVTF + + VDK+     H + G          HN++V+K +  +
Sbjct: 32 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTING----------HNAEVRKALSRQ 80

This subgroup corresponds to the RRM2 of hnRNP A2/B1, an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A2/B1 also functions as a splicing factor that regulates alternative splicing of the tumor suppressors, such as BIN1, WWOX, the antiapoptotic proteins c-FLIP and caspase-9B, the insulin receptor (IR), and the RON proto-oncogene among others. Overexpression of hnRNP A2/B1 has been described in many cancers. It functions as a nuclear matrix protein involving in RNA synthesis and the regulation of cellular migration through alternatively splicing pre-mRNA. It may play a role in tumor cell differentiation. hnRNP A2/B1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 80

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
          ++ DK TG  KGF ++ F +K +V+     +     G ++ +
Sbjct: 31 ILCDKFTGQPKGFAYIEFLDKSSVENALLLNESEFRGRQIKV 72

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|241206 cd12762, RRM1_hnRNPA2B1, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) and similar proteins

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          VM D  +  S+GFGFVTF     VD   +   H ++G
Sbjct: 34 VMRDPASKRSRGFGFVTFSCMNEVDAAMAARPHTIDG 70

This subgroup corresponds to the RRM1 of hnRNP A2/B1 which is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A2/B1 also functions as a splicing factor that regulates alternative splicing of the tumor suppressors, such as BIN1, WWOX, the antiapoptotic proteins c-FLIP and caspase-9B, the insulin receptor (IR), and the RON proto-oncogene among others. Moreover, the overexpression of hnRNP A2/B1 has been described in many cancers. It functions as a nuclear matrix protein involving in RNA synthesis and the regulation of cellular migration through alternatively splicing pre-mRNA. It may play a role in tumor cell differentiation. hnRNP A2/B1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 81

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  D      LH+A  +G L+ ++ L E  GADVN+ D +G Y +  A      D+I+
Sbjct: 116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIK 174

Query: 289 YLVNSGAH 296
            L+  GA+
Sbjct: 175 LLLEKGAY 182

Length = 434

>gnl|CDD|240768 cd12322, RRM2_TDP43, RNA recognition motif 2 in TAR DNA-binding protein 43 (TDP-43) and similar proteins

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 15 KGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
          + F FVTF + E    +   + H+++G  + +
Sbjct: 37 RAFAFVTFADPEVAQSLCG-EDHIIKGVSVHV 67

This subfamily corresponds to the RRM2 of TDP-43 (also termed TARDBP), a ubiquitously expressed pathogenic protein whose normal function and abnormal aggregation are directly linked to the genetic disease cystic fibrosis, and two neurodegenerative disorders: frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). TDP-43 binds both DNA and RNA, and has been implicated in transcriptional repression, pre-mRNA splicing and translational regulation. TDP-43 is a dimeric protein with two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal glycine-rich domain. The RRMs are responsible for DNA and RNA binding; they bind to TAR DNA and RNA sequences with UG-repeats. The glycine-rich domain can interact with the hnRNP family proteins to form the hnRNP-rich complex involved in splicing inhibition. It is also essential for the cystic fibrosis transmembrane conductance regulator (CFTR) exon 9-skipping activity. . Length = 71

>gnl|CDD|240799 cd12353, RRM2_TIA1_like, RNA recognition motif 2 in granule-associated RNA binding proteins p40-TIA-1 and TIAR

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKE 26
          +A V+ D  TG SKG+GFV+F  KE
Sbjct: 28 DARVVKDMQTGKSKGYGFVSFVKKE 52

This subfamily corresponds to the RRM2 of nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR), both of which are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. TIA-1 and TIAR share high sequence similarity. They are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis. TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both, TIA-1 and TIAR, bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. Length = 75

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEA 27
          +  ++ D++TG  KG+GF  F++ E 
Sbjct: 27 SFRLVTDRDTGKPKGYGFCEFEDIET 52

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG4412|consensus	226		99.92
KOG4412|consensus	226		99.89
PTZ00458	90	acyl CoA binding protein; Provisional	99.89
cd00435	85	ACBP Acyl CoA binding protein (ACBP) binds thiol e	99.87
KOG0817|consensus	142		99.83
PF00887	87	ACBP: Acyl CoA binding protein; InterPro: IPR00058	99.82
PHA02791	284	ankyrin-like protein; Provisional	99.82
COG4281	87	ACB Acyl-CoA-binding protein [Lipid metabolism]	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG0509|consensus	600		99.79
PHA02875	413	ankyrin repeat protein; Provisional	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.79
KOG0509|consensus	600		99.79
KOG0508|consensus	615		99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02791	284	ankyrin-like protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02875	413	ankyrin repeat protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02859	209	ankyrin repeat protein; Provisional	99.77
KOG0514|consensus	452		99.77
KOG0508|consensus	615		99.76
PHA02795	437	ankyrin-like protein; Provisional	99.76
PHA02874	434	ankyrin repeat protein; Provisional	99.76
KOG0502|consensus	296		99.75
KOG0195|consensus	448		99.75
KOG0512|consensus	228		99.75
PHA02878	477	ankyrin repeat protein; Provisional	99.74
KOG0510|consensus	929		99.73
PHA02741	169	hypothetical protein; Provisional	99.73
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
PHA03100	480	ankyrin repeat protein; Provisional	99.73
PHA02874	434	ankyrin repeat protein; Provisional	99.72
PHA03100	480	ankyrin repeat protein; Provisional	99.72
KOG4177|consensus	1143		99.72
KOG4214|consensus	117		99.71
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.7
PHA02884	300	ankyrin repeat protein; Provisional	99.7
PHA02878	477	ankyrin repeat protein; Provisional	99.7
KOG0512|consensus	228		99.68
PHA03095	471	ankyrin-like protein; Provisional	99.68
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.68
PHA02798	489	ankyrin-like protein; Provisional	99.67
PHA02743	166	Viral ankyrin protein; Provisional	99.67
PHA03095	471	ankyrin-like protein; Provisional	99.67
PHA02795	437	ankyrin-like protein; Provisional	99.66
PHA02946	446	ankyin-like protein; Provisional	99.66
PHA02876	682	ankyrin repeat protein; Provisional	99.65
PHA02946	446	ankyin-like protein; Provisional	99.65
PHA02884	300	ankyrin repeat protein; Provisional	99.64
KOG4177|consensus	1143		99.64
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.63
PHA02736	154	Viral ankyrin protein; Provisional	99.62
PHA02876	682	ankyrin repeat protein; Provisional	99.62
KOG0510|consensus	929		99.62
PHA02798	489	ankyrin-like protein; Provisional	99.61
PHA02989	494	ankyrin repeat protein; Provisional	99.61
KOG0502|consensus	296		99.61
PHA02917	661	ankyrin-like protein; Provisional	99.61
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
PHA02917	661	ankyrin-like protein; Provisional	99.58
KOG0514|consensus	452		99.58
PHA02730	672	ankyrin-like protein; Provisional	99.57
KOG0515|consensus	752		99.57
PHA02730	672	ankyrin-like protein; Provisional	99.55
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.53
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
KOG0195|consensus	448		99.5
KOG0148|consensus	321		99.47
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.47
KOG0505|consensus	527		99.44
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.44
KOG0505|consensus	527		99.43
KOG0507|consensus	854		99.42
PHA02792	631	ankyrin-like protein; Provisional	99.42
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.41
PHA02792	631	ankyrin-like protein; Provisional	99.38
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.36
KOG0507|consensus	854		99.36
KOG1710|consensus	396		99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.3
KOG0515|consensus	752		99.3
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.29
KOG0145|consensus	360		99.24
KOG1710|consensus	396		99.23
KOG0506|consensus	622		99.2
KOG0818|consensus	669		99.19
KOG4214|consensus	117		99.19
KOG0131|consensus	203		99.19
PF13606	30	Ank_3: Ankyrin repeat	99.18
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.17
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.17
KOG0149|consensus	247		99.16
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.15
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.15
KOG0125|consensus	376		99.13
KOG4205|consensus	311		99.12
KOG0117|consensus	506		99.11
KOG3676|consensus	782		99.07
KOG4369|consensus	2131		99.05
smart00361	70	RRM_1 RNA recognition motif.	99.03
KOG0705|consensus	749		99.03
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.01
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.01
PF13606	30	Ank_3: Ankyrin repeat	98.99
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.99
KOG3676|consensus	782		98.98
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.95
KOG0111|consensus	298		98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.95
KOG0127|consensus	678		98.9
KOG4369|consensus	2131		98.86
KOG0522|consensus	560		98.84
KOG4207|consensus	256		98.81
KOG0783|consensus	1267		98.81
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.76
KOG0144|consensus	510		98.75
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.75
KOG0124|consensus	544		98.73
KOG0783|consensus	1267		98.66
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.63
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.61
KOG0511|consensus	516		98.6
KOG0226|consensus	290		98.59
KOG2384|consensus	223		98.56
KOG0108|consensus	435		98.53
KOG0123|consensus	369		98.53
KOG4205|consensus	311		98.53
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.49
KOG0113|consensus	335		98.46
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.46
KOG0520|consensus	975		98.46
smart00360	71	RRM RNA recognition motif.	98.45
KOG0126|consensus	219		98.44
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	98.41
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.41
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.39
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.38
KOG0123|consensus	369		98.38
KOG0782|consensus	1004		98.34
KOG0782|consensus	1004		98.32
KOG0520|consensus	975		98.32
PLN03120	260	nucleic acid binding protein; Provisional	98.31
KOG3609|consensus	822		98.28
KOG0521|consensus	785		98.27
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.25
PLN03213	759	repressor of silencing 3; Provisional	98.24
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.23
KOG0110|consensus	725		98.2
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.2
KOG4208|consensus	214		98.19
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.16
KOG3878|consensus	469		98.16
KOG0131|consensus	203		98.16
KOG0127|consensus	678		98.13
smart00362	72	RRM_2 RNA recognition motif.	98.11
KOG0147|consensus	549		98.1
COG0724	306	RNA-binding proteins (RRM domain) [General functio	98.08
PLN03121	243	nucleic acid binding protein; Provisional	97.98
KOG0705|consensus	749		97.89
KOG0521|consensus	785		97.89
KOG0818|consensus	669		97.89
KOG0511|consensus	516		97.84
KOG0147|consensus	549		97.82
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.79
KOG0506|consensus	622		97.79
KOG0144|consensus	510		97.77
KOG4212|consensus	608		97.76
KOG0121|consensus	153		97.75
KOG0130|consensus	170		97.72
KOG0107|consensus	195		97.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.67
KOG0109|consensus	346		97.61
KOG0117|consensus	506		97.61
KOG0145|consensus	360		97.49
KOG0522|consensus	560		97.48
KOG0415|consensus	479		97.37
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.31
KOG2384|consensus	223		97.31
KOG0124|consensus	544		97.3
KOG4209|consensus	231		97.29
KOG2505|consensus	591		97.27
KOG4211|consensus	510		97.22
KOG0148|consensus	321		97.16
KOG0110|consensus	725		96.8
KOG4206|consensus	221		96.36
KOG4661|consensus	940		96.25
KOG0114|consensus	124		95.92
KOG0105|consensus	241		95.26
KOG2505|consensus	591		94.98
KOG0109|consensus	346		94.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.83
KOG0106|consensus	216		94.29
KOG1995|consensus	351		94.25
KOG3609|consensus	822		93.87
KOG1457|consensus	284		93.39
KOG0146|consensus	371		93.22
KOG0153|consensus	377		92.59
KOG4210|consensus	285		92.34
KOG1548|consensus	382		92.11
KOG1548|consensus	382		91.89
KOG4211|consensus	510		91.5
KOG4454|consensus	267		91.44
KOG2314|consensus	698		91.44
KOG0120|consensus	500		91.28
KOG4210|consensus	285		91.25
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	90.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.52
KOG0116|consensus	419		90.51
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	89.65
KOG0106|consensus	216		89.21
KOG1190|consensus	492		88.18
KOG1365|consensus	508		86.77
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.6
KOG0132|consensus	894		86.33
KOG4849|consensus	498		86.14
KOG1365|consensus	508		85.68
KOG0128|consensus	881		85.4
KOG0533|consensus	243		85.34
PF07292	88	NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909	83.2
KOG0120|consensus	500		81.1
KOG2202|consensus	260		80.98
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	80.34

>KOG4412|consensus

Probab=99.92  E-value=1.9e-25  Score=169.63  Aligned_cols=153  Identities=24%  Similarity=0.311  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-C----CcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-D----ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~----~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..|...++++...-.    ...+..+++++.+++|.|++-|+..+..++. +    .+..|..||||||.|+..+..
T Consensus        10 ~~~~~~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~   85 (226)
T KOG4412|consen   10 ICENCEEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND   85 (226)
T ss_pred             HHhhchHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH
Confidence            445555555555443322    2356667778899999999999985444433 2    455688999999999887666


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      ++++-|....++++|..+..|.||||+|+..|+.+|+++|++ .|+.|+.+|..|.||||-|+..|.++++++|++.||.
T Consensus        86 evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   86 EVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            666666663699999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      +|.
T Consensus       165 ~n~  167 (226)
T KOG4412|consen  165 LNT  167 (226)
T ss_pred             CCc
Confidence            885

>KOG4412|consensus

Probab=99.89  E-value=1.4e-23  Score=159.48  Aligned_cols=102  Identities=26%  Similarity=0.360  Sum_probs=94.2

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      .|.+|+||||||+..++.+++++|....+..+|.+|..||||||+||..|+.++|+.|+.+.|+|+|..++.|.||||||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence            34589999999999888888888885478889999999999999999999999999999955999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      +..|+.+|+.+|++.||.|+++
T Consensus       114 agK~r~eIaqlLle~ga~i~~k  135 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIK  135 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCccc
Confidence            9999999999999999999874

>PTZ00458 acyl CoA binding protein; Provisional

Probab=99.89  E-value=6.4e-23  Score=141.44  Aligned_cols=84  Identities=35%  Similarity=0.766  Sum_probs=80.4

Q ss_pred             hHHHHHhhhhccccc--CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633           77 DRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV  154 (300)
Q Consensus        77 ~~F~~a~~~v~~~~~--~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l  154 (300)
                      +.|++|+.+|++++.  .++++++++||++|||+|.|+|++++||++++.+++||+||+++++|+.++||+.||++++++
T Consensus         3 ~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l   82 (90)
T PTZ00458          3 DLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIVTEL   82 (90)
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            469999999998776  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCch
Q psy633          155 DAGWED  160 (300)
Q Consensus       155 ~~~~~~  160 (300)
                      .+.|..
T Consensus        83 ~~~w~~   88 (90)
T PTZ00458         83 FPNWEK   88 (90)
T ss_pred             hhcccc
Confidence            999965

>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

Probab=99.87  E-value=5.3e-22  Score=136.73  Aligned_cols=83  Identities=39%  Similarity=0.748  Sum_probs=80.5

Q ss_pred             hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633           76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD  155 (300)
Q Consensus        76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~  155 (300)
                      +..|+.|+.+|+.++..++++++++||++|||++.|+|+.++|+++++.++.||++|.++++|+.++||+.||++++++.
T Consensus         2 ~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~   81 (85)
T cd00435           2 QEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELI   81 (85)
T ss_pred             hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          156 AGW  158 (300)
Q Consensus       156 ~~~  158 (300)
                      +.|
T Consensus        82 ~~~   84 (85)
T cd00435          82 AKY   84 (85)
T ss_pred             hcc
Confidence            876

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.

>KOG0817|consensus

Probab=99.83  E-value=1.1e-20  Score=140.78  Aligned_cols=87  Identities=44%  Similarity=0.775  Sum_probs=84.0

Q ss_pred             hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633           74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE  153 (300)
Q Consensus        74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~  153 (300)
                      -+...|+.|...++++...+++++++.||++|||+++|+|++++||++++.+++||++|+++++|+.++||+.||+++.+
T Consensus         4 ~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~   83 (142)
T KOG0817|consen    4 TLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYVEKVEE   83 (142)
T ss_pred             hHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCch
Q psy633          154 VDAGWED  160 (300)
Q Consensus       154 l~~~~~~  160 (300)
                      +++.|..
T Consensus        84 l~~~~~~   90 (142)
T KOG0817|consen   84 LIPKYGA   90 (142)
T ss_pred             HHHHhhc
Confidence            9999976

>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []

Probab=99.82  E-value=8.6e-21  Score=132.68  Aligned_cols=84  Identities=38%  Similarity=0.811  Sum_probs=77.0

Q ss_pred             hhhHHHHHhhhhccccc--CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633           75 MEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN  152 (300)
Q Consensus        75 l~~~F~~a~~~v~~~~~--~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~  152 (300)
                      |++.|+.|+.+++.++.  .+++++.++||++|||+++|+|+.++|+++++.++.||++|.++++|+.++||+.||++++
T Consensus         1 Le~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~   80 (87)
T PF00887_consen    1 LEEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVE   80 (87)
T ss_dssp             HHHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            57899999999999998  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC
Q psy633          153 EVDAGW  158 (300)
Q Consensus       153 ~l~~~~  158 (300)
                      ++.++|
T Consensus        81 ~~~~~~   86 (87)
T PF00887_consen   81 ELIPKY   86 (87)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998765

ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....

>PHA02791 ankyrin-like protein; Provisional

Probab=99.82  E-value=3e-20  Score=158.35  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCc-chHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNE-KNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~-~t~l~~a~~~~~~  216 (300)
                      ++..+..++++.|+....+     ++. ....+.+++|.|+..|+..+..++ ..   .+..+..| .||||+|+..+..
T Consensus        68 Aa~~g~~eiV~lLL~~Gad-----vn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         68 AATLEDTKIVKILLFSGMD-----DSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             HHHCCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH
Confidence            3444555555555543322     111 122345667777777765333322 22   12233444 4677777766666


Q ss_pred             HHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH-HHHHHhcCcHHHHHHHHHcC
Q psy633          217 MLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG-LDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~g  294 (300)
                      .++++|+. .+.+.  .| ..|.||||+|+..|+.+++++||+ +|+++|.+|..|.|| ||+|+..|+.++|++|+++|
T Consensus       142 eivk~LL~-~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        142 SIVSYFLS-EIPST--FDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             HHHHHHHh-cCCcc--cccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence            66666665 33322  23 247888888888888888888888 888888888888876 88888888888888888888


Q ss_pred             CCCCC
Q psy633          295 AHSSN  299 (300)
Q Consensus       295 a~~~~  299 (300)
                      |+++.
T Consensus       218 a~in~  222 (284)
T PHA02791        218 INIYS  222 (284)
T ss_pred             CCCcc
Confidence            88875

>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]

Probab=99.81  E-value=1.1e-19  Score=116.53  Aligned_cols=84  Identities=36%  Similarity=0.661  Sum_probs=79.6

Q ss_pred             hhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633           75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV  154 (300)
Q Consensus        75 l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l  154 (300)
                      +...|++|..-|+.++..+++++++++|++|||.++|+.+..+||++++.++.||+||..+++.+.+.|..+||.+|++|
T Consensus         2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeL   81 (87)
T COG4281           2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEEL   81 (87)
T ss_pred             hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCC
Q psy633          155 DAGW  158 (300)
Q Consensus       155 ~~~~  158 (300)
                      ....
T Consensus        82 kak~   85 (87)
T COG4281          82 KAKY   85 (87)
T ss_pred             Hhhc
Confidence            7653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=8.3e-19  Score=124.18  Aligned_cols=88  Identities=31%  Similarity=0.495  Sum_probs=77.1

Q ss_pred             HHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHH
Q psy633          207 YEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL  286 (300)
Q Consensus       207 l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~i  286 (300)
                      ||+|+..+...+.+.|.. .+.+++.    |.||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence            577777666667777766 6777766    8899999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCC
Q psy633          287 IEYLVNSGAHSSNT  300 (300)
Q Consensus       287 v~~Ll~~ga~~~~~  300 (300)
                      +++|+++|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0509|consensus

Probab=99.79  E-value=6.3e-20  Score=164.16  Aligned_cols=151  Identities=21%  Similarity=0.255  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      +|...-+++++.|++...+     ++.....-+.+|+|.|++.|+..+..++ ..   ....|..|.+++|.|+..++..
T Consensus        85 AAiNNrl~v~r~li~~gad-----vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen   85 AAINNRLDVARYLISHGAD-----VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA  159 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCC-----ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence            7778889999999988766     6666667788999999999998444433 33   5668999999999999877777


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      ++.+|+. .+++++.+|.+|+||||||+.+|+...+..||. .|+.++..| ..|.||||||+..|+..++.+|++.|++
T Consensus       160 ~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  160 LVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK-FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             HHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH-hcccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            7776666 589999999999999999999999988999999 999999998 9999999999999999999977788887


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      .+.
T Consensus       238 ~d~  240 (600)
T KOG0509|consen  238 LDK  240 (600)
T ss_pred             ccc
Confidence            654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3.8e-19  Score=161.31  Aligned_cols=149  Identities=17%  Similarity=0.114  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee-eeecccCC----cccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN-VSSMINDE----SQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~-~~~~~~~~----~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ++..+.+++++.|.......     +. ......+++|.|+..|... +..++...    +..+..|.||||+|+..+..
T Consensus        42 A~~~~~~~~v~~Ll~~ga~~-----~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~  115 (413)
T PHA02875         42 AMKFRDSEAIKLLMKHGAIP-----DV-KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL  115 (413)
T ss_pred             HHHcCCHHHHHHHHhCCCCc-----cc-cCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH
Confidence            34445556666655543320     00 1112334566666666542 22222211    12234456666666665555


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.||+
T Consensus       116 ~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~  193 (413)
T PHA02875        116 DIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN  193 (413)
T ss_pred             HHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            55555555 566666666666666666666666666666666 6666666666666666666666666666666666666


Q ss_pred             CC
Q psy633          297 SS  298 (300)
Q Consensus       297 ~~  298 (300)
                      ++
T Consensus       194 ~n  195 (413)
T PHA02875        194 ID  195 (413)
T ss_pred             CC
Confidence            55

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=5.4e-19  Score=145.12  Aligned_cols=151  Identities=18%  Similarity=0.078  Sum_probs=116.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccc--ce-eeeecccC---CcccC-cCcchHHHHHH
Q psy633          139 AKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKG--WV-NVSSMIND---ESQLD-DNEKNIYEWAK  211 (300)
Q Consensus       139 ~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~-~~~~~~~~---~~~~~-~~~~t~l~~a~  211 (300)
                      ...++..+.++.++.|+..-        + .....+.+++|.++..+  .. .+..++..   .+..+ ..|.||||+|+
T Consensus        25 L~~A~~~~~~~~vk~Li~~~--------n-~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKFV--------N-DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHhh--------h-ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            34577788888888876431        1 12334667889887654  33 33333333   23343 47899999876


Q ss_pred             hC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHH--CCCHHHHHHHHhhcCCCccccCCCCCcHHHH-HHhcCcHH
Q psy633          212 EG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACD--RGHLKVVQHLIEKCGADVNVTDSDGDYGLDY-AKAIEHTD  285 (300)
Q Consensus       212 ~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~-A~~~g~~~  285 (300)
                      ..   +...++++|.. .|++++.+|..|.||||+|+.  .++.+++++|++ .|++++.+|..|.||||. |+..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCHH
Confidence            42   35677888887 799999999999999999875  578999999999 999999999999999995 56788999


Q ss_pred             HHHHHHHcCCCCCCC
Q psy633          286 LIEYLVNSGAHSSNT  300 (300)
Q Consensus       286 iv~~Ll~~ga~~~~~  300 (300)
                      ++++|++.|++++.+
T Consensus       174 iv~~Ll~~Gadi~~~  188 (209)
T PHA02859        174 IFDFLTSLGIDINET  188 (209)
T ss_pred             HHHHHHHcCCCCCCC
Confidence            999999999999863

>KOG0509|consensus

Probab=99.79  E-value=2.4e-19  Score=160.52  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCccccceeeeecccC-C---cccC-cCcchHHHHHHhCC
Q psy633          141 SEAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E---SQLD-DNEKNIYEWAKEGK  214 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~---~~~~-~~~~t~l~~a~~~~  214 (300)
                      .+++.+-++.++.+++. ...     ++.. +.++-+.+|.|+.++...+.+++.+ .   +... ..+.||||||++.+
T Consensus        50 ~A~q~G~l~~v~~lve~~g~~-----v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   50 KATQYGELETVKELVESEGES-----VNNP-DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hHhhcchHHHHHHHHhhcCcC-----CCCC-CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            36777888888888776 222     2222 2366788999999988865555444 2   2222 45689999999999


Q ss_pred             HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      +..++.+|.+ +|++++.+|.+|.+|||+|+..||..+|-+||. .|+|+|.+|.+|+||||||+..|+...+++||..|
T Consensus       124 ~~~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            9999999999 899999999999999999999999999999999 89999999999999999999999988899999999


Q ss_pred             CCCCC
Q psy633          295 AHSSN  299 (300)
Q Consensus       295 a~~~~  299 (300)
                      +.+..
T Consensus       202 a~~~~  206 (600)
T KOG0509|consen  202 ASLLL  206 (600)
T ss_pred             ccccc
Confidence            98765

>KOG0508|consensus

Probab=99.79  E-value=4.9e-20  Score=159.10  Aligned_cols=155  Identities=21%  Similarity=0.273  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhhcCCCch-hhh-hhhccccc-ccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCC
Q psy633          142 EAMSKYIALLNEVDAGWED-KEQ-EEINWDES-QESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGK  214 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~-~~~-~~~~~~~~-~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~  214 (300)
                      +|+.+..++++.+.+.... .++ ..+.+|.. ..+..++..|+..||..+.+++..    .+..+.-..|||..||..+
T Consensus        49 aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG  128 (615)
T KOG0508|consen   49 AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDG  128 (615)
T ss_pred             ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcc
Confidence            4566677777777664222 111 22344433 355667888999999855444433    3344445568999999877


Q ss_pred             HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      +-+++++|.+ +|+|++..|+.|.|+||+||.+||.+|+++|++ .|+|+|.++..|+|+||.++..|+.+|+++|+.+|
T Consensus       129 ~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g  206 (615)
T KOG0508|consen  129 HLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG  206 (615)
T ss_pred             hhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCC
Confidence            7777777777 799999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCCC
Q psy633          295 AHSS  298 (300)
Q Consensus       295 a~~~  298 (300)
                      +-++
T Consensus       207 a~i~  210 (615)
T KOG0508|consen  207 AKID  210 (615)
T ss_pred             ceee
Confidence            8654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=137.69  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=90.5

Q ss_pred             cccCcCcchHHHHHHhCCHHH---HHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC
Q psy633          197 SQLDDNEKNIYEWAKEGKLDM---LVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD  272 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~---v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~  272 (300)
                      +..+..|+||||+|+..+...   ++++|.. .|++++.++ ..|.||||+|+..|+.+++++|+...|++++.+|..|.
T Consensus        51 ~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~  129 (166)
T PHA02743         51 HRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE  129 (166)
T ss_pred             hccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCC
Confidence            445778999999999866533   3677777 799999998 48999999999999999999999427999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          273 YGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       273 TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||||+|+..++.+++++|+++||+++.
T Consensus       130 tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743        130 TAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.78  E-value=7.1e-19  Score=149.96  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      -++..+++++++.|+.....     ++.   ....+++|.|+..|+..+..++ ..   .+..+..|.||||+|+..+..
T Consensus        36 ~Aa~~g~~eiv~~Ll~~ga~-----~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~  107 (284)
T PHA02791         36 YAIADNNVRLVCTLLNAGAL-----KNL---LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNM  107 (284)
T ss_pred             HHHHcCCHHHHHHHHHCcCC-----CcC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            46777888888888776543     111   1246889999998887333333 22   355678899999999998888


Q ss_pred             HHHHHHhhcCCCCccccCcCCc-hHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          217 MLVKQLTKLKDFNINQLDENGL-NCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      +++++|.. .|++++..+..|+ ||||+|+..|+.++|++|++ .+.+.  .| ..|.||||+|+..|+.+++++|+++|
T Consensus       108 eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~-~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g  183 (284)
T PHA02791        108 QTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPST--FDLAILLSCIHITIKNGHVDMMILLLDYM  183 (284)
T ss_pred             HHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHh-cCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            88888888 8999998888885 89999999999999999998 76543  23 35899999999999999999999999


Q ss_pred             CCCCC
Q psy633          295 AHSSN  299 (300)
Q Consensus       295 a~~~~  299 (300)
                      |+++.
T Consensus       184 Ad~n~  188 (284)
T PHA02791        184 TSTNT  188 (284)
T ss_pred             CCCCc
Confidence            99875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.7e-19  Score=141.16  Aligned_cols=127  Identities=17%  Similarity=0.122  Sum_probs=103.4

Q ss_pred             ccCCCCCccCcccccee-eeec---ccCC-----cccCcCcchHHHHHHhCCHH---HHHHHHhhcCCCCccccCc-CCc
Q psy633          172 QESGSKENEGQTKGWVN-VSSM---INDE-----SQLDDNEKNIYEWAKEGKLD---MLVKQLTKLKDFNINQLDE-NGL  238 (300)
Q Consensus       172 ~~~~~~~~~a~~~g~~~-~~~~---~~~~-----~~~~~~~~t~l~~a~~~~~~---~v~~ll~~~~~~~~~~~d~-~g~  238 (300)
                      ..+.+++|.|+..|... +...   ....     ...+..|.|+||+|+..+..   ++.++|.. .|++++.++. .|+
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~~~~~g~   93 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGKERVFGN   93 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCccccCCCCCC
Confidence            35678899999998631 1100   1111     23477899999999886653   45667777 7999999985 899


Q ss_pred             hHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       239 t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||||+|+..|+.+++++|+.+.|++++.+|..|.||||+|+..|+.+++++|+++||++++
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999735999999999999999999999999999999999999874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.77  E-value=9.8e-19  Score=158.62  Aligned_cols=152  Identities=12%  Similarity=0.080  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..+.++.++.|......     ........+.+++|.|+..|...+...+ ..   .+..+..|.||||+|+..+..
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKF-----ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCc-----ccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            36677778888888765432     1111223456889999999987443333 22   345677899999999998877


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC-cHHHHHHhcCcHHHHHHHHHcCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      .++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||||+|+..|+.+++++|+++||
T Consensus       149 ~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga  226 (413)
T PHA02875        149 KGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA  226 (413)
T ss_pred             HHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence            88888888 799999999999999999999999999999999 9999999998775 88999999999999999999999


Q ss_pred             CCCC
Q psy633          296 HSSN  299 (300)
Q Consensus       296 ~~~~  299 (300)
                      |+++
T Consensus       227 d~n~  230 (413)
T PHA02875        227 DCNI  230 (413)
T ss_pred             Ccch
Confidence            9875

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=138.51  Aligned_cols=123  Identities=19%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             cCCCCCccCccccceeeeecc----------cCCcccCcCcchHHHHHHhCCH----HHHHHHHhhcCCCCccccCc-CC
Q psy633          173 ESGSKENEGQTKGWVNVSSMI----------NDESQLDDNEKNIYEWAKEGKL----DMLVKQLTKLKDFNINQLDE-NG  237 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~----------~~~~~~~~~~~t~l~~a~~~~~----~~v~~ll~~~~~~~~~~~d~-~g  237 (300)
                      .+.+++|.|+..|...+...+          ...+..+..|.||||+|+..++    ..+.++|.. .|++++.++. .|
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~~~~~g   98 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQEMLEG   98 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCCCcCCC
Confidence            456779999999887332221          1235577889999999998765    467777777 7999999985 89


Q ss_pred             chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      +||||+|+..++.+++++|+...|++++.+|..|+||||+|+..++.+++++|++.++.
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999735999999999999999999999999999999987654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1e-18  Score=143.50  Aligned_cols=123  Identities=20%  Similarity=0.151  Sum_probs=103.4

Q ss_pred             CCCCccCccccce-eeeecccCCcccCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccccC-cCCchHHHHHHHC---
Q psy633          175 GSKENEGQTKGWV-NVSSMINDESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDR---  247 (300)
Q Consensus       175 ~~~~~~a~~~g~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~---  247 (300)
                      .++++.|+..|.. .+..++...+..+..|.||||+|+..+  ..+++++|++ .|++++.++ ..|+||||+|+..   
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~  100 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKN  100 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCcc
Confidence            4568889888886 444555556677889999999998643  5677788887 799999997 4799999998763   


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA--IEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++.+++++|++ .|+++|.+|..|.||||+|+.  .++.+++++|++.|++++.
T Consensus       101 ~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859        101 VEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             ccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            57999999999 999999999999999999976  4689999999999999875

>KOG0514|consensus

Probab=99.77  E-value=1.5e-18  Score=145.46  Aligned_cols=163  Identities=18%  Similarity=0.296  Sum_probs=123.6

Q ss_pred             HHHHHHcCCC--CHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC----CcccCc
Q psy633          129 YNAWNSLGQM--AKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND----ESQLDD  201 (300)
Q Consensus       129 ~~aw~~~~~~--~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~----~~~~~~  201 (300)
                      ...|..+...  +.-+-.+.|+..++.+.+...+   +-++..+ .++.+.+|.+.+.+.. +|+.++..    .+..+.
T Consensus       225 ~~eW~~~a~~s~a~pe~V~~~l~~f~als~~lL~---yvVNlaD-sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr  300 (452)
T KOG0514|consen  225 QHEWFTNSSTSSSDPEQVEDYLAYFEALSPPLLE---YVVNLAD-SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR  300 (452)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHhcChHHHH---HHhhhhc-CCCCeeeeeeecccchHHHHHHhccCccccccccc
Confidence            3457755543  4457788899999888766544   3344444 4566779999988876 55555443    566788


Q ss_pred             CcchHHHHHHh------CCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          202 NEKNIYEWAKE------GKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       202 ~~~t~l~~a~~------~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      .|+||++.++.      .+...|.+|...   .++|.+-.. |.|+|++|+.+|+.++|+.||. +|+|||.+|.+|.|+
T Consensus       301 AGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTA  376 (452)
T KOG0514|consen  301 AGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTA  376 (452)
T ss_pred             ccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHH
Confidence            89999988764      234445555444   578877655 9999999999999999999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633          275 LDYAKAIEHTDLIEYLVN-SGAHSSN  299 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~-~ga~~~~  299 (300)
                      |+.||.+||.|||++||. .++|+..
T Consensus       377 LMCA~EHGhkEivklLLA~p~cd~sL  402 (452)
T KOG0514|consen  377 LMCAAEHGHKEIVKLLLAVPSCDISL  402 (452)
T ss_pred             HhhhhhhChHHHHHHHhccCccccee
Confidence            999999999999999996 4777654

>KOG0508|consensus

Probab=99.76  E-value=8.8e-19  Score=151.39  Aligned_cols=157  Identities=22%  Similarity=0.239  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-----C--------cccCcCcchHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-----E--------SQLDDNEKNIY  207 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-----~--------~~~~~~~~t~l  207 (300)
                      .+|..+-+..+..+..+-...+..+ -......+.+++-.|++.|+..+..++.+     .        +.....|.+||
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~-l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIIS-LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHH-HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            3556666666666655433311111 22233455688999999999844433322     0        12345678899


Q ss_pred             HHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHH
Q psy633          208 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI  287 (300)
Q Consensus       208 ~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv  287 (300)
                      .+|+..+|.+|+++|.. .|+++|....-..|||..||.-||.++|++|++ +|+|++..|..|.|.||+||..||.+|+
T Consensus        89 WaAsaAGHl~vVk~L~~-~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLR-RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hHHhccCcHHHHHHHHH-hcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHH
Confidence            98888888889999998 789999998888999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q psy633          288 EYLVNSGAHSSNT  300 (300)
Q Consensus       288 ~~Ll~~ga~~~~~  300 (300)
                      ++|++.|||+|.+
T Consensus       167 qyLle~gADvn~k  179 (615)
T KOG0508|consen  167 QYLLEQGADVNAK  179 (615)
T ss_pred             HHHHHhCCCcchh
Confidence            9999999999853

>PHA02795 ankyrin-like protein; Provisional

Probab=99.76  E-value=2e-18  Score=153.16  Aligned_cols=145  Identities=23%  Similarity=0.115  Sum_probs=118.4

Q ss_pred             HHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-C----ccc-----CcCcchHHHHHHhCC
Q psy633          145 SKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E----SQL-----DDNEKNIYEWAKEGK  214 (300)
Q Consensus       145 ~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~----~~~-----~~~~~t~l~~a~~~~  214 (300)
                      .+++++++-|+..+.+     ++.   ....+++|.|+..|+..+..++.. .    +..     +..+.+++|.|+.++
T Consensus       128 ~n~~eiV~~LI~~GAD-----In~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~  199 (437)
T PHA02795        128 YVEIDIVDFMVDHGAV-----IYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT  199 (437)
T ss_pred             CCCHHHHHHHHHCCCC-----CCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC
Confidence            4678999999988876     211   122467888888776633333322 1    111     123678899999999


Q ss_pred             HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--------cHHH
Q psy633          215 LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--------HTDL  286 (300)
Q Consensus       215 ~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--------~~~i  286 (300)
                      ..+++++|.. +|+++|.+|..|.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|        |.++
T Consensus       200 ~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        200 VLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            9999999999 899999999999999999999999999999999 99999999999999999999998        5799


Q ss_pred             HHHHHHcCCCCCC
Q psy633          287 IEYLVNSGAHSSN  299 (300)
Q Consensus       287 v~~Ll~~ga~~~~  299 (300)
                      +++|+++|++++.
T Consensus       278 velLL~~gadI~~  290 (437)
T PHA02795        278 LEILLREPLSIDC  290 (437)
T ss_pred             HHHHHhCCCCCCc
Confidence            9999999999874

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.76  E-value=2.7e-18  Score=156.67  Aligned_cols=150  Identities=21%  Similarity=0.206  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc---------------------------
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN---------------------------  194 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~---------------------------  194 (300)
                      ++..+.+++++.|+....+     ++. ......++++.|+..|...+..++.                           
T Consensus        42 A~~~g~~~iv~~Ll~~Ga~-----~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~  115 (434)
T PHA02874         42 AIRSGDAKIVELFIKHGAD-----INH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGI  115 (434)
T ss_pred             HHHcCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcC
Confidence            6777788888888766543     111 1123345677777666642221111                           


Q ss_pred             CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       195 ~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      ..+..+..|.||||+|+..+...++++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.||
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~tp  193 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESP  193 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence            123457789999999999887778888888 799999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          275 LDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||+|+..|+.+++++|++.|++++.
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcC
Confidence            9999999999999999999998764

>KOG0502|consensus

Probab=99.75  E-value=1.6e-18  Score=136.09  Aligned_cols=102  Identities=26%  Similarity=0.267  Sum_probs=96.7

Q ss_pred             CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      .+..|+.|.|||.||+..++..++++|++ .|++++.......|+|.+|+..|..+||++||. ++.|+|..|.+|-|||
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPL  230 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCcee
Confidence            46678999999999999888888888888 899999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      -||++.||..|++.|++.|||+++
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCCccc
Confidence            999999999999999999999985

>KOG0195|consensus

Probab=99.75  E-value=4.5e-18  Score=138.71  Aligned_cols=101  Identities=27%  Similarity=0.336  Sum_probs=96.2

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +.-|..|.+|||||+.+++..++++|+. .|+.+|..+...-||||+|+..||.++|+.||+ ..+|+|+.+..|+||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehgntplh  105 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCchh
Confidence            4567789999999999999999999999 899999999988999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |||.-|+..|++=|+..||.+++
T Consensus       106 yacfwgydqiaedli~~ga~v~i  128 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNI  128 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeee
Confidence            99999999999999999999875

>KOG0512|consensus

Probab=99.75  E-value=5.9e-18  Score=128.12  Aligned_cols=94  Identities=24%  Similarity=0.262  Sum_probs=62.6

Q ss_pred             CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      .+.+|.+|.||||-|+++++..+++.|+. .|++++.+...||||||.||.-.+.+|+..||. +|+|||+......|||
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq-hgaDVnA~t~g~ltpL  167 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ-HGADVNAQTKGLLTPL  167 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchhHHHHHHh-ccCcccccccccchhh
Confidence            35566677777777777666666665555 577777777777777777777777777777777 7777777777777777


Q ss_pred             HHHHhcCcH-HHHHHHH
Q psy633          276 DYAKAIEHT-DLIEYLV  291 (300)
Q Consensus       276 ~~A~~~g~~-~iv~~Ll  291 (300)
                      |+||.+.+. ..+++|+
T Consensus       168 hlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  168 HLAAGNRNSRDTLELLL  184 (228)
T ss_pred             HHhhcccchHHHHHHHh
Confidence            777665433 3455554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.74  E-value=5.8e-18  Score=156.23  Aligned_cols=142  Identities=16%  Similarity=0.171  Sum_probs=112.0

Q ss_pred             HHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHHHHHHHhh
Q psy633          149 ALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTK  224 (300)
Q Consensus       149 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~  224 (300)
                      ++++.|.....+     ++..+...+.+++|.|+..|...+..++ ..   .+..+..|.||||.|+..+...++++|..
T Consensus       148 ~iv~~Ll~~gad-----in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        148 EITKLLLSYGAD-----INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             HHHHHHHHcCCC-----CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            466666655443     3333333367889999998887333333 22   34567789999999998888888888888


Q ss_pred             cCCCCccccCcCCchHHHHHHHC-CCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          225 LKDFNINQLDENGLNCLHWACDR-GHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       225 ~~~~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                       .|++++.+|..|.||||+|+.. ++.+++++|++ .|+++|.++. .|.||||+|  .++.+++++|+++|||++.
T Consensus       223 -~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        223 -NGASTDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS  295 (477)
T ss_pred             -cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC
Confidence             7999999999999999999975 68999999999 9999999886 799999999  5678999999999999886

>KOG0510|consensus

Probab=99.73  E-value=2.8e-18  Score=156.94  Aligned_cols=161  Identities=22%  Similarity=0.264  Sum_probs=129.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCchhhh--hhhcccccccCCCCCccCccccce-eeeec---ccCCcccCcCcchHHHHHH
Q psy633          138 MAKSEAMSKYIALLNEVDAGWEDKEQ--EEINWDESQESGSKENEGQTKGWV-NVSSM---INDESQLDDNEKNIYEWAK  211 (300)
Q Consensus       138 ~~~~~a~~~yi~~v~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~---~~~~~~~~~~~~t~l~~a~  211 (300)
                      ....++.+.+++.-......|.+..+  .+..-+++.++.+++|.|++.|.. .+..+   -...+.++.++.||||.|+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            34456777777777777777755433  344567777888999999999987 22222   2335667788999999876


Q ss_pred             h-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcc---ccCCCCCcHHHHHHhcCcHHHH
Q psy633          212 E-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN---VTDSDGDYGLDYAKAIEHTDLI  287 (300)
Q Consensus       212 ~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~---~~d~~g~TpL~~A~~~g~~~iv  287 (300)
                      . |....|.+||....-..+|..|..|.||||+|+..||..++++||+ .|++.+   ..|.+|.||||.|+..|+..+|
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHH
Confidence            6 6778888888842456778999999999999999999999999999 999887   4599999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q psy633          288 EYLVNSGAHSSN  299 (300)
Q Consensus       288 ~~Ll~~ga~~~~  299 (300)
                      ++|+.+||+++.
T Consensus       394 ~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  394 QKLISHGADIGV  405 (929)
T ss_pred             HHHHHcCCceee
Confidence            999999999853

>PHA02741 hypothetical protein; Provisional

Probab=99.73  E-value=2.5e-17  Score=130.84  Aligned_cols=101  Identities=26%  Similarity=0.425  Sum_probs=87.2

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhh-----cCCCCccccCcCCchHHHHHHHCCC----HHHHHHHHhhcCCCccccC
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTK-----LKDFNINQLDENGLNCLHWACDRGH----LKVVQHLIEKCGADVNVTD  268 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~-----~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~g~~~~~~d  268 (300)
                      ..+..|.|+||+|+..+...++++|..     ..+++++.+|..|+||||+|+..|+    .+++++|+. .|+++|.++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~~   94 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQE   94 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCCC
Confidence            456789999999988776666665532     0367899999999999999999999    589999999 999999998


Q ss_pred             C-CCCcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633          269 S-DGDYGLDYAKAIEHTDLIEYLVN-SGAHSSN  299 (300)
Q Consensus       269 ~-~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~  299 (300)
                      . .|+||||+|+..++.+++++|+. .|++++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~  127 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF  127 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc
Confidence            5 99999999999999999999998 5999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=2.9e-17  Score=160.39  Aligned_cols=148  Identities=20%  Similarity=0.214  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-c---CCcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-N---DESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~---~~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      +|..+..+.++.++....+     ++ ..+..+.+++|.|+..|+..+..++ .   +.+..|..|.||||+|+.+++..
T Consensus       532 Aa~~g~~~~l~~Ll~~G~d-----~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        532 VASTGNAALLEELLKAKLD-----PD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             HHHcCCHHHHHHHHHCCCC-----CC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            5666777777777766544     11 1233456778888888876333222 2   13456777888888888877777


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|.. .+...+  ...|.++||+|+..|+.+++++|++ +|+++|.+|.+|+||||+|+..|+.+++++|+++|||+
T Consensus       606 iv~~L~~-~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        606 IFRILYH-FASISD--PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             HHHHHHh-cCcccC--cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence            7777776 444332  2346678889999999999999999 99999999999999999999999999999999999999


Q ss_pred             CC
Q psy633          298 SN  299 (300)
Q Consensus       298 ~~  299 (300)
                      +.
T Consensus       682 ~~  683 (823)
T PLN03192        682 DK  683 (823)
T ss_pred             CC
Confidence            75

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.73  E-value=9.7e-18  Score=155.03  Aligned_cols=98  Identities=26%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCC------chHHHHHHHCCC--HHHHHHHHhhcCCCccccCCC
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG------LNCLHWACDRGH--LKVVQHLIEKCGADVNVTDSD  270 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~~v~~Ll~~~g~~~~~~d~~  270 (300)
                      .+..|.||||+|+..+...++++|.. .|++++..+..|      .||||+|+..|+  .+++++|++ .|+++|.+|..
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~  249 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVY  249 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCC
Confidence            34455555555555444445555544 455555555444      455555555555  555555555 55555555555


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          271 GDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      |.||||+|+..|+.+++++|++.|||++
T Consensus       250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n  277 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFVKYLLDLGANPN  277 (480)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.72  E-value=2e-17  Score=150.92  Aligned_cols=151  Identities=22%  Similarity=0.273  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.+......    .++ .......++++.|+..|...+.. ++..   .+..+..+.||||.|+..+...
T Consensus         8 ai~~gd~~~v~~ll~~~~~----~~n-~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          8 CIYSGDIEAIEKIIKNKGN----CIN-ISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHhcCCHHHHHHHHHcCCC----CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            5566677788777643211    011 12234568899999999984333 4333   3446677899999999887777


Q ss_pred             HHHHHhhcCC-----------------------CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          218 LVKQLTKLKD-----------------------FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       218 v~~ll~~~~~-----------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      ++++|.. .|                       ++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus        83 iv~~Ll~-~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g~tp  160 (434)
T PHA02874         83 IIKLLID-NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNGCYP  160 (434)
T ss_pred             HHHHHHH-CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCCCCH
Confidence            7777765 44                       5577788899999999999999999999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          275 LDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||+|+..|+.+++++|++.|++++.
T Consensus       161 Lh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        161 IHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHCCcHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.72  E-value=1.5e-17  Score=153.86  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCcc-----CccccceeeeecccC----CcccCcCcchHHHHHH-
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENE-----GQTKGWVNVSSMIND----ESQLDDNEKNIYEWAK-  211 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~-  211 (300)
                      ++..+.+++++.|+....+     ++. ......+++|.     |+..|...+...+.+    .+..+..|.||||+|+ 
T Consensus        42 A~~~~~~~ivk~Ll~~g~~-----~~~-~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~  115 (480)
T PHA03100         42 AKEARNIDVVKILLDNGAD-----INS-STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS  115 (480)
T ss_pred             hhccCCHHHHHHHHHcCCC-----CCC-ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh
Confidence            6667778888888876544     111 12234567888     888887643333322    3456778999999999 


Q ss_pred             -hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHH
Q psy633          212 -EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE  288 (300)
Q Consensus       212 -~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~  288 (300)
                       ..+...++++|.. .|++++..+..|.||||+|+..|  +.+++++|++ .|++++.+|..|.||||+|+..|+.++++
T Consensus       116 ~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~~~iv~  193 (480)
T PHA03100        116 KKSNSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGNIDVIK  193 (480)
T ss_pred             cccChHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCCHHHHH
Confidence             8888888988888 89999999999999999999999  9999999999 99999999999999999999999999999


Q ss_pred             HHHHcCCCCCC
Q psy633          289 YLVNSGAHSSN  299 (300)
Q Consensus       289 ~Ll~~ga~~~~  299 (300)
                      +|+++|++++.
T Consensus       194 ~Ll~~ga~~~~  204 (480)
T PHA03100        194 FLLDNGADINA  204 (480)
T ss_pred             HHHHcCCCccC
Confidence            99999999874

>KOG4177|consensus

Probab=99.72  E-value=2e-17  Score=159.52  Aligned_cols=150  Identities=22%  Similarity=0.232  Sum_probs=118.2

Q ss_pred             HHHHH-HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccCC----cccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSK-YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDE----SQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~-yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~t~l~~a~~~~~~  216 (300)
                      +|+.+ |.+....+.....+      ....+..+-+++|.++..|+..+..++.+.    +.....+.+++|.+..-+..
T Consensus       447 aa~~g~~~~~~~~l~~~g~~------~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v  520 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGAD------PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTV  520 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCC------cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhH
Confidence            45555 66666655544333      122334556779999999998766666552    33445678889988887777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .+.+.+.. +|++++.++..|.||||.||..|+..+|++||+ +|++++.+|+.|+||||.||..|+.+|+.+|+++||+
T Consensus       521 ~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  521 KVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             HHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            77777777 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ||.
T Consensus       599 vna  601 (1143)
T KOG4177|consen  599 VNA  601 (1143)
T ss_pred             CCc
Confidence            885

>KOG4214|consensus

Probab=99.71  E-value=3.4e-17  Score=110.99  Aligned_cols=89  Identities=28%  Similarity=0.476  Sum_probs=79.5

Q ss_pred             HHHHHh-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633          207 YEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD  285 (300)
Q Consensus       207 l~~a~~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~  285 (300)
                      +.|+.+ |...+|.+.+..  |.++|..- .|++|||+|+..|+.+++++|+. .|++++.+|..|-|||..|+..||..
T Consensus         6 ~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             HhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHH
Confidence            345544 678888888877  77887654 79999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCC
Q psy633          286 LIEYLVNSGAHSSN  299 (300)
Q Consensus       286 iv~~Ll~~ga~~~~  299 (300)
                      ||++||+.|||.++
T Consensus        82 cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   82 CVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHHcCcccce
Confidence            99999999999765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.70  E-value=4e-17  Score=154.21  Aligned_cols=147  Identities=12%  Similarity=0.055  Sum_probs=112.8

Q ss_pred             HHHHHHHhhcCCC-chhhhhhhcccccccCCCCCccCccccc--e-eeeecccC---CcccCcCcchHHHHHHhCCH--H
Q psy633          146 KYIALLNEVDAGW-EDKEQEEINWDESQESGSKENEGQTKGW--V-NVSSMIND---ESQLDDNEKNIYEWAKEGKL--D  216 (300)
Q Consensus       146 ~yi~~v~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~g~--~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~--~  216 (300)
                      ..+++++.|+... .+     ++......+.+++|.++..++  . .+..++..   .+..+..|.||||+|+..+.  .
T Consensus       153 v~leiVk~LLe~G~AD-----IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        153 IDLDLIKYMVDVGIVN-----LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             CCHHHHHHHHHCCCCC-----cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence            4667777777665 33     333324456678887654432  2 33333322   45677889999999988663  4


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHH-------------------------------------HHCCCHHHHHHHHhh
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWA-------------------------------------CDRGHLKVVQHLIEK  259 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A-------------------------------------~~~g~~~~v~~Ll~~  259 (300)
                      +++++|++ .|++++.+|..|+||||+|                                     +..|+.+++++|++ 
T Consensus       228 eIVklLLe-~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-  305 (764)
T PHA02716        228 SVIKKIIE-LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-  305 (764)
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-
Confidence            77888888 8999999999999999975                                     45688899999999 


Q ss_pred             cCCCccccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCCCC
Q psy633          260 CGADVNVTDSDGDYGLDYAKA--IEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       260 ~g~~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .|++++.+|..|+||||+|+.  .++.+++++|++.||+++.
T Consensus       306 ~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~  347 (764)
T PHA02716        306 PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE  347 (764)
T ss_pred             CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc
Confidence            999999999999999999864  4689999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1.3e-16  Score=136.26  Aligned_cols=88  Identities=23%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA  280 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~  280 (300)
                      .|.||||+|+..+..++.++|.. .|++++.. +..|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+.
T Consensus        69 ~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884         69 SKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Confidence            45666666665555555555555 56666654 3346666666666666666666666 666666666666666666666


Q ss_pred             cCcHHHHHHHH
Q psy633          281 IEHTDLIEYLV  291 (300)
Q Consensus       281 ~g~~~iv~~Ll  291 (300)
                      .++.+++.++.
T Consensus       147 ~~~~~~~~~~~  157 (300)
T PHA02884        147 ICNNFLAFMIC  157 (300)
T ss_pred             hCChhHHHHhc
Confidence            55555554443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1e-16  Score=148.02  Aligned_cols=101  Identities=23%  Similarity=0.298  Sum_probs=93.5

Q ss_pred             cccCcC-cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDN-EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~-~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +..+.. |.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpL  238 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPL  238 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHH
Confidence            445566 9999999999888888888888 899999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhc-CcHHHHHHHHHcCCCCCC
Q psy633          276 DYAKAI-EHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       276 ~~A~~~-g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+|+.. ++.+++++|+++|++++.
T Consensus       239 h~A~~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        239 HISVGYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCc
Confidence            999975 799999999999999975

>KOG0512|consensus

Probab=99.68  E-value=2e-16  Score=119.87  Aligned_cols=92  Identities=25%  Similarity=0.335  Sum_probs=83.6

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633          206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD  285 (300)
Q Consensus       206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~  285 (300)
                      .|.+|..+.+..|+.+|.. ...-+|.+|.+|.||||-|+.+||.+||..|+. +|++++++...||||||-||.-++.+
T Consensus        67 ~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchh
Confidence            4455566788888888888 666789999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCC
Q psy633          286 LIEYLVNSGAHSSN  299 (300)
Q Consensus       286 iv~~Ll~~ga~~~~  299 (300)
                      |+.+||++|||||.
T Consensus       145 va~~LLqhgaDVnA  158 (228)
T KOG0512|consen  145 VAGRLLQHGADVNA  158 (228)
T ss_pred             HHHHHHhccCcccc
Confidence            99999999999986

>PHA03095 ankyrin-like protein; Provisional

Probab=99.68  E-value=9.4e-17  Score=148.11  Aligned_cols=143  Identities=20%  Similarity=0.156  Sum_probs=106.7

Q ss_pred             HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccc--e-eeeecc---cCCcccCcCcchHHHHHHhCCH--HHHH
Q psy633          148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGW--V-NVSSMI---NDESQLDDNEKNIYEWAKEGKL--DMLV  219 (300)
Q Consensus       148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~--~-~~~~~~---~~~~~~~~~~~t~l~~a~~~~~--~~v~  219 (300)
                      +++++.|.....+     +... ...+.+++|.++....  . .+..++   ...+..+..|.||||+|+..+.  ..+.
T Consensus       167 ~~iv~~Ll~~g~~-----~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v  240 (471)
T PHA03095        167 VELLRLLIDAGAD-----VYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV  240 (471)
T ss_pred             HHHHHHHHHcCCC-----Cccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHH
Confidence            4555555554433     1111 3345566766554322  2 222222   2246678889999999988654  2455


Q ss_pred             HHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       220 ~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      .+|.. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.||||+|+..|+.+++++|++.+++++
T Consensus       241 ~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        241 LPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            55555 699999999999999999999999999999999 999999999999999999999999999999999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.68  E-value=1.2e-16  Score=151.09  Aligned_cols=144  Identities=18%  Similarity=0.115  Sum_probs=110.6

Q ss_pred             HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce---eeeecccC---CcccCcCcchHHHHHH----------
Q psy633          148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV---NVSSMIND---ESQLDDNEKNIYEWAK----------  211 (300)
Q Consensus       148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~---~~~~~~~~~t~l~~a~----------  211 (300)
                      +++++.|+....+     ++. ....+.+++|.|+..|..   .+..++..   .+..+..|.||||.|+          
T Consensus       192 ~eIVklLLe~GAD-----VN~-kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EI  265 (764)
T PHA02716        192 IDILEWLCNNGVN-----VNL-QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEI  265 (764)
T ss_pred             HHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHH
Confidence            5677777766544     222 223567889999998853   33334333   4557788999998652          


Q ss_pred             ---------------------------hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHH--CCCHHHHHHHHhhcCC
Q psy633          212 ---------------------------EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD--RGHLKVVQHLIEKCGA  262 (300)
Q Consensus       212 ---------------------------~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~g~  262 (300)
                                                 ..+...++++|++ .|++++.+|..|+||||+|+.  .++.+++++|++ .|+
T Consensus       266 vkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe-~GA  343 (764)
T PHA02716        266 TNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHE-YGN  343 (764)
T ss_pred             HHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHH-cCC
Confidence                                       2233456666777 799999999999999999864  568999999999 999


Q ss_pred             CccccCCCCCcHHHHHHh--------------cCcHHHHHHHHHcCCCCCC
Q psy633          263 DVNVTDSDGDYGLDYAKA--------------IEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       263 ~~~~~d~~g~TpL~~A~~--------------~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +++.+|..|+||||+|+.              .++.+++++|+++||+++.
T Consensus       344 DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        344 DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            999999999999999875              3789999999999999975

>PHA02798 ankyrin-like protein; Provisional

Probab=99.67  E-value=4.3e-16  Score=144.18  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             ccCcCcchHHHHHHhCC---HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC---HHHHHHHHhhcCCCccccC-CC
Q psy633          198 QLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNVTD-SD  270 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~---~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~g~~~~~~d-~~  270 (300)
                      ..+..|.||||+|+.++   ...+.++|.. .|++++..|..|.||||+|+..|+   .+++++|++ .|++++.++ ..
T Consensus       104 ~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~  181 (489)
T PHA02798        104 KKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKE  181 (489)
T ss_pred             CCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCcccccCcC
Confidence            34445555555555432   3344444444 455555555555555555555554   555555555 555555553 34


Q ss_pred             CCcHHHHHHhcCc----HHHHHHHHHcCCCCC
Q psy633          271 GDYGLDYAKAIEH----TDLIEYLVNSGAHSS  298 (300)
Q Consensus       271 g~TpL~~A~~~g~----~~iv~~Ll~~ga~~~  298 (300)
                      |.||||.+...+.    .+++++|+++|++++
T Consensus       182 ~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~  213 (489)
T PHA02798        182 KYDTLHCYFKYNIDRIDADILKLFVDNGFIIN  213 (489)
T ss_pred             CCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
Confidence            5555555554432    345555555555554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.67  E-value=3e-16  Score=124.14  Aligned_cols=98  Identities=21%  Similarity=0.422  Sum_probs=80.4

Q ss_pred             CcCcchHH-HHHHhCCHHHHH---HHHhhcCCCCccccCcCCchHHHHHHHCCCHHH---HHHHHhhcCCCccccC-CCC
Q psy633          200 DDNEKNIY-EWAKEGKLDMLV---KQLTKLKDFNINQLDENGLNCLHWACDRGHLKV---VQHLIEKCGADVNVTD-SDG  271 (300)
Q Consensus       200 ~~~~~t~l-~~a~~~~~~~v~---~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~---v~~Ll~~~g~~~~~~d-~~g  271 (300)
                      +..+.+.+ ++|..|+...+.   ++|.. .+..++..|..|+||||+|+..|+.++   +++|+. .|+++|.+| ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCC
Confidence            33444455 455667775444   35556 688899999999999999999998654   899999 999999998 589


Q ss_pred             CcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633          272 DYGLDYAKAIEHTDLIEYLVN-SGAHSSN  299 (300)
Q Consensus       272 ~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~  299 (300)
                      .||||+|+..|+.+++++|++ .|++++.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~  123 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGA  123 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccC
Confidence            999999999999999999995 7999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.67  E-value=5.9e-16  Score=142.82  Aligned_cols=145  Identities=19%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccc---ce-eeeecccC---CcccCcCcchHHHHHHhCC-HHHH
Q psy633          147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKG---WV-NVSSMIND---ESQLDDNEKNIYEWAKEGK-LDML  218 (300)
Q Consensus       147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~-~~~v  218 (300)
                      .++.++.|+....+     ++.. ...+.+++|.++..|   .. .+..++..   .+..+..|.||||+|+..+ ...+
T Consensus        26 ~~~~v~~Ll~~ga~-----vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         26 TVEEVRRLLAAGAD-----VNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             CHHHHHHHHHcCCC-----cccC-CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHH
Confidence            35666666655433     2222 233567788888877   43 23333322   4556778999999998877 6888


Q ss_pred             HHHHhhcCCCCccccCcCCchHHHHHH--HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHHHHHcC
Q psy633          219 VKQLTKLKDFNINQLDENGLNCLHWAC--DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEYLVNSG  294 (300)
Q Consensus       219 ~~ll~~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~g  294 (300)
                      +++|.. .|++++.+|..|.||||+|+  ..++.+++++|++ .|++++..|..|.||||+|+..+  +.+++++|++.|
T Consensus       100 v~lLl~-~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        100 IKLLIK-AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHHHHH-cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            888888 89999999999999999999  5678999999999 99999999999999999998865  689999999999


Q ss_pred             CCCCC
Q psy633          295 AHSSN  299 (300)
Q Consensus       295 a~~~~  299 (300)
                      ++++.
T Consensus       178 ~~~~~  182 (471)
T PHA03095        178 ADVYA  182 (471)
T ss_pred             CCCcc
Confidence            99864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.66  E-value=2.4e-16  Score=139.91  Aligned_cols=157  Identities=14%  Similarity=0.029  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcc--ccceee-eecccCCcccC-cCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQT--KGWVNV-SSMINDESQLD-DNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~~-~~~~~~~~~~~-~~~~t~l~~a~~~~~~~  217 (300)
                      +|...|-++++-+........-............+.+|.++.  .|+..+ ..++......+ ..+.|++|.|+..+..+
T Consensus        84 ~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~e  163 (437)
T PHA02795         84 FAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESS  163 (437)
T ss_pred             HhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHH
Confidence            566667778887777765522111111233445677888877  555533 34444433322 34579999999988888


Q ss_pred             HHHHHhhcCCCCc-ccc-----CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633          218 LVKQLTKLKDFNI-NQL-----DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       218 v~~ll~~~~~~~~-~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  291 (300)
                      ++++|+. .|++. +..     +..+.|++|.|+..++.+++++|++ +|+++|.+|..|.||||+|+..|+.+++++|+
T Consensus       164 IVk~Lls-~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL  241 (437)
T PHA02795        164 VVEFILN-CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL  241 (437)
T ss_pred             HHHHHHh-cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999998 78743 222     1347899999999999999999999 99999999999999999999999999999999


Q ss_pred             HcCCCCCCC
Q psy633          292 NSGAHSSNT  300 (300)
Q Consensus       292 ~~ga~~~~~  300 (300)
                      ++||+++.+
T Consensus       242 ~~GAdIN~~  250 (437)
T PHA02795        242 ENGANVNAV  250 (437)
T ss_pred             HCCCCCCCc
Confidence            999999863

>PHA02946 ankyin-like protein; Provisional

Probab=99.66  E-value=6.3e-16  Score=140.81  Aligned_cols=124  Identities=15%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             cCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccc-cCcCCchHHHHHH
Q psy633          173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQ-LDENGLNCLHWAC  245 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~-~d~~g~t~Lh~A~  245 (300)
                      .+.+++|.|+..|+..+..++ ..   .+..+..|.||||+|+..+  ..++.++|+. .|++++. .|..|.|||| ||
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHH-HH
Confidence            344566666666665322222 21   2345566666666655433  2344555555 5666663 4566666665 44


Q ss_pred             HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCCCC
Q psy633          246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       246 ~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~ga~~~~  299 (300)
                      ..|+.+++++|++ .|++++.+|..|+||||+|+..+  +.+++++|++.||+++.
T Consensus       149 ~~~~~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        149 TDPSERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             HCCChHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            5566666666666 66777777777777777765543  45677777777777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.65  E-value=4.7e-16  Score=149.57  Aligned_cols=101  Identities=26%  Similarity=0.308  Sum_probs=77.3

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC-HHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +..+..|.||||+|+..+...++++|.. .|++++..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+|||
T Consensus       369 n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpL  446 (682)
T PHA02876        369 NARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPL  446 (682)
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHH
Confidence            4456667777777776666666666666 677777777777777777765544 456778888 8888999999999999


Q ss_pred             HHHHhcC-cHHHHHHHHHcCCCCCC
Q psy633          276 DYAKAIE-HTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       276 ~~A~~~g-~~~iv~~Ll~~ga~~~~  299 (300)
                      |+|+..| +.+++++|++.||+++.
T Consensus       447 h~Aa~~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        447 HYACKKNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHCCCCCCC
Confidence            9999876 68999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=99.65  E-value=3.9e-16  Score=142.17  Aligned_cols=149  Identities=11%  Similarity=0.109  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce---eeeecccC---Cc-ccCcCcchHHHHHHhC
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV---NVSSMIND---ES-QLDDNEKNIYEWAKEG  213 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~---~~-~~~~~~~t~l~~a~~~  213 (300)
                      -++..+..++++.|+....+     ++. ....+.+++|.|+..+..   .+..++..   .+ ..+..|.||||+|..+
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAd-----in~-~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~  151 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGAD-----PNA-CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDP  151 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCC-----CCC-CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCC
Confidence            46778888999888876644     322 233556788877665532   22223322   22 3577899999977665


Q ss_pred             CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcC--cHHHHHH
Q psy633          214 KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE--HTDLIEY  289 (300)
Q Consensus       214 ~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g--~~~iv~~  289 (300)
                      + ..+.++|.. .|++++..|..|+||||+|+..+  +.+++++|++ .|++++.+|..|+||||+|+..|  +.+++++
T Consensus       152 ~-~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l  228 (446)
T PHA02946        152 S-ERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDIINL  228 (446)
T ss_pred             C-hHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence            5 456666666 69999999999999999987654  5799999999 99999999999999999999986  8899999


Q ss_pred             HHHcCCCCCC
Q psy633          290 LVNSGAHSSN  299 (300)
Q Consensus       290 Ll~~ga~~~~  299 (300)
                      |++ |++++.
T Consensus       229 Ll~-gadin~  237 (446)
T PHA02946        229 LLP-STDVNK  237 (446)
T ss_pred             HHc-CCCCCC
Confidence            995 899885

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.64  E-value=8.2e-16  Score=131.34  Aligned_cols=95  Identities=20%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccC----cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHH
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD----ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDY  277 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d----~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~  277 (300)
                      ..++|++|+..+...++++|++ .|++++.++    ..|.||||+|+..|+.+++++|++ +|+++|.++ ..|.||||+
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~  110 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYI  110 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHH
Confidence            3457788888887888888888 899999874    579999999999999999999999 999999974 689999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCC
Q psy633          278 AKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       278 A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..|+.+++++|++.||+++.
T Consensus       111 Aa~~~~~eivklLL~~GAdin~  132 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADINI  132 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999999999999999975

>KOG4177|consensus

Probab=99.64  E-value=2.7e-16  Score=151.85  Aligned_cols=148  Identities=20%  Similarity=0.163  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+..+.+.-+...|..      ...+....-+++|.++..+...+...+.+    .+..+..+.||||.|+..+...
T Consensus       481 aaq~Gh~~~~~llle~~~~------~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~  554 (1143)
T KOG4177|consen  481 AAQEGHTEVVQLLLEGGAN------DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD  554 (1143)
T ss_pred             hhccCCchHHHHhhhcCCc------cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence            4444555555555554422      12344455677888888888744444432    3556778899999999977777


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|++ +|++++.++..|+||||.||..|+.+|+.+|++ +|+++|..|.+|.||||+|...|+..++++|+..|+++
T Consensus       555 ~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  555 LVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            8888887 799999999999999999999999999999999 99999999999999999999999999999999999873

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.63  E-value=7e-16  Score=98.14  Aligned_cols=54  Identities=41%  Similarity=0.760  Sum_probs=46.7

Q ss_pred             CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633          237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       237 g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  291 (300)
                      |+||||+||..|+.+++++|++ .|+++|.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999 89999999999999999999999999999996

...

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.62  E-value=5e-16  Score=121.53  Aligned_cols=100  Identities=21%  Similarity=0.314  Sum_probs=79.5

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhc------CCCCccccCcCCchHHHHHHHCCCHH---HHHHHHhhcCCCcccc
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKL------KDFNINQLDENGLNCLHWACDRGHLK---VVQHLIEKCGADVNVT  267 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~------~~~~~~~~d~~g~t~Lh~A~~~g~~~---~v~~Ll~~~g~~~~~~  267 (300)
                      +..+..|.||||+|+..+.  +..++...      .+..++..|..|+||||+|+..|+.+   ++++|+. .|++++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCcccc
Confidence            4456789999999988664  22332210      01123456889999999999999874   6889999 99999999


Q ss_pred             CC-CCCcHHHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633          268 DS-DGDYGLDYAKAIEHTDLIEYLVN-SGAHSSN  299 (300)
Q Consensus       268 d~-~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~  299 (300)
                      |. .|+||||+|+..|+.+++++|++ .|++++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~  121 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI  121 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc
Confidence            84 99999999999999999999998 5999874

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.62  E-value=2e-15  Score=145.28  Aligned_cols=124  Identities=17%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             cCCCCCccCccccce--eeeecccC---CcccCcCcchHHHHHHhCC-HHHHHHHHhhcCCCCccccCcCCchHHHHHHH
Q psy633          173 ESGSKENEGQTKGWV--NVSSMIND---ESQLDDNEKNIYEWAKEGK-LDMLVKQLTKLKDFNINQLDENGLNCLHWACD  246 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~--~~~~~~~~---~~~~~~~~~t~l~~a~~~~-~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~  246 (300)
                      .+.+++|.|+..|..  .+..++..   .+..+..|.||||+|+..+ ...+.++|.. .|++++..|..|+||||+|+.
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHHHHH
Confidence            345667777766653  22222221   2345566777777766644 3455555555 566666666666677776665


Q ss_pred             C-CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          247 R-GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       247 ~-g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      . ++.+++.+|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       351 ~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        351 LDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             hCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            4 35666666666 667777666667777777766666666666666666654

>KOG0510|consensus

Probab=99.62  E-value=1.1e-15  Score=140.23  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC------------------CcccCcC
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND------------------ESQLDDN  202 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~------------------~~~~~~~  202 (300)
                      +|..+-.+.++-..+....+.+..+++... +..+++|.|...|+. .+...+..                  .+..|.+
T Consensus       194 aa~s~s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d  272 (929)
T KOG0510|consen  194 AARSGSKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND  272 (929)
T ss_pred             HHHhcchhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence            344333344443343222223333444443 445679999999987 22222211                  2445788


Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhh-cCCCccccCCCCCcHHHHHHhc
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK-CGADVNVTDSDGDYGLDYAKAI  281 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~g~~~~~~d~~g~TpL~~A~~~  281 (300)
                      |.||||+|++.|..+.+..|+. .|++++.++.++.||||.|+..|+.++|+-||+. .-...|..|-.|.||||+|++.
T Consensus       273 g~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPESVDNLLG-FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             CCchHHHHHHcCChhHHHHHHH-cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence            9999999999888888888888 8999999999999999999999999999999983 3457889999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCC
Q psy633          282 EHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       282 g~~~iv~~Ll~~ga~~~  298 (300)
                      ||..++++|+..||...
T Consensus       352 gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  352 GHDRVVQLLLNKGALFL  368 (929)
T ss_pred             CHHHHHHHHHhcChhhh
Confidence            99999999999999864

>PHA02798 ankyrin-like protein; Provisional

Probab=99.61  E-value=2.4e-15  Score=139.23  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce----eeeecccC---CcccCcCcchHHHHHHhCCH---H
Q psy633          147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV----NVSSMIND---ESQLDDNEKNIYEWAKEGKL---D  216 (300)
Q Consensus       147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~----~~~~~~~~---~~~~~~~~~t~l~~a~~~~~---~  216 (300)
                      .+++++.|+....+     ++..+ ..+.+++|.|+..|..    .+..++..   .+..+..|.||||+|+..+.   .
T Consensus        88 ~~~iv~~Ll~~Gad-----iN~~d-~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~  161 (489)
T PHA02798         88 MLDIVKILIENGAD-----INKKN-SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI  161 (489)
T ss_pred             HHHHHHHHHHCCCC-----CCCCC-CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence            46667666665543     22221 2345666666655431    22222221   23455666666666665443   4


Q ss_pred             HHHHHHhhcCCCCccccC-cCCchHHHHH
Q psy633          217 MLVKQLTKLKDFNINQLD-ENGLNCLHWA  244 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A  244 (300)
                      .++++|.+ .|++++..+ ..|.||||.+
T Consensus       162 ~vv~~Ll~-~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        162 EIIKLLLE-KGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             HHHHHHHH-hCCCcccccCcCCCcHHHHH
Confidence            55555555 455555443 2344444444

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.61  E-value=2.2e-15  Score=139.68  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             cccCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCc-cccCcCCchHHHHHHHC--CCHHHHHHHHhhcCCCccc-cCC
Q psy633          197 SQLDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNI-NQLDENGLNCLHWACDR--GHLKVVQHLIEKCGADVNV-TDS  269 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~-~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~~g~~~~~-~d~  269 (300)
                      +..+..|.||||.|+..   +..+++++|++ .|+++ +..|..|+||||+|+..  ++.+++++|++ .|++++. .+.
T Consensus       102 n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~  179 (494)
T PHA02989        102 NLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSL  179 (494)
T ss_pred             CCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccc
Confidence            33455566666654332   33445555555 56666 55666666666665432  45666666666 6666666 455


Q ss_pred             CCCcHHHHHHhcC----cHHHHHHHHHcCCCCCC
Q psy633          270 DGDYGLDYAKAIE----HTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       270 ~g~TpL~~A~~~g----~~~iv~~Ll~~ga~~~~  299 (300)
                      .|.||||+|+..+    +.+++++|+++||+++.
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~  213 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET  213 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence            6666666665543    56666666666666653

>KOG0502|consensus

Probab=99.61  E-value=2.3e-15  Score=118.41  Aligned_cols=119  Identities=24%  Similarity=0.266  Sum_probs=100.6

Q ss_pred             CCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHH
Q psy633          177 KENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV  252 (300)
Q Consensus       177 ~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  252 (300)
                      .++.++..|+. .++..+..   .+..+.-+++|+.++....+..++.++.+   ..+|.+|..|.|||+||+..||+.+
T Consensus        99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~v  175 (296)
T KOG0502|consen   99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPV  175 (296)
T ss_pred             hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHH
Confidence            35666777765 33333333   45666778899999988777776666655   6789999999999999999999999


Q ss_pred             HHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       253 v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |++||. .|++++.....-.|+|++|+..|..+||++||.++.|+|+
T Consensus       176 V~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv  221 (296)
T KOG0502|consen  176 VQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNV  221 (296)
T ss_pred             HHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce
Confidence            999999 9999999999999999999999999999999999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=99.61  E-value=1.9e-15  Score=143.06  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceee-----eecccCCcccC-cCcchHHHHHHhCCHHH
Q psy633          144 MSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV-----SSMINDESQLD-DNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       144 ~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~-----~~~~~~~~~~~-~~~~t~l~~a~~~~~~~  217 (300)
                      ..+++++++.|+....+     ++ .....+.++++.|+..|+..+     ..++......+ ....+++++|+.++..+
T Consensus        44 ~~~~~~~v~~Ll~~ga~-----v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e  117 (661)
T PHA02917         44 HCNNVEVVKLLLDSGTN-----PL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVD  117 (661)
T ss_pred             hcCcHHHHHHHHHCCCC-----cc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHH
Confidence            33568899888877655     22 234456788999999987532     23332211111 12236778888888888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHH--HHCCCHHHHHHHHhhcCCCccccCC---CC-----------CcHHHHHHh-
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWA--CDRGHLKVVQHLIEKCGADVNVTDS---DG-----------DYGLDYAKA-  280 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~~g~~~~~~d~---~g-----------~TpL~~A~~-  280 (300)
                      ++++|+. .|++++.+|..|+||||+|  +..|+.+++++||+ .|+++|.+|.   .|           .||||+|+. 
T Consensus       118 ~vk~Ll~-~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~  195 (661)
T PHA02917        118 LIKVLVE-HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIIS  195 (661)
T ss_pred             HHHHHHH-cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccccccccccccHHHHHHhh
Confidence            8888888 8999999999999999954  46789999999999 9999987654   34           599999986 


Q ss_pred             ----------cCcHHHHHHHHHcCCCCCC
Q psy633          281 ----------IEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       281 ----------~g~~~iv~~Ll~~ga~~~~  299 (300)
                                .++.+++++|+++|||++.
T Consensus       196 ~~~~~~~~~~~~~~eiv~~Li~~Gadvn~  224 (661)
T PHA02917        196 HLYSESDTRAYVRPEVVKCLINHGIKPSS  224 (661)
T ss_pred             cccccccccccCcHHHHHHHHHCCCCccc
Confidence                      5689999999999999985

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=2.9e-15  Score=138.86  Aligned_cols=97  Identities=19%  Similarity=0.266  Sum_probs=81.9

Q ss_pred             ccCcCcchHHHHHHhCC------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCC
Q psy633          198 QLDDNEKNIYEWAKEGK------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG  271 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g  271 (300)
                      ..+..+.++||.+..++      ...+..+|..  ++++|.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|
T Consensus       213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G  289 (494)
T PHA02989        213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDG  289 (494)
T ss_pred             ccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCC
Confidence            34456778887665432      3455666666  68889999999999999999999999999999 999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          272 DYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       272 ~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      +||||+|+..|+.+++++|++.+...
T Consensus       290 ~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        290 DTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            99999999999999999999987653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=1.3e-15  Score=97.42  Aligned_cols=51  Identities=43%  Similarity=0.677  Sum_probs=33.9

Q ss_pred             CCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       227 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      ..+++..|..|.||||+||..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            48999999999999999999999999999998 9999999999999999997

>PHA02917 ankyrin-like protein; Provisional

Probab=99.58  E-value=8.1e-15  Score=138.87  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=91.9

Q ss_pred             CccCccccceeeee-cccC---CcccCcCcchHHHHH--HhCCHHHHHHHHhhcCCCCccccCc---CC-----------
Q psy633          178 ENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWA--KEGKLDMLVKQLTKLKDFNINQLDE---NG-----------  237 (300)
Q Consensus       178 ~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a--~~~~~~~v~~ll~~~~~~~~~~~d~---~g-----------  237 (300)
                      ++.|+..|+..+.. ++..   .+..+..|.||||.+  +..++.+++++|++ .|++++..|.   .|           
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCcccccccccccccccccccccc
Confidence            34455555542222 2222   355677899999843  45678889999998 8999986653   24           


Q ss_pred             chHHHHHHH-----------CCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH--HHHHHHHHcCCCCC
Q psy633          238 LNCLHWACD-----------RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT--DLIEYLVNSGAHSS  298 (300)
Q Consensus       238 ~t~Lh~A~~-----------~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~ga~~~  298 (300)
                      .||||+|+.           .++.+++++|++ .|+++|.+|..|.||||+|+.+|+.  ++|++|++ |++++
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence            599999986           568999999999 9999999999999999999999985  79999985 88764

>KOG0514|consensus

Probab=99.58  E-value=5.7e-15  Score=124.20  Aligned_cols=93  Identities=24%  Similarity=0.309  Sum_probs=86.8

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      -...|+|+|+.|...+...+++.|+. .|+++|.+|.+|.|+|+.||.+||.+|+++||...++|+...|.+|.|+|++|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            34578999999999888888888888 79999999999999999999999999999999878999999999999999999


Q ss_pred             HhcCcHHHHHHHHH
Q psy633          279 KAIEHTDLIEYLVN  292 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~  292 (300)
                      ...||.+|.-+|..
T Consensus       415 leagh~eIa~mlYa  428 (452)
T KOG0514|consen  415 LEAGHREIAVMLYA  428 (452)
T ss_pred             HhcCchHHHHHHHH
Confidence            99999999998875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=134.89  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             HHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccc-----eeeeecccC-----CcccCcCcchHHHH---HHhCC
Q psy633          148 IALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGW-----VNVSSMIND-----ESQLDDNEKNIYEW---AKEGK  214 (300)
Q Consensus       148 i~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~-----~~~~~~~~~-----~~~~~~~~~t~l~~---a~~~~  214 (300)
                      +++++-|+..+.+     ++..  ..+.+++|.|+..+.     ..+..++..     .+..+..|.|+||.   +...+
T Consensus       359 ieIvelLIs~GAd-----IN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        359 IPILRCMLDNGAT-----MDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             HHHHHHHHHCCCC-----CCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcc
Confidence            4566677766655     3332  456788997776653     233333322     34456789999984   33222


Q ss_pred             ---------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhc--C
Q psy633          215 ---------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAI--E  282 (300)
Q Consensus       215 ---------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~--g  282 (300)
                               ...+.++|+. +|+++|.+|..|.||||+|+..++.+++++|++ +|+++|.+|. .|.||||+|+..  +
T Consensus       432 ~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~  509 (672)
T PHA02730        432 CGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRREN  509 (672)
T ss_pred             ccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcC
Confidence                     1245788888 899999999999999999999999999999999 9999999996 699999999874  7


Q ss_pred             cHHHHHHHHHcCCCCC
Q psy633          283 HTDLIEYLVNSGAHSS  298 (300)
Q Consensus       283 ~~~iv~~Ll~~ga~~~  298 (300)
                      +.+++++|+++|++++
T Consensus       510 ~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        510 KTKLVDLLLSYHPTLE  525 (672)
T ss_pred             cHHHHHHHHHcCCCHH
Confidence            9999999999999764

>KOG0515|consensus

Probab=99.57  E-value=6.7e-15  Score=129.01  Aligned_cols=89  Identities=35%  Similarity=0.493  Sum_probs=80.6

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633          206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD  285 (300)
Q Consensus       206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~  285 (300)
                      +|.+|..|.++.|...+-+  -.|+...+..|-|+||-|+..||.+||++||+ +|++||+.|.+||||||.|+.+++..
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchH
Confidence            3456677888877777766  56788899999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHcCCCC
Q psy633          286 LIEYLVNSGAHS  297 (300)
Q Consensus       286 iv~~Ll~~ga~~  297 (300)
                      +++.|++.||-|
T Consensus       631 ~ckqLVe~Gaav  642 (752)
T KOG0515|consen  631 MCKQLVESGAAV  642 (752)
T ss_pred             HHHHHHhccceE
Confidence            999999999865

>PHA02730 ankyrin-like protein; Provisional

Probab=99.55  E-value=2.9e-14  Score=132.71  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             ccCcCcchHHHHHHhCC---HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC--CHHHHHHHHhhcCC--CccccCCC
Q psy633          198 QLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGA--DVNVTDSD  270 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~---~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~g~--~~~~~d~~  270 (300)
                      ..|..|.||||+|+.++   +.+++++|++ .|++++.+|..|+||||+|+..+  +.++|++|++ .|+  +++..++.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~-~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS-SYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh-cCCCCCccccccc
Confidence            56778999999999875   4788898888 89999999999999999999977  7999999999 855  55888888


Q ss_pred             CCcHHHHHHh--cCcHHHHHHHHH-cCCCCC
Q psy633          271 GDYGLDYAKA--IEHTDLIEYLVN-SGAHSS  298 (300)
Q Consensus       271 g~TpL~~A~~--~g~~~iv~~Ll~-~ga~~~  298 (300)
                      +.||||.++.  +++.+++++|++ .|+|++
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~  144 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS  144 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChh
Confidence            9999999988  899999999997 677765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.53  E-value=4.4e-14  Score=138.20  Aligned_cols=120  Identities=17%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             CCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633          176 SKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK  251 (300)
Q Consensus       176 ~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  251 (300)
                      .+++.|+..|... +..++..   .+..|..|.||||+|+..++..++++|.. .|++++.+|..|+||||+|+..||.+
T Consensus       527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            4466677777652 2223322   45567778888888888777778888877 78888888888888888888888888


Q ss_pred             HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++++|+. .++..+.  ..|.||||+|+..|+.+++++|+++|+|+|.
T Consensus       606 iv~~L~~-~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~  650 (823)
T PLN03192        606 IFRILYH-FASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDS  650 (823)
T ss_pred             HHHHHHh-cCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence            8888887 7765543  4566888889999999999999999999875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.52  E-value=1.6e-14  Score=140.17  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCc-cCccccceeeeecccCCcccCcCcchHHHHHHhCCHHHH-
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN-EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML-  218 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~g~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~v-  218 (300)
                      .++.++.++.++.++.....   .+++.. +..+.+++| .|+.+++..+..++......+..|.||||+|+.++...+ 
T Consensus        23 ~A~~~g~~~~v~~lL~~~~~---~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~   98 (743)
T TIGR00870        23 PAAERGDLASVYRDLEEPKK---LNINCP-DRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVE   98 (743)
T ss_pred             HHHHcCCHHHHHHHhccccc---cCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHH
Confidence            47888888888888765221   122222 234567788 788887775555554433367789999999998655443 


Q ss_pred             --HHHHhhcCCCC------cc----ccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC--------------CCCC
Q psy633          219 --VKQLTKLKDFN------IN----QLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD--------------SDGD  272 (300)
Q Consensus       219 --~~ll~~~~~~~------~~----~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d--------------~~g~  272 (300)
                        ..++.. .+..      ++    ..+..|.||||+||.+|+.++|++|++ .|++++.++              ..|.
T Consensus        99 ~ll~~l~~-~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~  176 (743)
T TIGR00870        99 AILLHLLA-AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGE  176 (743)
T ss_pred             HHHHHHhh-cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccc
Confidence              444443 2211      11    123469999999999999999999999 999999764              2589


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          273 YGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       273 TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||||+|+..|+.+++++|++.|||++.
T Consensus       177 tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       177 SPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence            999999999999999999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=8.9e-14  Score=132.50  Aligned_cols=90  Identities=30%  Similarity=0.447  Sum_probs=78.5

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHH
Q psy633          206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD  285 (300)
Q Consensus       206 ~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~  285 (300)
                      ++++|..|+... +++|+. .|+++|.+|..|+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+
T Consensus        86 L~~aa~~G~~~~-vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         86 LCQLAASGDAVG-ARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHcCCHHH-HHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            334455555555 555555 699999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCCC
Q psy633          286 LIEYLVNS-------GAHSS  298 (300)
Q Consensus       286 iv~~Ll~~-------ga~~~  298 (300)
                      ++++|+++       ||+++
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~  182 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAK  182 (664)
T ss_pred             HHHHHHhCCCcccccCCCCC
Confidence            99999998       77654

>KOG0195|consensus

Probab=99.50  E-value=1.3e-14  Score=118.65  Aligned_cols=123  Identities=24%  Similarity=0.356  Sum_probs=97.4

Q ss_pred             CCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          174 SGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       174 ~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      +-+++|.++..|+..+..++..    .+..+....||||.|+..++..++..|+. ..+++|..+..|+||||+||.-|.
T Consensus        34 gfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             CcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCchhhhhhhcH
Confidence            4467999999999855444433    35556667799999988777777776666 689999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      ..+++-|+. +|+.++..+..|.|||..|.-.-...+.++--+.|-+++
T Consensus       113 dqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  113 DQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999 999999999999999999854433333444445677665

>KOG0148|consensus

Probab=99.47  E-value=5e-14  Score=113.71  Aligned_cols=104  Identities=21%  Similarity=0.362  Sum_probs=84.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH-
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF-   79 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F-   79 (300)
                      +++|++|..|++|||||||.|-..++|++||. |+|++|++|.|+..+|+.|..+.-.+.            ...++-| 
T Consensus        91 ~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~------------ltfdeV~N  158 (321)
T KOG0148|consen   91 DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP------------LTFDEVYN  158 (321)
T ss_pred             cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC------------ccHHHHhc
Confidence            68999999999999999999999999999999 999999999999999997763221111            1112222 


Q ss_pred             ----HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC
Q psy633           80 ----NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK  117 (300)
Q Consensus        80 ----~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~  117 (300)
                          +.+..|++++...++++.+++.|..|+++....+-.++
T Consensus       159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q  200 (321)
T KOG0148|consen  159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ  200 (321)
T ss_pred             cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence                22334899999999999999999999999988876554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.47  E-value=9.3e-13  Score=98.37  Aligned_cols=97  Identities=32%  Similarity=0.472  Sum_probs=73.1

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      +..|.|+||.|+..+...+.+.|.. .+.+.+..+..|.||||+|+..+..+++++|+. .|++++..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHH
Confidence            3567788887777666666666666 566667777778888888888888888888887 77777777777888888888


Q ss_pred             hcCcHHHHHHHHHcCCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~~  298 (300)
                      ..++.+++++|++.|.+++
T Consensus        82 ~~~~~~~~~~L~~~~~~~~  100 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVN  100 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCc
Confidence            8888888888887775544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505|consensus

Probab=99.44  E-value=5.4e-14  Score=123.96  Aligned_cols=149  Identities=21%  Similarity=0.290  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC-C---ccc------------CcCcch
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E---SQL------------DDNEKN  205 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~---~~~------------~~~~~t  205 (300)
                      .+.....++|..++.....     ++ ..+...-+++|.|+..|+..+...+.. .   ...            +....+
T Consensus        80 ~~id~~~e~v~~l~e~ga~-----Vn-~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~  153 (527)
T KOG0505|consen   80 ACIDDNLEMVKFLVENGAN-----VN-AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLD  153 (527)
T ss_pred             HHhcccHHHHHHHHHhcCC-----cc-ccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhH
Confidence            3444555777777766544     11 123455678999999999855444333 0   111            112222


Q ss_pred             HHHHHH--hCC-------------HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC
Q psy633          206 IYEWAK--EGK-------------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD  270 (300)
Q Consensus       206 ~l~~a~--~~~-------------~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~  270 (300)
                      .+..+.  .|-             +..+...+.  .|...+..+..|.|+||.|+.+|..++.++||. +|.+++.+|.+
T Consensus       154 ~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~--~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~d  230 (527)
T KOG0505|consen  154 VLETEMARQGIDIEAARKAEEQTMLDDARQWLN--AGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYD  230 (527)
T ss_pred             HHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh--ccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCccccccc
Confidence            222221  111             122333333  377888888889999999999999999999999 99999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          271 GDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||||||.|+.-|+.+++++|+++||+.+.
T Consensus       231 gWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  231 GWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             CCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            99999999999999999999999999764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.44  E-value=8.2e-14  Score=98.41  Aligned_cols=64  Identities=36%  Similarity=0.561  Sum_probs=57.6

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD  268 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d  268 (300)
                      |.||||+|+..+...+.++|.+ .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEIVKLLLE-HGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH-TTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC
Confidence            7789999999888888998888 899999999999999999999999999999999 999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505|consensus

Probab=99.43  E-value=1.7e-13  Score=120.81  Aligned_cols=95  Identities=31%  Similarity=0.455  Sum_probs=86.9

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI  281 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~  281 (300)
                      ..-.+|.+++.++..++..+|..  |++++..+.+|.|+||-+|.-.+.+||++|++ +|++||..|+.||||||.|+.+
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             chHHHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHH-hcCCccccccccCCcchhhccc
Confidence            33446667778999999998877  78899999999999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCC
Q psy633          282 EHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       282 g~~~iv~~Ll~~ga~~~~  299 (300)
                      ||..|+++|+++||++.+
T Consensus       117 g~~~i~~~li~~gA~~~a  134 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLA  134 (527)
T ss_pred             ccHHHHHHHHHhhhhhhh
Confidence            999999999999998654

>KOG0507|consensus

Probab=99.42  E-value=1.6e-13  Score=125.38  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=55.7

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..|.+|.|+||.|+.+++..+.++|++ +.+.++..|..|.+|||+|+..|+.+++++|+. .+..+|+.+-.|.||||
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAVNIENETPLH  120 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcccccCcCccc
Confidence            4444555555555555555555555555 445555555555555555555555555555555 55555555555555555


Q ss_pred             HHHhcCcHHHHHHHHHcCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      .|+++||.+++.+|+.+|+|+
T Consensus       121 laaqhgh~dvv~~Ll~~~adp  141 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNADP  141 (854)
T ss_pred             hhhhhcchHHHHHHHhcCCCc
Confidence            555555555555555555554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.42  E-value=7.8e-13  Score=122.07  Aligned_cols=142  Identities=16%  Similarity=0.111  Sum_probs=103.1

Q ss_pred             HHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC---CcccCcC--cchHHHHHHhCCHH---H
Q psy633          147 YIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND---ESQLDDN--EKNIYEWAKEGKLD---M  217 (300)
Q Consensus       147 yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~--~~t~l~~a~~~~~~---~  217 (300)
                      .++.++.++.......        .......++.|+..|.. .+..++..   .+..+..  +.||||+|..++..   .
T Consensus       320 ~ieiIK~LId~Ga~~~--------r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~  391 (631)
T PHA02792        320 YINVIKCMIDEGATLY--------RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLS  391 (631)
T ss_pred             cHHHHHHHHHCCCccc--------cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHH
Confidence            3578888877765510        11122234556666655 33333332   2334444  46899988776544   3


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHh----------cCcHHHH
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA----------IEHTDLI  287 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~----------~g~~~iv  287 (300)
                      +.++|.. .|+++|.+|..|+||||+|+..++.+++++|++ .|+++|.+|..|.||||+|+.          ..+.+++
T Consensus       392 IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il  469 (631)
T PHA02792        392 ILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKIL  469 (631)
T ss_pred             HHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4666777 799999999999999999999999999999999 999999999999999999976          2235679


Q ss_pred             HHHHHcCCCCC
Q psy633          288 EYLVNSGAHSS  298 (300)
Q Consensus       288 ~~Ll~~ga~~~  298 (300)
                      ++|+++|.+++
T Consensus       470 ~lLLs~~p~i~  480 (631)
T PHA02792        470 EIILSKLPTIE  480 (631)
T ss_pred             HHHHhcCCChh
Confidence            99999998764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.41  E-value=2.3e-12  Score=106.55  Aligned_cols=95  Identities=28%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             cccCcCcchHHHHHHhCCH-----HHHHHHHhhcCCC---CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC
Q psy633          197 SQLDDNEKNIYEWAKEGKL-----DMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD  268 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~-----~~v~~ll~~~~~~---~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d  268 (300)
                      +..+..|.|+||+|+..+.     ..+.++|+. .|+   ..+..|..|+||||+|+..|+.+++++|++ .|++++..+
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~  177 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRN  177 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccc
Confidence            3344455555555555444     344444444 344   333345555555555555555555555555 555555555


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633          269 SDGDYGLDYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       269 ~~g~TpL~~A~~~g~~~iv~~Ll~~  293 (300)
                      ..|.|||++|+..++.+++++|+..
T Consensus       178 ~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         178 SYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             cCCCcchhhhcccchHHHHHHHHhc
Confidence            5555555555555555555555543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.38  E-value=2.3e-12  Score=118.99  Aligned_cols=95  Identities=19%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCC--chHHHHHHHCCCH---HHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG--LNCLHWACDRGHL---KVVQHLIEKCGADVNVTDSDGDYGLDY  277 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g--~t~Lh~A~~~g~~---~~v~~Ll~~~g~~~~~~d~~g~TpL~~  277 (300)
                      ....++.|+..+...++++|.. .|++++.+|..|  .||||+|+.....   +++++|++ +|+++|.+|..|+||||+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~  416 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYY  416 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHH
Confidence            3445666666666667777777 799999998775  6999998876654   45788899 999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCC
Q psy633          278 AKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       278 A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..++.+++++|+++||+++.
T Consensus       417 Aa~~~n~eivelLLs~GADIN~  438 (631)
T PHA02792        417 CIESHSVSLVEWLIDNGADINI  438 (631)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999999999999999985

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.36  E-value=7.9e-13  Score=128.46  Aligned_cols=144  Identities=13%  Similarity=-0.030  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee---eeecccC--------------CcccCcCcc
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN---VSSMIND--------------ESQLDDNEK  204 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~---~~~~~~~--------------~~~~~~~~~  204 (300)
                      ++..+..++++.|.....          ....+.+++|.|+..+...   +...+..              .......|.
T Consensus        60 A~~~~~~eiv~lLl~~g~----------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~  129 (743)
T TIGR00870        60 AIENENLELTELLLNLSC----------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI  129 (743)
T ss_pred             HHhcChHHHHHHHHhCCC----------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence            455556777776665442          2234556788777643321   1111111              011234689


Q ss_pred             hHHHHHHhCCHHHHHHHHhhcCCCCccccC--------------cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC
Q psy633          205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLD--------------ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD  270 (300)
Q Consensus       205 t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~  270 (300)
                      ||||.|+..+..+++++|++ .|++++.++              ..|.||||+|+..|+.+++++|++ .|+|+|.+|..
T Consensus       130 TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~  207 (743)
T TIGR00870       130 TALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSL  207 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhh
Confidence            99999999888889999988 899998653              258999999999999999999999 99999999999


Q ss_pred             CCcHHHHHHhcC---------cHHHHHHHHHcCCCC
Q psy633          271 GDYGLDYAKAIE---------HTDLIEYLVNSGAHS  297 (300)
Q Consensus       271 g~TpL~~A~~~g---------~~~iv~~Ll~~ga~~  297 (300)
                      |+||||+|+..+         ...+.+++++.+++.
T Consensus       208 g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       208 GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999987         344667777766553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.36  E-value=2.7e-12  Score=117.44  Aligned_cols=165  Identities=14%  Similarity=0.043  Sum_probs=125.3

Q ss_pred             cchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----C
Q psy633          121 YNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----E  196 (300)
Q Consensus       121 ~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~  196 (300)
                      .++..-..+++.+.       +++++..++++.|.+.-..     +...+ ..+..++|.|++.|+..+.+++..    .
T Consensus        42 ~n~qd~~gfTalhh-------a~Lng~~~is~llle~ea~-----ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~  108 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHH-------AVLNGQNQISKLLLDYEAL-----LDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDIL  108 (854)
T ss_pred             ccccCccchhHHHH-------HHhcCchHHHHHHhcchhh-----hhhhh-ccCcceEEehhhcCcchHHHHHHhcccCC
Confidence            33444445555554       7888888888877654322     23333 677788999999999855555432    3


Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC--------ccccC
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--------VNVTD  268 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~--------~~~~d  268 (300)
                      +..+..|.||||.|+..++.+++.+|+. +++++-.+|..+.|+|-+||+.|..++|++|+. ...+        -..++
T Consensus       109 na~~~e~~tplhlaaqhgh~dvv~~Ll~-~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~-~~~~~~~~~~~~~~~~~  186 (854)
T KOG0507|consen  109 NAVNIENETPLHLAAQHGHLEVVFYLLK-KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQ-KKFPVQSSLRVGDIKRP  186 (854)
T ss_pred             CcccccCcCccchhhhhcchHHHHHHHh-cCCCccccCcccccHHHHHHHhhhhHHHHHHhh-hccchhhcccCCCCCCC
Confidence            5567789999999999888899999998 899999999999999999999999999999987 3221        22344


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          269 SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       269 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      -.+-+|||+|+.+||.+|++.|++.|.|+|.+
T Consensus       187 ~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  187 FPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             CCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            56778999999999999999999999998853

>KOG1710|consensus

Probab=99.34  E-value=5.5e-12  Score=103.31  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             cCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC
Q psy633          194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD  272 (300)
Q Consensus       194 ~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~  272 (300)
                      .+.+.+|..|.++|..|+..|...++++|+. .|+|+|.. +..+.||||+|+..|+.+++++|++ .|+.+...+.-|+
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllld-aGa~~~~vNsvgr  113 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLD-AGARMYLVNSVGR  113 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHHcCCchHHHHHHh-ccCccccccchhh
Confidence            3356677778887766655444444555555 57777653 4447788888888888888888887 8888877787888


Q ss_pred             cHHHHHHhcCcHHHHHHHH
Q psy633          273 YGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       273 TpL~~A~~~g~~~iv~~Ll  291 (300)
                      |+-..|+.-||.+||.+.-
T Consensus       114 TAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  114 TAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHHhcchHHHHHHh
Confidence            8888888888888777653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=5e-12  Score=80.24  Aligned_cols=54  Identities=30%  Similarity=0.503  Sum_probs=44.3

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHH
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI  257 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  257 (300)
                      |.|++|+|+..+..++.++|.+ .|.+++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5799999999888888888888 69999999999999999999999999999996

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.30  E-value=1.1e-11  Score=102.51  Aligned_cols=99  Identities=30%  Similarity=0.375  Sum_probs=81.0

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHh-hcCCCCccccCcCCchHHHHHHHCCC-----HHHHHHHHhhcCC---CccccC
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLT-KLKDFNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGA---DVNVTD  268 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~-~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~g~---~~~~~d  268 (300)
                      ..+..+.++++.++..+...+..++. .....+  .++..|.||||+|+..|+     .+++++||+ .|+   ..+.+|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~  144 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVN--AKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRD  144 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc--cccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccC
Confidence            34455778888887766655554444 322334  368889999999999999     999999999 999   677779


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          269 SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       269 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ..|+||||+|+..|+.+++++|++.|++++.
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~  175 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNS  175 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcc
Confidence            9999999999999999999999999999875

>KOG0515|consensus

Probab=99.30  E-value=5.7e-12  Score=110.88  Aligned_cols=94  Identities=24%  Similarity=0.233  Sum_probs=83.2

Q ss_pred             CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcH
Q psy633          196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYG  274 (300)
Q Consensus       196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~Tp  274 (300)
                      ...-++.|-|+||-|..+++-+|+++|+. .|+++|..|.+||||||+|+..+++.+|+.|++ .|+.|-+.. .++.||
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe-~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVPMCKQLVE-SGAAVFASTLSDMETA  653 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchHHHHHHHh-ccceEEeeecccccch
Confidence            35567889999999988888888888888 899999999999999999999999999999999 999888776 788999


Q ss_pred             HHHH--HhcCcHHHHHHHH
Q psy633          275 LDYA--KAIEHTDLIEYLV  291 (300)
Q Consensus       275 L~~A--~~~g~~~iv~~Ll  291 (300)
                      ..-+  ...|+..|.+||.
T Consensus       654 ~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  654 AEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hhhcchhhhhHHHHHHHHH
Confidence            8765  3458999999996

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=1.2e-11  Score=92.28  Aligned_cols=116  Identities=27%  Similarity=0.389  Sum_probs=94.4

Q ss_pred             CCCCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          174 SGSKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       174 ~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      +.++++.|+..|.. .+..++..   ....+..|.+++|.|+..+...+.++|.. .+..++..+..|.||+|+|+..++
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCc
Confidence            34556666666664 22222211   24567788999999988776777887777 688888899999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  291 (300)
                      .+++++|+. .+.+++..+..|.|||++|...++.+++++|+
T Consensus        86 ~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          86 LDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999 99999999999999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.29  E-value=5.2e-12  Score=110.56  Aligned_cols=90  Identities=18%  Similarity=0.324  Sum_probs=75.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|++|+.|+++||||||+|.++++|.+|++ +++..+.+++|+|..+.+.....    ...                 
T Consensus       136 ~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~----~~~-----------------  194 (346)
T TIGR01659       136 TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESI----KDT-----------------  194 (346)
T ss_pred             EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccccc----ccc-----------------
Confidence            68999999999999999999999999999998 99999999999999886543211    111                 


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                        ..||.+|+..++++++.++|..|+.+....+.
T Consensus       195 --~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~  226 (346)
T TIGR01659       195 --NLYVTNLPRTITDDQLDTIFGKYGQIVQKNIL  226 (346)
T ss_pred             --eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEe
Confidence              23899999999999999999999987654443

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0145|consensus

Probab=99.24  E-value=1e-11  Score=99.98  Aligned_cols=93  Identities=18%  Similarity=0.359  Sum_probs=81.8

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF   79 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   79 (300)
                      .+|++++|+-||.|-|||||.|.+++++++|+. ++|-.+..+.|+|..|.|.....+.+                    
T Consensus        69 EScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~a--------------------  128 (360)
T KOG0145|consen   69 ESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDA--------------------  128 (360)
T ss_pred             eeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhccc--------------------
Confidence            478999999999999999999999999999999 99999999999999998776554432                    


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID  116 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~  116 (300)
                         ..||.+++..++..+++.+|..|+++.....-.+
T Consensus       129 ---NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~d  162 (360)
T KOG0145|consen  129 ---NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVD  162 (360)
T ss_pred             ---ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhh
Confidence               2299999999999999999999999887665544

>KOG1710|consensus

Probab=99.23  E-value=3.8e-11  Score=98.47  Aligned_cols=98  Identities=27%  Similarity=0.335  Sum_probs=85.3

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDY  277 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~  277 (300)
                      .|.....+|.....++.+....||..  --.+|..|..|+|+|..|+..|+.++|++||+ .|+|+|... ..+.||||+
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHH
Confidence            34445566777778888888888766  45689999999999999999999999999999 999999874 689999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCC
Q psy633          278 AKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       278 A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..|+.++.++|++.||....
T Consensus        86 AALSGn~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMYL  107 (396)
T ss_pred             HHHcCCchHHHHHHhccCcccc
Confidence            9999999999999999998653

>KOG0506|consensus

Probab=99.20  E-value=1.6e-11  Score=106.73  Aligned_cols=87  Identities=29%  Similarity=0.449  Sum_probs=81.7

Q ss_pred             hHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH
Q psy633          205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT  284 (300)
Q Consensus       205 t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~  284 (300)
                      .++++|..|+...+++++..  |.+++..|.+.+|+||.|+..||++++++||..++.+++.+|..|+|||.-|...+|.
T Consensus       509 ~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            45667777999999999998  9999999999999999999999999999999989999999999999999999999999


Q ss_pred             HHHHHHHHc
Q psy633          285 DLIEYLVNS  293 (300)
Q Consensus       285 ~iv~~Ll~~  293 (300)
                      +++++|-+.
T Consensus       587 ~v~k~L~~~  595 (622)
T KOG0506|consen  587 EVVKLLEEA  595 (622)
T ss_pred             HHHHHHHHH
Confidence            999999864

>KOG0818|consensus

Probab=99.19  E-value=7.6e-11  Score=103.09  Aligned_cols=84  Identities=29%  Similarity=0.372  Sum_probs=76.4

Q ss_pred             HHHH-HhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH
Q psy633          207 YEWA-KEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT  284 (300)
Q Consensus       207 l~~a-~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~  284 (300)
                      ||.+ ..++.+.+.++|..  |+++|..+.. |.||||.|+..|+..-+++|+- +|||+++.|.+|.||+.+|...||.
T Consensus       137 LhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCch
Confidence            5554 45888999998887  9999998876 9999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHc
Q psy633          285 DLIEYLVNS  293 (300)
Q Consensus       285 ~iv~~Ll~~  293 (300)
                      ++++.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            999988863

>KOG4214|consensus

Probab=99.19  E-value=4.9e-11  Score=81.26  Aligned_cols=76  Identities=22%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             cCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      ..|++|||+|+..+...+.++|+. -|++++.+|..|-|||..|+..||.++|++||+ .|++-..+..+|.+.+..+
T Consensus        32 ~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~-~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   32 YGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQ-NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHHHHHHHH-cCcccceeCCCchhHHhhc
Confidence            478999999999888888888888 799999999999999999999999999999999 9999999888888766543

>KOG0131|consensus

Probab=99.19  E-value=2.4e-11  Score=92.86  Aligned_cols=91  Identities=18%  Similarity=0.315  Sum_probs=75.8

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF   79 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   79 (300)
                      +++++++|+.|..++|||||+|.++|+++=|++ ++...+-||+|+|+.+.....    +....                
T Consensus        37 v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~----nl~vg----------------   96 (203)
T KOG0131|consen   37 VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQK----NLDVG----------------   96 (203)
T ss_pred             eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccc----ccccc----------------
Confidence            357899999999999999999999999999999 899999999999998862211    11110                


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                        |..|++++...+|+..+.+.|..|+++..-+-
T Consensus        97 --anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~  128 (203)
T KOG0131|consen   97 --ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPK  128 (203)
T ss_pred             --ccccccccCcchhHHHHHHHHHhccccccCCc
Confidence              23389999999999999999999999887554

>PF13606 Ank_3: Ankyrin repeat

Probab=99.18  E-value=3.3e-11  Score=66.04  Aligned_cols=30  Identities=23%  Similarity=0.502  Sum_probs=23.6

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          270 DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       270 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+||||+||..|+.++|++|+++|+|||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            477888888888888888888888888763

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.17  E-value=2.4e-11  Score=77.60  Aligned_cols=44  Identities=34%  Similarity=0.601  Sum_probs=26.6

Q ss_pred             HHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          256 LIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       256 Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      ||+ .| +++|.+|..|.||||+|+..|+.+++++|++.|+|++++
T Consensus         1 LL~-~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~   45 (56)
T PF13857_consen    1 LLE-HGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAK   45 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT--
T ss_pred             CCc-cCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCC
Confidence            566 67 999999999999999999999999999999999999863

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.17  E-value=6.2e-11  Score=109.60  Aligned_cols=100  Identities=18%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|++|+.||++||||||+|.+.+++++|++ +++..|+||.|+|..........  ....    .......      .
T Consensus       136 sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~--~~~~----~~~~~~~------~  203 (612)
T TIGR01645       136 SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ--PIID----MVQEEAK------K  203 (612)
T ss_pred             EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccc--cccc----ccccccc------c
Confidence            68899999999999999999999999999998 99999999999998654221100  0000    0000000      0


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      ....||++++..++++++.++|..|+.+.....
T Consensus       204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl  236 (612)
T TIGR01645       204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL  236 (612)
T ss_pred             cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE
Confidence            123589999999999999999999998765443

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0149|consensus

Probab=99.16  E-value=3.4e-11  Score=95.87  Aligned_cols=50  Identities=36%  Similarity=0.645  Sum_probs=46.6

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      ++++|+.|+.||||||||||||+|.+++.+|++-....|+||+..++.|.
T Consensus        40 ~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~   89 (247)
T KOG0149|consen   40 VEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS   89 (247)
T ss_pred             EEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence            46899999999999999999999999999999988899999999998875

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.15  E-value=6.1e-11  Score=105.41  Aligned_cols=89  Identities=21%  Similarity=0.375  Sum_probs=75.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|++|+.||++||||||+|.++++|.+|++ +++..|.|+.|.|..+.++....+    .                  
T Consensus        32 ~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~----~------------------   89 (352)
T TIGR01661        32 SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIK----G------------------   89 (352)
T ss_pred             EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccc----c------------------
Confidence            68999999999999999999999999999998 999999999999998876543211    1                  


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                       +..|+++++..++++++..+|..|+.+....+
T Consensus        90 -~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~  121 (352)
T TIGR01661        90 -ANLYVSGLPKTMTQHELESIFSPFGQIITSRI  121 (352)
T ss_pred             -ceEEECCccccCCHHHHHHHHhccCCEEEEEE
Confidence             12389999999999999999999987754443

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.15  E-value=6.8e-11  Score=90.67  Aligned_cols=53  Identities=36%  Similarity=0.707  Sum_probs=49.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|++|+.|+++||||||+|.++++|++|++ ++++.|+|++|+|+.+.++..
T Consensus        63 ~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~  116 (144)
T PLN03134         63 DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS  116 (144)
T ss_pred             EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence            67899999999999999999999999999998 999999999999999886644

>KOG0125|consensus

Probab=99.13  E-value=4.8e-11  Score=99.19  Aligned_cols=57  Identities=30%  Similarity=0.573  Sum_probs=49.5

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK   59 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~   59 (300)
                      +||+|+++ + +-|||||||||++.+++++|-+ ++|..++||+|+|+.|++|-...|++
T Consensus       124 ldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~  181 (376)
T KOG0125|consen  124 LDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKK  181 (376)
T ss_pred             eeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcc
Confidence            47899988 3 4599999999999999999998 99999999999999999985554443

>KOG4205|consensus

Probab=99.12  E-value=2.6e-11  Score=103.24  Aligned_cols=92  Identities=28%  Similarity=0.473  Sum_probs=79.9

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhh--hhhhhhhhhhhhhhhhhhH
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKK--IETKETASFSRMAENMEDR   78 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~   78 (300)
                      .+|.||+|+.|+++||||||+|++++.+.+++....|.|+||.|++++|.|+..+.+..  ....++             
T Consensus        34 ~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkki-------------  100 (311)
T KOG4205|consen   34 TDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKI-------------  100 (311)
T ss_pred             eeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEE-------------
Confidence            47899999999999999999999999999999989999999999999999987654432  234555             


Q ss_pred             HHHHhhhhcccccCCChHHHHHHHHhhcccccc
Q psy633           79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        79 F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                            |+.+++..+.++++.+.|..|+.+...
T Consensus       101 ------FvGG~~~~~~e~~~r~yfe~~g~v~~~  127 (311)
T KOG4205|consen  101 ------FVGGLPPDTTEEDFKDYFEQFGKVADV  127 (311)
T ss_pred             ------EecCcCCCCchHHHhhhhhccceeEee
Confidence                  899999999999999999999965543

>KOG0117|consensus

Probab=99.11  E-value=1.3e-10  Score=100.45  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=45.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee-cCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL-EGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~-~g~~~~v~~a~~   51 (300)
                      ++++|+|+.+|.+|||+||+|.+.++|++|++ +|.++| .||.|.|+.+..
T Consensus       112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva  163 (506)
T KOG0117|consen  112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA  163 (506)
T ss_pred             eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence            67999999999999999999999999999999 888877 789988887764

>KOG3676|consensus

Probab=99.07  E-value=3.9e-10  Score=104.59  Aligned_cols=94  Identities=22%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             cCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc---------C--------------cCCchHHHHHHHCCCHHHHHHHH
Q psy633          201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL---------D--------------ENGLNCLHWACDRGHLKVVQHLI  257 (300)
Q Consensus       201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~---------d--------------~~g~t~Lh~A~~~g~~~~v~~Ll  257 (300)
                      ..|.|+||.|..+....++.+|+. .|+|++++         |              ..|..||.+||.-++.+|+++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            346666666666555555555555 56666543         1              12455666666666666666666


Q ss_pred             hhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          258 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       258 ~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      + +|||++++|..|+|.||..+.+-..++-.+++++||+
T Consensus       261 ~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  261 A-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             h-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6 6666666666666666666666666666666666665

>KOG4369|consensus

Probab=99.05  E-value=6.8e-11  Score=112.21  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=108.0

Q ss_pred             cccccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc-CcCCchHHHH
Q psy633          169 DESQESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHW  243 (300)
Q Consensus       169 ~~~~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~-d~~g~t~Lh~  243 (300)
                      ....+-.+.|-.+|.+|+..+ ..++..   ...+|..|.++|..|+.+++..+++.|+. ..++++.. |+.+.|+|.+
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEE
Confidence            334445566778999998733 333333   46688899999999999999888888887 78888764 6668999999


Q ss_pred             HHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       244 A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      ||..|+.++|++||. .|++-..++-...|||.+|...|+.+||.+|+..|++||.+
T Consensus       831 acsggr~~vvelLl~-~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLN-AGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ecCCCcchHHHHHHH-hhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            999999999999999 99999999999999999999999999999999999998753

>smart00361 RRM_1 RNA recognition motif

Probab=99.03  E-value=5.3e-10  Score=74.91  Aligned_cols=42  Identities=14%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             EeeeCCC--CCccCeEEEEecChHHHHHHHh-cCCceecCcccee
Q psy633            5 VMFDKNT--GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI   46 (300)
Q Consensus         5 ~~~d~~t--~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v   46 (300)
                      |+.|+.+  |++||||||+|.++++|.+|+. +++..++||+|.+
T Consensus        25 v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361       25 IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            6788877  9999999999999999999999 9999999999876

>KOG0705|consensus

Probab=99.03  E-value=7.1e-10  Score=98.79  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=79.2

Q ss_pred             cCcchHHHHHHhCCHHHHHHHHhhcCCCCccc--cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ--LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~--~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      ..|..+|.+.+..++..+.-||.......+|.  .+.+|+|+||+||..|++.+.++|+- +|+|+.++|..|+|||.||
T Consensus       623 ~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  623 PLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYA  701 (749)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhH
Confidence            45666777777778777766665512223332  45568999999999999999999998 9999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~  297 (300)
                      .+.|..+|+.+|+.+|+-.
T Consensus       702 r~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhcccHHHHHHHHHcCCCc
Confidence            9999999999999999854

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.01  E-value=9.4e-10  Score=105.14  Aligned_cols=81  Identities=21%  Similarity=0.130  Sum_probs=73.6

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhc-------CCCccccCC
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-------GADVNVTDS  269 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-------g~~~~~~d~  269 (300)
                      +..+..|.||||+|+..++..++++|+. .|++++..|..|+||||+|+..|+.+++++|+. +       |++++..+.
T Consensus       109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        109 NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLSR-HSQCHFELGANAKPDSF  186 (664)
T ss_pred             CCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHh-CCCcccccCCCCCcccc
Confidence            4456789999999999999999999998 899999999999999999999999999999999 7       999999999


Q ss_pred             CCCcHHHHHH
Q psy633          270 DGDYGLDYAK  279 (300)
Q Consensus       270 ~g~TpL~~A~  279 (300)
                      .|.+|+..+.
T Consensus       187 ~g~~~~~~~~  196 (664)
T PTZ00322        187 TGKPPSLEDS  196 (664)
T ss_pred             CCCCccchhh
Confidence            8988877664

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.01  E-value=4.4e-10  Score=63.34  Aligned_cols=30  Identities=33%  Similarity=0.593  Sum_probs=22.9

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          270 DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       270 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+||||+|+..|+.+++++|+++||+++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            477777777777777777777777777765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=5.8e-10  Score=61.06  Aligned_cols=30  Identities=47%  Similarity=0.728  Sum_probs=28.2

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhhcCCCccc
Q psy633          236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV  266 (300)
Q Consensus       236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~  266 (300)
                      +|+||||+||..|+.+++++||+ .|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence            48999999999999999999999 9999984

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.99  E-value=1e-09  Score=103.49  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=74.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|++|+.|++++|||||+|.+.++|.+|++ +++..|+|+.|+|.++....... +. ...                 
T Consensus        29 ~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~-~~-~~~-----------------   89 (562)
T TIGR01628        29 SVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR-RS-GVG-----------------   89 (562)
T ss_pred             EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc-cc-CCC-----------------
Confidence            68999999999999999999999999999998 89999999999998875322111 10 011                 


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                        ..||++++.+++++++.++|..|+.+.....
T Consensus        90 --~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i  120 (562)
T TIGR01628        90 --NIFVKNLDKSVDNKALFDTFSKFGNILSCKV  120 (562)
T ss_pred             --ceEEcCCCccCCHHHHHHHHHhcCCcceeEe
Confidence              2389999999999999999999998765444

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG3676|consensus

Probab=98.98  E-value=1.3e-09  Score=101.12  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC--ccccCCCCCcHHHHHH
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--VNVTDSDGDYGLDYAK  279 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~--~~~~d~~g~TpL~~A~  279 (300)
                      -|..||..|+.-+.++++++|.. .|+|++.+|..|+|.||..+..-..++..+++. +|++  ...+|+.|-|||.+|+
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHH
Confidence            47789999988888889999998 899999999999999999999989999999999 9999  9999999999999999


Q ss_pred             hcCcHHHHHHHHHc
Q psy633          280 AIEHTDLIEYLVNS  293 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~  293 (300)
                      .-|..++-+.+++.
T Consensus       317 klGk~emf~~ile~  330 (782)
T KOG3676|consen  317 KLGKKEMFQHILER  330 (782)
T ss_pred             HhhhHHHHHHHHHh
Confidence            99999999999987

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.95  E-value=1.4e-09  Score=100.12  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=76.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|+.+++..+.|++|.|..+........... ....   .. ..      ..
T Consensus       118 ~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~-~~~~---~~-~p------~~  186 (457)
T TIGR01622       118 DVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAA-THQP---GD-IP------NF  186 (457)
T ss_pred             EEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcc-cccC---CC-CC------CC
Confidence            68899999999999999999999999999999999999999999987653322111100 0000   00 00      02


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      .+.||++++..++++++.++|..|+.+....+.
T Consensus       187 ~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~  219 (457)
T TIGR01622       187 LKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH  219 (457)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence            335899999999999999999999987654443

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0111|consensus

Probab=98.95  E-value=3.5e-10  Score=89.03  Aligned_cols=52  Identities=19%  Similarity=0.424  Sum_probs=49.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.++.|.+++++||||||+|...|++.+||. |++.++-||.|+|..|.|..
T Consensus        39 dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k   91 (298)
T KOG0111|consen   39 DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK   91 (298)
T ss_pred             hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence            67899999999999999999999999999998 99999999999999998753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.95  E-value=1.5e-09  Score=61.19  Aligned_cols=33  Identities=42%  Similarity=0.763  Sum_probs=31.1

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC
Q psy633          236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS  269 (300)
Q Consensus       236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~  269 (300)
                      +|+||||+|+..|+.+++++||+ .|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            58999999999999999999999 9999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0127|consensus

Probab=98.90  E-value=1.5e-09  Score=96.13  Aligned_cols=112  Identities=18%  Similarity=0.281  Sum_probs=79.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhh-hh-hhhhh-hhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKE-TA-SFSRM-AENMED   77 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~-~~-~~~~~-~~~l~~   77 (300)
                      .|.|++++.++.+||||||+|.-+|++++|+. .....++||.+.|..|++|..........++ .. .+.+- .....-
T Consensus        34 ~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v  113 (678)
T KOG0127|consen   34 HAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKV  113 (678)
T ss_pred             eeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhc
Confidence            47899999999999999999999999999999 8899999999999999987643311100000 00 00000 000101


Q ss_pred             HHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      .-.+....++++++++..+++..+|+.|+.+.....
T Consensus       114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I  149 (678)
T KOG0127|consen  114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI  149 (678)
T ss_pred             cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc
Confidence            111445588999999999999999999998765443

>KOG4369|consensus

Probab=98.86  E-value=1.1e-09  Score=104.25  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHH
Q psy633          143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDML  218 (300)
Q Consensus       143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v  218 (300)
                      |-.+.+.+|+.|...-.+     +....+....+.+..+|..|...+.. +++.   ...++-...|||..|+.|+...+
T Consensus       798 atagh~tvV~~llk~ha~-----veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~i  872 (2131)
T KOG4369|consen  798 ATAGHITVVQDLLKAHAD-----VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKI  872 (2131)
T ss_pred             cccCchHHHHHHHhhhhh-----hhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHH
Confidence            334455555555444333     34444455667788888888873333 3322   45566777899999999999888


Q ss_pred             HHHHhhcCCCCccccC--cCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc-----------------------------
Q psy633          219 VKQLTKLKDFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT-----------------------------  267 (300)
Q Consensus       219 ~~ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~-----------------------------  267 (300)
                      +++|+. .|+.||.+.  ..|-.||++|+.+||.+.+..||+ .|.|||+.                             
T Consensus       873 I~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~ll~-~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a  950 (2131)
T KOG4369|consen  873 IHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ-PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA  950 (2131)
T ss_pred             HHHHhh-cccccccccccccCcchhhhhhhccccHHHHHHhc-ccchhccccccccccceeeccccCcchHHHHHHHHhh
Confidence            888888 888887764  347888888888888887777777 77777654                             


Q ss_pred             -----CCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          268 -----DSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       268 -----d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                           -..|.|||+-++..|..++-++||..|||+|.
T Consensus       951 nvehRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  951 NVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             hhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence                 23466666666666666666666666666653

>KOG0522|consensus

Probab=98.84  E-value=8.4e-09  Score=91.47  Aligned_cols=87  Identities=25%  Similarity=0.368  Sum_probs=73.2

Q ss_pred             hHHHHHHh-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633          205 NIYEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH  283 (300)
Q Consensus       205 t~l~~a~~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~  283 (300)
                      .++|++.. .+...+.+.|.......++..|..|.||||+|+..||...++.|+. .|+++..+|+.||+|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCC
Confidence            35777755 4555566655542566788999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy633          284 TDLIEYLVN  292 (300)
Q Consensus       284 ~~iv~~Ll~  292 (300)
                      .+++..++.
T Consensus       101 ~q~i~~vlr  109 (560)
T KOG0522|consen  101 EQIITEVLR  109 (560)
T ss_pred             HHHHHHHHH
Confidence            988777664

>KOG4207|consensus

Probab=98.81  E-value=3.2e-09  Score=82.93  Aligned_cols=50  Identities=30%  Similarity=0.529  Sum_probs=47.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +|.|+.|+-|+.+|||+||-|.+..+|++|++ |+|..++|+.+.|..|..
T Consensus        42 DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary   92 (256)
T KOG4207|consen   42 DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY   92 (256)
T ss_pred             ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence            78999999999999999999999999999999 999999999999998874

>KOG0783|consensus

Probab=98.81  E-value=1.8e-09  Score=100.05  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      .+..|..|+++||.++.-+...+.+.|++ +|++++.+|.. |+||||-|...|+++++-+||. +|+.+..+|.+|..|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCceEEecccCCCH
Confidence            34456666666666666666666666666 56666666655 6677777666677776666666 666666666666666


Q ss_pred             HHHHHh
Q psy633          275 LDYAKA  280 (300)
Q Consensus       275 L~~A~~  280 (300)
                      |..-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            666554

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.76  E-value=1.6e-08  Score=95.39  Aligned_cols=93  Identities=18%  Similarity=0.385  Sum_probs=72.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|+.| .+|++||||||.|.+++++.+|++ +++..++|+.|.|....++.........                .| 
T Consensus       117 ~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~----------------~~-  178 (562)
T TIGR01628       117 SCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLK----------------KF-  178 (562)
T ss_pred             eeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccccccc----------------CC-
Confidence            5788888 589999999999999999999998 9999999999999776654332100000                00 


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                       ...||++++.+++++++.++|..|+.+....+
T Consensus       179 -~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i  210 (562)
T TIGR01628       179 -TNLYVKNLDPSVNEDKLRELFAKFGEITSAAV  210 (562)
T ss_pred             -CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence             12389999999999999999999997765443

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0144|consensus

Probab=98.75  E-value=1.9e-08  Score=86.92  Aligned_cols=90  Identities=18%  Similarity=0.380  Sum_probs=72.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecC--ccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEG--SRLSIQPSDSHNSQVKKKIETKETASFSRMAENMED   77 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (300)
                      +|.|++|+.||.+||+|||+|.+.+++.+|+. + +..+|-|  .+|.|+.|+..+...   ....++            
T Consensus        63 einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~---~~e~KL------------  127 (510)
T KOG0144|consen   63 EINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI---VEERKL------------  127 (510)
T ss_pred             EEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc---ccchhh------------
Confidence            68999999999999999999999999999998 4 5677777  578888886433222   222233            


Q ss_pred             HHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                             ||+.+....++.++.++|..|+++.....
T Consensus       128 -------Fvg~lsK~~te~evr~iFs~fG~Ied~~i  156 (510)
T KOG0144|consen  128 -------FVGMLSKQCTENEVREIFSRFGHIEDCYI  156 (510)
T ss_pred             -------hhhhccccccHHHHHHHHHhhCccchhhh
Confidence                   89999999999999999999998875443

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.75  E-value=1.5e-08  Score=93.80  Aligned_cols=75  Identities=20%  Similarity=0.349  Sum_probs=62.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceec-CccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE-GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF   79 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~-g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   79 (300)
                      +++||+| .+|+|||||||+|.+.++|++|++ +++..|. |+.+.|..+..          ...+              
T Consensus        87 ~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~----------~~rL--------------  141 (578)
T TIGR01648        87 ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD----------NCRL--------------  141 (578)
T ss_pred             EEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc----------Ccee--------------
Confidence            6889999 899999999999999999999999 8888884 78877765532          1122              


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhc
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYK  106 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k  106 (300)
                           ||++++...+++++++.|..+.
T Consensus       142 -----FVgNLP~~~TeeeL~eeFskv~  163 (578)
T TIGR01648       142 -----FVGGIPKNKKREEILEEFSKVT  163 (578)
T ss_pred             -----EeecCCcchhhHHHHHHhhccc
Confidence                 8999999999999999988774

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0124|consensus

Probab=98.73  E-value=2.1e-08  Score=84.77  Aligned_cols=94  Identities=17%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      ++.+-.|+.|+++|||+||+|+-+|+++-|++ ||+..++||.|+|.+......  -              ...+++.=+
T Consensus       142 SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQ--A--------------QpiID~vqe  205 (544)
T KOG0124|consen  142 SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ--A--------------QPIIDMVQE  205 (544)
T ss_pred             eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcc--c--------------chHHHHHHH
Confidence            56777899999999999999999999999999 999999999999985431110  0              001111112


Q ss_pred             HHh----hhhcccccCCChHHHHHHHHhhcccccc
Q psy633           81 QAC----DYLPSLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        81 ~a~----~~v~~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                      .|.    .||.++-..++++++...|..|+.+...
T Consensus       206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C  240 (544)
T KOG0124|consen  206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC  240 (544)
T ss_pred             HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence            222    2666777889999999999999987643

>KOG0783|consensus

Probab=98.66  E-value=1.7e-08  Score=93.73  Aligned_cols=80  Identities=25%  Similarity=0.217  Sum_probs=69.8

Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      +..++....+.-.|..|..|+|+||+|+..|...++++||. +|++++.+| ..|+||||-|..+|+++|+-+||++|+.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            44455542334468899999999999999999999999999 899999999 5899999999999999999999999986


Q ss_pred             CC
Q psy633          297 SS  298 (300)
Q Consensus       297 ~~  298 (300)
                      ..
T Consensus       112 L~  113 (1267)
T KOG0783|consen  112 LR  113 (1267)
T ss_pred             eE
Confidence            53

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.63  E-value=6.5e-08  Score=86.00  Aligned_cols=51  Identities=24%  Similarity=0.558  Sum_probs=44.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~   52 (300)
                      .+.++.|+.+|.+||||||+|.+.+++.+|++ +++..+.|  ++|.|..+...
T Consensus       118 ~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~  171 (352)
T TIGR01661       118 TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP  171 (352)
T ss_pred             EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence            46788999999999999999999999999998 99999887  56777777543

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.61  E-value=6.3e-08  Score=89.96  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|+|++|+.||++||||||+|.+.+++.+|++ +|+..|+|+.|+|.++.+.
T Consensus       233 svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p  284 (612)
T TIGR01645       233 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP  284 (612)
T ss_pred             EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence            68899999999999999999999999999999 9999999999999998854

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0511|consensus

Probab=98.60  E-value=8.2e-08  Score=81.93  Aligned_cols=62  Identities=29%  Similarity=0.313  Sum_probs=34.6

Q ss_pred             HHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633          209 WAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY  273 (300)
Q Consensus       209 ~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T  273 (300)
                      ++..|+.+.+..++..  |.++|..|....+||.+|+..||.++|++||+ .||-...-..+|.-
T Consensus        43 acR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~R  104 (516)
T KOG0511|consen   43 ACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDR  104 (516)
T ss_pred             HhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcch
Confidence            3334555544444433  66666666666666666666666666666666 66544443344443

>KOG0226|consensus

Probab=98.59  E-value=2.7e-08  Score=80.28  Aligned_cols=53  Identities=26%  Similarity=0.491  Sum_probs=49.1

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      .+|++|+.||+|+|||||.|.+..+..+|+. |+|..++.|+|....+.++..+
T Consensus       220 akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wkeRn  273 (290)
T KOG0226|consen  220 AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKERN  273 (290)
T ss_pred             ccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHhhh
Confidence            5789999999999999999999999999998 9999999999999998887643

>KOG2384|consensus

Probab=98.56  E-value=2.2e-07  Score=72.10  Aligned_cols=69  Identities=26%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             CCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       227 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      +.++|.+|..|||||+.|+..|..+.|.||+. .| +.+...|..|.+++.+|-..|+.++|.+|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            46889999999999999999999999999999 88 89999999999999999999999999999886443

>KOG0108|consensus

Probab=98.53  E-value=1e-07  Score=85.04  Aligned_cols=53  Identities=23%  Similarity=0.590  Sum_probs=49.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +++++.|++||++|||||++|.+.+.+..|++ +++.+++||+++|.++.....
T Consensus        47 s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~  100 (435)
T KOG0108|consen   47 SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN  100 (435)
T ss_pred             eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence            67899999999999999999999999999999 999999999999999876544

>KOG0123|consensus

Probab=98.53  E-value=1.5e-07  Score=83.14  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=76.2

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF   79 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   79 (300)
                      ++++|.+|- |  |-|||||.|.+++++.+|+. ++...+.|++|++-+++.....                        
T Consensus        26 ~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~------------------------   78 (369)
T KOG0123|consen   26 LSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL------------------------   78 (369)
T ss_pred             eeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce------------------------
Confidence            478999998 6  99999999999999999999 9999999999999887644332                        


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCC
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP  118 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p  118 (300)
                          .|++++..++++.++.++|..|+++...++..+.-
T Consensus        79 ----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~  113 (369)
T KOG0123|consen   79 ----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN  113 (369)
T ss_pred             ----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC
Confidence                38999999999999999999999999877766543

>KOG4205|consensus

Probab=98.53  E-value=3.9e-08  Score=84.01  Aligned_cols=57  Identities=30%  Similarity=0.574  Sum_probs=52.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKK   58 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~   58 (300)
                      ++.+|+|+.+.++||||||+|.+++++++++.+..|.|+|+.|+|++|.||......
T Consensus       126 ~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~  182 (311)
T KOG4205|consen  126 DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST  182 (311)
T ss_pred             eeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhcccc
Confidence            578999999999999999999999999999999999999999999999999765443

>PF00076 RRM_1: RNA recognition motif

Probab=98.49  E-value=2.4e-07  Score=61.74  Aligned_cols=43  Identities=28%  Similarity=0.618  Sum_probs=39.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS   45 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~   45 (300)
                      .+.++.+ .+++++|||||+|.+.+++++|++ +++..++|++|+
T Consensus        27 ~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen   27 SIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             ccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            4677887 899999999999999999999999 999999998874

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0113|consensus

Probab=98.46  E-value=2.5e-07  Score=76.47  Aligned_cols=50  Identities=22%  Similarity=0.519  Sum_probs=46.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      .++|+.|+.||+|||||||+|+++.++..|.+ .++..|+|+.|-|..-..
T Consensus       130 rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg  180 (335)
T KOG0113|consen  130 RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG  180 (335)
T ss_pred             eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence            47899999999999999999999999999999 899999999999887643

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.46  E-value=2.7e-07  Score=85.58  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             eCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633            8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD   84 (300)
Q Consensus         8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~   84 (300)
                      +..++++||||||+|.+++++..|+. +.  ...+.|+.|.|..+.++..........                  ..+.
T Consensus       175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~------------------~k~L  236 (578)
T TIGR01648       175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAK------------------VKIL  236 (578)
T ss_pred             ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccccccc------------------ccEE
Confidence            34578899999999999999999997 43  346899999999988764322111111                  0123


Q ss_pred             hhcccccCCChHHHHHHHHhh--ccccc
Q psy633           85 YLPSLVKKLDSSTLLKFYALY--KQATV  110 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~--k~~~~  110 (300)
                      ||++++.+++++++.++|..|  +.+..
T Consensus       237 fVgNL~~~~tee~L~~~F~~f~~G~I~r  264 (578)
T TIGR01648       237 YVRNLMTTTTEEIIEKSFSEFKPGKVER  264 (578)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence            899999999999999999999  66553

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0520|consensus

Probab=98.46  E-value=1.3e-07  Score=90.44  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      ...|++++|.++..+...+.+-+.+..+......|.+|.-.+|+ |..++.+++-+|+...|..++.+|..||||||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            34456666666665555555555541133334444455555555 45555555555554456666666666666666666


Q ss_pred             hcCcHHHHHHHHHcCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~  297 (300)
                      .+|+..++..|++.|++.
T Consensus       650 ~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADP  667 (975)
T ss_pred             hcCHHHHHHHHHHhcccc
Confidence            666666666666666554

>smart00360 RRM RNA recognition motif

Probab=98.45  E-value=5.1e-07  Score=59.69  Aligned_cols=46  Identities=35%  Similarity=0.661  Sum_probs=41.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ   47 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~   47 (300)
                      .+.++.++.+++++|||||+|.+.+++.+|++ +++..++|+.+.|.
T Consensus        25 ~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360       25 SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            46788888899999999999999999999998 88899999988763

>KOG0126|consensus

Probab=98.44  E-value=5.7e-08  Score=74.56  Aligned_cols=50  Identities=20%  Similarity=0.427  Sum_probs=45.8

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      ++|.+++|+.||+|+||||.-|++..+---|+. ++|..|.||.|+|....
T Consensus        63 vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   63 VDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             EEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            478899999999999999999999999888887 99999999999998654

>PF14259 RRM_6: RNA recognition motif (a

Probab=98.41  E-value=4.6e-07  Score=60.48  Aligned_cols=43  Identities=26%  Similarity=0.622  Sum_probs=38.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS   45 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~   45 (300)
                      .+.++.++. |+++|+|||+|.+++++.+|++ .+++.++|+.|+
T Consensus        27 ~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen   27 KVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             eEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            467888877 9999999999999999999999 677999999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.41  E-value=5.3e-07  Score=83.37  Aligned_cols=101  Identities=15%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh--hh----------hhhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK--IE----------TKETASF   68 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~--~~----------~~~~~~~   68 (300)
                      +|+|+++     +||||||+|.+.++|.+|+. ++++.|.|++|+|..+........+.  ..          .....++
T Consensus       305 ~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~  379 (481)
T TIGR01649       305 RVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRF  379 (481)
T ss_pred             EEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccC
Confidence            5677776     37999999999999999998 99999999999999876432111100  00          0000000


Q ss_pred             hhhh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhcc
Q psy633           69 SRMA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYKQ  107 (300)
Q Consensus        69 ~~~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~  107 (300)
                      .... ..... .-.....|+++++.+++++++.++|..|+.
T Consensus       380 ~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~  420 (481)
T TIGR01649       380 KKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGV  420 (481)
T ss_pred             CCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCC
Confidence            0000 00000 001234589999999999999999999997

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.39  E-value=4.5e-07  Score=79.67  Aligned_cols=51  Identities=27%  Similarity=0.558  Sum_probs=46.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~   52 (300)
                      ++.|++|+.||++||||||+|.+.++|++|++ +++..++|  ++|.|+.+..+
T Consensus       222 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       222 QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence            57899999999999999999999999999999 99999877  68888888754

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.38  E-value=4.4e-07  Score=84.77  Aligned_cols=105  Identities=12%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhh--hhhh----hhhhhhhhhhhhhhhhHH
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK--KKIE----TKETASFSRMAENMEDRF   79 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~--~~~~----~~~~~~~~~~~~~l~~~F   79 (300)
                      +.+...++++|||||+|.+.++|..|+.+++..+.|+.|.|...........  ....    .............-...-
T Consensus       214 v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (509)
T TIGR01642       214 VSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLD  293 (509)
T ss_pred             eEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCC
Confidence            4455567889999999999999999999999999999999976542211000  0000    000000000000000000


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhccccc
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATV  110 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~  110 (300)
                      .....||++++..++++++.++|..|+.+..
T Consensus       294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~  324 (509)
T TIGR01642       294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKA  324 (509)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence            1123589999999999999999999987654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0123|consensus

Probab=98.38  E-value=7.3e-07  Score=78.87  Aligned_cols=98  Identities=21%  Similarity=0.365  Sum_probs=74.5

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRF   79 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   79 (300)
                      ++|+|++|. .| |||| ||.|++++++.+|+. +++..++|++|.|.....+......... .. .++           
T Consensus       104 lS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~-~~~-----------  167 (369)
T KOG0123|consen  104 LSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK-KRF-----------  167 (369)
T ss_pred             eEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh-hhh-----------
Confidence            489999995 46 9999 999999999999999 9999999999999998876543322211 11 001           


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID  116 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~  116 (300)
                        +..++++.....+++.+..+|..|+.++.-.+..+
T Consensus       168 --t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~  202 (369)
T KOG0123|consen  168 --TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD  202 (369)
T ss_pred             --hhhheeccccccchHHHHHhhcccCcceEEEEeec
Confidence              11267777788899999999999998776555443

>KOG0782|consensus

Probab=98.34  E-value=8.8e-07  Score=79.41  Aligned_cols=92  Identities=25%  Similarity=0.306  Sum_probs=69.8

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCC-CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDF-NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      +.+..++||+|+.-+..+++++++...+. .+++.|..|.|+||-|+..++..++.+|++ .|+.+...|..|.||-.-|
T Consensus       896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd-agasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD-AGASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh-cchhheecccCCCChHHHH
Confidence            44556788888775555555555551222 346778888888888888888888888888 8888888888888888888


Q ss_pred             HhcCcHHHHHHHHH
Q psy633          279 KAIEHTDLIEYLVN  292 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~  292 (300)
                      -+.|..+++.||-+
T Consensus       975 qqa~d~dlaayle~  988 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLES  988 (1004)
T ss_pred             HhcCCchHHHHHhh
Confidence            88888888888865

>KOG0782|consensus

Probab=98.32  E-value=1.2e-06  Score=78.61  Aligned_cols=94  Identities=18%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCC--CccccCCCCCcHHHHHH
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGA--DVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~--~~~~~d~~g~TpL~~A~  279 (300)
                      .+.++|.++..+++-.+.+.-..  |-++-.++.+-.|.||+|+..|+-++|+|||+ +|-  .++..|..|.|+||-|+
T Consensus       866 iseeil~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyild-h~p~elld~~de~get~lhkaa  942 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILD-HGPSELLDMADETGETALHKAA  942 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHh-cCCHHHHHHHhhhhhHHHHHHH
Confidence            34567888888998888877766  67777888889999999999999999999999 765  36778899999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~~  298 (300)
                      ..++..+..+|++.||..-
T Consensus       943 ~~~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  943 CQRNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             HhcchHHHHHHHhcchhhe
Confidence            9999999999999999753

>KOG0520|consensus

Probab=98.32  E-value=5.2e-07  Score=86.37  Aligned_cols=95  Identities=28%  Similarity=0.437  Sum_probs=79.3

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccc------cCCC
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV------TDSD  270 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~------~d~~  270 (300)
                      ...+.++.-.+|.++.++.+..+.++.- .|..++.+|..||||||||+.+||..++..|+. .|++.+.      .+-.
T Consensus       602 ~eld~d~qgV~hfca~lg~ewA~ll~~~-~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~  679 (975)
T KOG0520|consen  602 LELDRDGQGVIHFCAALGYEWAFLPISA-DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIE-LGADPGAVTDPSPETPG  679 (975)
T ss_pred             hhhcccCCChhhHhhhcCCceeEEEEee-cccccccccCCCCcccchHhhcCHHHHHHHHHH-hccccccccCCCCCCCC
Confidence            3455667778888888888877776665 799999999999999999999999999999998 8775443      3457


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHc
Q psy633          271 GDYGLDYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       271 g~TpL~~A~~~g~~~iv~~Ll~~  293 (300)
                      |.|+-.+|..+|+..+..+|-+.
T Consensus       680 g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  680 GKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998888653

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.31  E-value=9.8e-07  Score=72.98  Aligned_cols=47  Identities=11%  Similarity=0.333  Sum_probs=42.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~   51 (300)
                      +|.|++|+.   ++|||||+|.++++++.|+.+++..|.||.|.|..+..
T Consensus        33 ~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120         33 YVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED   79 (260)
T ss_pred             EEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence            678888864   57999999999999999999999999999999999863

>KOG3609|consensus

Probab=98.28  E-value=2.2e-06  Score=80.63  Aligned_cols=94  Identities=21%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             chHHHHHHhCCHHHHHHHHhhcCC--CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC--------------------
Q psy633          204 KNIYEWAKEGKLDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG--------------------  261 (300)
Q Consensus       204 ~t~l~~a~~~~~~~v~~ll~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g--------------------  261 (300)
                      .-.|.++-.|+...+.+.|.....  .++|..|.-|+++|++|..+-+.+++++|++ .+                    
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~-~~~~~gdALL~aI~~~~v~~VE  105 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLD-TSSEEGDALLLAIAVGSVPLVE  105 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhc-CccccchHHHHHHHHHHHHHHH
Confidence            334445555555555555554222  3445555555555555555555555555555 32                    


Q ss_pred             ------CCc----------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          262 ------ADV----------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       262 ------~~~----------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                            ...          ...-..+-|||.+||.+++.||+++||.+|+++-
T Consensus       106 ~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  106 LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                  111          1222457899999999999999999999999874

>KOG0521|consensus

Probab=98.27  E-value=8.2e-07  Score=85.25  Aligned_cols=88  Identities=28%  Similarity=0.328  Sum_probs=77.1

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI  281 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~  281 (300)
                      .|.+++|.|+..+...+.++|+. .|+++|..|..|+||||.+...|+...+..|++ .|++.++.+.+|.+||++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhhh
Confidence            45789999999888888888888 899999999999999999999999999999999 9999999999999999999777


Q ss_pred             CcHHHHHHHH
Q psy633          282 EHTDLIEYLV  291 (300)
Q Consensus       282 g~~~iv~~Ll  291 (300)
                      .+.+++-+|.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            7777666554

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.25  E-value=2e-06  Score=79.52  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=63.5

Q ss_pred             ccCeEEEEecChHHHHHHHh---cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633           14 SKGFGFVTFQNKEAVDKVFS---TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV   90 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~---~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~   90 (300)
                      +||||||+|.+.++|.+|++   +++..|+|++|.|..+..+........ .     +.....     =.....+|.++.
T Consensus        37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~-~-----~~~~~~-----~~~~~v~v~nl~  105 (481)
T TIGR01649        37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS-D-----FDSAGP-----NKVLRVIVENPM  105 (481)
T ss_pred             CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC-c-----ccCCCC-----CceEEEEEcCCC
Confidence            57899999999999999997   378999999999999875532111100 0     000000     001123788999


Q ss_pred             cCCChHHHHHHHHhhcccccccCC
Q psy633           91 KKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        91 ~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      ..++++++.++|..|+.+....+.
T Consensus       106 ~~vt~~~L~~~F~~~G~V~~v~i~  129 (481)
T TIGR01649       106 YPITLDVLYQIFNPYGKVLRIVTF  129 (481)
T ss_pred             CCCCHHHHHHHHhccCCEEEEEEE
Confidence            899999999999999988765543

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PLN03213 repressor of silencing 3; Provisional

Probab=98.24  E-value=1.2e-06  Score=77.13  Aligned_cols=47  Identities=23%  Similarity=0.605  Sum_probs=42.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecCh--HHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNK--EAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~--~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|+  ++||  ||||||+|.++  .++.+||. +++..+.||.|+|..|.|.
T Consensus        39 dVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~   88 (759)
T PLN03213         39 AVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH   88 (759)
T ss_pred             EEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence            57788  6688  99999999987  78999999 9999999999999999875

>PF13893 RRM_5: RNA recognition motif

Probab=98.23  E-value=1.8e-06  Score=54.88  Aligned_cols=35  Identities=26%  Similarity=0.535  Sum_probs=32.7

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      +|++||+|.+.++|.+|++ +++..++|++|+|..|
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            7999999999999999999 9999999999998753

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0110|consensus

Probab=98.20  E-value=1.4e-06  Score=80.04  Aligned_cols=86  Identities=21%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhh-hhhhhhhhhhhhhhhhhhhhhHHHHHhhhhccccc
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQV-KKKIETKETASFSRMAENMEDRFNQACDYLPSLVK   91 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~   91 (300)
                      |.|||||+|.+++++++|++ |+|+.|+|+.|.|+.+..+.... .+.....+.      ..         ...|++++.
T Consensus       559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~------~t---------KIlVRNipF  623 (725)
T KOG0110|consen  559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK------GT---------KILVRNIPF  623 (725)
T ss_pred             ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccc------cc---------eeeeeccch
Confidence            56999999999999999999 89999999999999987332211 111111100      01         127999999


Q ss_pred             CCChHHHHHHHHhhcccccccCC
Q psy633           92 KLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        92 ~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      ..+-.+..++|..|+|+-....+
T Consensus       624 eAt~rEVr~LF~aFGqlksvRlP  646 (725)
T KOG0110|consen  624 EATKREVRKLFTAFGQLKSVRLP  646 (725)
T ss_pred             HHHHHHHHHHHhcccceeeeccc
Confidence            99999999999999998765543

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.20  E-value=2.2e-06  Score=80.07  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=47.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      .+.|++|+.||+++|||||+|.+.+++..|++ +++..|.|+.|.|..|...
T Consensus       324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~  375 (509)
T TIGR01642       324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG  375 (509)
T ss_pred             EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence            46789999999999999999999999999998 9999999999999998654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG4208|consensus

Probab=98.19  E-value=1.6e-06  Score=68.24  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +++-+.+.||.|||||||+|++++.|.=|.+ ||.-.+.|+.+.|..--|
T Consensus        80 ~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp  129 (214)
T KOG4208|consen   80 FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP  129 (214)
T ss_pred             EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence            4556899999999999999999999998888 999999999988876543

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.16  E-value=2.5e-06  Score=78.57  Aligned_cols=49  Identities=27%  Similarity=0.535  Sum_probs=46.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.++.|+.+|++||||||+|.+.+++.+|+. +++..|.|++|.|..+.
T Consensus       215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~  264 (457)
T TIGR01622       215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ  264 (457)
T ss_pred             EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence            57899999999999999999999999999998 99999999999999987

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG3878|consensus

Probab=98.16  E-value=5.1e-06  Score=69.75  Aligned_cols=93  Identities=20%  Similarity=0.364  Sum_probs=83.7

Q ss_pred             hhhhhhhhhhHHHHHhhhhcccc---cCCChHHHHHHHHhhcccccccCCCC---CCCccchhhhHHHHHHHHcCCCCHH
Q psy633           68 FSRMAENMEDRFNQACDYLPSLV---KKLDSSTLLKFYALYKQATVGQCNID---KPSWYNMEAKSKYNAWNSLGQMAKS  141 (300)
Q Consensus        68 ~~~~~~~l~~~F~~a~~~v~~~~---~~~~~~~~~~~~~~~k~~~~g~~~~~---~p~~~~~~~~~k~~aw~~~~~~~~~  141 (300)
                      .+.|+.+|++.+..|..|.+...   ..++.++.++|.++.||+..|+.+++   .-|+++..+......|..++.|+.+
T Consensus        25 ~~~wGf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre  104 (469)
T KOG3878|consen   25 AEKWGFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISRE  104 (469)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHH
Confidence            35788999999999999998765   46899999999999999999999975   3489999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCch
Q psy633          142 EAMSKYIALLNEVDAGWED  160 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~  160 (300)
                      +||.+++.+++...+.+.+
T Consensus       105 ~AM~~FV~Lldr~C~~F~~  123 (469)
T KOG3878|consen  105 QAMEGFVDLLDRMCSAFRP  123 (469)
T ss_pred             HHHHHHHHHHHhcchhhhh
Confidence            9999999999999887655

>KOG0131|consensus

Probab=98.16  E-value=1.3e-06  Score=67.21  Aligned_cols=51  Identities=25%  Similarity=0.473  Sum_probs=47.2

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +||+|+.||.++|||||.|.+.++..+|+. ++++.++.|+|.|..+..+..
T Consensus       128 ~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~  179 (203)
T KOG0131|consen  128 KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT  179 (203)
T ss_pred             cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence            588999999999999999999999999999 999999999999999876544

>KOG0127|consensus

Probab=98.13  E-value=2.5e-06  Score=76.19  Aligned_cols=51  Identities=20%  Similarity=0.426  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++-+.++.+ |||||+|....++..|++ ++++.|+||+|-|++|.+++
T Consensus       146 Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd  197 (678)
T KOG0127|consen  146 EIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD  197 (678)
T ss_pred             EEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence            6788877765555 999999999999999999 99999999999999999875

>smart00362 RRM_2 RNA recognition motif

Probab=98.11  E-value=7e-06  Score=54.29  Aligned_cols=44  Identities=32%  Similarity=0.573  Sum_probs=37.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ   47 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~   47 (300)
                      ++.++.++  +.++|+|||+|.+.+++.+|++ +++..++|+++.|+
T Consensus        28 ~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362       28 SVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             EEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            35566665  8899999999999999999999 88899999988763

>KOG0147|consensus

Probab=98.10  E-value=2.8e-06  Score=75.98  Aligned_cols=52  Identities=35%  Similarity=0.535  Sum_probs=46.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .|.+++|.+||++||||||+|.+.+++.+|++ +|+.+|-||.|+|..-+.+.
T Consensus       307 ~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~  359 (549)
T KOG0147|consen  307 NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV  359 (549)
T ss_pred             eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence            36788999999999999999999999999988 99999999999998766543

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=98.08  E-value=5.8e-06  Score=70.37  Aligned_cols=105  Identities=20%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC----Cchhhhhhhhhhhhhhhhhhhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS----HNSQVKKKIETKETASFSRMAENME   76 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~----~~~~~~~~~~~~~~~~~~~~~~~l~   76 (300)
                      .+.++.|+.||++||||||+|.+++++..|+. +++..+.|+++.|..+.+    +...... ..........  ...-.
T Consensus       144 ~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~  220 (306)
T COG0724         144 RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-LDASFAKKLS--RGKAL  220 (306)
T ss_pred             EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-cchhhhcccc--ccccc
Confidence            57889999999999999999999999999999 889999999999999653    1111100 0000000000  00001


Q ss_pred             hHHHHHhhhhcccccCCChHHHHHHHHhhcccc
Q psy633           77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQAT  109 (300)
Q Consensus        77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~  109 (300)
                      ........++.++........+...+..++...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (306)
T COG0724         221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV  253 (306)
T ss_pred             cccccceeeccccccccchhHHHHhccccccce
Confidence            112223335666667777788888887777663

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.98  E-value=1.1e-05  Score=65.69  Aligned_cols=46  Identities=13%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      +|+|++|.   +++|||||+|.++++++.|+.++|..|.+++|.|.++.
T Consensus        34 ~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~   79 (243)
T PLN03121         34 HVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG   79 (243)
T ss_pred             EEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence            57888884   55689999999999999999999999999999998865

>KOG0705|consensus

Probab=97.89  E-value=2.2e-05  Score=70.88  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD  263 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~  263 (300)
                      .-+.+|.|+||.|+.-+...+.+||+- +|+|+..+|..|+|+|.||-..|..+|+.+||. +|+.
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sqec~d~llq-~gcp  719 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQECIDVLLQ-YGCP  719 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcccHHHHHHHHH-cCCC
Confidence            346678999999999888889999997 999999999999999999999999999999999 8874

>KOG0521|consensus

Probab=97.89  E-value=7e-06  Score=78.99  Aligned_cols=72  Identities=33%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             CCCcccc--CcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          227 DFNINQL--DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       227 ~~~~~~~--d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++.+|..  -..|.|+||.|+..|..-++++|++ .|+++|..|..|+||||.+...|+...+.+|+++||+.++
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a  717 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA  717 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc
Confidence            4555543  3458999999999999999999999 9999999999999999999999999999999999999875

>KOG0818|consensus

Probab=97.89  E-value=2.7e-05  Score=69.05  Aligned_cols=67  Identities=24%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             ccCcCCch------HHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          232 QLDENGLN------CLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       232 ~~d~~g~t------~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .+|.+|.|      -||..+..|+.+.+--||. .||++|..+ ..|.||||.|++.|+..-+++|+-+|||+..
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a  195 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA  195 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC
Confidence            35555544      5888999999999999999 999999988 6799999999999999999999999999874

>KOG0511|consensus

Probab=97.84  E-value=9.4e-05  Score=63.68  Aligned_cols=58  Identities=31%  Similarity=0.438  Sum_probs=55.3

Q ss_pred             chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .--|..||+.|..+.|++|++ .|.+||+.|.....||.+|+.+||..+|++|+++||-
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            446889999999999999999 9999999999999999999999999999999999984

>KOG0147|consensus

Probab=97.82  E-value=2.3e-05  Score=70.22  Aligned_cols=106  Identities=16%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      +|+++.|+.++++||.|||+|.|.+.+..||.+.|+.+-|-+|.|.....-...  .+...   +.++  +.....+|..
T Consensus       208 dVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr--~a~~s---~a~~--~k~~~~p~~r  280 (549)
T KOG0147|consen  208 DVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNR--AANAS---PALQ--GKGFTGPMRR  280 (549)
T ss_pred             eeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHH--HHhcc---cccc--ccccccchhh
Confidence            689999999999999999999999999999999999999999999775422111  00000   0011  0122223333


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID  116 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~  116 (300)
                        .+|+++-..++++++...|..|+.+.......+
T Consensus       281 --l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d  313 (549)
T KOG0147|consen  281 --LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD  313 (549)
T ss_pred             --hhhcccccCchHHHHhhhccCcccceeeeeccc
Confidence              589999999999999999999998877665554

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.79  E-value=6.3e-05  Score=49.88  Aligned_cols=45  Identities=33%  Similarity=0.620  Sum_probs=38.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ   47 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~   47 (300)
                      .+.++.++.+ +++|+|||+|.+.+++..|++ +++..++|+.+.|.
T Consensus        28 ~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~   73 (74)
T cd00590          28 SVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE   73 (74)
T ss_pred             EEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence            3566677655 789999999999999999999 88888999998875

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0506|consensus

Probab=97.79  E-value=1.8e-05  Score=69.79  Aligned_cols=63  Identities=21%  Similarity=0.388  Sum_probs=57.0

Q ss_pred             cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCCC
Q psy633          235 ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS-GAHSS  298 (300)
Q Consensus       235 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~  298 (300)
                      ..+..++++|+..|.+..++-+.- .|.|++.+|.+.+|+||+|+..||.+++++|++. +.+++
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~  567 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD  567 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHHHcCCCC
Confidence            456779999999999999988888 8999999999999999999999999999999984 66665

>KOG0144|consensus

Probab=97.77  E-value=3e-05  Score=67.53  Aligned_cols=56  Identities=25%  Similarity=0.451  Sum_probs=46.9

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC--ccceecCCCCCchhhh
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG--SRLSIQPSDSHNSQVK   57 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g--~~~~v~~a~~~~~~~~   57 (300)
                      .+|.|++|. .|.|||++||+|.+.|-+..||+ +|+ ++++|  .++-|+.|+++.....
T Consensus       152 ed~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~  211 (510)
T KOG0144|consen  152 EDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG  211 (510)
T ss_pred             chhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence            368899995 69999999999999999999999 876 67888  5799999987765433

>KOG4212|consensus

Probab=97.76  E-value=2.8e-05  Score=67.83  Aligned_cols=46  Identities=24%  Similarity=0.538  Sum_probs=42.7

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      |++.+| .+|++||.+.|+|+++|.+++|++ ++.+.++||++.|+.-
T Consensus        75 veLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd  121 (608)
T KOG4212|consen   75 VELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED  121 (608)
T ss_pred             eeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence            678889 689999999999999999999999 9999999999999764

>KOG0121|consensus

Probab=97.75  E-value=4.4e-05  Score=55.50  Aligned_cols=46  Identities=15%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      .+-.|+.+..+-|||||+|-+.+++..|+. +++..++.|+|.+.+-
T Consensus        67 iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D  113 (153)
T KOG0121|consen   67 IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD  113 (153)
T ss_pred             EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence            344799999999999999999999999999 9999999999999774

>KOG0130|consensus

Probab=97.72  E-value=2.1e-05  Score=57.59  Aligned_cols=52  Identities=19%  Similarity=0.354  Sum_probs=47.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .+.+-.|+.||..|||+.|+|++.+.+++|+. +|+..|-|..|.|.++..+.
T Consensus       101 NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g  153 (170)
T KOG0130|consen  101 NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG  153 (170)
T ss_pred             ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence            35677899999999999999999999999999 99999999999999986543

>KOG0107|consensus

Probab=97.72  E-value=2.4e-05  Score=60.05  Aligned_cols=40  Identities=25%  Similarity=0.484  Sum_probs=36.0

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      .+-||+||+|+++.+|++|+. +++..|+|..|.|..+.-+
T Consensus        45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~   85 (195)
T KOG0107|consen   45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR   85 (195)
T ss_pred             cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence            477999999999999999999 9999999999888877644

>smart00248 ANK ankyrin repeats

Probab=97.67  E-value=9.2e-05  Score=39.05  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=18.6

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          271 GDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       271 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      |.||||+|+..++.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5666777766666777776666666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0109|consensus

Probab=97.61  E-value=5.4e-05  Score=62.72  Aligned_cols=73  Identities=18%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccCC
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKL   93 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~~   93 (300)
                      |.||||..++...+..||. +++-+|+|..|.|..++.|.     + .+.++                   +|.++...+
T Consensus        36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-----k-~stkl-------------------~vgNis~tc   90 (346)
T KOG0109|consen   36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-----K-ASTKL-------------------HVGNISPTC   90 (346)
T ss_pred             cccceEEeecccccHHHHhhcccceecceEEEEEeccccC-----C-Ccccc-------------------ccCCCCccc
Confidence            4499999999999999999 99999999999999887661     1 22233                   899999999


Q ss_pred             ChHHHHHHHHhhccccccc
Q psy633           94 DSSTLLKFYALYKQATVGQ  112 (300)
Q Consensus        94 ~~~~~~~~~~~~k~~~~g~  112 (300)
                      .++++...|..|+.+...+
T Consensus        91 tn~ElRa~fe~ygpviecd  109 (346)
T KOG0109|consen   91 TNQELRAKFEKYGPVIECD  109 (346)
T ss_pred             cCHHHhhhhcccCCceeee
Confidence            9999999999999876443

>KOG0117|consensus

Probab=97.61  E-value=0.00011  Score=64.44  Aligned_cols=92  Identities=14%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             eEEEeeeC-CCCCccCeEEEEecChHHHHHHHh--cCC-ceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhh
Q psy633            2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFS--TDS-HVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMED   77 (300)
Q Consensus         2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~--~~~-~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (300)
                      +|.|..++ ++.++||||||+|.+...|.-|-.  +++ ..+.|..+.|.+|.|+...-....++.+.            
T Consensus       194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKv------------  261 (506)
T KOG0117|consen  194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKV------------  261 (506)
T ss_pred             EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheee------------
Confidence            45555444 477999999999999999988877  343 44889999999999886533223332221            


Q ss_pred             HHHHHhhhhcccccCCChHHHHHHHHhhcccccc
Q psy633           78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                            .||+++..+.++|.+.++|..|+.+.-.
T Consensus       262 ------LYVRNL~~~tTeE~lk~~F~~~G~veRV  289 (506)
T KOG0117|consen  262 ------LYVRNLMESTTEETLKKLFNEFGKVERV  289 (506)
T ss_pred             ------eeeeccchhhhHHHHHHHHHhccceEEe
Confidence                  2999999999999999999999776533

>KOG0145|consensus

Probab=97.49  E-value=0.00012  Score=59.66  Aligned_cols=47  Identities=21%  Similarity=0.553  Sum_probs=41.9

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCC
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSD   50 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~   50 (300)
                      +|..|..||.|||.|||.|+..++++.||. ++|+.=.|  .+|.|+.|.
T Consensus       158 RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan  207 (360)
T KOG0145|consen  158 RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN  207 (360)
T ss_pred             hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence            677899999999999999999999999999 99988766  478888875

>KOG0522|consensus

Probab=97.48  E-value=0.00026  Score=63.61  Aligned_cols=61  Identities=13%  Similarity=0.152  Sum_probs=50.1

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHh
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE  258 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  258 (300)
                      +..|..|.||||.|+.-++.....+|.. .|+++..++..||+|||-|+..|+.+++..+|.
T Consensus        49 d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   49 DRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             ccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            5567788999999887555445555555 599999999999999999999999999888876

>KOG0415|consensus

Probab=97.37  E-value=0.00017  Score=61.48  Aligned_cols=51  Identities=27%  Similarity=0.549  Sum_probs=47.5

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      .+|.|++|+.||-|--|+||+|++.+++++|.= |+...|+.|.|.|..+++
T Consensus       267 ~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS  318 (479)
T KOG0415|consen  267 VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS  318 (479)
T ss_pred             eeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence            478999999999999999999999999999975 999999999999998764

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.32  E-value=0.00041  Score=48.93  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceec
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE   40 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~   40 (300)
                      +.++.|..++.+.|||||.|.+++.+.+-.+ .++..+.
T Consensus        33 ~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~   71 (97)
T PF04059_consen   33 FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP   71 (97)
T ss_pred             EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence            4689999999999999999999999999887 7776665

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>smart00248 ANK ankyrin repeats

Probab=97.31  E-value=0.00044  Score=36.23  Aligned_cols=29  Identities=45%  Similarity=0.757  Sum_probs=25.6

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhhcCCCcc
Q psy633          236 NGLNCLHWACDRGHLKVVQHLIEKCGADVN  265 (300)
Q Consensus       236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~  265 (300)
                      .|.||||+|+..++.+++++|+. .|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~-~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLD-KGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            37899999999999999999999 887664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384|consensus

Probab=97.31  E-value=0.00063  Score=53.27  Aligned_cols=76  Identities=16%  Similarity=0.057  Sum_probs=60.3

Q ss_pred             CcccCcCcchHHHHHHhCCHHHHHHHHhhcCC-CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633          196 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKD-FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY  273 (300)
Q Consensus       196 ~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T  273 (300)
                      .+..|..|+|+++.|+..+..+++.+|+. .| +.+...|..|.+++.+|-..|+.+++..|.+ .-.+-...++.-.+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe-~~~ets~p~nss~~   81 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE-NDRETSHPMNSSRD   81 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHH-HhccCCCcccCCCC
Confidence            46678899999998877666666666666 57 8999999999999999999999999999998 65555444443333

>KOG0124|consensus

Probab=97.30  E-value=0.00024  Score=60.74  Aligned_cols=50  Identities=16%  Similarity=0.303  Sum_probs=46.6

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +.|.+.+++.++.+|||||++|.+..+...|+. ||-..++|.-++|.++.
T Consensus       238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v  288 (544)
T KOG0124|consen  238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV  288 (544)
T ss_pred             eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence            368999999999999999999999999999999 99999999999998875

>KOG4209|consensus

Probab=97.29  E-value=0.0003  Score=58.17  Aligned_cols=48  Identities=27%  Similarity=0.485  Sum_probs=44.5

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      +.|+.|+.+|.+|||+||+|.+.+.+..++.+++..|-|+.++|....
T Consensus       131 ~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r  178 (231)
T KOG4209|consen  131 VTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR  178 (231)
T ss_pred             eeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence            578999999999999999999999999999999999999999987654

>KOG2505|consensus

Probab=97.27  E-value=0.00057  Score=60.99  Aligned_cols=65  Identities=22%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHhhcCCCCccc------cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          213 GKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       213 ~~~~~v~~ll~~~~~~~~~~------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      +..+..++.|.. ++.+.|.      .+....|+||+|+..|...+|.+||+ .|+|+..+|..|+||.+++.
T Consensus       401 ~~~p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  401 KPEPDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cCchhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            445556666666 5665543      35557899999999999999999999 99999999999999999987

>KOG4211|consensus

Probab=97.22  E-value=0.00051  Score=61.09  Aligned_cols=94  Identities=15%  Similarity=0.249  Sum_probs=69.5

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhh-hhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV-KKKIETKETASFSRMAENMEDRFNQAC   83 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~F~~a~   83 (300)
                      ++.-+.+||..|=+||+|.++|++++|++.+...+..|-|+|-.+.+.+... .++..-.....             .-+
T Consensus        39 ~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~-------------d~v  105 (510)
T KOG4211|consen   39 LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSAN-------------DGV  105 (510)
T ss_pred             EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCC-------------Cce
Confidence            5566778999999999999999999999999999999999999887654321 11111000000             001


Q ss_pred             hhhcccccCCChHHHHHHHHhhcccccc
Q psy633           84 DYLPSLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                      ..+++|+.+++++++.++|+-...++.|
T Consensus       106 VRLRGLPfscte~dI~~FFaGL~Iv~~g  133 (510)
T KOG4211|consen  106 VRLRGLPFSCTEEDIVEFFAGLEIVPDG  133 (510)
T ss_pred             EEecCCCccCcHHHHHHHhcCCcccccc
Confidence            2567899999999999999987776663

>KOG0148|consensus

Probab=97.16  E-value=0.00063  Score=56.01  Aligned_cols=45  Identities=22%  Similarity=0.389  Sum_probs=38.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|+|.+|      +||+||.|++.|+|.+||. +|+.+|+|..|++.+.+..
T Consensus       193 EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~  238 (321)
T KOG0148|consen  193 EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG  238 (321)
T ss_pred             EEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence            4556555      5899999999999999998 9999999999999887644

>KOG0110|consensus

Probab=96.80  E-value=0.00091  Score=62.08  Aligned_cols=42  Identities=24%  Similarity=0.509  Sum_probs=38.9

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      ..|++|+||||-|.++++|++||. .|...|+-..|.|..|.+
T Consensus         4 ~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~~   46 (725)
T KOG0110|consen    4 KDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKS   46 (725)
T ss_pred             CCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehhh
Confidence            369999999999999999999999 899999999999988764

>KOG4206|consensus

Probab=96.36  E-value=0.01  Score=47.91  Aligned_cols=45  Identities=24%  Similarity=0.360  Sum_probs=41.5

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .|.+.||=|||.|.+.+.+..|+. ++|.-+-|+++++..|..+.+
T Consensus        47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sd   92 (221)
T KOG4206|consen   47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSD   92 (221)
T ss_pred             CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccc
Confidence            589999999999999999999998 999999999999999987654

>KOG4661|consensus

Probab=96.25  E-value=0.0049  Score=56.03  Aligned_cols=49  Identities=20%  Similarity=0.363  Sum_probs=44.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      -++|+++-.|---|.|||||+.+.+++.++|+ ++..+|.||.|.|..++
T Consensus       434 GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK  483 (940)
T KOG4661|consen  434 GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK  483 (940)
T ss_pred             ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence            35788888888889999999999999999999 99999999999998886

>KOG0114|consensus

Probab=95.92  E-value=0.017  Score=40.68  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=38.9

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .|...||-+||.|++-.+|.+|+. ++|..++++.+.|-..++-.
T Consensus        52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~   96 (124)
T KOG0114|consen   52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED   96 (124)
T ss_pred             CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence            456678999999999999999999 99999999999998877543

>KOG0105|consensus

Probab=95.26  E-value=0.067  Score=41.88  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh--h-----------------hhhhhhhhhhhhhh
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK--K-----------------KIETKETASFSRMA   72 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~--~-----------------~~~~~~~~~~~~~~   72 (300)
                      ..-+|+||+|+++.+++.||. .++-.++|..++|..+..-.....  .                 ..++..  .+    
T Consensus        43 g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrS--e~----  116 (241)
T KOG0105|consen   43 GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRS--EY----  116 (241)
T ss_pred             CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCccccc--ce----
Confidence            345699999999999999998 899999999999988764321100  0                 000000  00    


Q ss_pred             hhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhh
Q psy633           73 ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEA  125 (300)
Q Consensus        73 ~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~  125 (300)
                                ...|.+|+.+-+=.+|.+.+..-+.+-..++..+..|+.++..
T Consensus       117 ----------RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r  159 (241)
T KOG0105|consen  117 ----------RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLR  159 (241)
T ss_pred             ----------eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeee
Confidence                      0146788888888888888877776666665555566655543

>KOG2505|consensus

Probab=94.98  E-value=0.04  Score=49.67  Aligned_cols=49  Identities=22%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhcCCCccc------cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          250 LKVVQHLIEKCGADVNV------TDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ...+++|.+ .+++.|.      .+..-.|+||+|+..|..++|.+||+.|+|+.+
T Consensus       404 p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~  458 (591)
T KOG2505|consen  404 PDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST  458 (591)
T ss_pred             hhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh
Confidence            567888888 7776643      344567899999999999999999999999865

>KOG0109|consensus

Probab=94.95  E-value=0.018  Score=48.14  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=38.6

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK   57 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~   57 (300)
                      =|+|+||.|+-.+++..|+. +++.+++|+++.|..+++|-....
T Consensus       111 vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap  155 (346)
T KOG0109|consen  111 VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP  155 (346)
T ss_pred             ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence            36799999999999999998 999999999999999987755433

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.83  E-value=0.17  Score=41.16  Aligned_cols=91  Identities=24%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             chHHHHHHhCCHHHHHHHHhhcCCCCccccCcC----CchHHHHHH--HCCCHHHHHHHHhhcC-CCcccc---CCCCCc
Q psy633          204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN----GLNCLHWAC--DRGHLKVVQHLIEKCG-ADVNVT---DSDGDY  273 (300)
Q Consensus       204 ~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~----g~t~Lh~A~--~~g~~~~v~~Ll~~~g-~~~~~~---d~~g~T  273 (300)
                      .+++-.+.....+.+..+|..  .......|--    +.--+-++.  ..-...+.+++|. .| +++|.+   -+.|.|
T Consensus       180 ~~Am~~si~~~K~dva~~lls--~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~-~Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLS--KFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFIN-RGLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHh--hcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHh-ccccccchhhhccCCcch
Confidence            456667777777777777776  3343333321    222333332  3335778888888 55 677764   578999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          274 GLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       274 pL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      -|.-|..++..+++.+||++||-.
T Consensus       257 MLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  257 MLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHhHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999999943

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0106|consensus

Probab=94.29  E-value=0.023  Score=46.17  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhh-------hh-hhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVK-------KK-IETKETASFSRMAENMEDRFNQACD   84 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~F~~a~~   84 (300)
                      -.|||||.|.+..++..|+. +++..+.|..+.|..+........       +. ......        +..   .....
T Consensus        34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~--------p~~---s~~r~  102 (216)
T KOG0106|consen   34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRP--------PSR---THFRL  102 (216)
T ss_pred             ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCC--------ccc---cccee
Confidence            35899999999999999998 999999998877777764321110       00 110000        000   00011


Q ss_pred             hhcccccCCChHHHHHHHHhhccccccc
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQ  112 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~  112 (300)
                      .+..+...+...++.+.|..+++++.-.
T Consensus       103 ~~~~~~~r~~~qdl~d~~~~~g~~~~~~  130 (216)
T KOG0106|consen  103 IVRNLSLRVSWQDLKDHFRPAGEVTYVD  130 (216)
T ss_pred             eeccchhhhhHHHHhhhhcccCCCchhh
Confidence            3445555677788999999999985543

>KOG1995|consensus

Probab=94.25  E-value=0.033  Score=48.04  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .+.|-+|++|+++||=|.|+|+|.-.++.|+. .++..+.|.+|+|..|..+.
T Consensus       103 ki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~  155 (351)
T KOG1995|consen  103 KIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT  155 (351)
T ss_pred             chhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence            35678999999999999999999999999999 89999999999998887554

>KOG3609|consensus

Probab=93.87  E-value=0.24  Score=47.78  Aligned_cols=62  Identities=13%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCc----------cccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNI----------NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT  267 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~----------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~  267 (300)
                      |.-+|++.+.+-.+. +++++. +....          ...-..+.|||++||..++.+|+++||. .|+.+...
T Consensus        89 gdALL~aI~~~~v~~-VE~ll~-~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~-kg~~i~~P  160 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPL-VELLLV-HFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT-RGHCIPIP  160 (822)
T ss_pred             chHHHHHHHHHHHHH-HHHHHh-cccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH-cCCCCCCC
Confidence            555666655555554 444444 22211          1223457899999999999999999999 88876553

>KOG1457|consensus

Probab=93.39  E-value=0.14  Score=41.35  Aligned_cols=45  Identities=22%  Similarity=0.341  Sum_probs=33.8

Q ss_pred             eCCCCCccCeEEEEecChHHHHHHHh-cCCceec---CccceecCCCCC
Q psy633            8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLE---GSRLSIQPSDSH   52 (300)
Q Consensus         8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~~~~v~~a~~~   52 (300)
                      ++...-.+-+|||+|.+...+.+|++ ++|..++   +..+++..|+..
T Consensus        70 sk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSN  118 (284)
T KOG1457|consen   70 SKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSN  118 (284)
T ss_pred             cCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcC
Confidence            33334455799999999999999998 8988876   456666666543

>KOG0146|consensus

Probab=93.22  E-value=0.17  Score=42.00  Aligned_cols=48  Identities=25%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC--ccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG--SRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g--~~~~v~~a~   50 (300)
                      +|.|.+.+ .|.|||.+||.|.+.-+++.||. +++ .++-|  ..+.|+.|+
T Consensus        48 e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD   99 (371)
T KOG0146|consen   48 ECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD   99 (371)
T ss_pred             eeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence            56666664 68999999999999999999998 765 45655  456777765

>KOG0153|consensus

Probab=92.59  E-value=0.1  Score=44.93  Aligned_cols=38  Identities=37%  Similarity=0.538  Sum_probs=34.0

Q ss_pred             ccCeEEEEecChHHHHHHHh--cCCceecCccceecCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS--TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~--~~~~~~~g~~~~v~~a~~   51 (300)
                      .+|.+||+|.+.++++.|.+  .+...|+|++|.|.+..+
T Consensus       263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence            45799999999999999998  677889999999998877

>KOG4210|consensus

Probab=92.34  E-value=0.061  Score=46.15  Aligned_cols=53  Identities=19%  Similarity=0.411  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .++++.++.|+.++|||||.|........++....+.+.|+++.+....++..
T Consensus       214 ~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (285)
T KOG4210|consen  214 SVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPK  266 (285)
T ss_pred             eeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCcc
Confidence            46788999999999999999999999888886667889999999988877643

>KOG1548|consensus

Probab=92.11  E-value=0.2  Score=43.19  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=42.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      |++.+|.. |+.||=|.+.|--.++|.-|++ +++..+.|+.|+|.+|+
T Consensus       172 ~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk  219 (382)
T KOG1548|consen  172 VKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK  219 (382)
T ss_pred             EEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence            55666643 8899999999999999999999 89999999999999987

>KOG1548|consensus

Probab=91.89  E-value=0.32  Score=41.91  Aligned_cols=47  Identities=26%  Similarity=0.470  Sum_probs=40.3

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .++.|+   .+.|-.-|+|.+.++|+.+|+ |+|..++||+|.......+.
T Consensus       306 vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t  353 (382)
T KOG1548|consen  306 VVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT  353 (382)
T ss_pred             EEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence            466775   588999999999999999999 99999999999987766543

>KOG4211|consensus

Probab=91.50  E-value=0.18  Score=45.50  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      +.+++|+ .+++-|=+||.|++.+.+++|+..+...|+.|-|+|-++.
T Consensus       134 i~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss  180 (510)
T KOG4211|consen  134 ILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS  180 (510)
T ss_pred             eeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence            3456675 5779999999999999999999988899999999987765

>KOG4454|consensus

Probab=91.44  E-value=0.15  Score=41.08  Aligned_cols=45  Identities=18%  Similarity=0.185  Sum_probs=37.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      |.|+.++ .++.| |+||.|.++-.+.-|++ ++|..+.|+.+.++.-
T Consensus        39 v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r   84 (267)
T KOG4454|consen   39 VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR   84 (267)
T ss_pred             EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence            4455554 46677 99999999999999999 8999999998887653

>KOG2314|consensus

Probab=91.44  E-value=0.24  Score=45.45  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG   41 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g   41 (300)
                      ..++.|.++| ++||.|++|.+..+|+.|++ ++|+.|+-
T Consensus        94 ~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk  132 (698)
T KOG2314|consen   94 MYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK  132 (698)
T ss_pred             eeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence            4567786666 99999999999999999998 78777764

>KOG0120|consensus

Probab=91.28  E-value=0.14  Score=46.98  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=45.5

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .++.|..||-++||+|.+|.++-....|+. ++|..+.++++.|..|.+..
T Consensus       320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~  370 (500)
T KOG0120|consen  320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA  370 (500)
T ss_pred             eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence            578899999999999999999999999999 99999999999998887543

>KOG4210|consensus

Probab=91.25  E-value=0.26  Score=42.32  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=68.9

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHhcCC-ceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDS-HVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQAC   83 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~-~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~   83 (300)
                      ......+..++||++|.|...+.+..++.+.+ ..+.++.+.......+......+..+...             +....
T Consensus       120 ~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~-------------~~s~~  186 (285)
T KOG4210|consen  120 SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSS-------------GPSDT  186 (285)
T ss_pred             hhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhccccc-------------Ccccc
Confidence            33445678999999999999999999999666 57777777776666554211111111100             00011


Q ss_pred             h-hhcccccCCChHHHHHHHHhhcccccccCCCCCC
Q psy633           84 D-YLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP  118 (300)
Q Consensus        84 ~-~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p  118 (300)
                      . ++.++....+.+++...|...+.++...+....+
T Consensus       187 ~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~  222 (285)
T KOG4210|consen  187 IFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE  222 (285)
T ss_pred             ceeecccccccchHHHhhhccCcCcceeeccCCCCC
Confidence            1 4888899999999998998888888887766544

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=90.82  E-value=0.44  Score=32.47  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +.|-|.|.|.+++.|.+|.+ |++..+-|++|.|....
T Consensus        38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen   38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred             eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence            35789999999999999999 99999999999998763

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.52  E-value=0.66  Score=31.15  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=10.6

Q ss_pred             HHHHHHHCCCHHHHHHHHh
Q psy633          240 CLHWACDRGHLKVVQHLIE  258 (300)
Q Consensus       240 ~Lh~A~~~g~~~~v~~Ll~  258 (300)
                      +|..|...-+.+++++|++
T Consensus        35 ~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHH
Confidence            4555555555555555555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0116|consensus

Probab=90.51  E-value=0.21  Score=45.08  Aligned_cols=40  Identities=28%  Similarity=0.549  Sum_probs=34.1

Q ss_pred             CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~   51 (300)
                      +++.+||||+|.+.++++.|++.+...|+|+++.|..-.+
T Consensus       327 ~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~  366 (419)
T KOG0116|consen  327 GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP  366 (419)
T ss_pred             CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence            4444999999999999999999888999999999876443

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=89.65  E-value=0.38  Score=36.52  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             EEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633           18 GFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        18 gfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~   51 (300)
                      =+|||.+.+.|-+|+.++|..++|+.+.|+.-.|
T Consensus        73 mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp  106 (146)
T PF08952_consen   73 MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP  106 (146)
T ss_dssp             EEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred             EEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence            4899999999999999999999999999876443

; PDB: 1UFW_A 2DNR_A.

>KOG0106|consensus

Probab=89.21  E-value=0.2  Score=40.83  Aligned_cols=36  Identities=28%  Similarity=0.630  Sum_probs=32.9

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      .++|+||.|.+.+++.+|+. +++..+.|+.|.+-.+
T Consensus       132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~  168 (216)
T KOG0106|consen  132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN  168 (216)
T ss_pred             hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence            58999999999999999999 9999999999999443

>KOG1190|consensus

Probab=88.18  E-value=1.2  Score=39.51  Aligned_cols=101  Identities=14%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhh----------hhhhhhhhhhhhh
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKK----------KIETKETASFSRM   71 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~----------~~~~~~~~~~~~~   71 (300)
                      |.|.+.+.     -=+.|.|.|..-++-|++ ++++.|-|++|+|..++-...+.++          .....-+.+|.+.
T Consensus       328 Vkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkp  402 (492)
T KOG1190|consen  328 VKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKP  402 (492)
T ss_pred             EEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCc
Confidence            45555543     358999999999999999 9999999999999887633222111          1111111222211


Q ss_pred             h-hhhhhHH-HHHhhhhcccccCCChHHHHHHHHhhccc
Q psy633           72 A-ENMEDRF-NQACDYLPSLVKKLDSSTLLKFYALYKQA  108 (300)
Q Consensus        72 ~-~~l~~~F-~~a~~~v~~~~~~~~~~~~~~~~~~~k~~  108 (300)
                      + +...--| ..|..+..+++.++++|++..+|...+-.
T Consensus       403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~  441 (492)
T KOG1190|consen  403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQ  441 (492)
T ss_pred             ccccccccCCchhheeeccCCcccchhHHHHhhhcCCce
Confidence            1 1111122 23455778889999999999999876533

>KOG1365|consensus

Probab=86.77  E-value=1.6  Score=38.37  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhccc
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSL   89 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~   89 (300)
                      ..|+.-|-+.|.|.|+|.-+-|++.+.|.+.+|.|+|-.+.+..--.-.--...+...|-.       .=.+....++++
T Consensus        97 ~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~fls-------k~~qvivRmRGL  169 (508)
T KOG1365|consen   97 AQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLS-------KENQVIVRMRGL  169 (508)
T ss_pred             hhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCC-------cccceEEEecCC
Confidence            4578889999999999999999998899999999999888754311000000000000000       000112256789


Q ss_pred             ccCCChHHHHHHHHhhcccc
Q psy633           90 VKKLDSSTLLKFYALYKQAT  109 (300)
Q Consensus        90 ~~~~~~~~~~~~~~~~k~~~  109 (300)
                      +.+..+.+.+++|+..-.++
T Consensus       170 Pfdat~~dVv~FF~~~cpv~  189 (508)
T KOG1365|consen  170 PFDATALDVVEFFGPPCPVT  189 (508)
T ss_pred             CCCcchHHHHHhcCCCCccc
Confidence            99999999999997443333

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.60  E-value=1.6  Score=34.54  Aligned_cols=47  Identities=23%  Similarity=0.450  Sum_probs=40.6

Q ss_pred             hHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633          239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       239 t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  292 (300)
                      .-|.+|+..|....+.-.|+ +|.+++.      +.|..|+..+|..|+.+++.
T Consensus       145 ~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  145 QHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            35678999999999988888 8888764      79999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0132|consensus

Probab=86.33  E-value=0.68  Score=44.29  Aligned_cols=41  Identities=10%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      -+||.|||.+....+|.+|+. |..+.+.++.|+|.+|..+.
T Consensus       455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G  496 (894)
T KOG0132|consen  455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG  496 (894)
T ss_pred             cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence            479999999999999999998 89999999999999997553

>KOG4849|consensus

Probab=86.14  E-value=0.7  Score=39.92  Aligned_cols=47  Identities=15%  Similarity=0.372  Sum_probs=39.2

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      ++...++..|+||||+.|...++.++.+.++ +...+|.|..-.|-..
T Consensus       112 mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~  159 (498)
T KOG4849|consen  112 MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY  159 (498)
T ss_pred             hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence            3445678899999999999999999999999 8889999976555443

>KOG1365|consensus

Probab=85.68  E-value=0.42  Score=41.80  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             eCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhh--hhhhhhhhhh-hhhhhHH-----
Q psy633            8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET--KETASFSRMA-ENMEDRF-----   79 (300)
Q Consensus         8 d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~F-----   79 (300)
                      -+..||.-|=+||.|..+++++.|+..+...|+-|-|++-+++..+.+..-+...  ..+...+... ..+...+     
T Consensus       199 ~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~  278 (508)
T KOG1365|consen  199 TRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTR  278 (508)
T ss_pred             ECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCC
Confidence            3457999999999999999999999999999999999988776544322111110  1111100000 0000001     


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcc
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQ  107 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~  107 (300)
                      .+-|..+++++.+..-++.+++++.|-.
T Consensus       279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~  306 (508)
T KOG1365|consen  279 SKDCVRLRGLPYEATVEDILDFLGDFAT  306 (508)
T ss_pred             CCCeeEecCCChhhhHHHHHHHHHHHhh
Confidence            1445577889989999999999998853

>KOG0128|consensus

Probab=85.40  E-value=0.6  Score=45.06  Aligned_cols=65  Identities=14%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             eCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhc
Q psy633            8 DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLP   87 (300)
Q Consensus         8 d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~   87 (300)
                      -..+++.||+|||.|.+++++.+|+.++...+-|                                       +...+++
T Consensus       702 h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------------------------------------K~~v~i~  742 (881)
T KOG0128|consen  702 HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------------------------------------KISVAIS  742 (881)
T ss_pred             HhhccccccceeeEeecCCchhhhhhhhhhhhhh---------------------------------------hhhhhee
Confidence            3468999999999999999999999855443333                                       1112788


Q ss_pred             ccccCCChHHHHHHHHhhcccccc
Q psy633           88 SLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                      +.++..+.+.+..++..++.++.-
T Consensus       743 g~pf~gt~e~~k~l~~~~gn~~~~  766 (881)
T KOG0128|consen  743 GPPFQGTKEELKSLASKTGNVTSL  766 (881)
T ss_pred             CCCCCCchHHHHhhccccCCcccc
Confidence            888888888888888877776644

>KOG0533|consensus

Probab=85.34  E-value=1.3  Score=36.97  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=40.6

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      |=+| .+|+|.|-|=|+|...+++.+|++ .++..++|+.+.+....+.
T Consensus       115 vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~  162 (243)
T KOG0533|consen  115 VHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP  162 (243)
T ss_pred             eccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence            4456 589999999999999999999999 8999999999888776544

>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi)

Probab=83.20  E-value=0.28  Score=33.93  Aligned_cols=69  Identities=16%  Similarity=0.281  Sum_probs=43.0

Q ss_pred             EEEEecChHHHHHHHhcCCce--ecCccceecCC--CCCc---hhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633           18 GFVTFQNKEAVDKVFSTDSHV--LEGSRLSIQPS--DSHN---SQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV   90 (300)
Q Consensus        18 gfv~f~~~~~~~~a~~~~~~~--~~g~~~~v~~a--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~   90 (300)
                      |.|||.+++.|++.+++..|.  +++..+.|...  .-..   -+..-.++++..                   -+.+++
T Consensus         1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtV-------------------lvsgip   61 (88)
T PF07292_consen    1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTV-------------------LVSGIP   61 (88)
T ss_pred             CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEE-------------------EEeCCC
Confidence            579999999999999865544  56666555332  1111   011111222222                   577888


Q ss_pred             cCCChHHHHHHHHhh
Q psy633           91 KKLDSSTLLKFYALY  105 (300)
Q Consensus        91 ~~~~~~~~~~~~~~~  105 (300)
                      ..+++|.+++....+
T Consensus        62 ~~l~ee~l~D~LeIh   76 (88)
T PF07292_consen   62 DVLDEEELRDKLEIH   76 (88)
T ss_pred             CCCChhhheeeEEEE
Confidence            889999998877654

This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].

>KOG0120|consensus

Probab=81.10  E-value=2.5  Score=39.02  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=36.2

Q ss_pred             eEEEeee---CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            2 NASVMFD---KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d---~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      +|+|+++   ..-.-.-|=-||+|.+.+++++|++ |.|..++||.|.....
T Consensus       438 ~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy  489 (500)
T KOG0120|consen  438 SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY  489 (500)
T ss_pred             EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence            4556655   1222333456999999999999999 9999999999887654

>KOG2202|consensus

Probab=80.98  E-value=0.92  Score=37.62  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633           11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus        11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      .-.-+|=.||.|..++++++|++ +++..++|++|.....
T Consensus       106 ~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~  145 (260)
T KOG2202|consen  106 GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS  145 (260)
T ss_pred             chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence            34457888999999999999999 9999999999887654

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=80.34  E-value=5.1  Score=29.34  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=53.3

Q ss_pred             hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC---CC-------------ccc-------hhhhHHH---
Q psy633           76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK---PS-------------WYN-------MEAKSKY---  129 (300)
Q Consensus        76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~---p~-------------~~~-------~~~~~k~---  129 (300)
                      +--|.++...+-.-.-.++.++...|.++.=|+..|+.+...   .+             ++.       ......|   
T Consensus        12 ~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~   91 (126)
T PF00373_consen   12 HLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEKR   91 (126)
T ss_dssp             HHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHHHHH
Confidence            445666666554444488999999999999999999877221   11             111       1233344   


Q ss_pred             --HHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633          130 --NAWNSLGQMAKSEAMSKYIALLNEV  154 (300)
Q Consensus       130 --~aw~~~~~~~~~~a~~~yi~~v~~l  154 (300)
                        ..|.++.+++..+|+..|++++..+
T Consensus        92 I~~~~~~l~~~s~~~a~~~fl~~~~~~  118 (126)
T PF00373_consen   92 ILEQHKKLRGMSPEEAKLQFLQICQSL  118 (126)
T ss_dssp             HHHHHHHTTT--HHHHHHHHHHHHCTS
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence              5688999999999999999999764

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
2cop_A	109	Solution Structure Of Rsgi Ruh-040, An Acbp Domain		3e-15
3flv_A	119	The Crystal Structure Of Human Acyl-Coenzymea Bindi		5e-11
2wh5_A	106	Crystal Structure Of Human Acyl-Coa Binding Domain		6e-11
2cqu_A	116	Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co		2e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
1hbk_A	89	Acyl-Coa Binding Protein From Plasmodium Falciparum		1e-08
1st7_A	86	Solution Structure Of Acyl Coenzyme A Binding Prote		2e-08
2lbb_A	96	Solution Structure Of Acyl Coa Binding Protein From		2e-08
2fdq_A	86	Crystal Structure Of Acbp From Armadillo Harderian		4e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-08
1hb6_A	86	Structure Of Bovine Acyl-Coa Binding Protein In Ort		4e-08
2fj9_A	86	High Resolution Crystal Structure Of The Unliganded		8e-08
2cb8_A	87	High Resolution Crystal Structure Of Liganded Human		9e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
3fp5_A	106	Crystal Structure Of Acbp From Moniliophthora Perni		4e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-06
3epy_A	89	Crystal Structure Of Human Acyl-Coa Binding Domain		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		9e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		9e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-04
1l3k_A	196	Up1, The Two Rna-Recognition Motif Domain Of Hnrnp		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-04
1pgz_A	195	Crystal Structure Of Up1 Complexed With D(Ttagggtta		2e-04
2lyv_A	197	Solution Structure Of The Two Rrm Domains Of Hnrnp		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
2up1_A	183	Structure Of Up1-Telomeric Dna Complex Length = 183		2e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-04
2dh8_A	105	Solution Structure Of The N-Terminal Rna Binding Do		3e-04
2cjk_A	167	Structure Of The Rna Binding Domain Of Hrp1 In Comp		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-04

>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 69  SRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSK 128
           S  +  + + F +A  +L  L++      LL  YA YKQ  VG CN  KPS+++ E K K
Sbjct: 2   SSGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQK 61
Query: 129 YNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
           + AW +LG  + S+AM +YIA++ ++D GW  +  E+
Sbjct: 62  WEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEK 98

>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 76  EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           E RF  A   + SL K    +  +  +LKFY+ YKQAT G C + +P +++   + K++A
Sbjct: 25  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 132 WNSLGQMAKSEAMSKYIALLNEV 154
           W+SLG M K EAM  Y+  + ++
Sbjct: 85  WSSLGDMTKEEAMIAYVEEMKKI 107

>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 98  LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV 154
           +L+FY+ YKQAT+G C + +P +++   + K++AWNSLG+M++ EAMS YI  +  V
Sbjct: 35  MLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 91

>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 99  LKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 148
           LK YALYKQAT G CN+ KP  +++  K+K++AWN+LG + K  A   Y+
Sbjct: 40  LKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLI 257
           D    ++  AKEG      K++ KL   K  ++N  D +G   LH+A   GH ++V+ LI
Sbjct: 36  DGRTPLHYAAKEGH-----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Query: 258 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            K GADVN  DSDG   L YA    H ++++ L++ GA
Sbjct: 91  SK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127

>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 74  NMEDRFNQACDYLPSLVKKLDSSTLLKF--YALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           +M   F +   ++  L + ++    LK   Y  YKQ+T+G CNI +PS +    + KY A
Sbjct: 1   HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
           W S+  + + +A  +Y+ +++E+   W+D
Sbjct: 61  WKSVENLNREDAQKRYVDIVSEIFPYWQD 89

>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From Yeast Length = 86

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 81  QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAK 140
           +A + LP+   K  +  LL+ YALYKQATVG  + +KP  +NM+ + K+ AW +L   ++
Sbjct: 10  KAVNELPT---KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQ 66
Query: 141 SEAMSKYIALLNEVDAGW 158
            +A  +YIAL++++ A +
Sbjct: 67  EDAEKEYIALVDQLIAKY 84

>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 77  DRFNQACDYLPSLVKKLDSST-LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
           D F+ A  Y+ +    + S+   L FY  YKQATVG CN  KP    ++ K K+ AWN+L
Sbjct: 12  DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNAL 71
Query: 136 GQMAKSEAMSKYIALLNEVDAGWED 160
             M+   A   Y+ LL+ +   W +
Sbjct: 72  RGMSTESAKEAYVKLLDTLAPSWRN 96

>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland Length = 86

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 79  FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
           F++A + + +L  K     +L  Y+ YKQATVG  N ++P   + + K+K++AWN L   
Sbjct: 5   FDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
           +K +AM  YI  + E+
Sbjct: 65  SKEDAMKSYIDKVEEL 80

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N +D+ G+  LH A  RGHL++V+ L+ K GADVN +DS G   L  A  + H +++E
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 98  VLLEYGA 104

>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Orthorhombic Crystal Form Length = 86

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 79  FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
           F++A + +  L  K     +L  Y+ YKQATVG  N ++P   + + K+K++AWN L   
Sbjct: 5   FDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
           +K +AM  YI  + E+
Sbjct: 65  SKEDAMKAYIDKVEEL 80

>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human Acbp Length = 86

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 79  FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
           F +A + +  L  K     +L  Y  YKQATVG  N ++P   +   K+K++AWN L   
Sbjct: 5   FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 64
Query: 139 AKSEAMSKYIALLNEV 154
           +K +AM  YI  + E+
Sbjct: 65  SKEDAMKAYINKVEEL 80

>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp Length = 87

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 79  FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
           F +A + +  L  K     +L  Y  YKQATVG  N ++P   +   K+K++AWN L   
Sbjct: 6   FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
Query: 139 AKSEAMSKYIALLNEV 154
           +K +AM  YI  + E+
Sbjct: 66  SKEDAMKAYINKVEEL 81

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D    ++  A+EG L++ V+ L K    ++N  D++G   LH A   GHL++V+ L+ K 
Sbjct: 34  DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 90
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D DG   L  A    H +++E L+ +GA
Sbjct: 91  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G+ D +  ++      ++N LDE+GL  LH A   GHL++V+ L+ K GAD
Sbjct: 16  KKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VN  D+ G   L  A    H +++E L+  GA
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D    ++  A+EG L+ +V+ L K    ++N  D++G   LH A   GHL++V+ L+ K 
Sbjct: 46  DGYTPLHLAAREGHLE-IVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 102
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D DG   L  A    H +++E L+ +GA
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D    ++  A+EG L++ V+ L K    ++N  D++G   LH A   GHL++V+ L+ K 
Sbjct: 34  DGYTPLHLAAREGHLEI-VEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 90
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D DG   L  A    H +++E L+ +GA
Sbjct: 91  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A+ G+ D +  ++      ++N  D +GL  LH A   GHL++V+ L+ K 
Sbjct: 13  DLGKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D  G   L  A  I H +++E L+  GA
Sbjct: 70  GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  D  G+  LH A DRGHL+VV+ L+ K GADVN  D +G   L  A  I H +++E
Sbjct: 72  DVNADDSLGVTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 131 VLLKHGA 137

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 220 KQLTKL---KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 276
           K++ KL   K  ++N  D +G   LH A + GH +VV+ LI K GADVN  DSDG   L 
Sbjct: 50  KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLH 108
Query: 277 YAKAIEHTDLIEYLVNSGA 295
           +A    H ++++ L++ GA
Sbjct: 109 HAAENGHKEVVKLLISKGA 127

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A+ G+ D +  ++      ++N  D +GL  LH A   GHL++V+ L+ K 
Sbjct: 13  DLGKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D  G   L  A  I H +++E L+  GA
Sbjct: 70  GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G  D +   L    D N +  D +G   LH+A + GH ++V+ L+ K GAD
Sbjct: 6   KRLIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSK-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            N  DSDG   L YA    H ++++ L++ GA
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94

>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa Length = 106

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 78  RFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 133
           +F++A + + SL K    K      L FY  +KQATVG  NI +P   +   K+K++AW 
Sbjct: 7   KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWK 66
Query: 134 SLGQMAKSEAMSKYIALLNEV 154
           S+   +K  A  KY+  L E+
Sbjct: 67  SVEGTSKEVAYQKYVEKLLEI 87

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  D  G+  LH A  RGHL++V+ L+ K GADVN +DS G   L  A    H +++E
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 289 YLVNSGA 295
            L+ +GA
Sbjct: 131 VLLKNGA 137

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           ++  A+ G L++ VK L +    ++N  D+NG   LH A   GHL+VV+ L+E  GADVN
Sbjct: 6   LHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVN 62
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             D +G   L  A    H ++++ L+ +GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G+ D +  ++      ++N  D++G   LH A  +GHL++V+ L+ K GAD
Sbjct: 16  KKLLEAARAGQDDEV--RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
           VN  D  GD  L  A    H +++E L+ +GA  + T
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G+ D +   +    D N N  D  G   LH A D  HL++V+ L+ K GAD
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAN--DRKGNTPLHLAADYDHLEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VN  D+DG   L  A    H +++E L+  GA
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A+ G L+++   L    D  +N  D+NG   LH A   GHL+VV+ L+E  GADVN  D 
Sbjct: 10  ARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK 66
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
           +G   L  A    H ++++ L+ +GA+
Sbjct: 67  NGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7 Complexed With Palmitoyl-Coa Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 79  FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 138
           F++A + +  L  + D   L + Y LYKQA VG  NI  P   +++ K+K+ AWN    +
Sbjct: 8   FDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGL 67
Query: 139 AKSEAMSKYIALLNEV 154
           +  +A S YI+   E+
Sbjct: 68  STEDATSAYISKAKEL 83

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 170 ESQESGSKENEGQTKGWVNVSSMI-----NDESQLDDNEKNIYEWAKEGKLDMLVKQLTK 224
           E Q   S  +     G V++  M+     N ++  +D    + E A+   L+  VK L K
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA-VKYLIK 65
Query: 225 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 284
                ++  D  G  CLH A  +GH +VVQ+L+     DVN  D  G   + +A   +H 
Sbjct: 66  AGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 285 DLIEYLVNSGA 295
           DL++ L++ G+
Sbjct: 125 DLVKLLLSKGS 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A  G+ D +  ++      ++N  D+NGL  LH A   G L++V+ L+ K 
Sbjct: 5   DLGKKLLEAAAAGQDDEV--RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KN 61
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN +DS G   L  A    H +++E L+  GA
Sbjct: 62  GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           +D    ++  A  G L+++   L    D N + L   G+  LH A   GHL++V+ L+ K
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL--TGITPLHLAAATGHLEIVEVLL-K 101
Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            GADVN  D+DG   L  A    H +++E L+  GA
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A+ G+ D +  ++      + N  D  G   LH A   GHL++V+ L+ + 
Sbjct: 1   DLGKKLLEAARAGQDDEV--RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL-RN 57
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D++G   L  A ++ H +++E L+  GA
Sbjct: 58  GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 180 EGQTKGWVNV--SSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG 237
           +G +KG   +  S+ + ++++  DN   ++E AK G L  L + L       +N LD+ G
Sbjct: 51  KGTSKGRTGLIPSNYVAEQAESIDNP--LHEAAKRGNLSWLRECLDN--RVGVNGLDKAG 106
Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS 297
              L+WAC  GH  +V+ L  +   ++N  +  GD  L  A    + D+++ L+  GA +
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++NQ D++G + LHWAC  G   VV+ LI + GA +NV +   D  L  A +  H D+++
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 289 YLV 291
            L+
Sbjct: 90  KLL 92

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G+ D +  ++      ++N  D +G   LH A   GHL++V+ L+ K GAD
Sbjct: 16  KKLLEAARAGRDDEV--RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VN  D  G   L  A    H +++E L+ +GA
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G  D  VK L +    ++N  D +G   LH A + GH +VV+ L+ + GAD
Sbjct: 6   KRLIEAAENGNKDR-VKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GAD 62
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            N  DSDG   L  A    H ++++ L++ GA
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++NQ D++G + LHWAC  G   VV+ LI + GA +NV +   D  L  A +  H D+++
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 289 YLV 291
            L+
Sbjct: 85  KLL 87

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           AK G L++ V+ L K    ++N  D  G   LH A D GHL++V+ L+ K GADVN  D 
Sbjct: 55  AKTGHLEI-VEVLLKYG-ADVNAWDNYGATPLHLAADNGHLEIVEVLL-KHGADVNAKDY 111
Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +G   L  A    H +++E L+  GA
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGA 137

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 213 GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 272
           G  + +++ L +  D N   +D  GL  LH AC   ++ +V+ L+E  GA++N  D++G 
Sbjct: 51  GDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGW 107
Query: 273 YGLDYAKAIEHTDLIEYLVNSGAH 296
             L  A +  + D+ EYL++ GAH
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAH 131

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A+ G+ D +  ++      ++N  D  G   LH A   GHL++V+ L+ K 
Sbjct: 13  DLGKKLLEAARAGRDDEV--RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-KN 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN  D+ G   L  A    H +++E L+ +GA
Sbjct: 70  GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I++ A+ G+LD L   L    D NI   D  G   LH A   GHL+VV+ L++   ++V 
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  GD   D A+     +++  +  +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D    ++  AK G  + + K L+K  D N    D N    LH A   GH ++V+ L+ K 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKLLLAK- 64
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN    DG+     AK   H ++++ L   GA
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
           EG+ D++ + + ++ D ++   ++ G+  LH A   GH ++V+ L++  G +VN  DSDG
Sbjct: 47  EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 272 DYGLDYAKAIEHTDLIEYLVNSGA 295
              L  A +  +  + ++LV SGA
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
           EG+ D++ + + ++ D ++   ++ G+  LH A   GH ++V+ L++  G +VN  DSDG
Sbjct: 47  EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 272 DYGLDYAKAIEHTDLIEYLVNSGA 295
              L  A +  +  + ++LV SGA
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I++ A+ G LD L   L    D NI   D  G   LH A   GHL+VV+ L++   ++V 
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  GD   D A+     +++  +  +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I   A  GKLD L +++   K     + D++    LHWAC  GH ++V+ L++  G  VN
Sbjct: 10  ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
             D  G   L  A +    ++++ L+  GAH
Sbjct: 68  DKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 263
           K + E A+ G+ D +  ++      ++N  D+ G   LH A   GH ++V+ L+ K GAD
Sbjct: 16  KKLLEAARAGQDDEV--RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGAD 72
Query: 264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VN  D+DG   L  A    H +++E L+  GA
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I   A  GKLD L +++   K     + D++    LHWAC  GH ++V+ L++  G  VN
Sbjct: 10  ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVN 67
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
             D  G   L  A +    ++++ L+  GAH
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  K + E A+ G+ D  V+ LT     ++N  D  G   LH A   GHL++V+ L+ K 
Sbjct: 13  DLGKKLLEAARAGQDDE-VRILTA-NGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KN 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADVN T + G   L  A   +H +++E L+  GA
Sbjct: 70  GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I++ A+ G LD L   L    D NI   D  G   LH A   GHL+VV+ L++   ++V 
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  GD   D A+     +++  +  +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I++ A+ G LD L   L    D NI   D  G   LH A   GHL+VV+ L++   ++V 
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  GD   D A+     +++  +  +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1 Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
           +M D+ +G  +GF FVTF + ++VDK+     H + G          HN +V+K +  +E
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 185
Query: 65  TASFS 69
            AS S
Sbjct: 186 MASAS 190

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I++ A+ G LD L   L    D NI   D  G   LH A   GHL+VV+ L++   ++V 
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  GD   D A+     +++  +  +GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi) G); A Human Telomeric Repeat Containing 6-Methyl-8-(2- Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi) Length = 195

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
           +M D+ +G  +GF FVTF + ++VDK+     H + G          HN +V+K +  +E
Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 184
Query: 65  TASFS 69
            AS S
Sbjct: 185 MASAS 189

>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1 (up1) Using Segmental Isotope Labeling Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
           +M D+ +G  +GF FVTF + ++VDK+     H + G          HN +V+K +  +E
Sbjct: 137 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 186
Query: 65  TASFS 69
            AS S
Sbjct: 187 MASAS 191

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV 264
           +I++ A +G+LD L + L K  D  +N+ DE G   L WA   G ++ V+ L+E  GAD 
Sbjct: 5   SIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADP 62
Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           ++   + +  L  A    +TD++  L+
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLL 89

>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex Length = 183

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
           +M D+ +G  +GF FVTF + ++VDK+     H + G          HN +V+K +  +E
Sbjct: 129 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----------HNCEVRKALSKQE 178
Query: 65  TASFS 69
            AS S
Sbjct: 179 MASAS 183

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV 264
           +I++ A +G+LD L + L K  D  +N+ DE G   L WA   G ++ V+ L+E  GAD 
Sbjct: 5   SIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADP 62
Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           ++   + +  L  A    +TD++  L+
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLL 89

>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In Daz-Associated Protein 1 Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
          ++  +M DK T  S+GFGFV F++   V  V ++  H L+G  +  +P      Q
Sbjct: 44 VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98

>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex With Rna Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 1   MNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
           ++A +M DK+TG S+GFGFVT+ + +AVD+V
Sbjct: 115 IDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           D  + + E A+ G+ D +  ++      ++N  D  G   LH A   GHL++V+ L+ K 
Sbjct: 13  DLGRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL-KH 69
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GADV+ +D  G   L  A    H +++E L+ +GA
Sbjct: 70  GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 195 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNC--LHWACDRGHLKV 252
           D  Q D     +  WA       LVK     K   ++QL  + LN   LHWA  +GHL +
Sbjct: 34  DVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGD-LNSTPLHWATRQGHLSM 91
Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 294
           V  L+ K GAD ++ D +G   +  A    HT ++ YL+  G
Sbjct: 92  VVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
           N  ++++ A +G++  L    T+++  N IN  DE G   L WA   G + VV+ L++  
Sbjct: 19  NSLSVHQLAAQGEMLYLA---TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN- 74
Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           GAD  +     +  L  A +  +TD+++ L++ G 
Sbjct: 75  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	4e-29
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	4e-28
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	4e-27
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	2e-26
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	5e-26
2lbb_A	96	Acyl COA binding protein; protein binding, structu	6e-26
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	7e-25
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	8e-24
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	1e-23
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	4e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-07
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	5e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	1e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	2e-12
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-07
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	4e-12
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	5e-12
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	2e-11
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-06
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	6e-12
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-08
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	5e-11
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	5e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-08
2etb_A	256	Transient receptor potential cation channel subfam	9e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
2pnn_A	273	Transient receptor potential cation channel subfa	9e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-09
2rfa_A	232	Transient receptor potential cation channel subfa	4e-07
2rfa_A	232	Transient receptor potential cation channel subfa	9e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	2e-08
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	3e-08
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	3e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	5e-08
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	5e-08
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	7e-08
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	5e-08
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	6e-08
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	7e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-05
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	1e-07
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	1e-07
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-05
1x4e_A	85	RNA binding motif, single-stranded interacting pro	2e-07
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	2e-07
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	1e-05
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	2e-07
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-06
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	3e-07
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	3e-07
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	1e-06
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	4e-07
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	5e-07
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	5e-07
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	5e-07
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	6e-07
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	7e-07
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	8e-07
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	9e-07
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	1e-06
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	1e-06
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	3e-06
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	2e-06
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	2e-06
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	2e-06
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	2e-06
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	2e-06
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	2e-06
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	2e-06
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	2e-06
2div_A	99	TRNA selenocysteine associated protein; structural	2e-06
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	2e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-06
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	3e-06
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	3e-06
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	3e-06
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	4e-06
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	4e-06
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	4e-06
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	5e-06
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	6e-06
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	6e-06
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	6e-06
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	8e-06
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	8e-06
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	9e-06
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	5e-04
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	9e-06
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	1e-05
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	1e-05
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	1e-05
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	1e-05
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	2e-05
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	2e-05
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	1e-04
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	8e-04
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	3e-05
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	3e-05
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	5e-05
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	3e-05
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	4e-05
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	4e-05
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	4e-05
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	4e-05
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	7e-05
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	7e-05
1x5o_A	114	RNA binding motif, single-stranded interacting pro	9e-05
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	9e-05
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	1e-04
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	1e-04
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	1e-04
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	1e-04
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	1e-04
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	2e-04
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	2e-04
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	2e-04
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	2e-04
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	2e-04
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-04
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	2e-04
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	3e-04
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	4e-04
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	8e-04
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	8e-04

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score =  106 bits (266), Expect = 4e-29
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)

Query: 65  TASFSRMA-ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNM 123
           ++  +R A    +  F  + + +  L K   +   LK YALYKQAT G CN+ KP  +++
Sbjct: 5   SSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDL 64

Query: 124 EAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESG 175
             K+K++AWN+LG + K  A   Y+ L++ +    E   Q E   D    SG
Sbjct: 65  INKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG 116

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score =  103 bits (259), Expect = 4e-28
 Identities = 38/107 (35%), Positives = 60/107 (56%)

Query: 69  SRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSK 128
           S  +  + + F +A  +L  L++      LL  YA YKQ  VG CN  KPS+++ E K K
Sbjct: 2   SSGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQK 61

Query: 129 YNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESG 175
           + AW +LG  + S+AM +YIA++ ++D GW  +  E+   + S  S 
Sbjct: 62  WEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEASGPSS 108

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89

 Score =  100 bits (250), Expect = 4e-27
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 74  NMEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           +M   F +   ++  L +   L +   L  Y  YKQ+T+G CNI +PS +    + KY A
Sbjct: 1   HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
           W S+  + + +A  +Y+ +++E+   W+D
Sbjct: 61  WKSVENLNREDAQKRYVDIVSEIFPYWQD 89

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87

 Score = 98.4 bits (245), Expect = 2e-26
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 76  EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
           +  F +A + +  L  K     +L  Y  YKQATVG  N ++P   +   K+K++AWN L
Sbjct: 3   QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62

Query: 136 GQMAKSEAMSKYIALLNEVDAGW 158
              +K +AM  YI  + E+   +
Sbjct: 63  KGTSKEDAMKAYINKVEELKKKY 85

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86

 Score = 97.7 bits (243), Expect = 5e-26
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 75  MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
           +   F +    +  L  K  +  LL+ YALYKQATVG  + +KP  +NM+ + K+ AW +
Sbjct: 1   VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWEN 60

Query: 135 LGQMAKSEAMSKYIALLNEVDAGW 158
           L   ++ +A  +YIAL++++ A +
Sbjct: 61  LKGKSQEDAEKEYIALVDQLIAKY 84

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96

 Score = 97.7 bits (243), Expect = 6e-26
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 76  EDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
            D F+ A  Y+ +       +   L FY  YKQATVG CN  KP    ++ K K+ AWN+
Sbjct: 11  ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNA 70

Query: 135 LGQMAKSEAMSKYIALLNEVDAGWED 160
           L  M+   A   Y+ LL+ +   W +
Sbjct: 71  LRGMSTESAKEAYVKLLDTLAPSWRN 96

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89

 Score = 94.5 bits (235), Expect = 7e-25
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 75  MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 134
           ++  F++A + +  L  + D   L + Y LYKQA VG  NI  P   +++ K+K+ AWN 
Sbjct: 4   LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNL 63

Query: 135 LGQMAKSEAMSKYIALLNEVDAGW 158
              ++  +A S YI+   E+   +
Sbjct: 64  KKGLSTEDATSAYISKAKELIEKY 87

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106

 Score = 92.3 bits (229), Expect = 8e-24
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 76  EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           + +F++A + + SL K    K      L FY  +KQATVG  NI +P   +   K+K++A
Sbjct: 5   KAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDA 64

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
           W S+   +K  A  KY+  L E+    + +E ++
Sbjct: 65  WKSVEGTSKEVAYQKYVEKLLEILKKADTEESKK 98

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119

 Score = 92.4 bits (229), Expect = 1e-23
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 76  EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           E RF  A   + SL K    +  +  +LKFY+ YKQAT G C + +P +++   + K++A
Sbjct: 25  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
           W+SLG M K EAM  Y+  + ++       E+ E
Sbjct: 85  WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106

 Score = 90.5 bits (224), Expect = 4e-23
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 67  SFSRMAENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYN 122
           S S   +  + +F  A   + +L K    +     +L+FY+ YKQAT+G C + +P +++
Sbjct: 1   SMSPEPD-CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWD 59

Query: 123 MEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEE 165
              + K++AWNSLG+M++ EAMS YI  +  V     D     
Sbjct: 60  PIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG 102

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 199 LDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
               E+           AK G L   +++        +N LD+ G   L+WAC  GH  +
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSW-LRECLD-NRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L  +   ++N  +  GD  L  A    + D+++ L+  GA
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +             G  D+ V+ L    +  +NQ ++ G   LH A  +G+  +VQ 
Sbjct: 100 NGLDKAGSTALYWACHGGHKDI-VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+ K GA  ++ + +     D A       L++    + A
Sbjct: 159 LLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           D                 +G+  ++           + +  E+  N LH A  RG+L  +
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLI-------PSNYVAEQAESIDNPLHEAAKRGNLSWL 89

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NSGA 295
           +  ++     VN  D  G   L +A    H D++E L      
Sbjct: 90  RECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N++N          A +G  D+ V+ L   K    +  +         A +     +++ 
Sbjct: 134 NQQNKLGDTALHAAAWKGYADI-VQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKK 191

Query: 256 LIEKCGADVNVTDSDGDYGLDYA 278
                 A   +++++     + +
Sbjct: 192 KQGT-DAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 1/62 (1%)

Query: 231 NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
            +  + G   +  A      +    L  +   D+       D       +   T LI   
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 291 VN 292
             
Sbjct: 65  YV 66

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.7 bits (185), Expect = 4e-17
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K+          A+ G L++ VK L +    ++N  D+NG   LH A   GHL+VV+ 
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
           L+E  GADVN  D +G   L  A    H ++++ L+ +GA+
Sbjct: 87  LLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.8 bits (162), Expect = 8e-14
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  D+NG   LH A   GHL+VV+ L+E  GADVN  D +G   L  A    H ++++
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVK 85

Query: 289 YLVNSGA 295
            L+ +GA
Sbjct: 86  LLLEAGA 92

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.5 bits (143), Expect = 4e-11
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           NG   LH A   GHL+VV+ L+E  GADVN  D +G   L  A    H ++++ L+ +GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  N  +       A  G  D+ V++L +    +IN ++E+G   LH+AC  G  +V + 
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDI-VQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+   GA V++ +  G+  +D AKA     L E     G 
Sbjct: 124 LVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           I+   +EG     V+      + ++NQ D++G + LHWAC  G   VV+ LI + GA +N
Sbjct: 9   IFTQCREGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARIN 66

Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V +   D  L  A +  H D+++ L+   A
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N+ + + +       +EG+  + V+ L   +   IN ++      LH A   GH  +VQ 
Sbjct: 33  NQGDDHGFSPLHWACREGRSAV-VEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++   AD+N  +  G+  L YA       + E LV +GA
Sbjct: 91  LLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
               ++ +   C  G+   V+  ++    D+N  D  G   L +A     + ++E L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 294 GA 295
           GA
Sbjct: 62  GA 63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 4e-16
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  N          A+EG + +    L K     ++     G   LH A   G++K+V+ 
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPV-ADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++   ADVN     G   L  A    HTD++  L+ +GA
Sbjct: 330 LLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.7 bits (182), Expect = 6e-15
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +      +      +  G + + VK L +    ++N   + G + LH A  +GH  +V  
Sbjct: 305 DATTRMGYTPLHVASHYGNIKL-VKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
           L++  GA  N   SDG   L  AK + +  + + L      +S  
Sbjct: 363 LLKN-GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +      +      AK+ ++++  + L +    + N     G+  LH A   GH ++V  
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEV-ARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+ K  A+ N+ +  G   L       H  + + L+  G 
Sbjct: 264 LLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N +++         A+EG  +M V  L   K  N N  +++GL  LH     GH+ V   
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEM-VALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           LI+  G  V+ T   G   L  A    +  L+++L+   A
Sbjct: 297 LIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
                  +      AK GK+ +  + L + +D + N   +NGL  LH A    +L +V+ 
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRV-AELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+ + G   +    +G   L  A      ++   L+  G 
Sbjct: 198 LLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  N+         A+ G  ++  K L +     +N   ++    LH A   GH  +V+ 
Sbjct: 41  NVSNVKVETPLHMAARAGHTEV-AKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+E   A+ N+  + G   L  A    H + +  L+   A
Sbjct: 99  LLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +     E+GL  LH A   GHL +V++L+++ GA  NV++   +  L  A    HT++ +
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 289 YLVNSGA 295
           YL+ + A
Sbjct: 65  YLLQNKA 71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 5e-13
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K   +       A+ G  +M VK L +  + N N     G   LH A   GH++ V  
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNM-VKLLLE-NNANPNLATTAGHTPLHIAAREGHVETVLA 131

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+EK  A        G   L  A       + E L+   A
Sbjct: 132 LLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 19/102 (18%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K    +      A++G  D+ V  L K    + N++  +G   L  A   G++ V   
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDI-VTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDV 395

Query: 256 LIEKC--GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L       + V V+D            +   + ++ +++   
Sbjct: 396 LKVVTDETSFVLVSDKHR---------MSFPETVDEILDVSE 428

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +             +  G  D+ V  L + +D +IN  D NG   L +A    H+K V+ 
Sbjct: 63  HILAKERESALSLASTGGYTDI-VGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+ + GAD+      G   +D A A+ +  + + + N   
Sbjct: 121 LLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 4e-15
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A +G+LD  +K+  +  D  +N+ DE G   L WA   G ++ V+ L+E  GAD ++   
Sbjct: 10  AAQGELDQ-LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAK 67

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + +  L  A    +TD++  L+    
Sbjct: 68  ERESALSLASTGGYTDIVGLLLERDV 93

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +           +   +   V+ L   +  ++    ++G   +  A   G+ KV Q 
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKC-VEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQV 153

Query: 256 LIEKCGADVNVTDSDG 271
           +       +  ++   
Sbjct: 154 IENH-ILKLFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 241 LHWACDRGHLKVVQHLIEKCGAD-VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +H    +G L  ++  + K G + VN  D  G   L +A A    + + +L+  GA
Sbjct: 6   IHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 193 INDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD 246
           ++ +     + +           A+   + + VK L   K  N ++ DE+G   +  A  
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPI-VKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            G ++VV +LI++ GA V   D+        A+A  H ++++       
Sbjct: 323 EGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +  E           +  + V  L K    +    +++  + LH A       ++ +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRL-VAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVY 217

Query: 256 LIEKC--GADVNVTDSDGDYGLDYAKAIEHTDLI---EYLVNSGA 295
           ++       D+   D +G   L      E  D +   + LV  GA
Sbjct: 218 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 200 DDNEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
              E              G   +  + +T+ +  NI     +    LHW       +  +
Sbjct: 86  IPTEPEPESPIKLHTEAAGSYAI-TEPITR-ESVNIID-PRHNRTVLHWIASNSSAEKSE 142

Query: 255 HLIEK-------CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            LI          GADVN  D D +  L  A       L+ YL+ +GA
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 202 NEKNIYEW------AKEGKLDML--VKQL-------TKLKDFNINQLDENGLNCLHWACD 246
            E +          A     D +   K L               +     G   LH+A  
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             ++ +V++L+ + G++ +  D DG   +  A      +++ YL+  GA
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N +D +    L  A      ++V +L++  GAD  + +      L  A A     ++ 
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMV 216

Query: 289 YLVNSGAHSSN 299
           Y++NS     +
Sbjct: 217 YMLNSTKLKGD 227

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 2/70 (2%)

Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
                N+L    L         G+  +               + +    L    A     
Sbjct: 50  IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTN-LQIPTEPEPESPIKLHTE-AAGSYA 107

Query: 286 LIEYLVNSGA 295
           + E +     
Sbjct: 108 ITEPITRESV 117

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 72.8 bits (180), Expect = 6e-16
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
                           +G  D+ VK L      ++N+ D NG   L +A    H+K V+ 
Sbjct: 63  QLLGKGRESALSLACSKGYTDI-VKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+E  GAD  +    G   +D A A+ +  + + + +   
Sbjct: 121 LLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A +G++   +    + ++  IN  DE G   L WA   G + VV+ L++  GAD  +   
Sbjct: 11  AAQGEMLY-LATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGK 67

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  L  A +  +TD+++ L++ G 
Sbjct: 68  GRESALSLACSKGYTDIVKMLLDCGV 93

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +H    +G +  +   IE+    +N TD +G   L +A A     ++E+L+ +GA
Sbjct: 7   VHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.5 bits (174), Expect = 2e-15
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
            K G LD  VK     K  ++N+  E G   LH+A D G L++++ L+ K GAD+N  D 
Sbjct: 15  LKNGDLDE-VKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDK 71

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
                L  A    H   ++ L++ GA
Sbjct: 72  HHITPLLSAVYEGHVSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.5 bits (161), Expect = 1e-13
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N             A  G+L++ ++ L   K  +IN  D++ +  L  A   GH+  V+ 
Sbjct: 34  NRTLEGGRKPLHYAADCGQLEI-LEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKL 91

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           L+ K GAD  V   DG    +         L++
Sbjct: 92  LLSK-GADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 233 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
           L         WA   G L  V+  + K G DVN T   G   L YA      +++E+L+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 293 SGA 295
            GA
Sbjct: 62  KGA 64

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.3 bits (171), Expect = 2e-15
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A+ G L++ VK L +    ++N  D+NG   LH A   GHL+VV+ L+E  GADVN  D 
Sbjct: 10  ARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDK 66

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
           +G   L  A    H ++++ L+ +GA+
Sbjct: 67  NGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.2 bits (150), Expect = 2e-12
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           NG   LH A   GHL+VV+ L+E  GADVN  D +G   L  A    H ++++ L+ +GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 1e-07
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K+          A+ G L++ VK L +    ++N  D+NG   LH A   GHL+VV+ 
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEV-VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 256 LIEKCGA 262
           L+E  GA
Sbjct: 87  LLEA-GA 92

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHLKV 252
           N  +                   V+ +T L      ++N   E G   L  A ++ HL +
Sbjct: 176 NACDNMGRNALIHALLSSDDSD-VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VQ L+E+   ++N TDSDG   L  A  ++   + E L   GA
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +     +NG      A   G +K+++  + K GADVN  D  G      A        ++
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 289 YLVNSGA 295
           +L   GA
Sbjct: 123 FLYKRGA 129

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC----------LHWAC 245
           NE + Y +      A  GK+   +K L K +  N+N   +   +           L  A 
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKA-LKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD----LIEYLVNSGA 295
           ++GH++V++ L+++ GADVN  D+ G   L +A           +   L++ GA
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
            +   +D+ V+QL +    N+N  + E G   LH A       +V+ L+   GAD  +  
Sbjct: 13  VQNEDVDL-VQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRK 69

Query: 269 SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            +G      A       L++  ++ GA
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGA 96

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEHTDLIEYLVN 292
                + L  A     + +VQ L+E  GA+VN  + +G +  L  A  +   D++E L+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 293 SGA 295
            GA
Sbjct: 61  HGA 63

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 3e-15
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N +N            +G+ ++ +  + K    ++N+ +  G N L  A ++GH+  V+ 
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEI-LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIE-----HTDLIEYLVNSGA 295
           L+E    D++  +  G   L  A  +      + D+++ L+ +GA
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
                 + E A +     + + L     + ++++D  G   L+ A     +++ + LI++
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            GAD+N+ +S  D    YA A   T+++ Y++    
Sbjct: 62  -GADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC-----DRG 248
           D N+ N Y        A++G +D  VK L +    +I+  ++ G   L  A      ++ 
Sbjct: 98  DLNKHNRYGGNALIPAAEKGHIDN-VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156

Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           +  +V+ L+E  GAD ++ D+ G   +DYA    +T++ + L 
Sbjct: 157 YQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +E +               +++  K L   +  +IN  +    +   +A  +G  +++ +
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEI-AKALID-RGADINLQNSISDSPYLYAGAQGRTEILAY 90

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +++    D+N  +  G   L  A    H D ++ L+  G 
Sbjct: 91  MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKL---KDFNINQLDENGLNCLHWACDRGHL 250
           D + +N + +          + + L + + KL      + +  D +G   + +A  +G+ 
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 251 KVVQHLIE 258
           ++ + L +
Sbjct: 192 EISKILAQ 199

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.8 bits (172), Expect = 4e-15
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNC-LHWACDRGHLKVVQH 255
           N  N +          G   +  + L        N  D   L   +H A   G L  +  
Sbjct: 39  NALNRFGRRPIQVMMMGSAQV-AELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L    GA ++V D+ G   +D A+   H D+  YL  +  
Sbjct: 97  LHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.7 bits (164), Expect = 6e-14
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
            I+ L  +    L  A  RG ++ V+ L+E  GAD N  +  G   +     +    + E
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVM-MMGSAQVAE 61

Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 62  LLLLHGA 68

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 200 DDNEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
           + N  +           A+EG LD  +  L +     ++  D  G   +  A ++GH  +
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDT-LVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 253 VQHLIEKCGAD 263
            ++L      D
Sbjct: 127 ARYLHAA-TGD 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.8 bits (172), Expect = 5e-15
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K+   W         G L + V+ L +     +N       + LH A   GH+ +V+ 
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKV-VELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
           L+   GA  N  +  G   +DY        L+     + + S++
Sbjct: 95  LLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           + N  D  G   LH AC+ GHLKVV+ L++   A VN T    D  L  A    H D+++
Sbjct: 35  DPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVK 93

Query: 289 YLVNSGA 295
            L++ GA
Sbjct: 94  LLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.6 bits (156), Expect = 9e-13
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +    +  G   LH A  +G +  V++L++  G+D NV D  G   L  A    H  ++E
Sbjct: 3   DPFT-NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 289 YLVNSGA 295
            L+   A
Sbjct: 61  LLLQHKA 67

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.9 bits (177), Expect = 5e-15
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 200 DDNEKNIYEW---------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250
              +               A  G+L++ V+Q  K +  + +Q +E G+  LH A    + 
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEV-VQQAVK-EMNDPSQPNEEGITALHNAICGANY 67

Query: 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            +V  LI   GA+VN  DS G   L  A +   T +   LV  GA
Sbjct: 68  SIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           ++ N                 + V  L      N+N  D +G   LH A       +   
Sbjct: 48  SQPNEEGITALHNAICGANYSI-VDFLIT-AGANVNSPDSHGWTPLHCAASCNDTVICMA 105

Query: 256 LIEKCGADVNVTD-SDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
           L++  GA +  T  SDG    +        + D   YL +   
Sbjct: 106 LVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 1e-14
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           D N ++   W       +   +D+ VK L   K  +IN  D     CLHWA   G + + 
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDL-VKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIA 160

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + L+     D++  +  GD  L  A      D +   ++  +
Sbjct: 161 EILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N ++  E       A  G +D+  + L      +++ ++ +G + LH A        V  
Sbjct: 138 NIRDNEENICLHWAAFSGCVDI-AEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVL 195

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            + +  +DV + + +G+  L  A           +  +  
Sbjct: 196 FLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +  +  +       A+   L+  VK L K     ++  D  G  CLH A  +GH +VVQ+
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEA-VKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+     DVN  D  G   + +A   +H DL++ L++ G+
Sbjct: 96  LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N     +N  + LH A + GH+ +   L++  GA+++    D    L  A    H + ++
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 289 YLVNSGA 295
           YL+ +GA
Sbjct: 62  YLIKAGA 68

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +  NI+        A+E + D  V      +D ++   ++ G   L  A     +     
Sbjct: 171 HAVNIHGDSPLHIAARENRYDC-VVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 256 LIEKCGAD 263
           + +    D
Sbjct: 229 MSKA-LQD 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 202 NEKNIYEW------AKEGKLDM---LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 252
             K+  +        +    +    ++  +       ++  ++ G + LHWA       V
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
               +E  G DVN+ D++    L  +       L + L+    
Sbjct: 227 AMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 221 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 280
            +T     N  + D+  +  +H A  +G    V+ LIE  G    + +  G   L  A  
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACK 62

Query: 281 IEHTDLIEYLVNSGA 295
               D  +YL + G 
Sbjct: 63  FGCVDTAKYLASVGE 77

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 20/112 (17%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQL-----------TKLKD-FNINQLDENGLNCLHW 243
           N ++           +   + +  K+L               +   +       L+ +  
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLL-TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           A D    +V+Q L EK   +V  + + G  G    K      +    +   A
Sbjct: 297 AADPSKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 195 DESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
           D  +L+  + +          A++G+ D  V++L +    +    +  G   LH AC  G
Sbjct: 7   DFPKLNRIKSDDENMEKIHVAARKGQTDE-VRRLIE-TGVSPTIQNRFGCTALHLACKFG 64

Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
            +   ++L    G   +     G   +  A     TDL+  LV         
Sbjct: 65  CVDTAKYLASV-GEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 14/110 (12%)

Query: 198 QLDDNEKNIYEW------AKEGK--LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH 249
           ++  + K+             G   L+M +K L +    +    D+     L  A +  +
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEM-IKILVQ-LGASPTAKDKADETPLMRAMEFRN 185

Query: 250 LKVVQHLIEKC----GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            + +  +++         ++  +  G+  L +A  I   D+    V  G 
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 9/102 (8%)

Query: 184 KGWVNVSSMINDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENG 237
           K  V +       +        +         A   K ++ ++ L + K   + +    G
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV-LQLLQE-KLDEVVRSLNTG 323

Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 279
                    +    V +  +    A V             +K
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 32/122 (26%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
             +N +         K G +D   K L        +    +G   +H A       +V  
Sbjct: 47  TIQNRFGCTALHLACKFGCVDT-AKYLAS-VGEVHS--LWHGQKPIHLAVMANKTDLVVA 102

Query: 256 LIEKC--------------------GADVNVTDSDGDYGLDYA--KAIEHTDLIEYLVNS 293
           L+E                          +V    G   L +      E+ ++I+ LV  
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162

Query: 294 GA 295
           GA
Sbjct: 163 GA 164

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + K+   +      A+ G LD  ++ L +    ++N  D  G   LH A   GHL+VV+ 
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDT-LQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++   ++V   +  GD   D A+     +++  +  +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
           N +N +        K G  ++  ++L   +  N +  D  G   +H A   G L  +Q L
Sbjct: 32  NAQNGFGRTALQVMKLGNPEI-ARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +E   ADVN+ D++G+  L  A    H  ++E+LV   A
Sbjct: 90  LEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.5 bits (143), Expect = 7e-11
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 233 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
           + E   N L  A  RG L+ +  L++    +VN  +  G   L     + + ++   L+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVM-KLGNPEIARRLLL 58

Query: 293 SGA 295
            GA
Sbjct: 59  RGA 61

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 8e-10
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N+N  +  G   L      G+ ++ + L+ + GA+ ++ D  G   +  A      D ++
Sbjct: 30  NVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQ 87

Query: 289 YLVNSGA 295
            L+   A
Sbjct: 88  TLLEFQA 94

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N+N    +G + LH A  RG L +V+ L+   GAD ++ +   D  L  A++    D++ 
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 233

Query: 289 YLVNSGA 295
                 A
Sbjct: 234 GKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKV 252
              +            +G L   V +L  L       ++  +      LH A       V
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPA-VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L+   GA     D  G      A        +  L++S A
Sbjct: 62  VRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTK---LKDFNINQLDENGLNCLHWACDRGHLKV 252
              + +         +       ++ L         ++   + +GL  LH A +    + 
Sbjct: 73  MALDRHGQTAAHLACEHRSPTC-LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 253 VQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           VQ L+E+ GAD++  D   G   L +A       +++ L+  GA
Sbjct: 132 VQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.6 bits (156), Expect = 5e-12
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 196 ESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRG 248
              LD   +N                +  V+ L + +  +I+ +D ++G + L  A +  
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQET-VQLLLE-RGADIDAVDIKSGRSPLIHAVENN 161

Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            L +VQ L++  GA+VN     G   L  A       L+  LV SGA
Sbjct: 162 SLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.9 bits (149), Expect = 4e-11
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +  N                 + V+ L      +   LD +G    H AC+      ++ 
Sbjct: 40  DIYNNLRQTPLHLAVITTLPSV-VRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 256 LIEKCGA----DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++   A    D+   + DG   L  A   E  + ++ L+  GA
Sbjct: 98  LLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIE---KCGADVNVTDSDGDYGLDYAKAIEHTDL 286
             + DE+G   LH A  +G+L  V  L+    + G ++++ ++     L  A       +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 287 IEYLVNSGA 295
           +  LV +GA
Sbjct: 62  VRLLVTAGA 70

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.9 bits (167), Expect = 4e-14
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNC-LHWACDRGHLKVVQH 255
           N  N Y          G   +  + L        N  D   L   +H A   G L  +  
Sbjct: 39  NAPNSYGRRPIQVMMMGSARV-AELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L    GA ++V D+ G   +D A+ + H D+  YL  +  
Sbjct: 97  LHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
            E   + L  A  RG ++ V+ L+E  GA+ N  +S G   +     +    + E L+  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVM-MMGSARVAELLLLH 66

Query: 294 GA 295
           GA
Sbjct: 67  GA 68

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A  G+++  V+ L +    N N  +  G   +      G  +V + L+   GA+ N  D 
Sbjct: 20  AARGRVEE-VRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADP 75

Query: 270 DGDYG-LDYAKAIEHTDLIEYLVNSGA 295
                 +  A      D +  L  +GA
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGA 102

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
           N  +           A+EG LD  +  L +     ++  D  G   +  A + GH  V +
Sbjct: 71  NCADPATLTRPVHDAAREGFLDT-LVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVAR 128

Query: 255 HLIEKCGADVNVTDSDG 271
           +L          ++   
Sbjct: 129 YLRAA-AGGTRGSNHAR 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 7e-14
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
             K+ +        A  G L + ++ L  L    +N  D+ G   L  A   GH      
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKL-IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
           L+EK GA+ ++ D+ G    D A    +  + ++ +N
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           D N+              +   ++  + L +    ++   D+     LH A   G LK++
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFEV-SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NSGA 295
           + L     + VN  D  G   L +A A  H D    LV   GA
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNIN---QLDENGLNCLHWACDRGHLKV 252
            +K+                ++    L   K  N+N     D++G    H AC  G+L+V
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEI-TSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

Query: 253 VQHLIEK-CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L ++    D+N   + G   L  A   +  ++ ++L+ +GA
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
             E +   + + L   K   + Q D++G   LHW+      ++   L+ K   +VN+ D 
Sbjct: 10  CMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDY 67

Query: 270 DGDYG---LDYAKAIEHTDLIEYLVNSGA 295
             D G      A ++ + ++++ L +   
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           LH AC       VQ L+    + +   D DG   L ++ + +  ++  +L++   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 8e-14
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           + EG+ D+ V+++   +  + +  ++ G+  LH A   GH ++V+ L++  G +VN  DS
Sbjct: 45  SLEGEFDL-VQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADS 101

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           DG   L  A +  +  + ++LV SGA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +  N             G  ++ VK L +    N+N  D +G   LH A    +++V + 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEI-VKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 256 LIEKCGADVN-VTDSDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
           L+E  GA V  +T SD     D  + +E  +T   ++L     
Sbjct: 122 LVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
            +         +        +   +   L  L  +   G   +VQ +I +   D ++ + 
Sbjct: 13  KRTNLRKT-GSERIA-HGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPND 68

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +G   L  A    HT+++++LV  G 
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGV 94

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 12/94 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC---LHWACDRGHLKV 252
           N  +   W      A    + +  K L +     +  +  + +          + G+ + 
Sbjct: 97  NAADSDGWTPLHCAASCNNVQV-CKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
            Q L       + + +    Y L   +     +L
Sbjct: 155 SQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 2/62 (3%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
           +  G   L         K     I   G  V          L  +      DL++ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYE 59

Query: 294 GA 295
             
Sbjct: 60  VD 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.5 bits (161), Expect = 1e-13
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N   ++G   LH A   GH ++V+ L+ K GADVN    DG+     AK   H ++++
Sbjct: 34  DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVK 92

Query: 289 YLVNSGA 295
            L   GA
Sbjct: 93  LLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
                 ++G   LH A   GH + V+ L+ K GADVN    DG+  L  A    H ++++
Sbjct: 3   MWG--SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 60  LLLAKGA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N ++          AK G  ++ VK L   K  ++N   ++G    H A   GH ++V+ 
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEI-VKLLLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKL 93

Query: 256 LIEKCGADVNVTDSDGDYGLDY 277
           L  K GADVN       +   +
Sbjct: 94  LDAK-GADVNARSWGSSHHHHH 114

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++  +D+     +  A   G  +  + L+E  G DV   D +    L +A      DL++
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 289 YLVNSGA 295
           Y ++ GA
Sbjct: 60  YYISKGA 66

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.3 bits (163), Expect = 6e-13
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
              + Y         + G  +   ++L +   +++ Q D+  +  LHWA     + +V++
Sbjct: 3   THIDDYSTWDIVKATQYGIYER-CRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 256 LIEKCGADVNVTDSD-GDYGLDYAKAIEHTDLIEYLVNSGA 295
            I K GA V+    D     L +A    H  ++  L+  GA
Sbjct: 61  YISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 229 NINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
           ++N  D+ +    LHWA   G+  V+  L+E  GA+V+  +  G+  LD AK  ++  +I
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMI 226

Query: 288 EYLVNSGA 295
            +L  +  
Sbjct: 227 NHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 5e-12
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
            ++G L M V QL K    + + +D  G +C+H A   GH  +V +LI K G DV++ D 
Sbjct: 84  TRQGHLSM-VVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQ 140

Query: 270 DGDYGLDYAKAIEHT-DLIEYLVNSGA 295
           +G   L +A    H+ D    L+    
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNV 167

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQ 254
           +  +          A+ G   + V  L   K  +++ +D+NG+  L WA  R H +   +
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSI-VAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

Query: 255 HLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            L+      VN+ D    +  L +A    +T +I  L+ +GA
Sbjct: 161 LLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
           N++  +  G + L  A  R ++ ++ HL E         +
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEA-RQAKGYDN 240

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.2 bits (163), Expect = 2e-13
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +          A  G L++ V+ L K    ++N  D  G   LH A   GHL++V+ 
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEI-VEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           L++  GADVN  D  G    D +    + DL E L 
Sbjct: 132 LLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N ++   W      A  G L++ V+ L K    ++N +D  G+  L  A   GHL++V+ 
Sbjct: 41  NAEDASGWTPLHLAAFNGHLEI-VEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++  GADVN  D +G   L  A    H +++E L+ +GA
Sbjct: 99  LLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.7 bits (159), Expect = 6e-13
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A+ G+ D  V+ L      ++N  D +G   LH A   GHL++V+ L++  GADVN  D 
Sbjct: 22  ARAGRDDE-VRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDH 78

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
            G   L  A    H +++E L+ +GA
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGA 104

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 5e-10
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
             + +    +    L  A   G    V+ L+   GADVN  D+ G   L  A    H ++
Sbjct: 5   HHHHHH-GSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 287 IEYLVNSGA 295
           +E L+ +GA
Sbjct: 63  VEVLLKNGA 71

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.7 bits (102), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  ++         A  G L++ V+ L K    ++N  D+ G      + D G+  + + 
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEI-VEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 256 LIEK 259
           L + 
Sbjct: 165 LQKL 168

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +          A    +D     L K    N +  +      L  A   G  +  + 
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDA-AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 208

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
           L++   A+ ++TD       D A+   H D++  L     H  +
Sbjct: 209 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           D + +           A+     M ++ L      ++N +D+ G + LHWA    ++   
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGM-LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             L++  GA+ ++ ++  +  L  A      +  + L++  A
Sbjct: 174 VVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 201 DNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
            N+ +          A+  + D   K+L +    + N  D  G   LH A       V Q
Sbjct: 50  HNQTDRTGETALHLAARYSRSDA-AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQ 107

Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            LI     D++    DG   L  A  +    ++E L+NS A
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 15/81 (18%)

Query: 229 NINQLDENGLNCLHWACDRG-------------HLKVVQHLIEKCGADV-NVTDSDGDYG 274
           ++N    +G   L  A   G                V+   I + GA + N TD  G+  
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETA 60

Query: 275 LDYAKAIEHTDLIEYLVNSGA 295
           L  A     +D  + L+ + A
Sbjct: 61  LHLAARYSRSDAAKRLLEASA 81

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + K+             G  ++  + L K     +N  D      LH A  +G  ++ + 
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEV-AELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++  GAD    + DG+  LD       TD+ + L    A
Sbjct: 127 LLQH-GADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.1 bits (160), Expect = 4e-13
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           AK G ++  VK+L  ++  N   ++      LH+A     + VV++L++  GADV+  D 
Sbjct: 16  AKAGDVET-VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDK 73

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
            G   L  A +  H ++ E LV  GA
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGA 99

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.7 bits (159), Expect = 5e-13
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           +  +    +       A   ++ + V+ L +    +++  D+ GL  LH AC  GH +V 
Sbjct: 34  NCRDIEGRQSTPLHFAAGYNRVSV-VEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVA 91

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + L++  GA VNV D      L  A A    ++ + L+  GA
Sbjct: 92  ELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.9 bits (131), Expect = 4e-09
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
           +      L  A   G ++ V+ L      +    +      L +A       ++EYL+  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 294 GA 295
           GA
Sbjct: 65  GA 66

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.7 bits (159), Expect = 4e-13
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + +   +       A EG  ++ V+ L K    ++N  D   +  LHWA +  H +VV+ 
Sbjct: 61  DARTKVDRTPLHMAASEGHANI-VEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
           LI+  GADV+          D +    + DL E L
Sbjct: 119 LIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           + +   +     LH A   GH  +V+ L++  GADVN  D      L +A    H +++E
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 118 LLIKYGA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
                D  G + LH A   GH    + L+   G   +         L  A +  H +++E
Sbjct: 27  PFTT-DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVE 84

Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 85  VLLKHGA 91

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +    L  A   G    V+ L+   GA    TD  G   L  A    H    E L+ +G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75

 Score = 62.5 bits (153), Expect = 5e-13
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          A +MFDK T   +GFGFVTF++++ V+KV     H +  
Sbjct: 29 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 5e-13
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
           +  N +          G   +   +L K +  + N  D +G + +H A   G L  ++ L
Sbjct: 30  DALNRFGKTALQVMMFGSTAI-ALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +E  GADVNV D  G   +  A    HT ++ +L  + +
Sbjct: 88  VEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A  G +   V++L   +  + + L+  G   L      G   +   L+++ GA  NV D+
Sbjct: 10  AARGDVQE-VRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDT 66

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
            G   +  A      D ++ LV  GA
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N ++          A+ G LD  +K L +    ++N  D  G   +H A   GH  VV  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDT-LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
           L     +D++  D+ G   L+ A      DL++ L  
Sbjct: 120 LAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L  A  RG ++ V+ L+ +     +  +  G   L        T +   L+  GA
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGA 59

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.9 bits (162), Expect = 6e-13
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +          A    +D     L K    N +  +      L  A   G  +  + 
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDA-AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++   A+ ++TD       D A+   H D++  L     
Sbjct: 177 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 4e-12
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           D + +           A+     M ++ L      ++N +D+ G + LHWA    ++   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGM-LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAA 141

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
             L++  GA+ ++ ++  +  L  A      +  + L++  A+
Sbjct: 142 VVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.4 bits (153), Expect = 9e-12
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 201 DNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
            N+ +          A+  + D   K+L +    + N  D  G   LH A       V Q
Sbjct: 18  HNQTDRTGETALHLAARYSRSDA-AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            LI     D++    DG   L  A  +    ++E L+NS A
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + +N  E       A+EG  +   K L      N +  D         A +R H  +V+ 
Sbjct: 152 DMQNNREETPLFLAAREGSYET-AKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 256 LIEKCGADVN 265
           L E      +
Sbjct: 210 LDEY-NLVRS 218

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A++      + QL  L+D +++ +DENG   L +    G  K V+ L E  GAD++  D 
Sbjct: 52  ARKADEQA-LSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDM 107

Query: 270 -DGDYGLDYAKAIEHTDLIEYLVNSGA 295
             G   L  A      +++E LV  GA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGA 134

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKV 252
           D +  +          A  G     V+ L +    +++  D   GL  LH A      +V
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKC-VRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L+E  GAD+ V D  G   L+ A+ I  T      +  G 
Sbjct: 126 VEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 234 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 293
                     A  +   + +  L+E    DV+  D +G   L +   +     +  L  +
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98

Query: 294 GA 295
           GA
Sbjct: 99  GA 100

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
           +I   DE GL  L  A +        + ++  G  + +  
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQF-GRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 5/72 (6%)

Query: 224 KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 283
           ++     ++    G          GH            ADV    S+ +     A     
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVV---SEYETPWWTAARKAD 56

Query: 284 TDLIEYLVNSGA 295
              +  L+    
Sbjct: 57  EQALSQLL-EDR 67

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 43
            +  D  T   +GF F+TF+ +E V K+     H +  S+
Sbjct: 29 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.9 bits (157), Expect = 2e-12
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K+             G  +M    L +    N+N  +  G   L  A   G  ++V+ 
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEM-SYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 291
           L+E  GAD++  D  G      A+     ++I+   
Sbjct: 153 LLEL-GADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
            +K+I          K  +L +  ++L   K  N+N  D +G   L W+   G+ ++   
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGI-AEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+E  GA+VN  + +G+  L  A     +++++ L+  GA
Sbjct: 120 LLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.4 bits (153), Expect = 6e-12
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
           DF  N  D      L  AC  G    +  L+E     +   D +G   L +A       +
Sbjct: 25  DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGI 83

Query: 287 IEYLVNSGA 295
            E L++ G+
Sbjct: 84  AEKLLSKGS 92

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N++N+         +K G+ ++ VK+L +    +I+  D  GL     A   G  +V++ 
Sbjct: 128 NDRNLEGETPLIVASKYGRSEI-VKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKI 185

Query: 256 LIE 258
             E
Sbjct: 186 FTE 188

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
              VM D  T  S+GFGFVTF ++  VDKV +   H L+ 
Sbjct: 28 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
              +++D      +GFGF+TF+++++VD+  +   H + G
Sbjct: 38 TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTK-----LKDFNINQLDENGLNCLHWACDRGHL 250
             ++           ++G L   V  LT+          +   + NG  CLH A   G+L
Sbjct: 72  ELRDFRGNTPLHLACEQGCLAS-VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 251 KVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            +V+ L+   GADVN  +  +G   L  A  +++ DL+  L+  GA
Sbjct: 131 GIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 194 NDESQLDDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACD 246
                      N          +  G L + V+ L      ++N  +  NG   LH A D
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGI-VELLVS-LGADVNAQEPCNGRTALHLAVD 160

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             +  +V  L++  GADVN     G            T + + L     
Sbjct: 161 LQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N +N  +           + ++  + L      +    D  G   LH AC++G L  V  
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEI-AEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGV 96

Query: 256 LIEKC-----GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L + C      + +  T+ +G   L  A    +  ++E LV+ GA
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
            +N  +      LH A      ++ + L+   G D  + D  G+  L  A        + 
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVG 95

Query: 289 YLVNSGA 295
            L  S  
Sbjct: 96  VLTQSCT 102

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N++   G +       R   ++ Q L +    +      + +    Y    E T+  E
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 232 QLDENGLNCLHWACDRGH----LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
           QL E+G + LH A         ++V++ +     A +N  ++     L  A      ++ 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 288 EYLVNSGA 295
           E L+ +G 
Sbjct: 62  EALLGAGC 69

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 202 NEKNIYEW-----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 256
             K             G  +  V +L + +  +IN  + +GL  LH AC   ++ +V+ L
Sbjct: 35  KVKFDDGAVFLAACSSGDTEE-VLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 257 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +E  GA++N  D++G   L  A +  + D+ EYL++ GA
Sbjct: 93  VEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 3e-11
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
           +D              A +G  ++ +K L +   +++N  D +G   LH A   G  +  
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEV-LKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + L+E    D+   +  G    D A       L E       
Sbjct: 249 RILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           D       E  +    D   +Q       N  +  ++G   LH A  +G+ +V++ LI+ 
Sbjct: 165 DIEAARKEEE-RIMLRD--ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
              DVN+ D DG   L  A      +    LV +  
Sbjct: 222 -RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N+ +   W      A  G LD+  + L   +  ++  ++  G   L  A +    +++Q+
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDI-AEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            + + G D+     + +  +         D  ++L +   
Sbjct: 158 EVNRQGVDIEAARKEEERIM-------LRDARQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 289
           +   D             G    ++  + K      V   DG      A +   T+ +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVK-RKKTKVKFDDG-AVFLAACSSGDTEEVLR 58

Query: 290 LVNSGA 295
           L+  GA
Sbjct: 59  LLERGA 64

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
            VM D  T  S+GFGFVTF ++  VDKV +   H L+ 
Sbjct: 55 CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 93

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N+N+ +++ +  LH A +R H  V++ L +  GA +N  DS G   L  A    H     
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCR 297

Query: 289 YLVNSGA 295
            L++ G+
Sbjct: 298 LLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           +  +  +       A   ++ + V+ L +    +++  D+ GL  LH AC  GH +V + 
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRI-VQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++  GA VN  D      L  A +    ++   L++ GA
Sbjct: 110 LLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           NEKN          A+    D+ ++ L K     +N LD  G   LH A   GHL+  + 
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDV-MEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRL 298

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L+   G+D ++    G             + ++ +++   
Sbjct: 299 LLSY-GSDPSIISLQGFTAAQMG-----NEAVQQILSEST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQ 254
             +    ++ + A+E  L  + K L    +    +  ++    LH A    H    +V +
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            L+ K GA+VN  + D    L  A    H D++E L   GA
Sbjct: 232 LLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 229 NINQLDENGLNCLHWACDRGHLK-VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
                 E   + L  A   G+ + ++  L      + + +D      L  A       ++
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIV 74

Query: 288 EYLVNSGA 295
           + L+  GA
Sbjct: 75  QLLLQHGA 82

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 31/123 (25%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +++++      A + ++++    L      +   ++ +G + +  A      + + +
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEV-CSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTY 175

Query: 256 LIEK--------------------CGADVNVTDSDGDYGLDYAKAIEH---TDLIEYLVN 292
             +                                 +  L  A A  H     + E L+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 293 SGA 295
            GA
Sbjct: 236 KGA 238

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
          A V+ D+ TG S+G+GFVT  ++ A ++     + +++G
Sbjct: 47 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 7/73 (9%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 229 NINQLDENGLNCLHWACDRGHL------KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
           +I  L +     +        +       + + +  + G  + + D  G   L++ K  +
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 283 HTDLIEYLVNSGA 295
               ++ + +   
Sbjct: 166 KPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEK 259
              + +   A  G  +  ++   K  +            + L    D    K+   LI K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 260 CGADVNVTDSDGDYGLDYA------KAIEHTDLIEYLVNSGA 295
            GAD+     +G                  T+L +  +  GA
Sbjct: 65  -GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 7/68 (10%)

Query: 229 NINQLDENGLNCLHWACDRGHLKV------VQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
           +I    + G          G   +       +  +EK GAD+          +       
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNY 125

Query: 283 HTDLIEYL 290
             D  E +
Sbjct: 126 FVDENEMI 133

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 12/80 (15%)

Query: 202 NEKNIYEW------AKEGKLDM-----LVKQLTKLKDFNINQLDENGLNCLHWACDRGHL 250
                              +D      L K +       +   D+ GL  L +       
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 251 KVVQHLIEKCGADVNVTDSD 270
             ++ + +      N+ ++ 
Sbjct: 168 IALKMMEDY-IKKYNLKENS 186

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A  G     ++ L   + + +N +  + ++ LH AC  GHL  V+ L++  GA VN   +
Sbjct: 67  AIHGHQLS-LRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTA 123

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
           D    L  A      D +  L+  GA
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGA 149

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N                G L   VK L K     +N +  +    L  AC  G    V  
Sbjct: 86  NIITADHVSPLHEACLGGHLSC-VKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNL 143

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++  GA V   +SD    +  A    H + +  L+  G 
Sbjct: 144 LLQH-GASVQ-PESDLASPIHEAARRGHVECVNSLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A+ G ++  V  L      NI+    +    L+ AC+      V+ L+E  GADVN    
Sbjct: 165 ARRGHVEC-VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGK 220

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGA 295
             D  L         +L   L++ GA
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + K  +         +  +    VK+L +    ++NQ  +   + LH        ++   
Sbjct: 184 DHKISHLGTPLYLACENQQRAC-VKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACL 240

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L++  GAD    +++G   ++            +L   GA
Sbjct: 241 LMDF-GADTQAKNAEGKRPVELVPPESPLA-QLFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           D  +  +      G  D              +    +  + +H A   GH   +++LI +
Sbjct: 25  DGKQGGMDGSKPAGPRD-FPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
            G  VN+  +D    L  A    H   ++ L+  GA 
Sbjct: 82  -GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 2/39 (5%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 267
           +    +  G   +        L  +   +E+ GA +   
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL--FLEREGASLPKP 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
                H      L+ + G+ +   D     G+D +K     D     + S     + 
Sbjct: 2   GSSHHHHHHSSGLVPR-GSHMASMDGKQG-GMDGSKPAGPRDFPGIRLLSNPLMGDA 56

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 44
           +  VM D  +  S+GFGFVTF +   VD   +   H ++G  +
Sbjct: 55 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV 98

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 3   ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET 62
             VM D NT  S+GFGFVT+   E VD   +   H ++G  +  + + S     +     
Sbjct: 43  CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 102

Query: 63  K 63
            
Sbjct: 103 T 103

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI---QPSDSHNSQ 55
              +M D+ +G  +GF FVTF + ++VDK+     H + G    +          S 
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
            +M DK T  S+GFGFV F++   V  V ++  H L+G
Sbjct: 46 CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.2 bits (150), Expect = 5e-12
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N K+ Y           G L++ V+ L K    ++N +D  G   LH A   GHL++ + 
Sbjct: 41  NAKDEYGLTPLYLATAHGHLEI-VEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 256 LIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
           L++  GADVN  D  G    D +    + DL E L
Sbjct: 99  LLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.9 bits (149), Expect = 6e-12
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  DE GL  L+ A   GHL++V+ L++  GADVN  D+ G   L  A  I H ++ E
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAE 97

Query: 289 YLVNSGA 295
            L+  GA
Sbjct: 98  VLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.4 bits (127), Expect = 6e-09
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
             + +    +    L  A   G    V+ L+   GADVN  D  G   L  A A  H ++
Sbjct: 5   HHHHHH-GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 287 IEYLVNSGA 295
           +E L+ +GA
Sbjct: 63  VEVLLKNGA 71

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           N  +   +      A  G L++  + L K    ++N  D+ G      +   G+  + + 
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEI-AEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

Query: 256 LIE 258
           L +
Sbjct: 132 LQK 134

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++   D+NG   LH A   GHL+VV+ L+E  GADV   D  G    D +    + DL E
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 289 YL 290
            L
Sbjct: 108 IL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++     +    L  A   G    V+ L+   GADV   D +G   L  A    H ++++
Sbjct: 19  HMG---SDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVK 74

Query: 289 YLVNSGA 295
            L+ +GA
Sbjct: 75  LLLEAGA 81

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
                H      L+ + G+ +    SD    L  A      D +  L+ +GA
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGA 48

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
           +A +M DK+TG S+GFGFVT+ + +AVD+V        +  ++ I
Sbjct: 116 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 160

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK-KK 59
           +  +M D  TG S+GFGF++F+   +VD+V     H+L+G  +  + +   + Q K  K
Sbjct: 31 TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQDKTGK 89

Query: 60 I 60
          I
Sbjct: 90 I 90

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.2 bits (156), Expect = 7e-12
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 208 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 267
                  LD L   LT   D  +  +          A + GHL V+  L E       + 
Sbjct: 101 ITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMA 157

Query: 268 D--SDGDYGLDYAKAIEHTDLIEYLVNSGA 295
              ++  +    A    H  ++  L     
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAP 187

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLK-DFNINQLDENGLNCLHWACDRGHLKV 252
                    +      A+ G L + + +L +L     +  +     +    A + GHL V
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHV-LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 178

Query: 253 VQHLIEKCGADVNVTD--SDGDYGLDYAKAIE--HTDLIEYLVNSGA 295
           +  L E            ++  Y   +A A+   H ++I +L++   
Sbjct: 179 LNRLCEL-APTEATAMIQAENYYAFRWA-AVGRGHHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
               +  +    L  A   G+      L+    + + +T ++  Y     +     DL  
Sbjct: 311 PTATIPGDANELLRLALRLGNQGACALLLSI-PSVLALTKANNYY---INETGGRLDLRA 366

Query: 289 YLVNSGAH 296
             +    H
Sbjct: 367 VALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 6/140 (4%)

Query: 160 DKEQEEINWDESQESGSKENEGQTKGWVNVSS--MINDESQLDDNEKNIYEW--AKEGKL 215
           D +   I W   +              + +S    I+       N + + +         
Sbjct: 15  DPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHY 74

Query: 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 275
           +   KQL         + +          C    L  +  L+      V V  ++     
Sbjct: 75  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA-LDTLCLLLTS-DEIVKVIQAENYQAF 132

Query: 276 DYAKAIEHTDLIEYLVNSGA 295
             A    H  ++  L     
Sbjct: 133 RLAAENGHLHVLNRLCELAP 152

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 11/89 (12%)

Query: 210 AKEGKLDMLVKQL-TKLKDFNINQLDENGLNCLHWAC-DRGHLKVVQHLIEKCGADVNVT 267
           A+ G L + + +L           +         WA   RGH  V+  L++     +   
Sbjct: 171 AENGHLHV-LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLA-- 226

Query: 268 DSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
                Y   +        +  ++      
Sbjct: 227 -----YAEIHEFEYGEKYVNPFIARHVNR 250

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 7/72 (9%)

Query: 231 NQLDENGLNCLHWACDRGH---LKVVQHLIE----KCGADVNVTDSDGDYGLDYAKAIEH 283
                 G   L     R     L  ++ L+     K  A       D +  L  A  + +
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331

Query: 284 TDLIEYLVNSGA 295
                 L++  +
Sbjct: 332 QGACALLLSIPS 343

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 12/102 (11%)

Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
                  W            + + V     L +          L+C+H     GH+ ++ 
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSI-VSYF--LSEIPSTFDLAILLSCIHITIKNGHVDMMI 178

Query: 255 HLIEKCGADVNVTDSDGD-YGLDYAKAIEHTDLIEYLVNSGA 295
            L++      N  +S      +  A   +  ++++ L     
Sbjct: 179 LLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A      + VK L      + +Q D+ G   L++A D G+++ V+  ++K    +     
Sbjct: 70  ATLEDTKI-VKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGK 126

Query: 270 DGDY-GLDYAKAIEHTDLIEYLVNSGA 295
            G      +A  +    ++ Y ++   
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIP 153

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 60.2 bits (147), Expect = 8e-11
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
           +K    L   +  + D +G +  ++A    ++++V  L+   GA  N+   + ++ L  A
Sbjct: 15  LKSF--LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQA 69

Query: 279 KAIEHTDLIEYLVNSGA 295
             +E T +++ L+ SG 
Sbjct: 70  ATLEDTKIVKILLFSGL 86

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 21/106 (19%)

Query: 202 NEKNIYEW-------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 254
           N  N   +            ++M ++ L K  D NI        +           ++ +
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEM-LQALFK-YDINIY-------SANLENVLLDDAEIAK 238

Query: 255 HLIEKCGADVNVTDSDGD----YGLDYAKAIEHTDLIEYLVNSGAH 296
            +IEK   +        D          + I     +  +  +   
Sbjct: 239 MIIEK-HVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
           ++  D NTG S+GFGF+ F++  +V+KV     H L+G
Sbjct: 41 CTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG 79

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           A++      + QL  L+D +++ +DENG   L +    G  K V+ L E  GAD++  D 
Sbjct: 53  ARKADEQA-LSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDM 108

Query: 270 -DGDYGLDYAKAIEHTDLIEYLVNSGA 295
             G   L  A      +++E LV  GA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGA 135

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKV 252
           D +  +          A  G     V+ L +    +++  D   GL  LH A      +V
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKC-VRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           V+ L+E  GAD+ V D  G   L+ A+ I  T      +  G 
Sbjct: 127 VEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
              A  +   + +  L+E    DV+  D +G   L +   +     +  L  +GA
Sbjct: 49  WWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +I   DE GL  L  A +        + ++  G  + +        +   +  E+ ++ E
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQF-GRRIGLEKVI---NVLEGQVFEYAEVDE 191

Query: 289 YLVNSGA 295
            +   G 
Sbjct: 192 IVEKRGK 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQ 254
             +N                +M V+ L      ++N+ +   G   LH A +     V++
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEM-VRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            L++  GAD       G   L  A    +  L   L   GA
Sbjct: 210 LLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG---LDYAKAIEHTD 285
            +   + +G   LH A      ++V+ L +  GAD+N    +   G   L  A   +   
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKP--EPTCGRTPLHLAVEAQAAS 206

Query: 286 LIEYLVNSGA 295
           ++E L+ +GA
Sbjct: 207 VLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +       G   L  A  R +  + + L    GA       D       + +   +D  +
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSDNRD 275

Query: 289 YL 290
             
Sbjct: 276 EG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
            ++  ++ G   LH A   G    V+ L    GA V V +  G   L  A  +       
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCAC 95

Query: 289 YLVNSGA 295
            L+    
Sbjct: 96  VLLQPRP 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGLDYAKAIEHTDL 286
              + E+G   LH A    H   +  L+    A    +++ +  G   L  A  +     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 287 IEYLVNSGA 295
           +E L  +GA
Sbjct: 61  VEKLYAAGA 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 23/114 (20%)

Query: 202 NEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQH 255
           + +N          A  G+    V++L       +   +  G   LH AC          
Sbjct: 39  DLQNDLGQTALHLAAILGEAST-VEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 256 LIEKCGADVNVTDSDGDYGLD--------------YAKAIEHTDLIEYLVNSGA 295
           L++          SD                     ++     +      +   
Sbjct: 97  LLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG 41
            V  D  TG SKGFGFV F   E   KV S   H+++G
Sbjct: 45 VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDG 82

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
           +  ++ D+N+  SKG  +V F   ++V          L G  + +Q S +
Sbjct: 54  DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 260
            +   I   A  GKLD L +++         + D++    LHWAC  GH ++V+ L++  
Sbjct: 5   VSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL- 62

Query: 261 GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           G  VN  D  G   L  A +    ++++ L+  GA
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
           +    N +++   +   ++  A +G L M+   +      + N  D  G   LH ACD  
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMV--HILLFYKASTNIQDTEGNTPLHLACDEE 183

Query: 249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            ++  + L+ + GA + + + +    L  AK      LI   +  G 
Sbjct: 184 RVEEAKFLVTQ-GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 222 LTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 281
              L +         G + LH A ++  L+ V+ L+E  GADV++      +        
Sbjct: 75  PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCF 133

Query: 282 E-------------HTDLIEYLVNSGAHSSN 299
                           D++ YL+ +    ++
Sbjct: 134 YFGELPLSLAACTKQWDVVTYLLENPHQPAS 164

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 19/113 (16%)

Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLK------DFNINQLDENGLNCLHWA---CDRGHLKV 252
           +   ++     G  + L   L  L+        +       G  CL  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 253 VQHLIEKC----------GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           +  L++             A        G   L  A        ++ LV +GA
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
             +G L M   +L           +  GL  L  A   G +++ +H++++          
Sbjct: 196 MYDGLLQM-GARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAHH 252

Query: 270 DGDY 273
              +
Sbjct: 253 HHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 39/133 (29%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNC------------- 240
              ++            ++  L   VK L +    +++                      
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQC-VKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 241 LHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIE---------------- 282
           L  A       VV +L+E     A +  TDS G+  L     I                 
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 283 HTDLIEYLVNSGA 295
              +   L  +  
Sbjct: 200 LLQMGARLCPTVQ 212

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKK 59
          ASV+ DK+ G    F  V   +  A + V S   H L G RL ++P +    Q    
Sbjct: 36 ASVVMDKDKG---VFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSPAS 89

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
              L +  + +       G   LH A +R ++ +V  L+E  GADV    +   +     
Sbjct: 83  TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKG 141

Query: 279 KAIE--------------HTDLIEYLVNSGAHSSN 299
           +                    ++++L+ +    ++
Sbjct: 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 241 LHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
           L  A     L +V+ L++     AD++  DS G+  L     +    +    
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           +  +   +  +   ++ +L  +L           +  GL  L  A   G + V+ +++++
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHP-TLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 260 CGADVN 265
                 
Sbjct: 256 -EIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 18/104 (17%)

Query: 210 AKEGKLDMLVKQLTK--LKDFNINQLDENGLNCLHWACDRGHLKVVQ---------HLIE 258
           A   +L + VK L +   +  +I+  D  G   LH   +     V            ++ 
Sbjct: 156 ACTNQLAI-VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 259 KC------GADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
                        +T+  G   L  A +     ++ Y++    H
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 14/80 (17%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIE------KCGADVNVTDSDGDYG---LDYAK 279
                       +  A  + + + ++ L+       K   D      D + G   L  A 
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF--KDPETGKTCLLKAM 62

Query: 280 AIE---HTDLIEYLVNSGAH 296
                   D I  L++    
Sbjct: 63  LNLHNGQNDTIALLLDVARK 82

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF--NINQLDENGLNCLHWACD 246
           V           + +++        + D +++ L         +N  D NG  CL+ A  
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
            G++ +V  L++  GAD  + +  G   +D+   +E
Sbjct: 293 LGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 6e-09
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 191 SMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKL---KDFNIN-QLDENGLNCLHWACD 246
           S+ ND S  +    +  +  +    D L++++         N+N  +DE+G   LHW   
Sbjct: 81  SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS 140

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDG 271
             +L++V+HL++  G++    D+ G
Sbjct: 141 IANLELVKHLVKH-GSNRLYGDNMG 164

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 10/145 (6%)

Query: 160 DKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWA-KEGKLDML 218
           ++  E  + ++ Q+  S ++  Q       ++ +N    +D++      W      L++ 
Sbjct: 88  NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLEL- 146

Query: 219 VKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNVTDSDGD--- 272
           VK L K    N    D  G +CL  A    +       + L++     + + DS      
Sbjct: 147 VKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 273 -YGLDYAKAIEHTDLIEYLVNSGAH 296
            + +  +     +   +Y ++    
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMG 230

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV----- 264
           AKE  +  L K L K +   ++Q    G   LH A    +L+    L+E    ++     
Sbjct: 11  AKENDVQALSKLL-KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPM 68

Query: 265 NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
                +G   L  A   ++ +L+  L+  GA
Sbjct: 69  TSELYEGQTALHIAVINQNVNLVRALLARGA 99

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIE---KCGADVN------VTDSDGDYGLDYAK 279
           +I   D  G   LH    + +      +           +      V ++ G      A 
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

Query: 280 AIEHTDLIEYLVNSGAH 296
              +  + ++L+    H
Sbjct: 206 VEGNIVMFQHLMQKRKH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 24/123 (19%)

Query: 195 DESQLDDNEKNIYEW------AKEGKLDMLVKQL------------TKLKDFNINQLDEN 236
           +        +                +++ V+ L              +  +  + L   
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNL-VRALLARGASVSARATGSVFHYRPHNLIYY 120

Query: 237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD----LIEYLVN 292
           G + L +A   G  ++V+ LIE  GAD+   DS G+  L       +      +   L++
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 293 SGA 295
              
Sbjct: 180 YDG 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 9/55 (16%), Positives = 23/55 (41%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           L  A     ++ +  L++  G +V+   + G+  L  A   ++ +    L+ +  
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
             +++ D  TGLSKG+ F  + +    D+  +  +   L   +L +Q
Sbjct: 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ-PSDSHNSQVKKK 59
             + +        K F F+ F++ +   +  + D  + +G  L I+ P D        K
Sbjct: 37 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHK 96

Query: 60 I 60
          +
Sbjct: 97 L 97

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 3   ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI------QPSDSHNSQV 56
             ++ D+ TG+SKG+GFV+F N   V K+         G +L +      Q   +++ Q 
Sbjct: 39  VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLSTYHVQP 96

Query: 57  KKKI 60
           +  I
Sbjct: 97  RPLI 100

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           +++    +G   LH+A        ++ L+ K  A V   +  G+  LD A+   H +  E
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEE 276

Query: 289 YLVNS 293
            L  +
Sbjct: 277 LLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 234 DENGLNCLHWAC---DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 290
                  LH A    ++  L +V  +I+  G  ++   +DG+  L YA      D ++ L
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 291 VNSGA 295
           +   A
Sbjct: 246 LKGRA 250

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 48
            +++ DK +G  KGF ++ F +KE+V    + D  +  G ++ + P
Sbjct: 35 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKKKI 60
           +  + +D  T   KGF FV ++  EA        +S +L G  + +    +         
Sbjct: 57  SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIID 116

Query: 61  ETKETAS 67
           +  E A 
Sbjct: 117 QLAEEAR 123

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
           +A++  D  TG  KG+GF+ ++  ++     S+
Sbjct: 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-------TDSHVLEGSRLSIQPSDSHNS 54
              V+   +T  SKG  F  F  +EA  K  +            L+G +L +  + + + 
Sbjct: 44  YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103

Query: 55  QVKKK 59
                
Sbjct: 104 AASGP 108

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
             +++ DK +G  KG+ ++ F  + +VD   + D  V  G  + + P 
Sbjct: 65  RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  VM+D  TG S+G+GFV+F +++    
Sbjct: 30 SGHVMWDMQTGSSRGYGFVSFTSQDDAQN 58

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N+++    G   LH+ C   + + ++ L+ +  A + + +  G+  LD AK ++H    E
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 289 YLVNS 293
            L  +
Sbjct: 256 LLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 194 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC---DRGHL 250
           +  ++L    + +      G L      +   +   +    E     LH A    DR  L
Sbjct: 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 185

Query: 251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
            +V  L++    +++     G   L Y    ++ + ++ L+   A
Sbjct: 186 HIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +A V+ D  TG SKG+GFV+F NK   + 
Sbjct: 35 DARVVKDMATGKSKGYGFVSFFNKWDAEN 63

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 42
            + ++ D+ TG+S+G GF+ F  +   ++     +     G+
Sbjct: 117 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVK 57
          +  ++ DK TG S G+GFV + + +  +K  +T +   L+   + +  +   ++ ++
Sbjct: 31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR 87

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS---------- 269
             + +  +     +   G   LH A +R     V+ L+EK GADV+              
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEG 134

Query: 270 ----DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN 299
                G+  L  A       ++ YL  +G   ++
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH--- 283
           +       G   L  A       +V +L E     AD+   DS G+  L    AI     
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191

Query: 284 ------TDLIEYLVNSGA 295
                 T + + L+   A
Sbjct: 192 ENTKFVTKMYDLLLIKCA 209

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 226 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273
                  L+ +GL+ L  A   G + + QH+I +             +
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAAAHHHHHH 260

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRL 44
             + DK T   KG+GFV F +  A  K  +   +  ++    
Sbjct: 35 TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
           + +V+ D  TG ++ FG+V F++ E ++K        + G+ + ++     +S+  +   
Sbjct: 42  DLAVV-DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAAR 100

Query: 62  T 62
           T
Sbjct: 101 T 101

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 4   SVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 46
            +      G SKG  ++ F+++   +K         ++G  +S+
Sbjct: 125 EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQ------PSDSHNS 54
           +  +  D+ T  S+GF FV F +K   +  + + D  VL+G  L +Q      P DSH+S
Sbjct: 76  DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 135

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI---QPSDSHNS 54
            V+ D+ T  S+GFGFVTF+N +         +   ++G ++ +     S  + S
Sbjct: 42 VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 97

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           N+NQ D  G   LH A   GH  +    + K GAD+   DS+G   L  A    + D++ 
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGRDPLTIAMETANADIVT 318

Query: 289 YLV 291
            L 
Sbjct: 319 LLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 227 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 286
           D N     ++    L  A     L   + L++  GA+VN  DS G   L +A  + HT L
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGL 283

Query: 287 IEYLVNSGA 295
               +  GA
Sbjct: 284 ACLFLKRGA 292

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ 47
           +V+ D+ TG+ KG  F+T+  +E+  K  S   +   L G    IQ
Sbjct: 43 LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
             +++ D  TGLSKG+ F  + +    D+  +  +   L   +L +Q
Sbjct: 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 8/78 (10%), Positives = 21/78 (26%)

Query: 3   ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIET 62
            + +        K F F+ F++ +   +  + D  + +G  L I+    +          
Sbjct: 39  GNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENP 98

Query: 63  KETASFSRMAENMEDRFN 80
                        +    
Sbjct: 99  SVYVPGVVSTVVPDSAHK 116

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +A V  DK T LSK FGFV+F N ++   
Sbjct: 69 SAKVFIDKQTSLSKCFGFVSFDNPDSAQV 97

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           +  VM+D  TG S+G+GFV+F +++    
Sbjct: 116 SGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
                D  T   KGF FVTF   E   K ++  D  V +G  L + PS
Sbjct: 37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 14 SKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
              G +TF+     ++V +   H L G++LS++P+
Sbjct: 46 LGCGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +A V+ D  TG SKG+GFV+F NK   + 
Sbjct: 44 DARVVKDMATGKSKGYGFVSFFNKWDAEN 72

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +A V  DK T LSK FGFV++ N  +   
Sbjct: 54 SAKVFIDKQTNLSKCFGFVSYDNPVSAQA 82

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            +M D +TG SKG+ F+ F + +A D 
Sbjct: 36 PKIMRDPDTGNSKGYAFINFASFDASDA 63

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
             ++    T    G   V F +     +         + G+ +  Q
Sbjct: 35 EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
             +  DK TG SKGF F++F  +E   +
Sbjct: 44 RIYLAKDKTTGQSKGFAFISFHRREDAAR 72

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 42
             +++ DK TG  +G  FV +  +E   +  S  ++ + EG 
Sbjct: 118 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVK 57
             +M D  TG S G+ FV F ++    +     +   +   RL +  +      +K
Sbjct: 32 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK 88

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  +  D  T   +GF FV F+  E    
Sbjct: 36 DIQIPLDYETEKHRGFAFVEFELAEDAAA 64

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            ++M DK+T  SKG  F+ F +K++   
Sbjct: 45 KVTIMKDKDTRKSKGVAFILFLDKDSAQN 73

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQ 55
                 ++  G SKG+  V   ++ +V K+       VL G ++ ++P+   N  
Sbjct: 86  ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLS 140

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
          +  ++ DK+T   KGF +V F   +++ +  + D  +L    L +
Sbjct: 43 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  +  D  T   +GF FV F+  E    
Sbjct: 41 DIQIPLDYETEKHRGFAFVEFELAEDAAA 69

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            ++ D+ T  S+G+GFV FQ+  +  +
Sbjct: 72 VKIVCDRETRQSRGYGFVKFQSGSSAQQ 99

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           A ++ D+ TG SKGFGFV F ++E    
Sbjct: 41 RARIVTDRETGSSKGFGFVDFNSEEDAKA 69

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          + S+++D+ +  S+GF FV F+N +   +
Sbjct: 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKE 72

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
          M+  ++ ++ TG+  G+ FV F +    +K    
Sbjct: 38 MSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          N  +M D +TG SKG+GF+TF + E   +
Sbjct: 34 NIVLMKDSDTGRSKGYGFITFSDSECARR 62

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHN 53
                 ++  G SKGF  V   ++ +  K+        L G    + P +   
Sbjct: 99  EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF 151

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 3  ASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 49
           ++   KN     LS GFGFV ++  E   K       H ++G +L ++ S
Sbjct: 35 CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
           + S+++D+ +  S+GF FV F+N +   +     +   L+G R+ + 
Sbjct: 75  DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           +  +  D  T   +GF FV F+  E    
Sbjct: 92  DIQIPLDYETEKHRGFAFVEFELAEDAAA 120

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQ------PSDSHNS 54
           +  +  D+ T  S+GF FV F +K   +  + + D  VL+G  L +Q      P DSH+S
Sbjct: 99  DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHS 158

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          ++  +++D+ TG  KG+GF  +Q++E    
Sbjct: 36 VSFRLVYDRETGKPKGYGFCEYQDQETALS 65

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
          N  +++D+ T   KGFGFV  Q +   + +   D+    G  + +
Sbjct: 30 NVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRV 74

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 32
          N  ++ DK T  ++GF FV   +     ++ 
Sbjct: 40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 41
            ++ D+ T  S+GF F+TF+N           +   L G
Sbjct: 37 VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI---QPSDSHNS 54
          M+  +         + F FVTF + +    +   D  +++G  + I   +P  + NS
Sbjct: 33 MDVFIPKP-----FRAFAFVTFADDQIAQSLCGED-LIIKGISVHISNAEPKHNSNS 83

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
                ++  G SKGF  V   ++ +  K
Sbjct: 32 EIKFFENRANGQSKGFALVGVGSEASSKK 60

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          N  +MFD  TG SKG+ F+ F++ E+   
Sbjct: 31 NLKMMFDPQTGRSKGYAFIEFRDLESSAS 59

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  +M D  TG SKG+GF+TF + E   K
Sbjct: 55 SIQLMMDSETGRSKGYGFITFSDSECAKK 83

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 51
              +++ + TG SKG+GF  +  K++  +  S      L    L +  +D+
Sbjct: 124 RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSI---QPSDSHNSQVK 57
              +   +  G  KGF  + ++  E  ++     D   L GS L +    P     S + 
Sbjct: 214 FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLA 272

Query: 58  KKIE 61
             I 
Sbjct: 273 ALIA 276

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 1   MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKK 58
           +N  +  D+ TG  +G+GFV F ++E  D      D   L G  + +  + +HN  +  
Sbjct: 43  VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNLSG 101

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 49
          N   + D  TG ++ FG+V F++ E ++K        + G+ + ++  
Sbjct: 45 NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFSTDSHVLEGSRLSIQ 47
          +  +  + +T   +GF FV F ++ +A D   + D   L+G  L +Q
Sbjct: 42 DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 4  SVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           +      G SKG  ++ F+++   +K
Sbjct: 42 EIRLVSQDGKSKGIAYIEFKSEADAEK 68

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKV 31
            A V+ D + G + G GFV F  K    K 
Sbjct: 125 KAVVVVD-DRGRATGKGFVEFAAKPPARKA 153

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
               N    KGFG+  F++ +++    S +   L   R+ +
Sbjct: 47 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
               K    +    F+ F+NK++ ++    +  +L    +S+  +D 
Sbjct: 244 PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK 290

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 3/49 (6%), Positives = 13/49 (26%)

Query: 9   KNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVK 57
            +   +  F  + F   +      +    V+  + + +         + 
Sbjct: 75  DSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMT 123

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETK 63
            +       S+ F ++   +KE     V   +   +EG  L  + S+      +    T 
Sbjct: 149 RLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATL 208

Query: 64  E 64
           E
Sbjct: 209 E 209

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 46
          ++  +         + F FVTF + +    +   D  +++G  + I
Sbjct: 39 VDVFIPKP-----FRAFAFVTFADDKVAQSLCGED-LIIKGISVHI 78

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 8/27 (29%)

Query: 90  VKKLDSSTLLKFY------ALYKQATV 110
           +KKL +S  LK Y      AL  +AT+
Sbjct: 22  LKKLQAS--LKLYADDSAPALAIKATM 46

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          A ++ DK+ G S+G G VTF+      +
Sbjct: 45 ADILEDKD-GKSRGIGTVTFEQSIEAVQ 71

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 2  NASVMFDKNTGL--SKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ--PSDSHNSQ 55
            +V+ D++     SKG  FVTF  ++A  +  +   +  VL G    IQ  P+DS  + 
Sbjct: 32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 91

Query: 56 VKK 58
            +
Sbjct: 92 AVE 94

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGS 42
              ++     GLS+G  FVTF  +            +  +EG 
Sbjct: 124 ECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC 165

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 12/63 (19%), Positives = 23/63 (36%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIE 61
               M        KG  FV F + E+  K   T     + + L I   D + ++  ++ +
Sbjct: 39  LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERK 98

Query: 62  TKE 64
             +
Sbjct: 99  QNK 101

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 48
          +  D+ TG  KG   V+F +  +        D     G+ + +  
Sbjct: 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 97

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          A VM +   G SKGFGFV F + E   K
Sbjct: 45 AKVMME--GGRSKGFGFVCFSSPEEATK 70

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK-VFSTDSHVLEGSRLSIQPSDS 51
          +  ++ ++  G  KG  +V ++N+    + V   D   ++ + + +  S+S
Sbjct: 46 DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
               N    KGFG+  F++ +++    S +   L   R+ +  +D 
Sbjct: 51 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            ++  D+  G  K FGFV F++ E+V  
Sbjct: 45 KVTICKDR-EGKPKSFGFVCFKHPESVSY 72

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 229 NINQLDENGLNCLHWAC---DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 285
                       LH A    ++  L +V  +I+  G  ++   +DG+  L YA      D
Sbjct: 163 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPD 221

Query: 286 LIEYLVNSGA 295
            ++ L+   A
Sbjct: 222 CLKLLLKGRA 231

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           N  +  D+ TG  KG+  V ++  +    
Sbjct: 50 KNIHLNLDRRTGYLKGYTLVEYETYKEAQA 79

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEA 27
             + F   TG  +G  F+TF NKE 
Sbjct: 54 GPPIQFRMMTGRMRGQAFITFPNKEI 79

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            ++ D  +G S+G GF   ++ E  + 
Sbjct: 55 TRILRDS-SGTSRGVGFARMESTEKCEA 81

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  ++F++    SKGFGFVTF+N    D+
Sbjct: 44 DVEIIFNERG--SKGFGFVTFENSADADR 70

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  ++F++    SKGFGFVTF+N    D+
Sbjct: 58 DVEIIFNERG--SKGFGFVTFENSADADR 84

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          A+V +D+ +G S G   V F+ K    K
Sbjct: 59 AAVHYDR-SGRSLGTADVHFERKADALK 85

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 2  NASVMFDKN-TGLSKGFGFVTFQNKEAVDK 30
             +  ++    LSKG+ +V F+N +  +K
Sbjct: 33 MIDMPVERMHPHLSKGYAYVEFENPDEAEK 62

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            V+ D+ TG+SKG+GFV F ++    +
Sbjct: 40 GKVVLDQ-TGVSKGYGFVKFTDELEQKR 66

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEA 27
           N  +  D+ TG  KG+  V ++  + 
Sbjct: 51 KNIHLNLDRRTGYLKGYTLVEYETYKE 77

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
             +  DK TG  KG   V++++      
Sbjct: 52 MIHIYLDKETGKPKGDATVSYEDPPTAKA 80

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDK 30
          +  D+ TG  KG   V+F +  +   
Sbjct: 47 LYTDRETGKLKGEATVSFDDPPSAKA 72

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 5  VMFDKNTGLSKGFGFVTFQNKEAVDK 30
           +     G SKG+ F+ F + E   +
Sbjct: 43 KVPQNQNGKSKGYAFIEFASFEDAKE 68

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 34
          +  V  D  T  S G+ +V FQ     ++   T
Sbjct: 44 SIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
            V+ D+N   SKG+GFV F+ +EA ++
Sbjct: 35 CKVVCDENG--SKGYGFVHFETQEAAER 60

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 3  ASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          A+V +D+ +G S G   V F+ +    K
Sbjct: 65 AAVDYDR-SGRSLGTADVHFERRADALK 91

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 2  NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFS--TDSHVLEGSRLSIQPSDS 51
             +      TG  +GFGFV F  K+   K F+    S  L G RL ++ +DS
Sbjct: 44 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 2  NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          N  +  D+ TG SKG+  V ++  +    
Sbjct: 55 NIHLNLDRRTGFSKGYALVEYETHKQALA 83

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
          + A +  +   G SKG G V F++ E  ++
Sbjct: 36 LYADIKME--NGKSKGCGVVKFESPEVAER 63

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDK 30
           N  +  D+ TG SKG+  V ++  +    
Sbjct: 101 NIHLNLDRRTGFSKGYALVEYETHKQALA 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 36/250 (14%), Positives = 70/250 (28%), Gaps = 65/250 (26%)

Query: 25  KEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD 84
           KE +D +  +   V    RL           V+K +E     ++  +   ++    Q   
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--- 104

Query: 85  YLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAW-----NSLGQMA 139
             PS++ ++        Y   +             + + +  +KYN         L Q  
Sbjct: 105 --PSMMTRM--------YIEQRD----------RLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQL 199
                +K + +  +   G                SG        K WV    +       
Sbjct: 145 LELRPAKNVLI--DGVLG----------------SG--------KTWV-ALDVCLSYKVQ 177

Query: 200 DDNEKNIYEWAKEGKL---DMLVKQLTKLK---DFNINQLDENGLNC---LHWACDRGHL 250
              +  I+ W         + +++ L KL    D N     ++  N    +H        
Sbjct: 178 CKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 251 KVVQHLIEKC 260
            +     E C
Sbjct: 237 LLKSKPYENC 246

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 5   VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
            +     G + G GFV F+N+             +    + + P       + +KI+   
Sbjct: 57  YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT--KKGMLEKIDMIR 114

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 2   NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 47
            A+V +D+ +G S G   V F+ +    K         L+G  + IQ
Sbjct: 117 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	99.9
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	99.9
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2lbb_A	96	Acyl COA binding protein; protein binding, structu	99.88
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	99.88
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	99.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.87
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.87
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.86
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	99.86
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.86
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	99.86
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.85
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.85
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.84
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.84
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.84
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.84
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.84
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.84
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.83
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.83
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.82
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.82
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.82
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.82
2rfa_A	232	Transient receptor potential cation channel subfa	99.82
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.82
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.81
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.81
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.81
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.81
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.81
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.81
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.81
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.8
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.8
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.8
2rfa_A	232	Transient receptor potential cation channel subfa	99.8
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.8
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.8
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.8
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.8
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.8
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.8
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.79
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.79
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.79
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.79
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2pnn_A	273	Transient receptor potential cation channel subfa	99.79
2etb_A	256	Transient receptor potential cation channel subfam	99.78
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.78
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.78
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.78
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.78
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.77
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.77
2pnn_A	273	Transient receptor potential cation channel subfa	99.77
2etb_A	256	Transient receptor potential cation channel subfam	99.77
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.77
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.76
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.75
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.74
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.74
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.74
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.74
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.71
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.67
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.67
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.66
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.64
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.59
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.58
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.5
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.31
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.29
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.29
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.28
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.28
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.26
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.25
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.25
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.23
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.22
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.19
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.19
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.18
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.18
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.18
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.17
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.16
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.16
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.16
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.15
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.15
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.14
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.14
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.13
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.13
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.12
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.12
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.12
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.11
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.11
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.11
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.1
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.1
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.1
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.1
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.09
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.09
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.09
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.09
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.09
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.09
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.09
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.09
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.09
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.08
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.08
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.08
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.08
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.07
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.07
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.07
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.07
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.07
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.07
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.07
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.07
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.06
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.06
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.06
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.05
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.05
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.05
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.05
2div_A	99	TRNA selenocysteine associated protein; structural	99.05
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.04
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.04
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.03
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.03
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.03
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.03
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.03
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.03
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.02
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.02
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.02
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.01
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.01
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.01
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.0
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.0
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.0
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.0
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.99
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.99
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	98.99
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.99
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.99
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.98
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.98
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.98
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.98
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.98
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.97
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.97
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.96
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.96
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.95
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.95
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.94
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.94
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.94
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.93
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.93
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.93
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.93
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.92
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.92
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.92
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	98.44
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.91
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.91
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.91
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.9
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.89
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.88
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.88
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.88
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.87
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	98.86
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.85
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.85
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.85
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.85
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.84
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.84
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.82
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.81
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.81
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.81
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.78
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.77
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.73
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.71
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.7
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.7
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.7
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.69
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.68
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.68
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.67
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.67
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.66
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.65
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.65
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.64
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.64
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.61
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.58
1x5p_A	97	Negative elongation factor E; structure genomics,	98.58
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.57
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.56
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.56
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.56
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.55
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.54
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.53
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.52
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.51
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.5
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.5
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.5
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.49
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.49
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.48
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.48
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.48
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.48
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.47
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.46
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	98.45
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.44
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.42
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.41
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.4
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.4
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.39
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.39
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.38
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.38
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.37
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.37
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.36
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.35
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.33
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.32
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.3
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.29
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.27
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.27
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.25
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.23
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.21
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.12
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.11
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.97
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.25
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	95.84
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	93.06
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	92.98
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	92.27
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	91.29
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	86.19
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	84.96
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	84.85
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	82.32
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	81.94
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	81.06
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	80.4

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=6.5e-27  Score=184.95  Aligned_cols=152  Identities=26%  Similarity=0.345  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCH
Q psy633          140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~  215 (300)
                      ..+|..+.++.|+.|+....+     ++.. ...+.++++.++..|...+.. ++..   .+..+..|.||||+|+..+.
T Consensus         9 ~~Aa~~G~~~~v~~Ll~~Gad-----vn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            9 IEAAENGNKDRVKDLIENGAD-----VNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-----CCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            458888999999999877654     2222 234567888888888763333 2222   45678889999999999888


Q ss_pred             HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      ..++++|++ .|+++|.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++||
T Consensus        83 ~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           83 KEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            888888888 899999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy633          296 HSSN  299 (300)
Q Consensus       296 ~~~~  299 (300)
                      +++.
T Consensus       161 ~ie~  164 (169)
T 4gpm_A          161 WLEH  164 (169)
T ss_dssp             ----
T ss_pred             CcCC
Confidence            9874

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1

Probab=99.90  E-value=4.2e-24  Score=147.65  Aligned_cols=85  Identities=29%  Similarity=0.652  Sum_probs=82.3

Q ss_pred             hhhHHHHHhhhhcccc--cCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633           75 MEDRFNQACDYLPSLV--KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN  152 (300)
Q Consensus        75 l~~~F~~a~~~v~~~~--~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~  152 (300)
                      |++.|++|+.+|++++  ..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++
T Consensus         2 l~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~   81 (89)
T 1hbk_A            2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVS   81 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            5689999999999998  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCc
Q psy633          153 EVDAGWE  159 (300)
Q Consensus       153 ~l~~~~~  159 (300)
                      ++.+.|.
T Consensus        82 ~l~~~~~   88 (89)
T 1hbk_A           82 EIFPYWQ   88 (89)
T ss_dssp             HHCTTTT
T ss_pred             HHccccc
Confidence            9999985

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=4.9e-24  Score=168.38  Aligned_cols=120  Identities=32%  Similarity=0.429  Sum_probs=106.8

Q ss_pred             CccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHH
Q psy633          178 ENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV  253 (300)
Q Consensus       178 ~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  253 (300)
                      +..|+..|.. .+..++..   .+..+..|.||||+|+..+...+.++|+. .|++++.+|..|+||||+||..|+.+++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            5667777876 34444433   46678899999999999888888888888 7999999999999999999999999999


Q ss_pred             HHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          254 QHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       254 ~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++||+++.
T Consensus        87 ~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~  131 (169)
T 4gpm_A           87 KLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT  131 (169)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999 9999999999999999999999999999999999999975

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.3e-24  Score=147.23  Aligned_cols=85  Identities=34%  Similarity=0.617  Sum_probs=81.6

Q ss_pred             hhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy633           75 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEV  154 (300)
Q Consensus        75 l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l  154 (300)
                      |++.|++|+.+|++++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++
T Consensus         1 l~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l   80 (86)
T 1st7_A            1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQL   80 (86)
T ss_dssp             CHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy633          155 DAGWE  159 (300)
Q Consensus       155 ~~~~~  159 (300)
                      .+.|.
T Consensus        81 ~~~~~   85 (86)
T 1st7_A           81 IAKYS   85 (86)
T ss_dssp             HHHHC
T ss_pred             hhhhc
Confidence            88773

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1

Probab=99.90  E-value=7.2e-24  Score=145.80  Aligned_cols=85  Identities=31%  Similarity=0.546  Sum_probs=81.7

Q ss_pred             hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633           74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE  153 (300)
Q Consensus        74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~  153 (300)
                      .|++.|++|+.+|+.++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||+++++
T Consensus         3 ~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~   82 (89)
T 3epy_A            3 ALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKE   82 (89)
T ss_dssp             HHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC
Q psy633          154 VDAGW  158 (300)
Q Consensus       154 l~~~~  158 (300)
                      +.+.+
T Consensus        83 l~~ky   87 (89)
T 3epy_A           83 LIEKY   87 (89)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            97654

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=149.79  Aligned_cols=88  Identities=39%  Similarity=0.790  Sum_probs=85.2

Q ss_pred             hhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633           73 ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN  152 (300)
Q Consensus        73 ~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~  152 (300)
                      +++++.|++|+.+|+.+...++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++|+
T Consensus         6 ~~l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~   85 (109)
T 2cop_A            6 SGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK   85 (109)
T ss_dssp             CCSHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCch
Q psy633          153 EVDAGWED  160 (300)
Q Consensus       153 ~l~~~~~~  160 (300)
                      ++.+.|..
T Consensus        86 ~l~~~~~~   93 (109)
T 2cop_A           86 KLDPGWNP   93 (109)
T ss_dssp             HHCTTCCC
T ss_pred             HHhhhhcc
Confidence            99999977

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=4.7e-23  Score=146.19  Aligned_cols=93  Identities=34%  Similarity=0.474  Sum_probs=86.1

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI  281 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~  281 (300)
                      +|+||||+|+..+...++++|+. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence            47899999988777777777777 799999999999999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCC
Q psy633          282 EHTDLIEYLVNSGAH  296 (300)
Q Consensus       282 g~~~iv~~Ll~~ga~  296 (300)
                      |+.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999986

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}

Probab=99.88  E-value=2e-23  Score=144.72  Aligned_cols=83  Identities=36%  Similarity=0.690  Sum_probs=80.5

Q ss_pred             hHHHHHhhhhcccc-cCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633           77 DRFNQACDYLPSLV-KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD  155 (300)
Q Consensus        77 ~~F~~a~~~v~~~~-~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~  155 (300)
                      ..|++|+.+|++++ ..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++.
T Consensus        12 ~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~   91 (96)
T 2lbb_A           12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLA   91 (96)
T ss_dssp             STHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc
Q psy633          156 AGWE  159 (300)
Q Consensus       156 ~~~~  159 (300)
                      +.|.
T Consensus        92 ~~~~   95 (96)
T 2lbb_A           92 PSWR   95 (96)
T ss_dssp             GGGT
T ss_pred             chhc
Confidence            9884

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=7.5e-23  Score=146.95  Aligned_cols=87  Identities=34%  Similarity=0.647  Sum_probs=84.3

Q ss_pred             hhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy633           74 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE  153 (300)
Q Consensus        74 ~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~  153 (300)
                      .++..|++|+.+|+.+...++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++|++
T Consensus        15 ~~~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~YI~lv~~   94 (116)
T 2cqu_A           15 ASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS   94 (116)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCch
Q psy633          154 VDAGWED  160 (300)
Q Consensus       154 l~~~~~~  160 (300)
                      +.+.|..
T Consensus        95 l~~~~~~  101 (116)
T 2cqu_A           95 LSPSLES  101 (116)
T ss_dssp             HCSCCCC
T ss_pred             Hcccccc
Confidence            9999976

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A

Probab=99.88  E-value=3.6e-23  Score=142.00  Aligned_cols=83  Identities=33%  Similarity=0.596  Sum_probs=80.0

Q ss_pred             hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633           76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD  155 (300)
Q Consensus        76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~  155 (300)
                      +..|++|+.+|++++..++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||++++++.
T Consensus         3 ~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~   82 (87)
T 2cb8_A            3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELK   82 (87)
T ss_dssp             HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy633          156 AGW  158 (300)
Q Consensus       156 ~~~  158 (300)
                      +.|
T Consensus        83 ~~~   85 (87)
T 2cb8_A           83 KKY   85 (87)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.87  E-value=3.2e-22  Score=156.36  Aligned_cols=147  Identities=19%  Similarity=0.199  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..+.++.++.|+....+     ++. ....+.++++.|+. |... +..++..   .+..+..|.||||+|+..+..
T Consensus        11 ~A~~~g~~~~v~~Ll~~~~~-----~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A           11 SAAARGDLEQLTSLLQNNVN-----VNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHTCHHHHHHHTTSCCC-----TTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHhCCCC-----ccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            37788889999999876543     211 22345678888888 7763 3333332   355678899999999987777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC-ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      .++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|.||||+|+..|+.+++++|+++||
T Consensus        84 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           84 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            78888888 799999999999999999999999999999999 8998 69999999999999999999999999999999


Q ss_pred             C
Q psy633          296 H  296 (300)
Q Consensus       296 ~  296 (300)
                      |
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            6

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.87  E-value=3.6e-22  Score=169.83  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC--------------------------
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND--------------------------  195 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~--------------------------  195 (300)
                      ++..+.+++++.|+....+     ++. ....+.+++|.|+..|+..+..++..                          
T Consensus        52 A~~~g~~~~v~~Ll~~ga~-----~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (282)
T 1oy3_D           52 AAILGEASTVEKLYAAGAG-----VLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH  125 (282)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----SSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhc
Confidence            6777788888888776543     111 22345677888888777632222211                          


Q ss_pred             -------------------------CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHCCC
Q psy633          196 -------------------------ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGH  249 (300)
Q Consensus       196 -------------------------~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~g~  249 (300)
                                               .+..+..|.||||+|+..+...++++|+. .|++++..+.. |+||||+|+..|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~  204 (282)
T 1oy3_D          126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQA  204 (282)
T ss_dssp             ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCC
Confidence                                     23457789999999999877778887777 79999999865 9999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      .+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++||+++..
T Consensus       205 ~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          205 ASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence            999999999 99999999999999999999999999999999999999863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=171.98  Aligned_cols=127  Identities=22%  Similarity=0.292  Sum_probs=112.1

Q ss_pred             ccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHC
Q psy633          172 QESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR  247 (300)
Q Consensus       172 ~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~  247 (300)
                      ..+.+++|.|+..|...+..++ ..   ....+..|.||+++|+..+...+.++|+. .|++++.+|..|+||||+||..
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHC
Confidence            3456889999999987444333 22   35567889999999999888888888888 7999999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |+.++|++||+ .|+++|.+|..|+||||+|+..|+.++|++|+++|||++.+
T Consensus       163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999 99999999999999999999999999999999999999863

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=144.32  Aligned_cols=89  Identities=35%  Similarity=0.642  Sum_probs=82.8

Q ss_pred             hhhhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHH
Q psy633           72 AENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY  147 (300)
Q Consensus        72 ~~~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~y  147 (300)
                      ..+|+..|++|+.+|+.++.    .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.|
T Consensus        21 ~~dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~Y  100 (119)
T 3flv_A           21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAY  100 (119)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            46889999999999999875    58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCch
Q psy633          148 IALLNEVDAGWED  160 (300)
Q Consensus       148 i~~v~~l~~~~~~  160 (300)
                      |++++++++....
T Consensus       101 I~~v~~l~~~~~~  113 (119)
T 3flv_A          101 VEEMKKIIETMPM  113 (119)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhCCC
Confidence            9999999876543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=5.5e-23  Score=156.36  Aligned_cols=121  Identities=19%  Similarity=0.202  Sum_probs=104.1

Q ss_pred             cCCCCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcC-CchHHHHHHHC
Q psy633          173 ESGSKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDR  247 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~-g~t~Lh~A~~~  247 (300)
                      ...++++.|+..|...+. .++..   .+..+..|.||||+|+. +...++++|.. .|++++.+|.. |+||||+|+..
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPVHDAARE   88 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHHHHHHHc
Confidence            445678888888876333 33322   35567889999999999 77778887777 79999999999 99999999999


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      |+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus        89 ~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           89 GFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999 9999999999999999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.86  E-value=7.1e-22  Score=155.82  Aligned_cols=145  Identities=23%  Similarity=0.227  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+....+     ++. ....+.+++|.|+..|...+.. ++..   .+..+..|.||||+|+..+...
T Consensus        21 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   94 (169)
T 2y1l_E           21 AARAGRDDEVRILMANGAD-----VNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE   94 (169)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            8888999999998876543     221 1234567788888888763333 3322   3456778899999998887778


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      ++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        95 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           95 IVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            8888887 789999999999999999999999999999999 89999999999999999999999999999999876

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}

Probab=99.86  E-value=2.5e-22  Score=142.22  Aligned_cols=88  Identities=35%  Similarity=0.673  Sum_probs=80.8

Q ss_pred             hhhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHH
Q psy633           73 ENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI  148 (300)
Q Consensus        73 ~~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi  148 (300)
                      .++++.|++|+.++++++.    .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||
T Consensus         6 ~~l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI   85 (106)
T 2wh5_A            6 PDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI   85 (106)
T ss_dssp             ---CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4577899999999999986    789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCch
Q psy633          149 ALLNEVDAGWED  160 (300)
Q Consensus       149 ~~v~~l~~~~~~  160 (300)
                      ++++++.+.+.+
T Consensus        86 ~~v~~l~~k~~~   97 (106)
T 2wh5_A           86 TEMKLVAQKVID   97 (106)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc
Confidence            999999877544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.86  E-value=7.7e-22  Score=155.15  Aligned_cols=147  Identities=20%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..+.++.++.++.....     ++. ....+.+++|.|+..|...+... +..   .+..+..|.||||+|+..+..
T Consensus         9 ~A~~~g~~~~v~~ll~~~~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            9 QLAAQGEMLYLATRIEQENV-----INH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             HHHHTTCHHHHHHHHHHSSC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHCCCHHHHHHHHHcCCC-----cCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            34555566666666544322     111 11233455555655555422222 211   233445555666666554444


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      .++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++++
T Consensus        83 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           83 DIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            44554444 456666666666666666666666666666666 666666666666666666666666666666665544

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0

Probab=99.86  E-value=5.6e-22  Score=140.24  Aligned_cols=84  Identities=35%  Similarity=0.563  Sum_probs=79.8

Q ss_pred             hhhhHHHHHhhhhccccc----CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q psy633           74 NMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIA  149 (300)
Q Consensus        74 ~l~~~F~~a~~~v~~~~~----~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~  149 (300)
                      .+++.|++|+.+|+.++.    .++++++++||++|||+++|+|+.++||++++.+++||+||+++++|+.++||+.||+
T Consensus         3 ~~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~   82 (106)
T 3fp5_A            3 MSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVE   82 (106)
T ss_dssp             CCHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            357899999999999974    6899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCC
Q psy633          150 LLNEVDAG  157 (300)
Q Consensus       150 ~v~~l~~~  157 (300)
                      +++++++.
T Consensus        83 ~v~~l~~~   90 (106)
T 3fp5_A           83 KLLEILKK   90 (106)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.86  E-value=4.2e-22  Score=157.40  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..+.++.++.++.....     ........+.+++|.|+..|...+...+.+    .+..+..|.||||+|+..+..
T Consensus         8 ~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            8 QLAAQGELDQLKEHLRKGDN-----LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTCSG-----GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHcCcc-----cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            36777888888888876533     111223456678999999988743333322    355677899999999998888


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        83 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           83 DIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            88888888 799999999999999999999999999999999 9999999999999999999999999999999998876


Q ss_pred             CC
Q psy633          297 SS  298 (300)
Q Consensus       297 ~~  298 (300)
                      +.
T Consensus       161 ~~  162 (172)
T 3v30_A          161 LF  162 (172)
T ss_dssp             HS
T ss_pred             Hh
Confidence            54

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=4.3e-21  Score=143.22  Aligned_cols=98  Identities=27%  Similarity=0.313  Sum_probs=88.2

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      +..+.|+||+|+..+...++++|.. .+.+++..|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence            4567899999988776667776776 699999999999999999999999999999999 99999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ..|+.+++++|+++|++++.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~  101 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTV  101 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC
T ss_pred             HcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=3.8e-21  Score=149.07  Aligned_cols=140  Identities=20%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.++....+     .  .....+.+++|.|+..|...+... +..   .+..+..|.||||+|+..+...
T Consensus         9 A~~~g~~~~v~~Ll~~g~~-----~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            9 AARAGQDDEVRILMANGAP-----F--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-----C--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----C--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            6667777778777655433     1  112234455666666555422222 211   2334455666666665555555


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      ++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        82 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            5555555 566666666666666666666666666666666 6666666666666666666666666666655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.85  E-value=1.2e-20  Score=147.93  Aligned_cols=146  Identities=18%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.++.....    . .......+.+++|.|+..|+..+... +..   .+..+..|.||||+|+..+...
T Consensus        15 A~~~g~~~~v~~ll~~~~~----~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   89 (165)
T 3twr_A           15 AAKAGDVETVKKLCTVQSV----N-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE   89 (165)
T ss_dssp             HHHHTCHHHHHHHCCTTTT----T-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHcCCC----C-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH
Confidence            7778888888888764221    0 00111122244444444444321111 111   2223344445555444444444


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      ++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+. |+.+++++|+++||
T Consensus        90 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           90 VAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            4444444 444444444445555555555555555555554 455555555555555555433 44455555544443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.85  E-value=1.6e-21  Score=154.07  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=107.1

Q ss_pred             CCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          175 GSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       175 ~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      .++++.|+..|.. .+..++..    .+..+..|.||||+|+..+...++++|.. .|++++..+..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcccCCCHHHHHHHCCC
Confidence            4567888888876 33344433    34467889999999999888788888877 799999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        82 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           82 TDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            999999999 9999999999999999999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=1.2e-22  Score=158.23  Aligned_cols=124  Identities=19%  Similarity=0.211  Sum_probs=99.6

Q ss_pred             cCCCCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCch-HHHHHHHC
Q psy633          173 ESGSKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLN-CLHWACDR  247 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t-~Lh~A~~~  247 (300)
                      .+.++++.|+..|...+. .++..   .+..+..|.||||+|+ .+...++++|+. .|++++.+|..|+| |||+|+..
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAARE   88 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHHC
Confidence            345667777777776333 23322   3456778999999987 455556666666 69999999999999 99999999


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        89 ~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           89 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             TCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             CCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            99999999999 9999999999999999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=7.6e-21  Score=144.45  Aligned_cols=96  Identities=28%  Similarity=0.322  Sum_probs=87.9

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~  118 (136)
T 2jab_A           41 NAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFD  118 (136)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHH
Confidence            3456678999999998777778888888 799999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcC
Q psy633          277 YAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~g  294 (300)
                      +|+..|+.+++++|++.|
T Consensus       119 ~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          119 ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTTCHHHHHHHHHC-
T ss_pred             HHHHCCCHHHHHHHHHcC
Confidence            999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.85  E-value=2.4e-21  Score=154.13  Aligned_cols=153  Identities=20%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCH
Q psy633          140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~  215 (300)
                      ..++..+.++.++.++.....    +++ .....+.+++|.|+..|...+..++ ..   .+..+..|.||||+|+..+.
T Consensus        10 ~~A~~~g~~~~v~~ll~~~~~----~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A           10 FTQCREGNAVAVRLWLDNTEN----DLN-QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             HHHHHHTCHHHHHHHHHCTTS----CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhcCcc----ccc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            456777778888887665321    011 1222345667777777766333222 22   34456667777777777666


Q ss_pred             HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      ..++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|+
T Consensus        85 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           85 RDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            667777766 677777777777788888887777778887777 777777777777888888777777777888777777


Q ss_pred             CCCC
Q psy633          296 HSSN  299 (300)
Q Consensus       296 ~~~~  299 (300)
                      +++.
T Consensus       163 ~~~~  166 (179)
T 3f6q_A          163 NLNR  166 (179)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            7764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=4.7e-21  Score=145.71  Aligned_cols=100  Identities=29%  Similarity=0.318  Sum_probs=90.8

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY  277 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~  277 (300)
                      ..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence            456789999999988666666777777 699999999999999999999999999999999 999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCC
Q psy633          278 AKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       278 A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..|+.+++++|+++|++++.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.85  E-value=2.8e-21  Score=161.12  Aligned_cols=124  Identities=22%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             CCCCCccCccccce-eeeecccCCc--ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633          174 SGSKENEGQTKGWV-NVSSMINDES--QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL  250 (300)
Q Consensus       174 ~~~~~~~a~~~g~~-~~~~~~~~~~--~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  250 (300)
                      +.++++.|+..|.. .+..++....  ..+..+.|+||.|+..+...++++|+. .|++++..|..|+||||+||..|+.
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~   83 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHT   83 (239)
T ss_dssp             --------------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            34567777777765 3333333321  223556788887776555556666666 5778888888888888888888888


Q ss_pred             HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        84 ~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           84 EIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             HHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence            88888888 7888888888888888888888888888888888888764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.85  E-value=1.3e-21  Score=157.40  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             cCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633          173 ESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG  248 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  248 (300)
                      .+.+++|.|+..|...+... +..   .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcC
Confidence            34566777777776532222 221   34456667778877777666666666666 57777777777888888888888


Q ss_pred             CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       113 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A          113 YSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             CHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            8888888887 7888887777788888888888888888888887777764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=1.8e-21  Score=143.44  Aligned_cols=99  Identities=27%  Similarity=0.352  Sum_probs=91.9

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      .+..|.|+||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            56789999999988777777777777 799999999999999999999999999999999 9999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +..|+.+++++|+++||+++.
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCc
Confidence            999999999999999999763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.84  E-value=8.6e-22  Score=156.78  Aligned_cols=123  Identities=26%  Similarity=0.307  Sum_probs=107.3

Q ss_pred             CCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          175 GSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       175 ~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      .++++.|+..|.. .+..++..    .+..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence            3457778888876 33333332    35578889999999999888888888888 799999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        85 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           85 RDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            999999999 9999999999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=2e-21  Score=144.94  Aligned_cols=98  Identities=34%  Similarity=0.463  Sum_probs=91.1

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|.||||+|+..+...+.++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus        29 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~  106 (126)
T 1n0r_A           29 NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLH  106 (126)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence            4456788999999998777778888887 799999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      +|+..|+.+++++|+++|||
T Consensus       107 ~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          107 LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999996

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.84  E-value=1.9e-21  Score=163.42  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-ccc----CCcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIN----DESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~----~~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ++..+.+++++.|+....+     ++. ....+.+++|.|+..|...+.. ++.    ..+..+..|.||||+|+..+..
T Consensus        64 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           64 AARYSRSDAAKRLLEASAD-----ANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE  137 (253)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence            5666778888888766433     111 2234567889999888763333 332    2345677899999999887777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus       138 ~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          138 GMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  215 (253)
T ss_dssp             SHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            77777777 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       216 ~~~  218 (253)
T 1yyh_A          216 RDI  218 (253)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.84  E-value=6.9e-21  Score=161.62  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhh--cccccccCCCCCccCccccce--eeeecccC---CcccCcCcchHHHHHHhC
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEI--NWDESQESGSKENEGQTKGWV--NVSSMIND---ESQLDDNEKNIYEWAKEG  213 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~g~~--~~~~~~~~---~~~~~~~~~t~l~~a~~~  213 (300)
                      .++..+.+++|+.|+...........  .........++++.++..+..  .+..++..   .+..+..|.||||+|+..
T Consensus        17 ~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~   96 (269)
T 4b93_B           17 RAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH   96 (269)
T ss_dssp             HHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            47888899999999876543211100  111122334567777766653  33444433   456788999999999998


Q ss_pred             CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633          214 KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       214 ~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  293 (300)
                      +...++++|+. .+++++..+..|.||||+|+..++.+++++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++
T Consensus        97 g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  174 (269)
T 4b93_B           97 GRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH  174 (269)
T ss_dssp             TCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred             CcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            88888888888 799999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy633          294 GAHSSN  299 (300)
Q Consensus       294 ga~~~~  299 (300)
                      |++++.
T Consensus       175 gadvn~  180 (269)
T 4b93_B          175 GASINA  180 (269)
T ss_dssp             TCCTTC
T ss_pred             CCCCCc
Confidence            999985

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.84  E-value=4.2e-21  Score=158.30  Aligned_cols=153  Identities=18%  Similarity=0.104  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC-----CcccCcCcchHHHHHHhCCH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND-----ESQLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~-----~~~~~~~~~t~l~~a~~~~~  215 (300)
                      ++..+.+++++.|+.....   .++.......+.++++.|+..|...+.. ++..     .+..+..|.||||+|+..+.
T Consensus        43 A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  119 (228)
T 2dzn_A           43 SVSFQAHEITSFLLSKMEN---VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW  119 (228)
T ss_dssp             HHHTTCHHHHHHHHHTCTT---CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHhcccc---ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC
Confidence            5666777888888776522   1122213345668899999988873333 3322     24567789999999999888


Q ss_pred             HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHH-Hc
Q psy633          216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLV-NS  293 (300)
Q Consensus       216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~  293 (300)
                      ..++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..|+.+++++|+ +.
T Consensus       120 ~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~  197 (228)
T 2dzn_A          120 FEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY  197 (228)
T ss_dssp             HHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            888888888 799999999999999999999999999999999 88 999999999999999999999999999999 89


Q ss_pred             CCCCCC
Q psy633          294 GAHSSN  299 (300)
Q Consensus       294 ga~~~~  299 (300)
                      |++++.
T Consensus       198 ga~~~~  203 (228)
T 2dzn_A          198 GAEYDL  203 (228)
T ss_dssp             CCCSCC
T ss_pred             CCCCCc
Confidence            999875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.84  E-value=4e-21  Score=158.83  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|...+...+ ..   .+..+..|.||||+|+..+...
T Consensus        47 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A           47 ACSAGHTEIVEFLLQLGVP-----VND-KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE  120 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----SCC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCcHHHHHHHHHhCCC-----CCC-cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            6677778888888765433     111 223456789999998887433333 22   3456778999999999988888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|.. .|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus       121 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          121 IAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            8888888 799999999999999999999999999999999 99999999999999999999999999999999999998


Q ss_pred             CC
Q psy633          298 SN  299 (300)
Q Consensus       298 ~~  299 (300)
                      +.
T Consensus       199 ~~  200 (231)
T 3aji_A          199 YI  200 (231)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.84  E-value=3.7e-21  Score=151.71  Aligned_cols=122  Identities=26%  Similarity=0.339  Sum_probs=106.1

Q ss_pred             CCCccCccccceeee-ecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633          176 SKENEGQTKGWVNVS-SMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK  251 (300)
Q Consensus       176 ~~~~~a~~~g~~~~~-~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  251 (300)
                      ++++.|+..|...+. .++..   .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~   94 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLE   94 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            346677777776333 33332   34567889999999999888888888888 79999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        95 ~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           95 IVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999 9999999999999999999999999999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.84  E-value=7e-21  Score=156.51  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-cc----CCcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IN----DESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~----~~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|...+... +.    ..+..+..|.||||+|+..+..
T Consensus        32 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  105 (223)
T 2f8y_A           32 AARYSRSDAAKRLLEASAD-----ANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE  105 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcH
Confidence            5556666777766654332     111 12234456666666666522222 21    1233455666777766665555


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       106 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          106 GMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             HHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55555555 566677666667777777777777777777776 6777777777777777777777777777777777776


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       184 ~~~  186 (223)
T 2f8y_A          184 RDI  186 (223)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=6e-21  Score=145.01  Aligned_cols=100  Identities=20%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCC-CCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD-GDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~-g~TpL  275 (300)
                      +..+..|.||||+|+..+...++++|+. .|++++.+|..|+||||+|+. |+.+++++|++ .|++++.+|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHH
Confidence            5567789999999998777777887777 799999999999999999999 99999999999 99999999999 99999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+|+..|+.+++++|+++|++++.
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~  106 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDV  106 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=3e-20  Score=141.11  Aligned_cols=98  Identities=32%  Similarity=0.365  Sum_probs=89.9

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      ...+.|+||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence            4567899999988777677777777 699999999999999999999999999999999 99999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ..|+.+++++|+++|++++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~  108 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNA  108 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC
T ss_pred             HcCCHHHHHHHHHcCCCCcC
Confidence            99999999999999999875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.83  E-value=3.7e-21  Score=163.57  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+.......  .++ .....+.+++|.|+..|+..+.. ++..   .+..+..|.||||+|+..+...
T Consensus        16 A~~~g~~~~v~~Ll~~g~~~~--~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~   92 (282)
T 1oy3_D           16 AVIHQHEPFLDFLLGFSAGHE--YLD-LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT   92 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSG--GGG-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred             HHHcCCHHHHHHHHhcCCCcc--ccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Confidence            666777788877765322200  011 12335678899999999874433 3332   3456788999999999988888


Q ss_pred             HHHHHhhcCCCC-----------------------------------------------ccccCcCCchHHHHHHHCCCH
Q psy633          218 LVKQLTKLKDFN-----------------------------------------------INQLDENGLNCLHWACDRGHL  250 (300)
Q Consensus       218 v~~ll~~~~~~~-----------------------------------------------~~~~d~~g~t~Lh~A~~~g~~  250 (300)
                      ++++|.. .+.+                                               ++..+..|+||||+|+..|+.
T Consensus        93 ~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  171 (282)
T 1oy3_D           93 CACVLLQ-PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA  171 (282)
T ss_dssp             HHHHHSS-SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred             hhHhhhc-cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH
Confidence            8888877 5543                                               677888999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCC-CCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          251 KVVQHLIEKCGADVNVTDSD-GDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      +++++|++ .|++++.++.. |+||||+|+..|+.+++++|+++|++++.+
T Consensus       172 ~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  221 (282)
T 1oy3_D          172 EMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR  221 (282)
T ss_dssp             HHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            99999999 99999999854 999999999999999999999999999863

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.83  E-value=1.2e-20  Score=156.83  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-c-------CCcccCcCcchHHHHHHhC
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-N-------DESQLDDNEKNIYEWAKEG  213 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~-------~~~~~~~~~~t~l~~a~~~  213 (300)
                      ++..+.+++++.|+....+     +.. ....+.++++.|+..|...+...+ .       ..+..+..|.||||+|+..
T Consensus        53 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           53 AVITTLPSVVRLLVTAGAS-----PMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  126 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----ccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence            5666677888887765433     111 123456789999988886333322 2       2345677899999999987


Q ss_pred             CHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633          214 KLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       214 ~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  292 (300)
                      +...++++|.. .|++++..+ ..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       127 ~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  204 (241)
T 1k1a_A          127 ECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  204 (241)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77778888887 799999988 789999999999999999999999 999999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy633          293 SGAHSSN  299 (300)
Q Consensus       293 ~ga~~~~  299 (300)
                      +|++++.
T Consensus       205 ~ga~~~~  211 (241)
T 1k1a_A          205 SGADSSL  211 (241)
T ss_dssp             TTCCTTC
T ss_pred             cCCCCCC
Confidence            9999875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.83  E-value=1.6e-20  Score=155.82  Aligned_cols=150  Identities=21%  Similarity=0.260  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC----CcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND----ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~----~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ++..+.+++++.|......     ++ .....+.++++.|+..|...+... +..    .+..+..|.||||+|+..+..
T Consensus        51 A~~~~~~~~v~~Ll~~g~~-----~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  124 (237)
T 3b7b_A           51 AAENNHLEAVKYLIKAGAL-----VD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV  124 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCC-----CC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHhCCHHHHHHHHhCCCC-----CC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence            5666778888888876543     11 122345678999999888743333 322    344677899999999998888


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       125 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          125 DLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence            88888888 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       203 ~~~  205 (237)
T 3b7b_A          203 VTL  205 (237)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.82  E-value=9.4e-21  Score=162.69  Aligned_cols=150  Identities=18%  Similarity=0.154  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.|+....+     ++.. ...+.+++|.|+..|+..+..++ ..   .+..+..|.||||+|+..+...
T Consensus        47 A~~~g~~~~v~~Ll~~g~~-----~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~  120 (299)
T 1s70_B           47 ACSSGDTEEVLRLLERGAD-----INYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (299)
T ss_dssp             HHHHTCHHHHHHHHHHCCC-----TTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----Cccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            7778888888888765433     2222 23456789999999987443333 22   3456778999999999877777


Q ss_pred             HHHHHhhcCCCCccccCc------------------------------------------------------------CC
Q psy633          218 LVKQLTKLKDFNINQLDE------------------------------------------------------------NG  237 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~------------------------------------------------------------~g  237 (300)
                      ++++|.. .|++++..+.                                                            .|
T Consensus       121 ~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g  199 (299)
T 1s70_B          121 IAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG  199 (299)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             HHHHHHh-CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence            8888887 7888776553                                                            47


Q ss_pred             chHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       238 ~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          200 GTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            788999999999999999999 9999999999999999999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.82  E-value=2.2e-21  Score=161.11  Aligned_cols=149  Identities=16%  Similarity=0.138  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---------CcccCcCcchHHHHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---------ESQLDDNEKNIYEWAK  211 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---------~~~~~~~~~t~l~~a~  211 (300)
                      ++..+.+++++.|+....+     ++. ....+.+++|.|+..|+..+..+ +..         .+..+..|.||||+|+
T Consensus        52 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  125 (236)
T 1ikn_D           52 AVITNQPEIAEALLGAGCD-----PEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS  125 (236)
T ss_dssp             HHHTTCHHHHHCCCSCCCC-----SCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH
Confidence            6777788999999877544     111 22355678999999888733333 222         2446678999999999


Q ss_pred             hCCHHHHHHHHhhcCCCCccccCc-CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          212 EGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       212 ~~~~~~v~~ll~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      ..+...++++|+. .|++++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus       126 ~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L  203 (236)
T 1ikn_D          126 IHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQL  203 (236)
T ss_dssp             HTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             HcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence            9888888888887 7999999998 89999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHcCCCCC
Q psy633          291 VNSGAHSS  298 (300)
Q Consensus       291 l~~ga~~~  298 (300)
                      +++||++.
T Consensus       204 l~~ga~~~  211 (236)
T 1ikn_D          204 GQLTLENL  211 (236)
T ss_dssp             HTTSCGGG
T ss_pred             HHcchhhh
Confidence            99999754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=6e-21  Score=149.08  Aligned_cols=119  Identities=23%  Similarity=0.352  Sum_probs=101.3

Q ss_pred             CCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633          176 SKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK  251 (300)
Q Consensus       176 ~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  251 (300)
                      ++++.|+..|.. .+..++..   .+..+..|.||||+|+. +...++++|.. .|++++.+|..|+||||+|+..|+.+
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~   84 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLD   84 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            346677777766 33333332   34567889999999999 66667777777 69999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus        85 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           85 TLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             HHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence            9999999 99999999999999999999999999999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.82  E-value=1.7e-20  Score=155.10  Aligned_cols=152  Identities=20%  Similarity=0.210  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .++..+.++.++.++.....     ........+.++++.|+..|...+.. ++..   .+..+..|.||||+|+..+..
T Consensus        12 ~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   86 (231)
T 3aji_A           12 NLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD   86 (231)
T ss_dssp             HHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Confidence            36777778888877654322     11223345678899999999874333 3332   355677899999999988777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .++++|.. .|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        87 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A           87 EIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            88888888 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       165 ~~~  167 (231)
T 3aji_A          165 TNI  167 (231)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.82  E-value=7.1e-21  Score=159.92  Aligned_cols=150  Identities=15%  Similarity=0.165  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHH
Q psy633          143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDML  218 (300)
Q Consensus       143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v  218 (300)
                      .....+++++.|+.....     +.......+.+++|.|+..|...+.. ++..   .+..+..|.||||+|+..+...+
T Consensus        31 ~~~~~~~~v~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  105 (253)
T 1yyh_A           31 EEEDAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV  105 (253)
T ss_dssp             --------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             hcCCChHHHHHHHHccCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            345577778777765433     22223456678899999999874333 3332   45567889999999998777777


Q ss_pred             HHHHhhcCCC-CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          219 VKQLTKLKDF-NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       219 ~~ll~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      +++|.. .+. +++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus       106 v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          106 FQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             HHHHHH-STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH-cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            777777 454 899999999999999999999999999999 99999999999999999999999999999999999998


Q ss_pred             CC
Q psy633          298 SN  299 (300)
Q Consensus       298 ~~  299 (300)
                      +.
T Consensus       184 ~~  185 (253)
T 1yyh_A          184 DM  185 (253)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.82  E-value=1.6e-20  Score=155.40  Aligned_cols=149  Identities=15%  Similarity=0.105  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCccccceeeeecccC-C--------cccCcCcchHHHHHH
Q psy633          142 EAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-E--------SQLDDNEKNIYEWAK  211 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~--------~~~~~~~~t~l~~a~  211 (300)
                      ++..+.++.++.|+.. ..+     ++. ....+.+++|.|+..|+..+...+.+ .        ...+..|.||||+|+
T Consensus        10 A~~~g~~~~v~~Ll~~~g~~-----~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~   83 (232)
T 2rfa_A           10 AAKENDVQALSKLLKFEGCE-----VHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV   83 (232)
T ss_dssp             HHHTTCHHHHHHHHTTTCSC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhcCCC-----ccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH
Confidence            6777788888888775 322     111 23456678999999998743333322 1        345668999999999


Q ss_pred             hCCHHHHHHHHhhcCCCCccccCc-------------CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          212 EGKLDMLVKQLTKLKDFNINQLDE-------------NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       212 ~~~~~~v~~ll~~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      ..+...++++|.. .|++++..+.             .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus        84 ~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           84 INQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             HcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence            9888888888888 7999988765             79999999999999999999999 9999999999999999999


Q ss_pred             HhcCcHHHH----HHHHHcCCCCC
Q psy633          279 KAIEHTDLI----EYLVNSGAHSS  298 (300)
Q Consensus       279 ~~~g~~~iv----~~Ll~~ga~~~  298 (300)
                      +..|+.+++    ++|+++|++++
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHcCChHHHHHHHHHHHhcCCchh
Confidence            999999988    99999999873

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.82  E-value=3.7e-21  Score=154.80  Aligned_cols=145  Identities=15%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.|+....+     ++. ....+.+++|.|+..|...+...+.+    .+..+..|.||||+|+..+...
T Consensus        42 A~~~g~~~~v~~Ll~~~~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (192)
T 2rfm_A           42 ACMLGMENAIDKLVENFDK-----LED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE  115 (192)
T ss_dssp             HHHHTCGGGHHHHHHHHCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHhccc-----ccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            5555566666666543222     111 22346678999999998744333322    4556788999999999877778


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      ++++|.. .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       116 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          116 MSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            8888888 799999999999999999999999999999999 99999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=4.1e-21  Score=150.96  Aligned_cols=125  Identities=23%  Similarity=0.336  Sum_probs=110.1

Q ss_pred             cCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633          173 ESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG  248 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  248 (300)
                      .+.+++|.|+..|... +..++..   .+..+..|.||||+|+..+...++++|.. .|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcC
Confidence            3467789999999873 3333322   45577889999999999888888888888 79999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           81 YTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             CHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999 9999999999999999999999999999999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.82  E-value=2.4e-20  Score=150.85  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.++.....    +++. ....+.+++|.|+..|...+... +..   .+..+..|.||||+|+..+...
T Consensus        12 A~~~g~~~~v~~ll~~~~~----~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   86 (201)
T 3hra_A           12 AANQRDTKKVKEILQDTTY----QVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE   86 (201)
T ss_dssp             HHHTTCHHHHHHHHTCTTC----CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHhccHHHHHHHHHcCCC----CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            5666667777777655431    1111 12245567888888777633333 322   3445667788888887766666


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCc-----HHHHHHHH
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEH-----TDLIEYLV  291 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~-----~~iv~~Ll  291 (300)
                      ++++|....+.+++..+..|.||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..+.     .+++++|+
T Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll  165 (201)
T 3hra_A           87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM  165 (201)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH-HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence            66666632677888888888888888888888888888888 66 8888888888888888888776     78888888


Q ss_pred             HcCCCCCC
Q psy633          292 NSGAHSSN  299 (300)
Q Consensus       292 ~~ga~~~~  299 (300)
                      ++|++++.
T Consensus       166 ~~ga~~~~  173 (201)
T 3hra_A          166 ENGADQSI  173 (201)
T ss_dssp             HTTCCTTC
T ss_pred             HCCCCCCc
Confidence            88888765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=4.3e-20  Score=154.50  Aligned_cols=118  Identities=23%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             ccCccccce-eeeecccCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHH
Q psy633          179 NEGQTKGWV-NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI  257 (300)
Q Consensus       179 ~~a~~~g~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  257 (300)
                      ..+...|+. .+..........+..|.||||+|+..+...++++|+.  +++++.+|..|+||||+||..|+.++|++|+
T Consensus        20 l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   97 (244)
T 3ui2_A           20 LIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLA   97 (244)
T ss_dssp             EEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            344455554 2333333344556789999999999888888888877  8899999999999999999999999999999


Q ss_pred             hhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          258 EKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       258 ~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      + .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.
T Consensus        98 ~-~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  139 (244)
T 3ui2_A           98 E-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV  139 (244)
T ss_dssp             H-TTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             H-cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9 999999999 8899999999999999999999999999975

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.81  E-value=1.6e-20  Score=169.86  Aligned_cols=125  Identities=19%  Similarity=0.243  Sum_probs=107.0

Q ss_pred             cCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633          173 ESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG  248 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  248 (300)
                      .+.++++.|+..|+..+..++..    .+..+..|.||||+|+..+...+.++|.. .|++++..|..|+||||+|+..|
T Consensus       244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g  322 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYG  322 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSS
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcC
Confidence            45577888888887744433322    34567789999999988777777777777 69999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +.++|++|++ .|+++|.+|..|+||||+|+..|+.++|++|+++||+++.
T Consensus       323 ~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          323 NIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             cHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            9999999999 9999999999999999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.81  E-value=2.7e-20  Score=158.14  Aligned_cols=158  Identities=21%  Similarity=0.226  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhh----cccccccCCCCCccCccccceeeee-cccC----CcccCcCcchHHHHHHh
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEI----NWDESQESGSKENEGQTKGWVNVSS-MIND----ESQLDDNEKNIYEWAKE  212 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~----~~~~~~~~~t~l~~a~~  212 (300)
                      ++..+.+++++.|.....+......    .......+.++++.|+..|+..+.. ++..    .+..+..|.||||+|+.
T Consensus       112 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  191 (285)
T 1wdy_A          112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL  191 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            5556667777777665433110000    0001334567899999988873333 3322    35567889999999988


Q ss_pred             CCH----HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHH
Q psy633          213 GKL----DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE  288 (300)
Q Consensus       213 ~~~----~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~  288 (300)
                      .+.    ..+.++|.. .|++++.+|..|.||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.++++
T Consensus       192 ~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             CSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence            666    788888888 899999999999999999999999999999998679999999999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q psy633          289 YLVNSGAHSSNT  300 (300)
Q Consensus       289 ~Ll~~ga~~~~~  300 (300)
                      +|+++||+++..
T Consensus       271 ~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          271 LLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHSSCSCCS
T ss_pred             HHHHcCCCCCcc
Confidence            999999999863

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.81  E-value=2.6e-20  Score=158.69  Aligned_cols=153  Identities=19%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeee-eccc----CCcccCcCcchHHHHHH----
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVS-SMIN----DESQLDDNEKNIYEWAK----  211 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~-~~~~----~~~~~~~~~~t~l~~a~----  211 (300)
                      .++..++++.++.+.....+   ..++. .+..+.+++|.|+..|...+. .++.    ..+..+..|.||||+|+    
T Consensus        82 ~a~~~~~~~~~~~l~~~~~~---~~~n~-~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           82 PELVRRHLVTFRAMSARLLD---YVVNI-ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             HHHHHHHHHHHHHHCHHHHH---HHHTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hcCcC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            46777788777777543221   11222 223455677777777776322 2222    23345566667777666    


Q ss_pred             -hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          212 -EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       212 -~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                       ..+...++++|.. .|.+++..+..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             3334444444444 466666666667777777777777777777776 6777777777777777777777777777777


Q ss_pred             HH-cCCCCCC
Q psy633          291 VN-SGAHSSN  299 (300)
Q Consensus       291 l~-~ga~~~~  299 (300)
                      ++ .|++++.
T Consensus       236 l~~~gad~~~  245 (276)
T 4hbd_A          236 LAVPSCDISL  245 (276)
T ss_dssp             HTSTTCCTTC
T ss_pred             HhcCCCCCcC
Confidence            76 6766654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.81  E-value=1.7e-19  Score=139.89  Aligned_cols=143  Identities=17%  Similarity=0.115  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.++.. ..   .+++. ....+.+++|. +..|.. .+..++..   .+..+..|.||||+|+..+...
T Consensus         9 A~~~g~~~~v~~ll~~-~~---~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            9 AAARGDVQEVRRLLHR-EL---VHPDA-LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHTCHHHHHHHHHT-TC---CCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHh-hC---cCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            6777778888887755 21   01111 12345677888 777776 33333322   3556778999999999988888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  293 (300)
                      ++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        83 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           83 TLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888 799999999999999999999999999999999 7 99999999999999999999999999999874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.81  E-value=2.3e-20  Score=150.96  Aligned_cols=145  Identities=21%  Similarity=0.189  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-----CCcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-----DESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-----~~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|...+...+.     ..+..+..|.||||+|+..+..
T Consensus        46 A~~~~~~~~v~~Ll~~g~~-----~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  119 (201)
T 3hra_A           46 AVHNNDIEIAKALIDRGAD-----INL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI  119 (201)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCC-CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCH
Confidence            6777788899888876544     111 2234567899999998874433332     2456778899999999987777


Q ss_pred             HHHHHHhhcCC-CCccccCcCCchHHHHHHHCCC-----HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          217 MLVKQLTKLKD-FNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       217 ~v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      .++++|.. .+ ++++.+|..|+||||+|+..+.     .+++++|++ .|++++.+|..|+||||+|+..|+.+++++|
T Consensus       120 ~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          120 DNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHHHHHH-HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHH-cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence            77777777 45 9999999999999999999998     999999999 9999999999999999999999999999999


Q ss_pred             HHcC
Q psy633          291 VNSG  294 (300)
Q Consensus       291 l~~g  294 (300)
                      +++|
T Consensus       198 l~~G  201 (201)
T 3hra_A          198 AQYN  201 (201)
T ss_dssp             HTCC
T ss_pred             HhcC
Confidence            9987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.81  E-value=3e-20  Score=152.72  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+.....    .+. .....+.++++.|+..|...+...+ ..   .+..+..|.||||+|+..+...
T Consensus        65 A~~~~~~~~v~~Ll~~~~~----~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  139 (223)
T 2f8y_A           65 AVSADAQGVFQILIRNRAT----DLD-ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  139 (223)
T ss_dssp             HHHTTCHHHHHHHHHBTTS----CTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC----Ccc-cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH
Confidence            5666677788777765431    011 1223456788999988887333333 22   3556788999999999888888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|.. .|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus       140 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          140 AAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            8888888 799999999999999999999999999999999 99999999999999999999999999999999999976


Q ss_pred             C
Q psy633          298 S  298 (300)
Q Consensus       298 ~  298 (300)
                      +
T Consensus       218 ~  218 (223)
T 2f8y_A          218 S  218 (223)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.81  E-value=7.9e-20  Score=146.00  Aligned_cols=99  Identities=26%  Similarity=0.321  Sum_probs=91.5

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHH
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLD  276 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~  276 (300)
                      ..+..|.||||+|+..+...++++|+.  +.+++..|..|+||||+|+..|+.+++++|++ .|+++|.+| ..|+||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHH
Confidence            346688999999998877777787777  88999999999999999999999999999999 999999998 89999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+..|+.+++++|+++|++++.
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~  138 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEV  138 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcC
Confidence            99999999999999999999875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.81  E-value=9.2e-21  Score=167.53  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=46.3

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCC-----ccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN-----INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY  273 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~-----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T  273 (300)
                      .+..|.||||+|+..+...++++|+. .|++     ++..|..|+||||+|+..|+.++|++|++ .|++++.+|..|+|
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t  246 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV  246 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence            34444455554444444444444443 3444     44444445555555555555555555554 45555555555555


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCC
Q psy633          274 GLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       274 pL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      |||+|+..|+.+++++|+++|++
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHHHHhChHHHHHHHHHcCCc
Confidence            55555555555555555554443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.81  E-value=4.7e-20  Score=153.10  Aligned_cols=154  Identities=22%  Similarity=0.252  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.++...... ...++. ....+.+++|.|+..|...+..+ +..   .+..+..|.||||+|+..+...
T Consensus        15 A~~~g~~~~v~~Ll~~~~~~-~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   92 (236)
T 1ikn_D           15 AIIHEEKALTMEVIRQVKGD-LAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA   92 (236)
T ss_dssp             HHHTTCSSSSSCCCC------CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHcCChhHHHHHHHHhhcc-HHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            45555555666655543220 001111 12345688999999998744333 332   3556788999999999877777


Q ss_pred             HHHHHhhcCCCC------ccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHH
Q psy633          218 LVKQLTKLKDFN------INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       218 v~~ll~~~~~~~------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      ++++|.. .+.+      ++..+..|+||||+|+..|+.+++++|++ .|++++.++. .|+||||+|+..|+.+++++|
T Consensus        93 ~v~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D           93 SVGVLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             HHHHHHH-STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHh-cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777 5654      57788899999999999999999999999 9999999997 999999999999999999999


Q ss_pred             HHcCCCCCC
Q psy633          291 VNSGAHSSN  299 (300)
Q Consensus       291 l~~ga~~~~  299 (300)
                      +++||+++.
T Consensus       171 l~~ga~~~~  179 (236)
T 1ikn_D          171 LKCGADVNR  179 (236)
T ss_dssp             HTTTCCSCC
T ss_pred             HHcCCCCCc
Confidence            999999875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.81  E-value=4.1e-20  Score=152.35  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccCC-----cc-cCcCcchHHHHHHhCC
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MINDE-----SQ-LDDNEKNIYEWAKEGK  214 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~~-----~~-~~~~~~t~l~~a~~~~  214 (300)
                      +++.+.++.++.++.....     ........+.+++|.|+..|...+.. ++...     .. .+..|.||||+|+..+
T Consensus         9 A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~   83 (228)
T 2dzn_A            9 ACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   83 (228)
T ss_dssp             HHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence            5666677777777655432     12223445678899999999873333 33221     22 5678999999998877


Q ss_pred             HHHHHHHHhhcCC--CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633          215 LDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       215 ~~~v~~ll~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  292 (300)
                      ...+.++|.. .|  .+++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        84 ~~~~~~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           84 NLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             CHHHHHHHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7777777777 66  8899999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cC-CCCCC
Q psy633          293 SG-AHSSN  299 (300)
Q Consensus       293 ~g-a~~~~  299 (300)
                      .| ++++.
T Consensus       162 ~g~~~~~~  169 (228)
T 2dzn_A          162 LGKSAVNW  169 (228)
T ss_dssp             TTCCCSCC
T ss_pred             cCcccccC
Confidence            99 88875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.81  E-value=3.5e-20  Score=153.58  Aligned_cols=101  Identities=23%  Similarity=0.222  Sum_probs=92.6

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL  275 (300)
                      +..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++++.++ ..|+|||
T Consensus        48 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL  125 (229)
T 2vge_A           48 SQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAF  125 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCCTG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHH
Confidence            4456789999999999888888888888 799999999999999999999999999999999 999999997 5999999


Q ss_pred             HHH--HhcCcHHHHHHHHHcCCCCCC
Q psy633          276 DYA--KAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       276 ~~A--~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+|  +..|+.+++++|+++|++++.
T Consensus       126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~  151 (229)
T 2vge_A          126 EKCDPYREGYADCATYLADVEQSMGL  151 (229)
T ss_dssp             GGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcChHHHHHHHHHcCCCccc
Confidence            999  999999999999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=8.3e-20  Score=150.31  Aligned_cols=98  Identities=23%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             CcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhc-CCCccccCCCCCcHHHHH
Q psy633          200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-GADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       200 ~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-g~~~~~~d~~g~TpL~~A  278 (300)
                      +..|.|+||+|+..+...++++|+. .|++++.+|..|+||||+||..|+.+++++|++ . |++++.+|..|+||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT-QPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTT-STTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHc-CCCCCccccCCCCCCHHHHH
Confidence            4455666666665444444444444 466666666666666666666666666666666 5 666666666666666666


Q ss_pred             HhcCcHHHHHHHHHcCCCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +..|+.+++++|+++||+++.
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~  168 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDL  168 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCcc
Confidence            666666666666666666654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=9.4e-20  Score=155.33  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=90.7

Q ss_pred             cCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          199 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      .+..|.||||+|+..   +...++++|+. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.|||
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL  242 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPL  242 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHH
Confidence            356799999999886   67777887777 699999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      |+|+..|+.+++++|+++|++..
T Consensus       243 ~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          243 DIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999753

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.81  E-value=1.2e-20  Score=147.92  Aligned_cols=122  Identities=25%  Similarity=0.285  Sum_probs=104.7

Q ss_pred             CCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633          176 SKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL  250 (300)
Q Consensus       176 ~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  250 (300)
                      ++++.|+..|.. .+..++..    ....+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.
T Consensus        10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~   88 (165)
T 3twr_A           10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHY   88 (165)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHcCcH
Confidence            345666666665 33333332    34456778899999999888888888888 7999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        89 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           89 EVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            99999999 9999999999999999999999999999999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=2.7e-21  Score=161.23  Aligned_cols=149  Identities=17%  Similarity=0.116  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+..+.++.++....+     ++.  .....++++.|+..|...+ ..++..   .+..+..|.||||+|+..++..
T Consensus        12 a~~~~~~~~~~~ll~~g~~-----~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~   84 (239)
T 1ycs_B           12 GKRTNLRKTGSERIAHGMR-----VKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE   84 (239)
T ss_dssp             --------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             hhhhhhHHHHHHHhccCCC-----ccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            5566677777777766544     111  1233466888888888733 333333   4556888999999999877777


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC-cHHHHH--HhcCcHHHHHHHHHcC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYA--KAIEHTDLIEYLVNSG  294 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~~g  294 (300)
                      ++++|+. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.++..|. ||||+|  +..|+.+++++|+++|
T Consensus        85 ~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           85 IVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            8888887 799999999999999999999999999999999 9999999998777 999999  7889999999999999


Q ss_pred             CCCCC
Q psy633          295 AHSSN  299 (300)
Q Consensus       295 a~~~~  299 (300)
                      ++++.
T Consensus       163 a~~~~  167 (239)
T 1ycs_B          163 EKMGI  167 (239)
T ss_dssp             HHTTT
T ss_pred             hcccc
Confidence            98764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=149.67  Aligned_cols=100  Identities=28%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY  277 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~  277 (300)
                      ..+..+.|+||+|+..+...++++|+. .|++++..|..|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHH
Confidence            445678899999887666666666666 599999999999999999999999999999999 999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCC
Q psy633          278 AKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       278 A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..|+.+++++|+++|++++.
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFA  115 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCccc
Confidence            9999999999999999999875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.80  E-value=9.6e-20  Score=151.08  Aligned_cols=150  Identities=17%  Similarity=0.248  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|...+...+ ..   .+..+..|.||||+|+..+...
T Consensus        18 A~~~g~~~~v~~Ll~~g~~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   91 (237)
T 3b7b_A           18 AAEAGHVDICHMLVQAGAN-----IDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE   91 (237)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----TTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCcHHHHHHHHHcCCC-----cCc-cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            6777888888888776443     111 123456789999999987443333 32   3456778999999999888878


Q ss_pred             HHHHHhhcCC-CCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          218 LVKQLTKLKD-FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       218 v~~ll~~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      ++++|.. .+ .+++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus        92 ~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  169 (237)
T 3b7b_A           92 VVQYLLS-NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD  169 (237)
T ss_dssp             HHHHHHT-TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred             HHHHHHh-CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            8888877 45 8999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       170 ~~~  172 (237)
T 3b7b_A          170 LHA  172 (237)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.80  E-value=6.2e-20  Score=151.84  Aligned_cols=124  Identities=17%  Similarity=0.137  Sum_probs=104.9

Q ss_pred             CCCCCccCccccce-eeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCc-----cccCcCCchHHHH
Q psy633          174 SGSKENEGQTKGWV-NVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNI-----NQLDENGLNCLHW  243 (300)
Q Consensus       174 ~~~~~~~a~~~g~~-~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~-----~~~d~~g~t~Lh~  243 (300)
                      +.+++|.|+..|.. .+..++..    .+..+..|.||||+|+..+...++++|.. .++++     +..|..|+||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccccccccCCCCcCHHHH
Confidence            34668888888876 33334332    35568889999999998877777777777 57776     6677899999999


Q ss_pred             HHHCCCHHHHHHHHhhcCCCccccCC-------------CCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          244 ACDRGHLKVVQHLIEKCGADVNVTDS-------------DGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       244 A~~~g~~~~v~~Ll~~~g~~~~~~d~-------------~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+..|+.+++++|++ .|++++..+.             .|.||||+|+..|+.+++++|+++|++++.
T Consensus        82 A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           82 AVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999 9999999876             799999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.80  E-value=4.6e-20  Score=157.79  Aligned_cols=149  Identities=17%  Similarity=0.116  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecc-cCC--cccCcCcchHHHHHHhCCHHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI-NDE--SQLDDNEKNIYEWAKEGKLDML  218 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~--~~~~~~~~t~l~~a~~~~~~~v  218 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|...+..++ ...  ...+..|.||||+|+..+...+
T Consensus        99 A~~~g~~~~v~~Ll~~ga~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~  172 (285)
T 3d9h_A           99 ACLGGHLSCVKILLKHGAQ-----VNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC  172 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----SSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHH
T ss_pred             HHHCCcHHHHHHHHHCCCC-----CCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            6666778888888765433     111 223456789999998887433333 221  1234568999999998777778


Q ss_pred             HHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          219 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       219 ~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      +++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++. |..|+||||+|+..|+.+++++|+++|++++
T Consensus       173 v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          173 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ  249 (285)
T ss_dssp             HHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            888887 799999999999999999999999999999999 9999995 8899999999999999999999999999987


Q ss_pred             C
Q psy633          299 N  299 (300)
Q Consensus       299 ~  299 (300)
                      .
T Consensus       250 ~  250 (285)
T 3d9h_A          250 A  250 (285)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.80  E-value=1.2e-19  Score=158.87  Aligned_cols=99  Identities=25%  Similarity=0.306  Sum_probs=92.1

Q ss_pred             CcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          200 DDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       200 ~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+.||||+|+..   +...+.++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||
T Consensus       208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~  285 (351)
T 3utm_A          208 PQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALH  285 (351)
T ss_dssp             TTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHH
Confidence            45678999999887   66788888888 899999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      +|+..|+.+++++|+++||+++..
T Consensus       286 ~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          286 RAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCc
Confidence            999999999999999999998863

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.80  E-value=5.5e-20  Score=156.64  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhhcCCCc-hhhhhhhcccccccCCCCCccCc-----cccce-eeeeccc---CCcccCcCcchHHHHHH
Q psy633          142 EAMSKYIALLNEVDAGWE-DKEQEEINWDESQESGSKENEGQ-----TKGWV-NVSSMIN---DESQLDDNEKNIYEWAK  211 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~a~-----~~g~~-~~~~~~~---~~~~~~~~~~t~l~~a~  211 (300)
                      ++..+.+++++.|+.... +     ++ .....+.++++.++     ..+.. .+..++.   .....+..|.||||+|+
T Consensus       118 A~~~g~~~~v~~Ll~~g~~~-----~~-~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~  191 (276)
T 4hbd_A          118 SVSHANFPVVQQLLDSGVCK-----VD-KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV  191 (276)
T ss_dssp             HHHTTCHHHHHHHHHTSCCC-----TT-CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCc-----CC-CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            677778888888877654 2     11 12234556677766     33433 2222222   23445677999999999


Q ss_pred             hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633          212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       212 ~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  291 (300)
                      ..+...++++|+. .|++++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.+++++|+
T Consensus       192 ~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  270 (276)
T 4hbd_A          192 SHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY  270 (276)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9888888888888 899999999999999999999999999999998579999999999999999999999999999999


Q ss_pred             HcC
Q psy633          292 NSG  294 (300)
Q Consensus       292 ~~g  294 (300)
                      +++
T Consensus       271 ~~~  273 (276)
T 4hbd_A          271 SRM  273 (276)
T ss_dssp             HHC
T ss_pred             hcc
Confidence            864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.80  E-value=6.5e-20  Score=142.03  Aligned_cols=120  Identities=22%  Similarity=0.224  Sum_probs=100.8

Q ss_pred             CccCcccccee-eeecccC--CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHH
Q psy633          178 ENEGQTKGWVN-VSSMIND--ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ  254 (300)
Q Consensus       178 ~~~a~~~g~~~-~~~~~~~--~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  254 (300)
                      ++.|+..|... +..++..  ....+..|.||||+|+..+...++++|.. .|++++..+..|+||||+|+..|+.++++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   84 (153)
T 1awc_B            6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVE   84 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcChHHHHH
Confidence            44555555542 2222222  12246779999999998777777888877 79999999999999999999999999999


Q ss_pred             HHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          255 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       255 ~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        85 ~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           85 VLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            9999 9999999999999999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.80  E-value=4.2e-19  Score=151.83  Aligned_cols=124  Identities=20%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             cCCCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633          173 ESGSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG  248 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  248 (300)
                      .+.+++|.|+..|... +..++..   .+..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|
T Consensus        58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSG  136 (285)
T ss_dssp             CSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHT
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcC
Confidence            3445566666666542 2222221   23445566666666666555555555555 56666666666666666666666


Q ss_pred             CHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          249 HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +.+++++|++ .|++++..+ .|.||||+|+..|+.+++++|++.|++++.
T Consensus       137 ~~~~v~~Ll~-~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  185 (285)
T 3d9h_A          137 SWDCVNLLLQ-HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDH  185 (285)
T ss_dssp             CHHHHHHHHH-TTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHH-CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            6666666666 666665433 366666666666666666666666666553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.80  E-value=7.6e-20  Score=142.24  Aligned_cols=99  Identities=18%  Similarity=0.092  Sum_probs=89.0

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCc-HHH
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLD  276 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~T-pL~  276 (300)
                      ..+..+.|+||+|+..+...++++|+. .|++++..|..|+||||+|+ .|+.+++++|++ .|++++.+|..|+| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHH
Confidence            345678999999988777777777777 69999999999999999996 999999999999 99999999999999 999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+..|+.+++++|+++|++++.
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~  106 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDV  106 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSC
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcc
Confidence            99999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.79  E-value=3.7e-19  Score=132.58  Aligned_cols=96  Identities=33%  Similarity=0.467  Sum_probs=87.7

Q ss_pred             CcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhc
Q psy633          202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI  281 (300)
Q Consensus       202 ~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~  281 (300)
                      +|.||||.|+..+...++++|.. .+.+++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHc
Confidence            47899999988666666666666 599999999999999999999999999999999 9999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCC
Q psy633          282 EHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       282 g~~~iv~~Ll~~ga~~~~  299 (300)
                      |+.+++++|+++|++++.
T Consensus        79 ~~~~~~~~Ll~~g~~~~~   96 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNA   96 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTC
T ss_pred             ChHHHHHHHHHcCCCCcc
Confidence            999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.79  E-value=3.5e-20  Score=161.70  Aligned_cols=151  Identities=13%  Similarity=0.032  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCH---
Q psy633          143 AMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKL---  215 (300)
Q Consensus       143 a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~---  215 (300)
                      +.....++++.+.....+     ++......+.+++|.|+..|+..+..+ +..   .+..+..|.||||+|+..++   
T Consensus       105 ~~~~~~~~~~~l~~~g~d-----vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          105 FDSLLQEVNDAFPNTQLN-----LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             HHHHHHHHHHHCTTSCCC-----SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred             HHhhHHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence            344444555555544333     333234567789999999998744433 332   45678889999999999776   


Q ss_pred             -HHHHHHHhhcCCCCccccCcCCchHHHHHHH----CCCHHHHHHHHhhcCC----------------------------
Q psy633          216 -DMLVKQLTKLKDFNINQLDENGLNCLHWACD----RGHLKVVQHLIEKCGA----------------------------  262 (300)
Q Consensus       216 -~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~g~----------------------------  262 (300)
                       ..+..+|.. ...+++.+|..|+||||+|+.    .|+.+++++|++ .++                            
T Consensus       180 ~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~-~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  257 (327)
T 1sw6_A          180 SGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIVKKQNRPIQSGTNEKESKPNDKNGE  257 (327)
T ss_dssp             TTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHHHGGGCCEEEC--------------
T ss_pred             HHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH-HHHHHHhcccchHHHhhhhcccCCccccccc
Confidence             444444444 346799999999999999999    999999999998 643                            


Q ss_pred             -----------------CccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          263 -----------------DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       263 -----------------~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                                       ++|.+|..|+||||+|+..|+.++|++|+++|||++..
T Consensus       258 g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             --CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             CCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                             58889999999999999999999999999999999863

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.79  E-value=9.4e-20  Score=159.36  Aligned_cols=124  Identities=26%  Similarity=0.346  Sum_probs=63.8

Q ss_pred             CCCCccCccccceeeee-ccc----CCcccCcCcchHHHHHHh----CCHHHHHHHHhhcCCCCccccCcCCchHHHHHH
Q psy633          175 GSKENEGQTKGWVNVSS-MIN----DESQLDDNEKNIYEWAKE----GKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC  245 (300)
Q Consensus       175 ~~~~~~a~~~g~~~~~~-~~~----~~~~~~~~~~t~l~~a~~----~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~  245 (300)
                      .+++|.|+..|+..+.. ++.    ..+..+..|.|+++.++.    ++.+.+.++|+. .|++++.+|..|+||||+|+
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~  247 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAV  247 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHH
Confidence            34555555555542222 221    123344445555543321    233445555555 45555555555555555555


Q ss_pred             HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       246 ~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ..|+.+++++|+...|+++|.+|..|+||||+|+..|+.++|++|+++|||++.
T Consensus       248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            555555555555523555555555555555555555555555555555555543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.79  E-value=1.5e-19  Score=140.25  Aligned_cols=119  Identities=24%  Similarity=0.307  Sum_probs=98.9

Q ss_pred             CCccCccccce-eeeeccc----CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHH
Q psy633          177 KENEGQTKGWV-NVSSMIN----DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK  251 (300)
Q Consensus       177 ~~~~a~~~g~~-~~~~~~~----~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  251 (300)
                      +++.|+..|.. .+..++.    ..+..+..|.||||+ +..+...++++|.. .|++++.+|..|+||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            35556666655 2222322    235567889999999 66666666777777 69999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          252 VVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       252 ~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++++|++ .|++++.+|..|+||||+|+..|+.+++++|++. ++++.
T Consensus        83 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           83 TLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            9999999 9999999999999999999999999999999998 88765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.79  E-value=1e-19  Score=161.57  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-cc------CCcccCcCcchHHHHHHhCC
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IN------DESQLDDNEKNIYEWAKEGK  214 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~------~~~~~~~~~~t~l~~a~~~~  214 (300)
                      ++..+.+++++.|+....+     ++. ....+.++++.|+..|+..+..+ +.      ..+..+..|.||||+|+..+
T Consensus       173 A~~~g~~~iv~~Ll~~ga~-----~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~  246 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGAD-----PTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  246 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----SCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             HHHcChHHHHHHHHHCCCC-----Ccc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence            6777778888888765433     111 12234456666776666533222 22      22344566667776666544


Q ss_pred             ---HHHHHHHHhhcCCCCccc--------cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633          215 ---LDMLVKQLTKLKDFNINQ--------LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH  283 (300)
Q Consensus       215 ---~~~v~~ll~~~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~  283 (300)
                         ...++++|.. .|++++.        .|..|+||||+|+..|+.++|++|++..|++++.+|..|+||||+|+..|+
T Consensus       247 ~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          247 GRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             STTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcchHHHHHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence               5555555555 4666654        445666777777777777777777762336677777677777777777777


Q ss_pred             HHHHHHHHHcCCCCCC
Q psy633          284 TDLIEYLVNSGAHSSN  299 (300)
Q Consensus       284 ~~iv~~Ll~~ga~~~~  299 (300)
                      .++|++|+++||+++.
T Consensus       326 ~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          326 IEVVMYLIQQGASVEA  341 (373)
T ss_dssp             HHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHcCCCccC
Confidence            7777777777766654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=3e-20  Score=148.95  Aligned_cols=147  Identities=12%  Similarity=-0.003  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-----eeeecccC---CcccCcCcchHHHHHHh
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-----NVSSMIND---ESQLDDNEKNIYEWAKE  212 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-----~~~~~~~~---~~~~~~~~~t~l~~a~~  212 (300)
                      .+++.+.++.+..+.....       +...+..+.+++|.|+..|..     .+..++..   .+..+..|+||||+|+.
T Consensus        12 ~Aa~~g~~~~~~~l~~~~~-------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A           12 AAAMLGTYEDFLELFEKGY-------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             HHHHHSCHHHHHHHHHHSS-------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCc-------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            3566666666665543221       112223467889999888853     23333333   45677889999998876


Q ss_pred             CCH------HHHHHHHhhcCCCCccccCcCCc-hHHHHHHHCC-----CHHHHHHHHhhcCCCccccCCCCCcHHHHHHh
Q psy633          213 GKL------DMLVKQLTKLKDFNINQLDENGL-NCLHWACDRG-----HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA  280 (300)
Q Consensus       213 ~~~------~~v~~ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~  280 (300)
                      .+.      ..++++|+. .|+++|.+|..|+ ||||+|+..+     +.+++++|++..|++++.+|..|+||||+|+.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             cCCcchhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            543      456777777 7999999999998 9999999854     35688888875799999999999999999999


Q ss_pred             cCcHHHHHHHHHcCC
Q psy633          281 IEHTDLIEYLVNSGA  295 (300)
Q Consensus       281 ~g~~~iv~~Ll~~ga  295 (300)
                      .|+.++|++|+++..
T Consensus       164 ~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          164 CQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999999999987543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=3.9e-19  Score=129.93  Aligned_cols=92  Identities=32%  Similarity=0.375  Sum_probs=82.0

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      ...+..|.|+||+|+..+...++++|+. .|++++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHH
Confidence            5567889999999988666667777777 699999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHH
Q psy633          277 YAKAIEHTDLIEYL  290 (300)
Q Consensus       277 ~A~~~g~~~iv~~L  290 (300)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.79  E-value=4.4e-20  Score=156.69  Aligned_cols=126  Identities=13%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             cCCCCCccCccccceeeeecc-cC---CcccCc--------------CcchHHHHHHhCCHHHHHHHHhhc--CCCCccc
Q psy633          173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLDD--------------NEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQ  232 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~--------------~~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~  232 (300)
                      .+.+++|.|+..|+..+..++ ..   .+..+.              .|.||||+|+..+...++++|+..  .|++++.
T Consensus       100 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~  179 (273)
T 2pnn_A          100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA  179 (273)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee
Confidence            566889999999887433333 22   233333              699999999987777777777663  4899999


Q ss_pred             cCcCCchHHHHHHHCCC---------HHHHHHHHhhcCCCcc-------ccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-
Q psy633          233 LDENGLNCLHWACDRGH---------LKVVQHLIEKCGADVN-------VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA-  295 (300)
Q Consensus       233 ~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~g~~~~-------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-  295 (300)
                      +|..|+||||+|+..|+         .+++++|++ .|++++       .+|..|+||||+|+..|+.+++++|+++|| 
T Consensus       180 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            99999999999999998         899999999 999997       489999999999999999999999999999 


Q ss_pred             CCCC
Q psy633          296 HSSN  299 (300)
Q Consensus       296 ~~~~  299 (300)
                      |++.
T Consensus       259 dp~~  262 (273)
T 2pnn_A          259 EPEC  262 (273)
T ss_dssp             ----
T ss_pred             Cchh
Confidence            6653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.78  E-value=6.8e-20  Score=154.00  Aligned_cols=126  Identities=17%  Similarity=0.073  Sum_probs=106.7

Q ss_pred             cccCCCCCccCccc---cceeeeecccC-C---c-----------ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccc
Q psy633          171 SQESGSKENEGQTK---GWVNVSSMIND-E---S-----------QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ  232 (300)
Q Consensus       171 ~~~~~~~~~~a~~~---g~~~~~~~~~~-~---~-----------~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~  232 (300)
                      ...+.+++|.|+..   |+..+..++.+ .   +           ..+..|.||||+|+..+...++++|+. .|++++.
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~  118 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHL  118 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCc
Confidence            44567889999988   87633333322 1   1           123679999999999888888888888 7999999


Q ss_pred             cCcC-------------CchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHh--cCcHH-------HHH
Q psy633          233 LDEN-------------GLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKA--IEHTD-------LIE  288 (300)
Q Consensus       233 ~d~~-------------g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~--~g~~~-------iv~  288 (300)
                      .+..             |+||||+|+..|+.+++++|++.  .|+++|.+|..|+||||+|+.  .++.+       +++
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~  198 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD  198 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHH
Confidence            9886             99999999999999999999985  699999999999999999999  88888       999


Q ss_pred             HHHHcCCCC
Q psy633          289 YLVNSGAHS  297 (300)
Q Consensus       289 ~Ll~~ga~~  297 (300)
                      +|+++||++
T Consensus       199 ~Ll~~ga~~  207 (256)
T 2etb_A          199 GLLQMGARL  207 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHcCCCc
Confidence            999999987

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.78  E-value=2.1e-18  Score=150.92  Aligned_cols=101  Identities=25%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|.||||+|+..+...++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++..|..|.||||
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLH  129 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHH
Confidence            4456789999999999888888888888 799999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+..|+.+++++|+++|++++.
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcc
Confidence            99999999999999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=2.2e-20  Score=153.74  Aligned_cols=124  Identities=20%  Similarity=0.291  Sum_probs=96.0

Q ss_pred             CCCCccCcccccee-eeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633          175 GSKENEGQTKGWVN-VSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL  250 (300)
Q Consensus       175 ~~~~~~a~~~g~~~-~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  250 (300)
                      .+++|.|+..|... +..++..   .+..+..|.||||+|+..+...++++|+...|++++.+|..|+||||+|+..|+.
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~  153 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA  153 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCH
Confidence            45566666666652 2222222   3456788999999999988888999888823999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +++++|++ .|++++.+|..|.||||+|+..|+.++++.|++.|++.++
T Consensus       154 ~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          154 DIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            99999999 9999999999999999999999999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.78  E-value=6.7e-20  Score=156.82  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+....+     ++..   .+.+++|.|+..|+..+..+ +..   .+..+..|.||||+|+..+...
T Consensus        38 A~~~g~~~~v~~Ll~~g~~-----~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  109 (285)
T 3kea_A           38 AIADNNVRLVCTLLNAGAL-----KNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ  109 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTGG-----GSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHhCCCC-----CCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            5666777777777765433     1111   24566777777776633322 221   2344556677777776666666


Q ss_pred             HHHHHhhcCCCCccccCcCC-chHHHHHHH--------------------------------CCCHHHHHHHHhhcCCCc
Q psy633          218 LVKQLTKLKDFNINQLDENG-LNCLHWACD--------------------------------RGHLKVVQHLIEKCGADV  264 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g-~t~Lh~A~~--------------------------------~g~~~~v~~Ll~~~g~~~  264 (300)
                      ++++|.. .|++++..+..| .||||+|+.                                .|+.+++++|++ .|+++
T Consensus       110 ~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~  187 (285)
T 3kea_A          110 TVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD-YMTST  187 (285)
T ss_dssp             HHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH-HHHHT
T ss_pred             HHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH-cCCCC
Confidence            6666665 466666666655 455555554                                455555555555 45555


Q ss_pred             cccCCCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          265 NVTDSDGDYG-LDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       265 ~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +.+|..|+|| ||+|+..|+.+++++|+++||+++.
T Consensus       188 n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            5555555554 5555555555555555555555543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.78  E-value=1.1e-19  Score=152.95  Aligned_cols=126  Identities=19%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             ccCCCCCccCc---cccceeeeecccC---------------CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc
Q psy633          172 QESGSKENEGQ---TKGWVNVSSMIND---------------ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL  233 (300)
Q Consensus       172 ~~~~~~~~~a~---~~g~~~~~~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~  233 (300)
                      ..+.+++|.|+   ..|+..+...+.+               ....+..|.||||+|+..+...++++|+. .|++++..
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCcc
Confidence            45678899776   6677633333322               12334589999999999888888888888 89999999


Q ss_pred             C--------------cCCchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHhcCc---------HHHHH
Q psy633          234 D--------------ENGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH---------TDLIE  288 (300)
Q Consensus       234 d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~~g~---------~~iv~  288 (300)
                      +              ..|+||||+|+..|+.+++++|++.  .|++++.+|..|+||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              5799999999999999999999984  689999999999999999998887         79999


Q ss_pred             HHHHcCCCCC
Q psy633          289 YLVNSGAHSS  298 (300)
Q Consensus       289 ~Ll~~ga~~~  298 (300)
                      +|+++||+++
T Consensus       203 ~Ll~~ga~~~  212 (260)
T 3jxi_A          203 LLLIKCAKLF  212 (260)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHhCcccc
Confidence            9999999873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.78  E-value=1.5e-19  Score=159.73  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             cCcCcchHHHHHHhCC--HHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCC-----ccccCCCC
Q psy633          199 LDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-----VNVTDSDG  271 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~--~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~-----~~~~d~~g  271 (300)
                      .+..|.||||+|+..+  ...++++|+. .|++++..|..|+||||+|+..|+.+++++|++ .|++     +|.+|..|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g  211 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQG  211 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCC
Confidence            5567899999999888  7788888887 699999999999999999999999999999999 8988     99999999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          272 DYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       272 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +||||+|+..|+.++|++|+++||+++.
T Consensus       212 ~t~L~~A~~~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          212 NSHLHWAILINWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.78  E-value=4.2e-19  Score=150.73  Aligned_cols=151  Identities=18%  Similarity=0.251  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.++.++.|+....+     ++......+.+++|.|+..|...+... +..   .+..+..|.||||+|+..+...
T Consensus        12 A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   86 (285)
T 1wdy_A           12 AVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK   86 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            5566667777777655433     222333345566777777776533322 222   2344566777777777666566


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCcccc----------CCCCCcHHHHHHhcCcHHHH
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT----------DSDGDYGLDYAKAIEHTDLI  287 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~----------d~~g~TpL~~A~~~g~~~iv  287 (300)
                      ++++|.. .|++++..|..|+||||+|+..|+.+++++|++ .|++++..          +..|.||||+|+..|+.+++
T Consensus        87 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  164 (285)
T 1wdy_A           87 LLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHH-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHH-cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence            6666666 577777777777777777777777777777777 77777666          56677777777777777777


Q ss_pred             HHHHHc-CCCCCC
Q psy633          288 EYLVNS-GAHSSN  299 (300)
Q Consensus       288 ~~Ll~~-ga~~~~  299 (300)
                      ++|++. |++++.
T Consensus       165 ~~Ll~~~~~~~~~  177 (285)
T 1wdy_A          165 KILLDEMGADVNA  177 (285)
T ss_dssp             HHHHHTSCCCTTC
T ss_pred             HHHHHhcCCCCCc
Confidence            777765 766653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.77  E-value=2e-18  Score=148.12  Aligned_cols=99  Identities=28%  Similarity=0.413  Sum_probs=79.4

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      .+..+.|+|++|+..+...++++|+. .|++++..|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHH
Confidence            34567788888776444444444444 488888888888899999999999999999988 8888888888899999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +..|+.+++++|+++|++++.
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~~~  134 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHVGA  134 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHcCCHHHHHHHHhCCCCCCC
Confidence            999999999999988888764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.77  E-value=3.2e-19  Score=161.39  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|......     . ......+.++++.|+..|...+...+.+    .+..+..|.||||+|+..++..
T Consensus       186 A~~~~~~~~v~~Ll~~g~~-----~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  259 (437)
T 1n11_A          186 AVHHNNLDIVKLLLPRGGS-----P-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE  259 (437)
T ss_dssp             HHHTTCHHHHHHHGGGTCC-----S-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHhCCCC-----C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            4555566666666554332     0 1112234567888888887633333222    3456778899999999988888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|.. .+++++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++|++|+++|+++
T Consensus       260 ~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  337 (437)
T 1n11_A          260 MVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  337 (437)
T ss_dssp             HHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence            8888888 799999999999999999999999999999999 99999999999999999999999999999999999998


Q ss_pred             CC
Q psy633          298 SN  299 (300)
Q Consensus       298 ~~  299 (300)
                      +.
T Consensus       338 n~  339 (437)
T 1n11_A          338 NA  339 (437)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.77  E-value=1.3e-19  Score=153.89  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             cccCCCCCccCccc---cceeeee-cccCC--------------cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccc
Q psy633          171 SQESGSKENEGQTK---GWVNVSS-MINDE--------------SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ  232 (300)
Q Consensus       171 ~~~~~~~~~~a~~~---g~~~~~~-~~~~~--------------~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~  232 (300)
                      ...+.+++|.|+..   |+..+.. ++...              ...+..|.||||+|+..+...++++|+. .|++++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCc
Confidence            44667889998865   7663333 33221              1245689999999999888888888888 7999999


Q ss_pred             cCc--------------CCchHHHHHHHCCCHHHHHHHHhh--cCCCccccCCCCCcHHHHHHhcCc---------HHHH
Q psy633          233 LDE--------------NGLNCLHWACDRGHLKVVQHLIEK--CGADVNVTDSDGDYGLDYAKAIEH---------TDLI  287 (300)
Q Consensus       233 ~d~--------------~g~t~Lh~A~~~g~~~~v~~Ll~~--~g~~~~~~d~~g~TpL~~A~~~g~---------~~iv  287 (300)
                      .+.              .|+||||+|+..|+.+++++|++.  .|++++.+|..|+||||+|+..|+         .+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            987              799999999999999999999985  689999999999999999999998         8999


Q ss_pred             HHHHHcCCCCC
Q psy633          288 EYLVNSGAHSS  298 (300)
Q Consensus       288 ~~Ll~~ga~~~  298 (300)
                      ++|+++|++++
T Consensus       210 ~~Ll~~ga~~n  220 (273)
T 2pnn_A          210 NEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHhhhhcc
Confidence            99999999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.77  E-value=9.2e-20  Score=153.18  Aligned_cols=123  Identities=13%  Similarity=0.085  Sum_probs=103.0

Q ss_pred             cCCCCCccCccccceeeeec-ccC---CcccCcC-------------cchHHHHHHhCCHHHHHHHHhhc--CCCCcccc
Q psy633          173 ESGSKENEGQTKGWVNVSSM-IND---ESQLDDN-------------EKNIYEWAKEGKLDMLVKQLTKL--KDFNINQL  233 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~-------------~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~~  233 (300)
                      .+.+++|.|+..|+..+..+ +..   .+..+..             |.||||+|+..+...++++|+..  .|++++.+
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~  168 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT  168 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc
Confidence            46688999999888733333 322   2333333             99999999987777777777764  58999999


Q ss_pred             CcCCchHHHHHHH--CCCHH-------HHHHHHhhcCCCc-------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          234 DENGLNCLHWACD--RGHLK-------VVQHLIEKCGADV-------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       234 d~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~g~~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      |..|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       169 d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          169 DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            9999999999999  88988       9999999 99999       99999999999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=2.8e-20  Score=141.42  Aligned_cols=124  Identities=18%  Similarity=0.142  Sum_probs=100.6

Q ss_pred             ccCCCCCccCccccceee-eecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHC
Q psy633          172 QESGSKENEGQTKGWVNV-SSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR  247 (300)
Q Consensus       172 ~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~  247 (300)
                      ..+.+++|.|+..|...+ ..++..   .+..+..|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~   86 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKN   86 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHHHHHc
Confidence            345667888888777632 223322   34567889999999999888888888888 7999999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      |+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|.+.+...
T Consensus        87 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~  135 (137)
T 3c5r_A           87 GHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS  135 (137)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence            99999999999 99999999999999999999999999999998876653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.77  E-value=7.8e-20  Score=153.93  Aligned_cols=124  Identities=13%  Similarity=0.083  Sum_probs=103.3

Q ss_pred             cCCCCCccCccccceeeeecc-cC---CcccC--------------cCcchHHHHHHhCCHHHHHHHHhhc--CCCCccc
Q psy633          173 ESGSKENEGQTKGWVNVSSMI-ND---ESQLD--------------DNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQ  232 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~-~~---~~~~~--------------~~~~t~l~~a~~~~~~~v~~ll~~~--~~~~~~~  232 (300)
                      .+.+++|.|+..|+..+..++ ..   .+..+              ..|.||||+|+..+...++++|+..  .|++++.
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~  171 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR  171 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc
Confidence            566789999999987433333 22   23333              5799999999987777777777663  4899999


Q ss_pred             cCcCCchHHHHHHHCCC---------HHHHHHHHhhcCCCc-------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          233 LDENGLNCLHWACDRGH---------LKVVQHLIEKCGADV-------NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       233 ~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~g~~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      +|..|+||||+|+..|+         .+++++|++ .|+++       +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       172 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999998888         799999999 99999       77999999999999999999999999999876


Q ss_pred             C
Q psy633          297 S  297 (300)
Q Consensus       297 ~  297 (300)
                      .
T Consensus       251 ~  251 (260)
T 3jxi_A          251 D  251 (260)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.76  E-value=2.4e-19  Score=153.32  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             ccCCCCCccCccccceeee-ecccCC-cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          172 QESGSKENEGQTKGWVNVS-SMINDE-SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       172 ~~~~~~~~~a~~~g~~~~~-~~~~~~-~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      ..+.+++|.|+..|...+. .++... +....+|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..|+
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCC
Confidence            4566889999999987333 333332 2222358999999999888888888888 799999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCC-CcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDG-DYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      .+++++|++ .|++++.+|..| .||||+|+..|+.+++++|+++|+++.
T Consensus       108 ~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A          108 MQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             HHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            999999999 999999999999 799999999999999999999998863

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.76  E-value=1.2e-18  Score=144.66  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCH
Q psy633          140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~  215 (300)
                      ..++..+.++.++.++..... ...+++. ....+.++++.|+..|...+... +..   .+..+..|.||||+|+..+.
T Consensus        14 ~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   91 (241)
T 1k1a_A           14 HIAVVQGNLPAVHRLVNLFQQ-GGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS   91 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-TTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCCCc-ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            346788889999888752110 0011111 12345678999999998744333 322   34567789999999998777


Q ss_pred             HHHHHHHhhcCCC----CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHH
Q psy633          216 DMLVKQLTKLKDF----NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       216 ~~v~~ll~~~~~~----~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      ..++++|.. .+.    +++..+..|+||||+|+..|+.+++++|++ .|++++..+ ..|.||||+|+..|+.+++++|
T Consensus        92 ~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (241)
T 1k1a_A           92 PTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLL  169 (241)
T ss_dssp             HHHHHHHHH-HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHH-cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence            777777776 455    788899999999999999999999999999 999999999 8899999999999999999999


Q ss_pred             HHcCCCCCC
Q psy633          291 VNSGAHSSN  299 (300)
Q Consensus       291 l~~ga~~~~  299 (300)
                      +++|++++.
T Consensus       170 l~~g~~~~~  178 (241)
T 1k1a_A          170 LQHGANVNA  178 (241)
T ss_dssp             HHTTCCTTC
T ss_pred             HHcCCCCCC
Confidence            999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=150.38  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             cCcCcchHHHHHHhC---CHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          199 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~---~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      .+..|.||||+|+..   +...++++|+. .|++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.|||
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL  263 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETAL  263 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHH
Confidence            467899999999975   56667777777 699999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      |+|+..|+.+++++|+++|++..
T Consensus       264 ~~A~~~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          264 DIARKKHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCC
Confidence            99999999999999999988753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.76  E-value=3.4e-18  Score=149.46  Aligned_cols=147  Identities=18%  Similarity=0.150  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhhcCC-CchhhhhhhcccccccCCCCCccCcccc----ceeeeec-cc---CCcccCcCcchHHHHHH
Q psy633          141 SEAMSKYIALLNEVDAG-WEDKEQEEINWDESQESGSKENEGQTKG----WVNVSSM-IN---DESQLDDNEKNIYEWAK  211 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~~~~~-~~---~~~~~~~~~~t~l~~a~  211 (300)
                      .++..+++++++.|+.. ..+     ++..+ ..+.++++.++..+    ...+..+ +.   +.+..+..|.||||+|+
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad-----~n~~d-~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~  247 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGAD-----VNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  247 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCC-----TTCCC-TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhccCCC-----cCccC-CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            36778888888888642 222     11111 12233343322211    1122222 22   24567888999999998


Q ss_pred             hCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy633          212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV  291 (300)
Q Consensus       212 ~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  291 (300)
                      ..+...++++|....+++++.+|..|+||||+|+..|+.++|++||+ .|+++|.+     ||||+|+.+|+.++|++||
T Consensus       248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred             HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence            87766666666553689999999999999999999999999999999 99999764     5999999999999999999


Q ss_pred             HcCCCCCC
Q psy633          292 NSGAHSSN  299 (300)
Q Consensus       292 ~~ga~~~~  299 (300)
                      ++||++|.
T Consensus       322 ~~GA~~d~  329 (337)
T 4g8k_A          322 SHGAKEDF  329 (337)
T ss_dssp             HTTCCC--
T ss_pred             HCcCCCCC
Confidence            99999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=4.1e-19  Score=148.46  Aligned_cols=119  Identities=24%  Similarity=0.306  Sum_probs=98.9

Q ss_pred             CCCCccCcccccee-eeeccc--CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCH
Q psy633          175 GSKENEGQTKGWVN-VSSMIN--DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHL  250 (300)
Q Consensus       175 ~~~~~~a~~~g~~~-~~~~~~--~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~  250 (300)
                      .+++|.|+..|... +..++.  ..+..+..|.||||+|+..++..++++|+. .|++++..+ ..|+||||+|+..|+.
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t~L~~A~~~g~~  124 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRP  124 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            34566777777652 222332  235567889999999999888888888888 799999998 7799999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCCCCcHHHHHH----------------hcCcHHHHHHHHHcCC
Q psy633          251 KVVQHLIEKCGADVNVTDSDGDYGLDYAK----------------AIEHTDLIEYLVNSGA  295 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~----------------~~g~~~iv~~Ll~~ga  295 (300)
                      +++++|++ +|++++.+|..|+||||+|+                ..|+.+++++|++++.
T Consensus       125 ~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          125 EVVEALVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            99999999 99999999999999999998                6689999999998643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.75  E-value=8.4e-19  Score=145.18  Aligned_cols=123  Identities=22%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             CCCCCccCccccceeeeecc-cC---CcccCcCcchHHHHHH-hCCHHHHHHHHhhcCCCCccccCc-CCchHHHHHHHC
Q psy633          174 SGSKENEGQTKGWVNVSSMI-ND---ESQLDDNEKNIYEWAK-EGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDR  247 (300)
Q Consensus       174 ~~~~~~~a~~~g~~~~~~~~-~~---~~~~~~~~~t~l~~a~-~~~~~~v~~ll~~~~~~~~~~~d~-~g~t~Lh~A~~~  247 (300)
                      +.++++.|+..|...+...+ ..   .+..+..|.||||+|+ .++...+.++|.. .+++++..+. .|.||||+|+..
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~  187 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLA  187 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHc
Confidence            34556666666655222222 11   2344556667776666 3444555666666 5677766665 677777777777


Q ss_pred             CCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q psy633          248 GHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSS  298 (300)
Q Consensus       248 g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  298 (300)
                      |+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.|++..
T Consensus       188 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          188 GNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            77777777777 777777777777777777777777777777777766543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.74  E-value=1.4e-19  Score=145.03  Aligned_cols=121  Identities=13%  Similarity=0.068  Sum_probs=97.6

Q ss_pred             CccCccccce-eeeecccC-CcccC-cCcchHHHHHHhCCHH----HHHHHHhhcCCCCccccCcCCchHHHHHHHCCC-
Q psy633          178 ENEGQTKGWV-NVSSMIND-ESQLD-DNEKNIYEWAKEGKLD----MLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-  249 (300)
Q Consensus       178 ~~~a~~~g~~-~~~~~~~~-~~~~~-~~~~t~l~~a~~~~~~----~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-  249 (300)
                      ++.|+..|.. .+..++.. .+..+ ..|+||||+|+..+..    .++++|+. .|+++|.+|..|+||||+|+..|+ 
T Consensus        10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~~~~~   88 (186)
T 3t8k_A           10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQGGGN   88 (186)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCc
Confidence            5566666654 22222222 23334 6799999999987643    47888888 799999999999999999999987 


Q ss_pred             -----HHHHHHHHhhcCCCccccCCCCC-cHHHHHHhcC-----cHHHHHHHHH-cCCCCCCC
Q psy633          250 -----LKVVQHLIEKCGADVNVTDSDGD-YGLDYAKAIE-----HTDLIEYLVN-SGAHSSNT  300 (300)
Q Consensus       250 -----~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~ga~~~~~  300 (300)
                           .+++++||+ .|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|||++.+
T Consensus        89 ~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~  150 (186)
T 3t8k_A           89 DITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK  150 (186)
T ss_dssp             CHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred             chhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence                 688999999 9999999999999 9999999954     4679999999 99999863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.74  E-value=2.5e-18  Score=152.62  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=113.8

Q ss_pred             hcccccccCCCCCccCccccceeeeecc------------cCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc
Q psy633          166 INWDESQESGSKENEGQTKGWVNVSSMI------------NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL  233 (300)
Q Consensus       166 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~------------~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~  233 (300)
                      ++..+...+.+++|.|+..|+..+...+            ...+..+..|.||||+|+..+...++++|+. .|++++..
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~  195 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY  195 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCccc
Confidence            3444445677899999999987443332            1245678899999999999888888888888 79999999


Q ss_pred             CcCCchHHHHHHHCCCHHHHHHHHhhcC---CCccccCCCCCcHHHHHHhcC---cHHHHHHHHHcCCCCCC
Q psy633          234 DENGLNCLHWACDRGHLKVVQHLIEKCG---ADVNVTDSDGDYGLDYAKAIE---HTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       234 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g---~~~~~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~ga~~~~  299 (300)
                      |..|.||||+|+..|+.+++++|++ .+   ++++..|..|.||||+|+..+   +.+++++|+++|++++.
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTT-SHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHh-cCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            9999999999999999999999999 87   899999999999999999998   99999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.74  E-value=3e-18  Score=127.61  Aligned_cols=88  Identities=22%  Similarity=0.240  Sum_probs=78.4

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|.||||+|+..+...++++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~  111 (123)
T 3aaa_C           34 NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFE  111 (123)
T ss_dssp             TSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence            4456789999999999888888888888 799999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHH
Q psy633          277 YAKAIEHTDL  286 (300)
Q Consensus       277 ~A~~~g~~~i  286 (300)
                      +|+..+..++
T Consensus       112 ~A~~~~~~~l  121 (123)
T 3aaa_C          112 ATDNQAIKAL  121 (123)
T ss_dssp             HCCCHHHHHH
T ss_pred             HhCCHHHHHH
Confidence            9955444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.74  E-value=1.6e-17  Score=132.60  Aligned_cols=95  Identities=27%  Similarity=0.393  Sum_probs=83.8

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +..+..|.||||+|+..+...++++|.. .|++++..+ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus        70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl  147 (183)
T 3deo_A           70 DAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTAL  147 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH-cCCCCcCCCCCCCCHH
Confidence            4456789999999999887788888888 799999998 889999999999999999999999 9999999999999999


Q ss_pred             HHHHhc----------------CcHHHHHHHHHc
Q psy633          276 DYAKAI----------------EHTDLIEYLVNS  293 (300)
Q Consensus       276 ~~A~~~----------------g~~~iv~~Ll~~  293 (300)
                      |+|+..                |+.+++++|.++
T Consensus       148 ~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          148 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999876                566777777654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.74  E-value=1.8e-18  Score=143.15  Aligned_cols=151  Identities=19%  Similarity=0.252  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeec-ccC---CcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSM-IND---ESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~-~~~---~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      ++..+.+++++.|+.....     ........+.++++.|+..|...+... +..   .+..+..|.||||+|+..+...
T Consensus        49 A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  123 (240)
T 3eu9_A           49 AAINNRIDLVKYYISKGAI-----VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS  123 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHcCCc-----chhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence            5566677777777765443     222222335577888888887633333 322   3456778999999999988888


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCC-HHHHHHHHhhcCCCccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      +.++|.. .|++++..+..|.||||+|+..++ .+++++|+. .|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus       124 ~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  201 (240)
T 3eu9_A          124 IVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA  201 (240)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            8888888 799999999999999999997776 899999999 9999999997 99999999999999999999999999


Q ss_pred             CCCC
Q psy633          296 HSSN  299 (300)
Q Consensus       296 ~~~~  299 (300)
                      +++.
T Consensus       202 ~~~~  205 (240)
T 3eu9_A          202 NVDA  205 (240)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            9875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=2e-18  Score=152.38  Aligned_cols=117  Identities=19%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             CCccCccc-cce-eeeecccC---CcccC--cCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC
Q psy633          177 KENEGQTK-GWV-NVSSMIND---ESQLD--DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH  249 (300)
Q Consensus       177 ~~~~a~~~-g~~-~~~~~~~~---~~~~~--~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  249 (300)
                      +++.|+.. |.. .+..++..   .+..+  ..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|+
T Consensus       202 ~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~  280 (368)
T 3jue_A          202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGH  280 (368)
T ss_dssp             HHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCc
Confidence            46677776 665 33333332   23344  678999999999888888888888 799999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy633          250 LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA  295 (300)
Q Consensus       250 ~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  295 (300)
                      .+++++||+ .|++++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus       281 ~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          281 TGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999 999999999999999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.71  E-value=3.4e-17  Score=144.54  Aligned_cols=98  Identities=20%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CcCcchHHHHHHhC-CHHHHHHHHhhcCCCCccccC--cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          200 DDNEKNIYEWAKEG-KLDMLVKQLTKLKDFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       200 ~~~~~t~l~~a~~~-~~~~v~~ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      ...+.++||+|+.. +...++++|+. .|++++..+  ..|+||||+|+..|+.+++++||+ .|+++|.+|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHH
Confidence            34567899999876 65556666666 699999998  789999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+..|+.+++++|+++||+++.
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~  296 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGA  296 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCC
Confidence            99999999999999999999975

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.68  E-value=1.2e-16  Score=147.00  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=81.5

Q ss_pred             hHHHHHHh-CCHHHHHHHHhhcCCCCcccc------CcCCchHHHHHHH---CCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          205 NIYEWAKE-GKLDMLVKQLTKLKDFNINQL------DENGLNCLHWACD---RGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       205 t~l~~a~~-~~~~~v~~ll~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      +.||.|+. |+...+..+|..  |+++|..      |..|+||||+||.   .|+.+++++||+ .|+++|.+|..|+||
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCH
T ss_pred             HHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcH
Confidence            45666654 666666666655  8999887      8889999999976   999999999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          275 LDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      ||+|+..|+.++|++|+++||+++..
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~  236 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGTV  236 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.67  E-value=2.5e-16  Score=134.14  Aligned_cols=94  Identities=15%  Similarity=0.213  Sum_probs=81.0

Q ss_pred             chHHHHHHh-CCHHHHHHHHhhcCCCC------ccccCcCCchHHHHHHHC---CCHHHHHHHHhhcCCCccccCCCCCc
Q psy633          204 KNIYEWAKE-GKLDMLVKQLTKLKDFN------INQLDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDY  273 (300)
Q Consensus       204 ~t~l~~a~~-~~~~~v~~ll~~~~~~~------~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~g~~~~~~d~~g~T  273 (300)
                      .++|+.|+. ++...+..++..  |.+      ++..+..|+||||+|+..   |+.+++++|++ .|+++|.+|..|+|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCC
Confidence            456666655 677766666655  777      445588899999999999   89999999999 99999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          274 GLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       274 pL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |||+|+..|+.++|++|+++||+++.+
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~~  234 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEIA  234 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999863

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=135.57  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=82.0

Q ss_pred             chHHHHHH-hCCHHHHHHHHhhcCCCCccc------cCcCCchHHHHHHHC---CCHHHHHHHHhhcCCCccccCCCCCc
Q psy633          204 KNIYEWAK-EGKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDY  273 (300)
Q Consensus       204 ~t~l~~a~-~~~~~~v~~ll~~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~g~~~~~~d~~g~T  273 (300)
                      .++|+.|+ .++...+..+|.  .|.+++.      .+..|+||||+|+..   |+.+++++||+ .|+++|.+|..|+|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~T  228 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNT  228 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCC
T ss_pred             HHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCC
Confidence            34566665 466666666664  4899988      688999999999997   89999999999 99999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          274 GLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       274 pL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |||+|+..|+.+++++|+++||+++.+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~  255 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTV  255 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.66  E-value=2.1e-16  Score=111.58  Aligned_cols=63  Identities=40%  Similarity=0.616  Sum_probs=59.7

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~   63 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA   63 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            48999999999999999999999 9999999999999999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.66  E-value=1.1e-16  Score=139.59  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             cc-cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCC---HHHHHHHHhhcC-CCccccCCCC
Q psy633          197 SQ-LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCG-ADVNVTDSDG  271 (300)
Q Consensus       197 ~~-~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~g-~~~~~~d~~g  271 (300)
                      +. .+..|.||||+|+..+...++++|++ .|++++.+|..|+||||+|+..|+   .++++.|++ .+ ++++.+|..|
T Consensus       124 n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~-~~~~~~~~~d~~g  201 (327)
T 1sw6_A          124 NIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD-YLYPCLILEDSMN  201 (327)
T ss_dssp             CSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH-HHGGGGGEECTTC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH-hhhccccCCCCCC
Confidence            44 68899999999999888888888888 899999999999999999999999   788888888 55 7899999999


Q ss_pred             CcHHHHHHh----cCcHHHHHHHHHc
Q psy633          272 DYGLDYAKA----IEHTDLIEYLVNS  293 (300)
Q Consensus       272 ~TpL~~A~~----~g~~~iv~~Ll~~  293 (300)
                      +||||+|+.    .|+.+++++|++.
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHH
Confidence            999999999    8999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.64  E-value=3.7e-18  Score=151.18  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=51.4

Q ss_pred             cCcchHHHHHHhCCHHHHHHHHhhcCCCCc---cccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccc--cCCCCCcHH
Q psy633          201 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNI---NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV--TDSDGDYGL  275 (300)
Q Consensus       201 ~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~--~d~~g~TpL  275 (300)
                      ..+.||||+|+..++.+++++|.. .|+++   +..+.. +||||+||..|+.++|++|++ .|++++.  .|..|.|||
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~TpL  202 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYYAF  202 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCCHH
Confidence            345556666666555555555555 45431   112222 566666666666666666666 6666555  555566666


Q ss_pred             HHHH-hcCcHHHHHHHHHcC
Q psy633          276 DYAK-AIEHTDLIEYLVNSG  294 (300)
Q Consensus       276 ~~A~-~~g~~~iv~~Ll~~g  294 (300)
                      |+|+ ..|+.++|++|++.|
T Consensus       203 ~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          203 RWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHHCCCHHHHHHHHhCC
Confidence            6666 666666666666544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.59  E-value=2.5e-18  Score=152.27  Aligned_cols=144  Identities=13%  Similarity=0.127  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-CCc-----ccCcCcchHHHHHHhCCH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-DES-----QLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~~~-----~~~~~~~t~l~~a~~~~~  215 (300)
                      +|..+.+++++.|+....+...   .........++++.|+..|+..+..++. ...     ..+..+.||||+|+..++
T Consensus        99 Aa~~G~~e~v~~Ll~~ga~~~~---~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~  175 (376)
T 2aja_A           99 AAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH  175 (376)
T ss_dssp             HHHHCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCcHHH---HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCC
Confidence            7899999999999887542100   0001112234899999999985444443 331     222233899999999999


Q ss_pred             HHHHHHHhhcCCCCccc--cCcCCchHHHHHH-HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633          216 DMLVKQLTKLKDFNINQ--LDENGLNCLHWAC-DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       216 ~~v~~ll~~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  292 (300)
                      .+++++|.. .|++++.  .|..|+||||+|+ ..|+.++|++|++ .|+       .|.||||+|+..|+.+++++|++
T Consensus       176 ~eiv~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          176 LHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPV-------MLAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHH-------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCC-------ccchHHHHHHHCCCHHHHHHHHh
Confidence            999999998 7999887  8889999999999 9999999999999 774       28999999999999999999999


Q ss_pred             cCCCC
Q psy633          293 SGAHS  297 (300)
Q Consensus       293 ~ga~~  297 (300)
                      +|+++
T Consensus       247 ~ga~~  251 (376)
T 2aja_A          247 HVNRL  251 (376)
T ss_dssp             HHHHH
T ss_pred             cCccc
Confidence            98865

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.58  E-value=4.4e-15  Score=108.21  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=62.4

Q ss_pred             CccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       229 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .+...|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~   85 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA   85 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            345578889999999999999999999999 9999999999999999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.50  E-value=3.5e-15  Score=109.44  Aligned_cols=101  Identities=19%  Similarity=0.220  Sum_probs=81.4

Q ss_pred             cCCCCCccCccccceeeee-cccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCC
Q psy633          173 ESGSKENEGQTKGWVNVSS-MIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG  248 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~-~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  248 (300)
                      .+.+++|.|+..|...+.. ++..   .+..+..|.||||+|+..+...++++|+. .|++++..|..|+||||+|+..|
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHHHTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCC
Confidence            3455677777766652222 2222   34567789999999999888889999988 89999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          249 HLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       249 ~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +.+++++|++ .|+++|.++..|.||-
T Consensus        87 ~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             CHHHHHHHHH-cCCCCCcCCccccccc
Confidence            9999999999 9999999999999984

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.31  E-value=1.9e-12  Score=92.22  Aligned_cols=50  Identities=20%  Similarity=0.432  Sum_probs=47.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +|+|++|+.||++||||||+|.+.++|.+|++ +++..|+||+|.|..|+|
T Consensus        48 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            67899999999999999999999999999998 999999999999999876

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.29  E-value=1.6e-12  Score=90.98  Aligned_cols=53  Identities=21%  Similarity=0.377  Sum_probs=45.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.+++|+.||++||||||+|.+.+++.+|++ +++..++||+|.|..+.+...
T Consensus        32 ~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~   85 (90)
T 3p5t_L           32 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH   85 (90)
T ss_dssp             CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred             EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence            68899999999999999999999999999997 999999999999999987643

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=91.65  Aligned_cols=53  Identities=26%  Similarity=0.477  Sum_probs=47.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|+|++|+.||++||||||+|.+.++|.+|++ + ++..++||+|.|..|.|+..
T Consensus        31 ~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~   85 (91)
T 2lxi_A           31 EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK   85 (91)
T ss_dssp             BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred             EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence            57889999999999999999999999999998 5 45679999999999987643

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=91.79  Aligned_cols=50  Identities=22%  Similarity=0.430  Sum_probs=45.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCc----eecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSH----VLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~----~~~g~~~~v~~a~~   51 (300)
                      +|++++|+.||+|||||||+|.+.++|.+|++ +++.    .|+||+|.|..|+.
T Consensus        40 ~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            68899999999999999999999999999998 7764    69999999998863

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.28  E-value=3.4e-12  Score=92.67  Aligned_cols=51  Identities=12%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|++|+.||++||||||+|.+.++|++|++ +++..++||+|.|..+..+
T Consensus        35 ~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A           35 EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            68899999999999999999999999999998 9999999999999998644

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.26  E-value=6.7e-12  Score=100.73  Aligned_cols=95  Identities=22%  Similarity=0.373  Sum_probs=74.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|++.+++.++|+.|.|..+.++.........                 ...
T Consensus        42 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~-----------------~~~  104 (196)
T 1l3k_A           42 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAH-----------------LTV  104 (196)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC----------------------------CC
T ss_pred             EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccC-----------------CCc
Confidence            688999999999999999999999999999999999999999999998765432211100                 001


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      .+.||++++..++++++.++|..|+.+.....
T Consensus       105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i  136 (196)
T 1l3k_A          105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI  136 (196)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence            22389999999999999999999998765444

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.25  E-value=1e-11  Score=101.25  Aligned_cols=91  Identities=20%  Similarity=0.292  Sum_probs=76.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|+|++|+.||++||||||+|.+.+++.+|++ +++..+.|+.+++..+.+........  ...                
T Consensus        44 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~--~~~----------------  105 (213)
T 4f02_A           44 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG--VGN----------------  105 (213)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHC--TTE----------------
T ss_pred             EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccc--ccc----------------
Confidence            68999999999999999999999999999998 89999999999998886554322111  112                


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                         .||++++..++++++.++|..|+.+....+
T Consensus       106 ---l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i  135 (213)
T 4f02_A          106 ---IFIKNLDKSIDNKALYDTFSAFGNILSCKV  135 (213)
T ss_dssp             ---EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             ---ceECCcccccHHHHHHHHHhhcCCeEEEEe
Confidence               289999999999999999999998765544

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.25  E-value=2.2e-12  Score=92.08  Aligned_cols=51  Identities=25%  Similarity=0.322  Sum_probs=48.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC-ccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG-SRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g-~~~~v~~a~~~   52 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ +++..++| |+|.|..|.++
T Consensus        41 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~   93 (100)
T 3ns6_A           41 NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV   93 (100)
T ss_dssp             EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred             EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence            68899999999999999999999999999998 99999999 99999998654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.23  E-value=2.2e-11  Score=94.96  Aligned_cols=89  Identities=18%  Similarity=0.389  Sum_probs=75.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      ++.++.|+.+|++||||||+|.+++++.+|++ +++..++|+++.|..+.+......    ...                
T Consensus        31 ~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~----~~~----------------   90 (167)
T 1fxl_A           31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR----DAN----------------   90 (167)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGT----TCE----------------
T ss_pred             EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCC----CCc----------------
Confidence            57899999999999999999999999999998 899999999999999876643221    112                


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                         .++++++..++++++.++|..|+.+.....
T Consensus        91 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i  120 (167)
T 1fxl_A           91 ---LYVSGLPKTMTQKELEQLFSQYGRIITSRI  120 (167)
T ss_dssp             ---EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             ---EEECCCCCcCCHHHHHHHHHhcCCEeEEEE
Confidence               289999999999999999999997765443

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.22  E-value=1.4e-11  Score=96.24  Aligned_cols=89  Identities=18%  Similarity=0.348  Sum_probs=75.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      ++.++.|+.||++||||||+|.+++++.+|++ +++..++|++|.|..+.++.....    ...                
T Consensus        32 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~----~~~----------------   91 (168)
T 1b7f_A           32 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK----DTN----------------   91 (168)
T ss_dssp             EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTT----TCE----------------
T ss_pred             EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCC----CCC----------------
Confidence            57889999999999999999999999999998 999999999999999876643211    112                


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                         .++++++..++++++.++|..|+.+.....
T Consensus        92 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i  121 (168)
T 1b7f_A           92 ---LYVTNLPRTITDDQLDTIFGKYGSIVQKNI  121 (168)
T ss_dssp             ---EEEESCCTTCCHHHHHHHHTSSSCEEEEEE
T ss_pred             ---EEEeCCCCCCCHHHHHHhhhcCCcEEEEEE
Confidence               289999999999999999999997765443

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.19  E-value=2.2e-11  Score=83.61  Aligned_cols=52  Identities=29%  Similarity=0.560  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.+++|+.||++||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus        30 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   82 (83)
T 3md1_A           30 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE   82 (83)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence            57899999999999999999999999999999 89999999999999998764

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.19  E-value=2.1e-11  Score=95.19  Aligned_cols=89  Identities=22%  Similarity=0.414  Sum_probs=73.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      +|.+++|+.||++||||||+|.+++++.+|++ .++.++|+.|.|..+.++....    ...                  
T Consensus        32 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~~~~~----~~~------------------   88 (167)
T 2cjk_A           32 DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQD----KTG------------------   88 (167)
T ss_dssp             EEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCCHHHHH----HCE------------------
T ss_pred             EEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccchhhcc----CCC------------------
Confidence            57889999999999999999999999999998 4689999999998887643211    111                  


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                       ..||++++..++++++.++|..|+.+......
T Consensus        89 -~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~  120 (167)
T 2cjk_A           89 -KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM  120 (167)
T ss_dssp             -EEEEEEECTTCCHHHHHHHHHTTSCCSEEECC
T ss_pred             -eEEECCCCCCCCHHHHHHHHHhCccEEEEEEE
Confidence             23899999999999999999999987655443

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.18  E-value=1.6e-11  Score=82.62  Aligned_cols=48  Identities=35%  Similarity=0.641  Sum_probs=45.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.++.|+.||++||||||+|.+++++++|++++++.++|++|.|+.|
T Consensus        28 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            578899999999999999999999999999999999999999999875

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.18  E-value=1.5e-11  Score=95.01  Aligned_cols=52  Identities=23%  Similarity=0.480  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ ++++.|+||.|.|..|.++.
T Consensus        86 ~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~  138 (156)
T 3n9u_C           86 ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQN  138 (156)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence            68899999999999999999999999999999 89999999999999997654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.5e-11  Score=88.98  Aligned_cols=51  Identities=14%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      .+|.|++|+. |++||||||+|.+++++++|+.++++.|+||.|+|..+.++
T Consensus        43 ~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~   93 (109)
T 2dnn_A           43 DAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER   93 (109)
T ss_dssp             CEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred             eEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence            3689999976 99999999999999999999999999999999999888654

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=3.1e-11  Score=85.86  Aligned_cols=53  Identities=23%  Similarity=0.617  Sum_probs=49.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||++||||||+|.+.+++.+|++++++.|+|+.|.|..+.++..
T Consensus        39 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~   91 (99)
T 2dgs_A           39 EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS   91 (99)
T ss_dssp             EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred             EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence            67899999999999999999999999999999999999999999999987754

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.16  E-value=4.5e-11  Score=97.38  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=74.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|.+++|+.+|++||||||+|.+.+++.+|++ +++..++|+.|.|..+..+..........      .      ...-.
T Consensus        57 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~------~------~~~~~  124 (216)
T 2qfj_A           57 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL------A------EEARA  124 (216)
T ss_dssp             EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH------H------HHHTT
T ss_pred             EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh------h------cccCC
Confidence            57899999999999999999999999999999 99999999999998887654321110000      0      00111


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      ..+.||++++..++++++.++|..|+.+.....
T Consensus       125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i  157 (216)
T 2qfj_A          125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL  157 (216)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence            233489999999999999999999997765544

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.16  E-value=2.4e-11  Score=88.97  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=45.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|+|++|+  +++||||||+|.+.++|++|++ ++++.|+||+|.|..+.++..
T Consensus        34 ~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~   85 (115)
T 4f25_A           34 SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE   85 (115)
T ss_dssp             EEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred             EEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence            67899996  4589999999999999999998 999999999999999887643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.16  E-value=3.4e-11  Score=86.37  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=49.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||++||||||+|.+.+++.+|+.+++..|+|++|.|..+.++..
T Consensus        43 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dng_A           43 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ   95 (103)
T ss_dssp             EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred             EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence            68899999999999999999999999999999999999999999999987654

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.15  E-value=3.8e-11  Score=87.05  Aligned_cols=54  Identities=35%  Similarity=0.517  Sum_probs=49.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|++|+.||++||||||+|.+.+++.+|++..++.++|+.|.|..+.++...
T Consensus        54 ~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~~  107 (109)
T 2rs2_A           54 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ  107 (109)
T ss_dssp             EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCCC
T ss_pred             EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCCC
Confidence            688999999999999999999999999999996569999999999999887643

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.15  E-value=2.3e-11  Score=87.00  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+ +|++||||||+|.+++++++|++++++.|+||.|+|..+.+..
T Consensus        43 ~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~   93 (102)
T 1wez_A           43 RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence            68899998 9999999999999999999999999999999999998887554

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.14  E-value=1.7e-11  Score=96.59  Aligned_cols=86  Identities=15%  Similarity=0.298  Sum_probs=71.9

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhh
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACD   84 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~   84 (300)
                      ++.|+.+|++||||||+|.++++|.+|+++++..+.|++|.|..+.++......  ....                   .
T Consensus        44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~--~~~~-------------------l  102 (175)
T 1fje_B           44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR--AART-------------------L  102 (175)
T ss_dssp             CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTG--GGGE-------------------E
T ss_pred             EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccc--cCCE-------------------E
Confidence            467778999999999999999999999999999999999999999876432211  1122                   3


Q ss_pred             hhcccccCCChHHHHHHHHhhcccccc
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVG  111 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g  111 (300)
                      ||++++..++++++.++|..|+.+...
T Consensus       103 ~v~nlp~~~t~~~l~~~F~~~g~v~~~  129 (175)
T 1fje_B          103 LAKNLSFNITEDELKEVFEDALEIRLV  129 (175)
T ss_dssp             EEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence            899999999999999999999877654

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.14  E-value=3.9e-11  Score=83.13  Aligned_cols=51  Identities=31%  Similarity=0.473  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.++.|+.+|++||||||+|.+.++|.+|++ ++++.++|+.|.|..+.++
T Consensus        35 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k   86 (87)
T 3bs9_A           35 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   86 (87)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence            67899999999999999999999999999999 8999999999999998765

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.9e-11  Score=85.33  Aligned_cols=53  Identities=26%  Similarity=0.547  Sum_probs=49.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.|+.+|++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus        41 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   94 (102)
T 2fc8_A           41 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE   94 (102)
T ss_dssp             EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred             EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence            68899999999999999999999999999998 999999999999999987754

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.13  E-value=5e-11  Score=84.25  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=49.3

Q ss_pred             eE-EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~-~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++ .|++|+.+|++||||||+|.+.++|.+|++ ++++.++|++|.|..+.++..
T Consensus        34 ~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   88 (96)
T 1x5t_A           34 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS   88 (96)
T ss_dssp             SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred             EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence            45 899999999999999999999999999999 999999999999999987654

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.12  E-value=5.5e-11  Score=84.76  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=48.3

Q ss_pred             eEEEeeeC-CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+ .+|++||||||+|.+.+++.+|+.+++..|+|+.|.|..+.++.
T Consensus        47 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~   99 (100)
T 2j76_E           47 AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ   99 (100)
T ss_dssp             EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred             EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence            57889998 69999999999999999999999999999999999999998764

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.12  E-value=6.8e-11  Score=83.60  Aligned_cols=53  Identities=28%  Similarity=0.426  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|+.|+.||++||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus        31 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   84 (96)
T 2x1f_A           31 NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI   84 (96)
T ss_dssp             EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred             EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence            57889999999999999999999999999998 999999999999999987754

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.12  E-value=5.8e-11  Score=82.29  Aligned_cols=48  Identities=33%  Similarity=0.704  Sum_probs=45.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.+++|+.||++||||||+|.+.+++.+|++++++.++|++|.|+.|
T Consensus        40 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           40 DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            578999999999999999999999999999998889999999999765

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=9.4e-11  Score=82.64  Aligned_cols=53  Identities=28%  Similarity=0.523  Sum_probs=49.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.|+.||++||||||+|.+.+++.+|++ ++++.++|++|.|..+.++..
T Consensus        34 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           34 NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD   87 (95)
T ss_dssp             EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred             EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence            57899999999999999999999999999999 999999999999999987654

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.11  E-value=6.5e-11  Score=82.60  Aligned_cols=52  Identities=27%  Similarity=0.570  Sum_probs=45.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.+++|+.||++||||||+|.+.+ +.+|+. +++..++|++|.|..|.++..
T Consensus        30 ~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~   82 (90)
T 2ki2_A           30 NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS   82 (90)
T ss_dssp             EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred             EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            6889999999999999999999999 999998 899999999999999987643

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.11  E-value=3.7e-11  Score=80.77  Aligned_cols=48  Identities=27%  Similarity=0.481  Sum_probs=44.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.+++|+.||++||||||+|.+++++.+|++++++.++|++|.|+.|
T Consensus        28 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           28 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred             EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            577889999999999999999999999999999999999999998764

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=2.7e-11  Score=86.77  Aligned_cols=48  Identities=25%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|++|+. |++||||||+|.++++|.+|+.++++.++|+.|.|..+.
T Consensus        40 ~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           40 NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD   87 (103)
T ss_dssp             EEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred             EEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence            688999987 999999999999999999999999999999999998754

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=90.65  Aligned_cols=52  Identities=19%  Similarity=0.462  Sum_probs=48.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCc----eecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSH----VLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~----~~~g~~~~v~~a~~~~~   54 (300)
                      +|+|++|+.||++||||||+|.+. ++.+|+. +++.    .++||+|.|+.+.++..
T Consensus        54 ~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~  110 (131)
T 2m2b_A           54 NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR  110 (131)
T ss_dssp             TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred             eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence            389999999999999999999999 9999998 9999    99999999999987643

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.10  E-value=9e-11  Score=85.89  Aligned_cols=54  Identities=33%  Similarity=0.519  Sum_probs=50.1

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .+|.|++|+.+|++||||||+|.+.+++.+|++ +++..|+|++|.|..+.++..
T Consensus        53 ~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~  107 (115)
T 2cpz_A           53 VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND  107 (115)
T ss_dssp             SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred             EEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence            368899999999999999999999999999997 899999999999999987754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=6.9e-11  Score=82.66  Aligned_cols=52  Identities=19%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .+|.|++| .+|++||||||+|.+.+++.+|+.+++..|+||.|.|..+.++.
T Consensus        37 ~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~   88 (91)
T 2dgw_A           37 VAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP   88 (91)
T ss_dssp             SEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred             eEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence            36889999 89999999999999999999999999999999999999987763

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=7.8e-11  Score=84.72  Aligned_cols=54  Identities=33%  Similarity=0.656  Sum_probs=50.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|+.|+.||++||||||+|.+.+++.+|+..+++.|+|+.|.|..+.++...
T Consensus        45 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~   98 (105)
T 2dh8_A           45 DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ   98 (105)
T ss_dssp             EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred             EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence            678999999999999999999999999999998999999999999999887643

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.09  E-value=9.8e-11  Score=84.67  Aligned_cols=52  Identities=29%  Similarity=0.575  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.+++|+.+|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus        55 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~  107 (108)
T 2jrs_A           55 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT  107 (108)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred             EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence            57899999999999999999999999999998 99999999999999998764

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.09  E-value=1.3e-10  Score=80.90  Aligned_cols=51  Identities=25%  Similarity=0.629  Sum_probs=47.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.++.|+.||++||||||+|.+.+++.+|+.++++.++|++|.|..+.++
T Consensus        35 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~   85 (89)
T 3ucg_A           35 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN   85 (89)
T ss_dssp             EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred             EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence            578999999999999999999999999999999999999999999998764

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.09  E-value=8.1e-11  Score=100.15  Aligned_cols=93  Identities=18%  Similarity=0.250  Sum_probs=75.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      ++.+++|+.||++||||||+|.+.+++.+|+. +++..++|++|.|..+.++...... .....                
T Consensus       124 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~-~~~~~----------------  186 (284)
T 3smz_A          124 RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPAL-LHSRC----------------  186 (284)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTT-TSCSE----------------
T ss_pred             EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCccc-CCccE----------------
Confidence            57889999999999999999999999999996 9999999999999998765432211 11112                


Q ss_pred             HHhhhhcccccCC-ChHHHHHHHHhhcccccccCC
Q psy633           81 QACDYLPSLVKKL-DSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        81 ~a~~~v~~~~~~~-~~~~~~~~~~~~k~~~~g~~~  114 (300)
                         .||++++..+ +++++.++|..|+.+......
T Consensus       187 ---l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~  218 (284)
T 3smz_A          187 ---LCVDRLPPGFNDVDALCRALSAVHSPTFCQLA  218 (284)
T ss_dssp             ---EEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred             ---EEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence               3899999996 999999999999987655443

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.09  E-value=1e-10  Score=83.20  Aligned_cols=53  Identities=32%  Similarity=0.463  Sum_probs=49.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.+|++||||||+|.+.+++.+|++ ++++.++|++|.|..+.++..
T Consensus        37 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (99)
T 1whw_A           37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred             EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence            57889999999999999999999999999996 999999999999999987754

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.09  E-value=1.2e-10  Score=85.33  Aligned_cols=53  Identities=28%  Similarity=0.504  Sum_probs=49.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||++||||||+|.+.+++.+|++.+++.|+|+.|.|..+.++..
T Consensus        56 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~  108 (116)
T 1x4b_A           56 DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE  108 (116)
T ss_dssp             EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCC
T ss_pred             EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCcc
Confidence            68899999999999999999999999999999999999999999999988754

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.09  E-value=1e-10  Score=83.80  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=49.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.+|++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus        44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   97 (103)
T 2cq0_A           44 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN   97 (103)
T ss_dssp             EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred             EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence            67899999999999999999999999999999 999999999999999987654

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.09  E-value=9.6e-11  Score=84.06  Aligned_cols=54  Identities=22%  Similarity=0.531  Sum_probs=50.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      ++.++.|+.+|++||||||+|.+.+++.+|++ +++..++|+.|.|..+.++...
T Consensus        37 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   91 (104)
T 1p1t_A           37 SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK   91 (104)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred             EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence            68899999999999999999999999999998 9999999999999999876543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.09  E-value=3e-11  Score=89.44  Aligned_cols=50  Identities=18%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|++|+. |++||||||+|.+++++++|+++++..|+||.|+|..+.++
T Consensus        72 ~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~  121 (126)
T 2hgm_A           72 GITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE  121 (126)
T ss_dssp             EEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred             EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence            688999987 99999999999999999999998889999999999887543

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.08  E-value=1.1e-10  Score=85.22  Aligned_cols=53  Identities=21%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .|.|++|+.||++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++..
T Consensus        52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence            48899999999999999999999999999999 899999999999999987654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.08  E-value=6.5e-11  Score=84.66  Aligned_cols=53  Identities=19%  Similarity=0.336  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus        41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   94 (102)
T 2cqb_A           41 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI   94 (102)
T ss_dssp             CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence            67899999999999999999999999999998 899999999999999987654

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=82.95  Aligned_cols=48  Identities=19%  Similarity=0.332  Sum_probs=45.6

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +.+++|+.||++||||||+|.+.+++.+|++ +++..++|+.|.|..|+
T Consensus        51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~   99 (99)
T 2la6_A           51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT   99 (99)
T ss_dssp             EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence            8899999999999999999999999999998 99999999999998763

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.08  E-value=9.8e-11  Score=84.05  Aligned_cols=53  Identities=17%  Similarity=0.364  Sum_probs=49.4

Q ss_pred             eEEEeeeCCC-CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t-~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.| |++||||||+|.+.+++.+|+.++++.|+|+.|.|..+.++..
T Consensus        43 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~   96 (104)
T 1wi8_A           43 AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD   96 (104)
T ss_dssp             EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred             EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCC
Confidence            6789999998 9999999999999999999999999999999999999987654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.07  E-value=1.2e-10  Score=83.78  Aligned_cols=53  Identities=30%  Similarity=0.515  Sum_probs=49.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.+|++||||||+|.+.+++.+|++ ++++.|+|++|.|..+.++..
T Consensus        44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   97 (105)
T 1x5u_A           44 NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK   97 (105)
T ss_dssp             EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred             EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence            57889999999999999999999999999999 899999999999999987643

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.07  E-value=1.9e-10  Score=85.89  Aligned_cols=52  Identities=25%  Similarity=0.516  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+.||++||||||+|.+.++|++|++ +++..|+|++|.|..+.++.
T Consensus        75 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~  127 (129)
T 2kxn_B           75 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR  127 (129)
T ss_dssp             EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence            67899999999999999999999999999999 99999999999999998764

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.07  E-value=1.3e-10  Score=84.45  Aligned_cols=53  Identities=25%  Similarity=0.431  Sum_probs=49.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC------CceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD------SHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~------~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ ++      ++.|+|+.|.|..+.++..
T Consensus        44 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~  103 (111)
T 1x4h_A           44 YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE  103 (111)
T ss_dssp             EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred             EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence            57899999999999999999999999999998 88      9999999999999987754

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.07  E-value=9.8e-11  Score=84.35  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=48.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|++ ++++.++|+.|.|..|.++.
T Consensus        52 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~  104 (106)
T 1p27_B           52 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG  104 (106)
T ss_dssp             EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred             EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence            67899999999999999999999999999998 89999999999999987653

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.9e-10  Score=89.52  Aligned_cols=90  Identities=16%  Similarity=0.269  Sum_probs=72.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      ++.++.|+ +|+++|||||+|.+.+++.+|++ +++..+.|+.+.|..+.++......  ....                
T Consensus        29 ~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~--~~~~----------------   89 (166)
T 3md3_A           29 NIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSD--DTFN----------------   89 (166)
T ss_dssp             EEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCT--TCEE----------------
T ss_pred             EEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCC--CCce----------------
Confidence            57888896 58899999999999999999996 9999999999999998765432111  1112                


Q ss_pred             HHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           81 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        81 ~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                         .++++++..++++++.++|..|+.+.....
T Consensus        90 ---l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i  119 (166)
T 3md3_A           90 ---LFVGDLNVNVDDETLRNAFKDFPSYLSGHV  119 (166)
T ss_dssp             ---EEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred             ---EEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence               289999999999999999999998765544

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.6e-10  Score=82.90  Aligned_cols=53  Identities=26%  Similarity=0.522  Sum_probs=48.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCce-ecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHV-LEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~-~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|++|+ +|++||||||+|.+.++|.+|++ +++.. ++|++|.|..+.++...
T Consensus        39 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~   93 (104)
T 2dhg_A           39 GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR   93 (104)
T ss_dssp             EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred             EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence            67899998 99999999999999999999999 99999 99999999999876543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.07  E-value=5e-11  Score=87.13  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+ ||++||||||+|.+.+++.+|++++++.|+||.|.|..+.++.
T Consensus        45 ~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           45 AVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             TEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred             eEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence            48999998 9999999999999999999999999999999999999987654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.07  E-value=1.5e-10  Score=84.75  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=50.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|++|+.+|++||||||+|.+.++|++|++ ++++.|+|+.|.|..+.++...
T Consensus        44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   98 (115)
T 2dgo_A           44 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA   98 (115)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred             EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence            57899999999999999999999999999998 9999999999999999877543

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.06  E-value=4.7e-11  Score=89.81  Aligned_cols=50  Identities=14%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++
T Consensus        76 ~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~  125 (136)
T 2hgl_A           76 GVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT  125 (136)
T ss_dssp             TEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred             EEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence            688999987 99999999999999999999999999999999999998644

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.06  E-value=1.3e-10  Score=83.44  Aligned_cols=50  Identities=10%  Similarity=0.013  Sum_probs=45.7

Q ss_pred             eEEEeeeCCC-CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t-~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +|.|++|+.+ +++||||||+|.++++|.+|++ |+|..++||+|.|..+.+
T Consensus        42 ~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           42 KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL   93 (105)
T ss_dssp             EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence            6789999764 7999999999999999999998 999999999999998853

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.06  E-value=1.4e-10  Score=79.96  Aligned_cols=49  Identities=20%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      ++.+++|+.+|++||||||+|.+.+++.+|++ +++..++|++|.|..|+
T Consensus        36 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           36 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            57889999999999999999999999999997 99999999999998763

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.05  E-value=1.1e-10  Score=83.39  Aligned_cols=53  Identities=25%  Similarity=0.532  Sum_probs=49.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|+.|+.++++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus        41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           41 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            68899999999999999999999999999997 999999999999999876654

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.05  E-value=6.9e-11  Score=85.33  Aligned_cols=51  Identities=8%  Similarity=0.304  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+. |++||||||+|.+.+++.+|++++++.++||.|+|..+.++.
T Consensus        43 ~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~   93 (107)
T 2lmi_A           43 GIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED   93 (107)
T ss_dssp             TEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHH
T ss_pred             eEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHH
Confidence            578999987 999999999999999999999999999999999999987543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=83.83  Aligned_cols=52  Identities=21%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|++ ++++.|+|+.|.|..+.++.
T Consensus        42 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2dnm_A           42 DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR   94 (103)
T ss_dssp             EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred             EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence            57889999999999999999999999999999 99999999999999998654

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.7e-10  Score=82.12  Aligned_cols=52  Identities=17%  Similarity=0.388  Sum_probs=48.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|+.|+ +|++||||||+|.+.++|.+|++ +++..++|++|.|..+.++..
T Consensus        46 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   98 (100)
T 2do4_A           46 DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS   98 (100)
T ss_dssp             EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred             EEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            57899998 99999999999999999999997 899999999999999987653

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.2e-10  Score=81.40  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=48.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCcc----ceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSR----LSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~----~~v~~a~~~   52 (300)
                      ++.|++|+.||++||||||+|.+.+++++|++ +++..++|+.    |+|..|.+.
T Consensus        39 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           39 SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred             EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence            78999999999999999999999999999999 9999999999    999988765

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.04  E-value=2.2e-10  Score=80.68  Aligned_cols=50  Identities=26%  Similarity=0.562  Sum_probs=47.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      ++.+++|+.||++||||||+|.+.+++.+|++ +++..++|++|.|..|.+
T Consensus        44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           44 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS   94 (95)
T ss_dssp             EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred             EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence            57899999999999999999999999999999 899999999999998864

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.04  E-value=1.5e-10  Score=84.00  Aligned_cols=52  Identities=17%  Similarity=0.330  Sum_probs=48.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.++.|+.||++||||||+|.+.+++.+|+. +++..|+|++|.|..+.++.
T Consensus        55 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  107 (110)
T 1oo0_B           55 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG  107 (110)
T ss_dssp             EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred             EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence            57889999999999999999999999999999 99999999999999987654

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.03  E-value=1.7e-10  Score=77.91  Aligned_cols=47  Identities=38%  Similarity=0.596  Sum_probs=44.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      ++.++.|+.||++||||||+|.+++++.+|++ ++ +.++|++|.|+.|
T Consensus        29 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A           29 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            57899999999999999999999999999999 66 9999999999876

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.03  E-value=2.4e-10  Score=82.31  Aligned_cols=54  Identities=26%  Similarity=0.432  Sum_probs=49.2

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee---cCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL---EGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~---~g~~~~v~~a~~~~~   54 (300)
                      .+|.|+.|+.||++||||||+|.+.++|.+|++ +++..+   .|++|.|..+.++..
T Consensus        41 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~   98 (106)
T 2dgp_A           41 YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR   98 (106)
T ss_dssp             CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred             eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence            368899999999999999999999999999998 999887   899999999987654

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.6e-10  Score=80.18  Aligned_cols=49  Identities=24%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      ++.++.|+.+|++||||||+|.+.+++.+|++ +++..|+|++|.|..|+
T Consensus        45 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           45 KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence            57899999999999999999999999999997 99999999999998763

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.03  E-value=1.5e-10  Score=82.04  Aligned_cols=51  Identities=8%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.++.|+.+|++||||||+|.+.+++++|++ +++..|+|++|.|..+..+
T Consensus        44 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (98)
T 2cqp_A           44 GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP   95 (98)
T ss_dssp             TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred             ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence            35688999999999999999999999999997 9999999999999998754

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.03  E-value=3e-10  Score=83.20  Aligned_cols=53  Identities=21%  Similarity=0.426  Sum_probs=48.6

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .+|.|+.|+ ||++||||||+|.+.++|++|++ +++..|+|+.|.|..+.++..
T Consensus        35 ~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   88 (116)
T 2fy1_A           35 SEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF   88 (116)
T ss_dssp             SEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred             EEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            368899998 99999999999999999999998 999999999999999987653

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.03  E-value=2e-10  Score=82.40  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +.|++| .||++||||||+|.+++++.+|+..+++.|+||.|+|..+.++.
T Consensus        46 v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~   95 (104)
T 1wg5_A           46 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred             EEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence            677888 89999999999999999999999999999999999998886553

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.02  E-value=3.3e-10  Score=81.12  Aligned_cols=52  Identities=38%  Similarity=0.534  Sum_probs=48.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||++||||||+|.+.+++.+|+. +++.|+|+.|.|..+.++..
T Consensus        44 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~~   95 (103)
T 2cqg_A           44 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQS   95 (103)
T ss_dssp             EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTCC
T ss_pred             EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCCc
Confidence            57899999999999999999999999999998 57899999999999987754

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.02  E-value=9.3e-11  Score=86.22  Aligned_cols=50  Identities=14%  Similarity=0.332  Sum_probs=46.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|+|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++
T Consensus        49 ~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~   98 (118)
T 2db1_A           49 GVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT   98 (118)
T ss_dssp             GEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred             eEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence            578999987 99999999999999999999999999999999999888644

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.02  E-value=2.6e-10  Score=82.50  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             eEEEe-eeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633            2 NASVM-FDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~-~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++ .|+.||++||||||+|.+.+++.+|++ ++  +..++|++|.|..|.++..
T Consensus        38 ~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~   94 (109)
T 2dis_A           38 DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID   94 (109)
T ss_dssp             EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred             EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence            46677 899999999999999999999999999 75  5899999999999987754

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.01  E-value=3.4e-10  Score=83.93  Aligned_cols=52  Identities=23%  Similarity=0.582  Sum_probs=48.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+.+|++||||||+|.+.+++.+|++++++.|+|+.|.|..+.+..
T Consensus        65 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~  116 (124)
T 2jwn_A           65 RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM  116 (124)
T ss_dssp             EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred             EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence            5789999999999999999999999999999999999999999999987654

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.01  E-value=2.3e-10  Score=80.63  Aligned_cols=50  Identities=10%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      ++.++.|+.+|++||||||+|.+++++.+|++ ++++.|+||+|.|..+.+
T Consensus        44 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s   94 (95)
T 2ek1_A           44 GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS   94 (95)
T ss_dssp             TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred             ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence            36788999999999999999999999999998 899999999999998753

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.01  E-value=2.5e-10  Score=80.93  Aligned_cols=53  Identities=28%  Similarity=0.545  Sum_probs=48.4

Q ss_pred             eEEEeeeCC---CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKN---TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~---t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.   |+++||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus        34 ~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (98)
T 2cpf_A           34 SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK   90 (98)
T ss_dssp             EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred             EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence            578888887   78999999999999999999999 899999999999999987654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.00  E-value=4.6e-10  Score=81.51  Aligned_cols=53  Identities=11%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             eEEEeeeCCCC---CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~---~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.++   ++||||||+|.++++|++|++ ++++.|+|++|.|..|.++.+
T Consensus        47 ~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           47 KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC  103 (111)
T ss_dssp             EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred             EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence            57888888754   566999999999999999999 899999999999999998864

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.00  E-value=1.2e-10  Score=83.16  Aligned_cols=51  Identities=20%  Similarity=0.462  Sum_probs=46.8

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .++.|+.||++||||||+|.+.+++.+|++++++.|+|+.|.|..+.++..
T Consensus        47 ~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~   97 (101)
T 1fj7_A           47 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG   97 (101)
T ss_dssp             CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred             EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence            367888999999999999999999999999999999999999999987643

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=8.6e-11  Score=86.76  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|++| .+|++||||||+|.+++++++|++.+++.|+||.|+|..+.++
T Consensus        56 ~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~  105 (123)
T 2dha_A           56 GILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA  105 (123)
T ss_dssp             GEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred             eEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence            5889999 5899999999999999999999999999999999999887544

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.00  E-value=1.5e-10  Score=95.17  Aligned_cols=52  Identities=19%  Similarity=0.360  Sum_probs=48.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|+|++|+.||++||||||+|.+.+++.+||+ ++++.|+|+.|.|..|.+..
T Consensus        99 ~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~  151 (229)
T 3q2s_C           99 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF  151 (229)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCc
Confidence            68899999999999999999999999999999 99999999999999997654

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.99  E-value=4.3e-10  Score=81.03  Aligned_cols=53  Identities=34%  Similarity=0.517  Sum_probs=48.7

Q ss_pred             eEEEeee-CCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCch
Q psy633            2 NASVMFD-KNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d-~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.| +.+|++||||||+|.+.++|.+|++ + +++.|+|+.|.|..+.++..
T Consensus        44 ~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~   99 (107)
T 2cph_A           44 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT   99 (107)
T ss_dssp             EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred             EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence            5788889 8899999999999999999999998 8 99999999999999987654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.99  E-value=2.2e-10  Score=78.91  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=45.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      ++.|+.|+.||++||||||+|.+.+++.+|++ +++..++|+.+++.++.
T Consensus        34 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A           34 STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            57899999999999999999999999999999 99999999999987654

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=98.99  E-value=1.6e-10  Score=87.23  Aligned_cols=53  Identities=13%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++|.|++|+. |++||||||+|.+++++++|++++++.|+||.|+|..+.++..
T Consensus        73 ~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~  125 (139)
T 2hgn_A           73 VRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA  125 (139)
T ss_dssp             SEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred             eEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence            3688999986 9999999999999999999999999999999999998876643

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.99  E-value=2.6e-10  Score=88.28  Aligned_cols=53  Identities=28%  Similarity=0.484  Sum_probs=49.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||++||||||+|.+.+++.+|++ ++++.|+|++|.|..|.++..
T Consensus        99 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  152 (158)
T 2kn4_A           99 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP  152 (158)
T ss_dssp             EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred             EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            57899999999999999999999999999998 999999999999999987643

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.99  E-value=4e-10  Score=88.42  Aligned_cols=90  Identities=19%  Similarity=0.319  Sum_probs=69.8

Q ss_pred             eEEEeeeCCCC--CccCeEEEEecChHHHHHHHh-cCCceec---CccceecCCCCCchhhhhhhhhhhhhhhhhhhhhh
Q psy633            2 NASVMFDKNTG--LSKGFGFVTFQNKEAVDKVFS-TDSHVLE---GSRLSIQPSDSHNSQVKKKIETKETASFSRMAENM   75 (300)
Q Consensus         2 ~~~~~~d~~t~--~~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l   75 (300)
                      ++.+++|+.+|  ++||||||+|.++++|.+|++ +++..+.   ++.+.+..+.++...   ......           
T Consensus        32 ~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------   97 (175)
T 3nmr_A           32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN---AVEDRK-----------   97 (175)
T ss_dssp             EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS---CGGGSE-----------
T ss_pred             EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc---cCCCCe-----------
Confidence            67899999987  999999999999999999998 8887765   466666665433221   111112           


Q ss_pred             hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                              .||++++..++++++.++|..|+.+.....
T Consensus        98 --------l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~  127 (175)
T 3nmr_A           98 --------LFIGMISKKCTENDIRVMFSSFGQIEECRI  127 (175)
T ss_dssp             --------EEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             --------EEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence                    389999999999999999999998765444

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.98  E-value=3.8e-10  Score=80.81  Aligned_cols=47  Identities=17%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      +|.|++|+. |++||||||+|.++++|.+|+. ++|..++||+|.|..+
T Consensus        56 ~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           56 EMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             EEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             EEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            678888864 8999999999999999999998 9999999999998754

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.98  E-value=3.6e-10  Score=85.55  Aligned_cols=53  Identities=23%  Similarity=0.468  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ +++..|+|+.|.|..+.++..
T Consensus        71 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  124 (139)
T 1u6f_A           71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ  124 (139)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred             EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            68899999999999999999999999999999 999999999999999987643

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.98  E-value=5.1e-10  Score=87.66  Aligned_cols=85  Identities=12%  Similarity=0.258  Sum_probs=68.6

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhh
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDY   85 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~   85 (300)
                      +.+..++++||||||+|.++++|.+|+.++++.++|+++.|..+.+......    ...                   .+
T Consensus        42 v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~----~~~-------------------l~   98 (172)
T 2g4b_A           42 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG----AHK-------------------LF   98 (172)
T ss_dssp             EEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTT----TTC-------------------EE
T ss_pred             eeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCC----CCE-------------------EE
Confidence            3444567889999999999999999999999999999999998765432111    112                   28


Q ss_pred             hcccccCCChHHHHHHHHhhcccccccC
Q psy633           86 LPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      |++++..++++++.++|..|+.+.....
T Consensus        99 v~nlp~~~t~~~l~~~f~~~G~v~~v~i  126 (172)
T 2g4b_A           99 IGGLPNYLNDDQVKELLTSFGPLKAFNL  126 (172)
T ss_dssp             EECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             EEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence            9999999999999999999998765443

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.98  E-value=5.4e-10  Score=95.38  Aligned_cols=97  Identities=12%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFN   80 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~   80 (300)
                      +|.++.|+. |++||||||+|.+.+++.+|+. ++++.++|++|.|..+.++....+....                .-.
T Consensus       147 ~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~----------------~~~  209 (292)
T 2ghp_A          147 SIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSA----------------TLE  209 (292)
T ss_dssp             EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------CCT
T ss_pred             EEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccccccc----------------CCC
Confidence            577888876 8999999999999999999999 9999999999999999876543322000                001


Q ss_pred             HHhhhhcccccC-CChHHHHHHHHhhcccccccCCC
Q psy633           81 QACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        81 ~a~~~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ..+.||++++.. ++++++.++|..|+.+.......
T Consensus       210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~  245 (292)
T 2ghp_A          210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA  245 (292)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred             CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence            122389999999 99999999999999877655433

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.98  E-value=4.6e-10  Score=82.43  Aligned_cols=48  Identities=35%  Similarity=0.570  Sum_probs=45.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      ++.|++|+.||++||||||+|.+.+++.+|++ +++..|+|++|+|..+
T Consensus        69 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           69 SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            57899999999999999999999999999998 9999999999999876

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.97  E-value=1.2e-10  Score=86.39  Aligned_cols=51  Identities=16%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +.++.|..||++||||||+|.+.+++.+|+.++++.|+||.|.|..+.++.
T Consensus        55 ~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~  105 (124)
T 1wel_A           55 SIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG  105 (124)
T ss_dssp             TCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             eEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence            467788899999999999999999999999999999999999999987543

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.97  E-value=3.8e-10  Score=84.97  Aligned_cols=53  Identities=28%  Similarity=0.484  Sum_probs=49.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||++||||||+|.+.+++++|+. +++..|+|++|.|..+.++..
T Consensus        76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~  129 (135)
T 2lea_A           76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP  129 (135)
T ss_dssp             EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            67889999999999999999999999999998 899999999999999986543

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.96  E-value=7e-10  Score=81.20  Aligned_cols=51  Identities=25%  Similarity=0.569  Sum_probs=46.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|+.|+++||||||+|.+.+++++|++ +++ .|+|+.|.|..+.++.
T Consensus        46 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~   97 (116)
T 2cqd_A           46 EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA   97 (116)
T ss_dssp             EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred             EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence            67899999999999999999999999999999 676 9999999999997543

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.96  E-value=1.4e-10  Score=84.72  Aligned_cols=51  Identities=24%  Similarity=0.397  Sum_probs=47.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|+.|+.||++||||||+|.+.+++.+|+.++++.|+|+.|.|..+.++
T Consensus        54 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~  104 (114)
T 2cq4_A           54 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE  104 (114)
T ss_dssp             EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred             EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence            678999999999999999999999999999999999999999999887654

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.95  E-value=4.5e-10  Score=83.51  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.||+++|||||+|.+.++|.+|++ +++..|+|+.|.|..|.++..
T Consensus        51 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  104 (126)
T 3ex7_B           51 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP  104 (126)
T ss_dssp             EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence            57889999999999999999999999999998 999999999999999976543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.95  E-value=8.4e-10  Score=89.21  Aligned_cols=102  Identities=11%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhh--hhh----------hhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKK--IET----------KETASF   68 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~--~~~----------~~~~~~   68 (300)
                      +|+|++|     +||||||+|.+.++|++|++ +++..+.|++|.|..+..+....+..  ...          ....++
T Consensus        34 ~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~  108 (205)
T 3tyt_A           34 KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRF  108 (205)
T ss_dssp             EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSC
T ss_pred             EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccc
Confidence            4667665     48999999999999999998 99999999999999886432111100  000          000000


Q ss_pred             hhhh-hhhhhHH-HHHhhhhcccccCCChHHHHHHHHhhccc
Q psy633           69 SRMA-ENMEDRF-NQACDYLPSLVKKLDSSTLLKFYALYKQA  108 (300)
Q Consensus        69 ~~~~-~~l~~~F-~~a~~~v~~~~~~~~~~~~~~~~~~~k~~  108 (300)
                      .... ....... .....||++++..++++++.++|..|+.+
T Consensus       109 ~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v  150 (205)
T 3tyt_A          109 STPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK  150 (205)
T ss_dssp             SSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred             cCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence            0000 0000000 01235899999999999999999999987

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.94  E-value=7.6e-10  Score=79.47  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=47.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC---ccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG---SRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g---~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+ +|++||||||+|.+.++|.+|++ +++..+.|   ++|.|..|.++..
T Consensus        44 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           44 ECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             EEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred             EEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence            57889997 89999999999999999999998 99999998   9999999987654

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=7.9e-10  Score=79.08  Aligned_cols=51  Identities=29%  Similarity=0.537  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|  +|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus        44 ~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2d9p_A           44 SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE   95 (103)
T ss_dssp             EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred             EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence            5778888  89999999999999999999999 999999999999999987654

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=98.94  E-value=3.8e-10  Score=82.32  Aligned_cols=50  Identities=10%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecC----h-HH---HHHHHh---cCCceecCccceecCCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQN----K-EA---VDKVFS---TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~----~-~~---~~~a~~---~~~~~~~g~~~~v~~a~   50 (300)
                      .+|.+++||.||+|||||||+|.+    + ++   |.+|+.   +++..|+||+|+|..-.
T Consensus        34 ~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~   94 (136)
T 2j8a_A           34 SHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK   94 (136)
T ss_dssp             SEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred             EEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence            368999999999999999999996    2 32   777765   59999999999998754

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.93  E-value=8.8e-10  Score=77.80  Aligned_cols=50  Identities=4%  Similarity=0.023  Sum_probs=45.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.+   ||||||+|.+.++|.+|++ +++..++||+|.|..|.++..
T Consensus        42 ~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   92 (96)
T 2dgx_A           42 SVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG   92 (96)
T ss_dssp             EEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred             EEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            5789999876   9999999999999999999 999999999999999987643

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=8e-10  Score=78.76  Aligned_cols=52  Identities=21%  Similarity=0.411  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|+++.+ .+|++||||||+|.+.+++++|++ ++++.|+|+.|.|..+.++..
T Consensus        41 ~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   93 (101)
T 2fc9_A           41 FIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS   93 (101)
T ss_dssp             EEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred             EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence            4567777 789999999999999999999999 999999999999999987643

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=76.93  Aligned_cols=49  Identities=27%  Similarity=0.489  Sum_probs=45.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +|.|+.|+. |++||||||+|.+.+++.+|++ ++++.++|++|.|..+..
T Consensus        45 ~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (95)
T 2ywk_A           45 KVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS   94 (95)
T ss_dssp             EEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence            578899986 9999999999999999999999 999999999999998753

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.93  E-value=5.2e-10  Score=77.52  Aligned_cols=51  Identities=18%  Similarity=0.381  Sum_probs=46.9

Q ss_pred             eEEEeeeCCCCC-ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGL-SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~-~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.++.|+.++. ++|||||+|.+.+++.+|++ +++..++|+.|.|..+.+.
T Consensus        33 ~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   85 (88)
T 4a8x_A           33 MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP   85 (88)
T ss_dssp             EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred             EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence            578889998877 99999999999999999999 8999999999999988764

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.92  E-value=9.7e-10  Score=81.47  Aligned_cols=51  Identities=27%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|+.|+ +|++||||||+|.+.+++.+|++ +++..++|+.|.|..|.+..
T Consensus        64 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  115 (124)
T 2kt5_A           64 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI  115 (124)
T ss_dssp             EEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred             EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence            68899998 99999999999999999999999 99999999999999987654

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.92  E-value=8.8e-10  Score=75.15  Aligned_cols=44  Identities=16%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCc-cceec
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGS-RLSIQ   47 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~-~~~v~   47 (300)
                      ++.++  +.||++||||||+|.+.++|.+|++ +++..++|+ +|.|.
T Consensus        36 ~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~   81 (81)
T 2krb_A           36 NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN   81 (81)
T ss_dssp             EEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred             EEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence            34444  5799999999999999999999999 999999999 88873

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.92  E-value=1.3e-09  Score=92.62  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=39.9

Q ss_pred             CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|++||||||+|.+.+++.+|++ +++..|.|+.|.|..+..+.
T Consensus        48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   91 (282)
T 3pgw_A           48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS   91 (282)
T ss_pred             CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence            89999999999999999999997 99999999999999886544

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-10  Score=85.21  Aligned_cols=52  Identities=17%  Similarity=0.310  Sum_probs=48.8

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      |.|++|+.||++||||||+|.+.++|.+|++ +++..++|++|.|..+.++..
T Consensus        45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD   97 (116)
Confidence            7899999999999999999999999999999 899999999999999987654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.91  E-value=8.4e-10  Score=88.49  Aligned_cols=105  Identities=10%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhh
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDY   85 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~   85 (300)
                      +.+..++++||||||+|.++++|.+|+.++++.++|++|.|..+.++.......... .. ..... ..-...-.....|
T Consensus        42 v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~l~  118 (198)
T 2yh0_A           42 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENP-SV-YVPGV-VSTVVPDSAHKLF  118 (198)
T ss_dssp             EEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCS-SC-CCTTS-SCCCSSCCCCEEE
T ss_pred             eEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCC-cC-CCCCC-ccCCCCCCCCEEE
Confidence            445567899999999999999999999999999999999999987653221100000 00 00000 0000001123348


Q ss_pred             hcccccCCChHHHHHHHHhhcccccccC
Q psy633           86 LPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      |++++..++++++.++|..|+.+.....
T Consensus       119 v~nl~~~~~~~~l~~~f~~~G~v~~~~~  146 (198)
T 2yh0_A          119 IGGLPNYLNDDQVKELLTSFGPLKAFNL  146 (198)
T ss_dssp             EECCCTTCCHHHHHHHHHTBSCEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHHcCCccEEEE
Confidence            9999999999999999999997754443

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.91  E-value=1e-09  Score=79.00  Aligned_cols=48  Identities=29%  Similarity=0.401  Sum_probs=45.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|++|+ +|++||||||+|.+.++|.+|++ +++..|+|++|.|..|.
T Consensus        58 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           58 KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            67899998 99999999999999999999999 89999999999998764

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.91  E-value=8.2e-10  Score=79.35  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCc-cceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGS-RLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~-~~~v~~a~~~   52 (300)
                      +|.|+  +.||++||||||+|.+.++|.+|+. +++..|+|+ +|.|..|...
T Consensus        50 ~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           50 NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             EEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             EEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            45555  5799999999999999999999999 999999999 9999998754

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.90  E-value=1.3e-09  Score=84.25  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|+.|+.|+++||||||+|.+.++|.+|++ ++++.|+|++|.|..|.++.
T Consensus        68 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  120 (156)
T 1h2v_Z           68 KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK  120 (156)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred             EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            68899999999999999999999999999999 89999999999999998654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=82.76  Aligned_cols=48  Identities=21%  Similarity=0.384  Sum_probs=44.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      ++.|++|+.||++||||||+|.+.+++.+|++ +++..|+|++|+|..|
T Consensus        92 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           92 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            57889999999999999999999999999997 9999999999999765

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.88  E-value=1.2e-09  Score=85.22  Aligned_cols=54  Identities=17%  Similarity=0.330  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|+.|+.||++||||||+|.+.++|.+|+. +++..|+|++|.|..+.++...
T Consensus       101 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~  155 (165)
T 1rk8_A          101 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK  155 (165)
T ss_dssp             EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred             EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence            57899999999999999999999999999998 9999999999999999876543

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.88  E-value=9.2e-10  Score=78.93  Aligned_cols=49  Identities=12%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             eEEEeeeCCC--CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNT--GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t--~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|++|+.+  +++|||+||+|.++++|.+|++ |+|..++||+|.|..+.
T Consensus        44 ~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~   95 (105)
T 3v4m_A           44 SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   95 (105)
T ss_dssp             EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence            6788888865  4799999999999999999998 99999999999998764

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.88  E-value=2.6e-09  Score=79.21  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .||++||||||+|.+.++|.+|+. +++..|.|++|.|..|.++..
T Consensus        67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~  112 (127)
T 2a3j_A           67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS  112 (127)
T ss_dssp             CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred             cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence            479999999999999999999998 999999999999999987654

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.87  E-value=1.9e-09  Score=75.28  Aligned_cols=51  Identities=22%  Similarity=0.446  Sum_probs=45.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|++|  +|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++..
T Consensus        37 ~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           37 YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG   88 (92)
T ss_dssp             EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred             EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence            4666664  89999999999999999999999 899999999999999987643

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=98.86  E-value=6e-10  Score=79.59  Aligned_cols=51  Identities=31%  Similarity=0.638  Sum_probs=46.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+ +|++||||||+|.+.+++++|+. +++.++|+.|.|..+.++..
T Consensus        38 ~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~~~   88 (102)
T 2xs2_A           38 EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQN   88 (102)
T ss_dssp             EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEECC-
T ss_pred             EEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcCcc
Confidence            57899998 99999999999999999999999 99999999999998876543

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=77.54  Aligned_cols=50  Identities=24%  Similarity=0.393  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|+.|+ +|++||||||+|.+.+++.+|++ ++++.|+|+.|.|..+.+.
T Consensus        44 ~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   94 (114)
T 2do0_A           44 RADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA   94 (114)
T ss_dssp             EEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred             EEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence            57889997 69999999999999999999999 9999999999999988643

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=3.7e-09  Score=75.54  Aligned_cols=52  Identities=29%  Similarity=0.590  Sum_probs=46.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|+.|+.  .+||||||+|.+.++|.+|+. ++++.|+|+.|.|..+.++...
T Consensus        44 ~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   96 (103)
T 2cq3_A           44 DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT   96 (103)
T ss_dssp             EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred             EEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence            577888864  499999999999999999998 8999999999999999877543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=2.8e-09  Score=77.68  Aligned_cols=50  Identities=20%  Similarity=0.387  Sum_probs=43.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee--------cCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL--------EGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~--------~g~~~~v~~a~~~   52 (300)
                      ++.|+.|+ +|++||||||+|.+.+++.+|++ +++..|        .|+++.|+.|.|+
T Consensus        54 ~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~  112 (114)
T 1x5o_A           54 STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS  112 (114)
T ss_dssp             EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred             EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence            57899998 99999999999999999999999 999999        4666777777654

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=3.4e-09  Score=75.74  Aligned_cols=51  Identities=10%  Similarity=0.294  Sum_probs=45.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|+.+  +||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus        44 ~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2cqi_A           44 SCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS   95 (103)
T ss_dssp             EEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred             EEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence            5788888554  79999999999999999999 999999999999999987643

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.84  E-value=3.6e-09  Score=72.13  Aligned_cols=37  Identities=14%  Similarity=0.343  Sum_probs=35.6

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      |||||||+|.++++|++|++ +|+..+.||+|+|+.|.
T Consensus        42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~   79 (89)
T 2wbr_A           42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS   79 (89)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred             CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence            89999999999999999999 99999999999999983

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.84  E-value=2.9e-09  Score=85.20  Aligned_cols=55  Identities=27%  Similarity=0.545  Sum_probs=47.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQV   56 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~   56 (300)
                      ++.|+.|+.+|++||||||+|.+.++|.+|+..+++.|+|+.|.|..|.++....
T Consensus       133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~  187 (196)
T 1l3k_A          133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA  187 (196)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred             EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence            5789999999999999999999999999999988999999999999999876543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.82  E-value=6.3e-09  Score=85.57  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhh----------hhhhhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIE----------TKETASFSR   70 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~----------~~~~~~~~~   70 (300)
                      +|.|++|+     ||||||+|.+.++|.+|++ +++..+.|++|.|..+.++.....+...          .....++..
T Consensus        64 ~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (229)
T 2adc_A           64 RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK  138 (229)
T ss_dssp             EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCS
T ss_pred             EEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCC
Confidence            56777775     8999999999999999998 9999999999999988755321111000          000000000


Q ss_pred             hh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633           71 MA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC  113 (300)
Q Consensus        71 ~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~  113 (300)
                      .. ..... .-...+.||++++..++++++.++|..|+ .+.....
T Consensus       139 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i  184 (229)
T 2adc_A          139 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF  184 (229)
T ss_dssp             TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred             ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence            00 00000 00123358999999999999999999998 6654443

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.81  E-value=3.8e-09  Score=76.33  Aligned_cols=49  Identities=31%  Similarity=0.642  Sum_probs=44.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.+++|+  +++||||||+|.+.++|.+|++ +++..++|++|.|..+.++
T Consensus        58 ~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  107 (109)
T 2err_A           58 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR  107 (109)
T ss_dssp             CEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             EEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            57888885  4599999999999999999999 8999999999999999876

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.81  E-value=1.9e-09  Score=78.64  Aligned_cols=50  Identities=28%  Similarity=0.388  Sum_probs=44.1

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +..+..+|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus        57 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~  107 (115)
T 2cpx_A           57 IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ  107 (115)
T ss_dssp             CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred             EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence            33444599999999999999999999998 899999999999999987654

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.81  E-value=2.1e-09  Score=78.56  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             eEEEeeeCC----CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKN----TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~----t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|++|+.    ++++|||+||+|.++++|.+|++ ++|..++||+|.|..+.
T Consensus        54 ~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~  107 (118)
T 3ue2_A           54 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  107 (118)
T ss_dssp             EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence            678888875    57899999999999999999999 99999999999998764

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.78  E-value=1.8e-09  Score=76.11  Aligned_cols=46  Identities=17%  Similarity=0.427  Sum_probs=42.3

Q ss_pred             CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            9 KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         9 ~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +.+|++||||||+|.+.+++.+|+. +++..|+|++|.|..+.++..
T Consensus        47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   93 (96)
T 1fjc_A           47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG   93 (96)
T ss_dssp             EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred             CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            4689999999999999999999999 999999999999999987643

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.77  E-value=5.9e-09  Score=83.60  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhh----------hhhhhhhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIET----------KETASFSR   70 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~----------~~~~~~~~   70 (300)
                      +|.+++|+     ||||||+|.+.++|.+|++ +++..++|++|.|..+.++.....+....          ....++..
T Consensus        33 ~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  107 (198)
T 1qm9_A           33 RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK  107 (198)
T ss_dssp             EEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSS
T ss_pred             EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccC
Confidence            46666664     8999999999999999998 99999999999999887543211110000          00000000


Q ss_pred             hh-hhhhh-HHHHHhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633           71 MA-ENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC  113 (300)
Q Consensus        71 ~~-~~l~~-~F~~a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~  113 (300)
                      .. ..... .-...+.+|++++..++++++.++|..|+ .+.....
T Consensus       108 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i  153 (198)
T 1qm9_A          108 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF  153 (198)
T ss_dssp             CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred             ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence            00 00000 00123347999999999999999999998 6654443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.73  E-value=1.1e-08  Score=83.07  Aligned_cols=53  Identities=23%  Similarity=0.408  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|+.|+.+|++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus       154 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~  207 (216)
T 2qfj_A          154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM  207 (216)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred             EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence            57899999999999999999999999999999 999999999999999987644

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.71  E-value=1.2e-08  Score=80.29  Aligned_cols=50  Identities=28%  Similarity=0.377  Sum_probs=46.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|+.|+ +|++||||||+|.+.++|.+|++ +++..|+|++|.|..|.+.
T Consensus       117 ~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A          117 KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             EEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             EEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            68899998 99999999999999999999999 9999999999999998754

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.70  E-value=1.5e-08  Score=72.07  Aligned_cols=48  Identities=23%  Similarity=0.344  Sum_probs=40.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|++|      ||||||+|.+.++|.+|++ ++  +..|+||+|.|..|.++...
T Consensus        45 ~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~   95 (105)
T 1sjq_A           45 NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK   95 (105)
T ss_dssp             EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred             EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence            5667654      7999999999999999998 65  57899999999999876543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.70  E-value=3.1e-08  Score=84.39  Aligned_cols=80  Identities=6%  Similarity=0.056  Sum_probs=67.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      +|.|+.|+.+  ++|||||+|.+.++|.+|+++++..++|++|.|..+.           ...+                
T Consensus        70 ~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~-----------~~~l----------------  120 (292)
T 2ghp_A           70 HVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT-----------ECTL----------------  120 (292)
T ss_dssp             EEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------SCEE----------------
T ss_pred             EEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------CCEE----------------
Confidence            5788888754  6899999999999999999999999999999998763           1122                


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYK-QATVGQC  113 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~  113 (300)
                         ||++++..++++++.++|..|+ .+.....
T Consensus       121 ---~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i  150 (292)
T 2ghp_A          121 ---WMTNFPPSYTQRNIRDLLQDINVVALSIRL  150 (292)
T ss_dssp             ---EEECCCTTCCHHHHHHHHHHTTCCCCEEEC
T ss_pred             ---EEECCCCCCCHHHHHHHHHHhCCCeEEEEE
Confidence               8999999999999999999999 7665443

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.70  E-value=1.1e-08  Score=73.92  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +++||||||+|.+.++|++|++ +++..++||+|.|..+...
T Consensus        64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~  105 (111)
T 2jvr_A           64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP  105 (111)
T ss_dssp             CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            4699999999999999999998 9999999999999998654

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=1.9e-08  Score=72.97  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=42.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +| ++.|+   .+||||||+|.+.++|.+|+. +++..++||+|.|..+.++..
T Consensus        55 ~v-~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~  104 (112)
T 2dit_A           55 KL-LLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD  104 (112)
T ss_dssp             EE-EEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred             EE-EEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence            45 34564   389999999999999999998 999999999999999987643

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.68  E-value=2.1e-08  Score=73.12  Aligned_cols=49  Identities=8%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.++.|   +++||||||+|.+.++|.+|++ +++..++|+.|.|..+.++.
T Consensus        37 ~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   86 (115)
T 3lqv_A           37 QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR   86 (115)
T ss_dssp             EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred             EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence            4666665   5669999999999999999999 99999999999999987654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.68  E-value=7.9e-09  Score=78.49  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            9 KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         9 ~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ..||++||||||+|.+.++|.+|+. +++..|+|++|.|..|.++.
T Consensus        86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~  131 (143)
T 3egn_A           86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR  131 (143)
T ss_dssp             EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred             ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            4689999999999999999999999 99999999999999997654

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.1e-08  Score=70.76  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +++||||||+|.+.+++.+|++ +++..|+|+.|.|..+.++.
T Consensus        53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   95 (97)
T 2e5j_A           53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR   95 (97)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence            4799999999999999999997 89999999999999998764

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.67  E-value=1.1e-08  Score=83.07  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=45.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|+|++|+  +.+||||||+|.+.++|.+|++ ++++.|+||+|.|..|.++..
T Consensus       132 ~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~  183 (213)
T 4f02_A          132 SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE  183 (213)
T ss_dssp             EEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred             EEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence            57888985  4589999999999999999998 999999999999999987643

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.66  E-value=1.8e-08  Score=90.52  Aligned_cols=52  Identities=13%  Similarity=0.540  Sum_probs=48.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|+.|+.||+++|||||+|.+.++|.+||. +++..|+|+.|.|..+.++.
T Consensus       131 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~  183 (437)
T 3pgw_S          131 RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT  183 (437)
T ss_pred             EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence            67899999999999999999999999999997 99999999999999998654

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.65  E-value=9.8e-09  Score=72.40  Aligned_cols=46  Identities=13%  Similarity=0.214  Sum_probs=41.8

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      .+|++||||||+|.+.+++.+|++ +++..++|++|.|..+.++...
T Consensus        46 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   92 (97)
T 1nu4_A           46 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   92 (97)
T ss_dssp             HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence            478999999999999999999998 8999999999999999876543

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.65  E-value=4.1e-08  Score=70.76  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=40.6

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .++++||||||+|.+.++|.+|++ +++..|+|++|.|..+.++..
T Consensus        56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~  101 (109)
T 1x4a_A           56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG  101 (109)
T ss_dssp             CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred             ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence            456799999999999999999997 999999999999999987643

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.64  E-value=2.6e-08  Score=83.59  Aligned_cols=73  Identities=14%  Similarity=0.274  Sum_probs=63.1

Q ss_pred             CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccc
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLV   90 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~   90 (300)
                      +++||||||+|.+.++|.+|+. +++..|.|+.|.|..+.+..          .+                   ||++++
T Consensus        55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~----------~l-------------------~v~nl~  105 (261)
T 3sde_A           55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA----------AL-------------------TVKNLS  105 (261)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS----------EE-------------------EEESCC
T ss_pred             eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC----------cc-------------------cccCCC
Confidence            3568999999999999999998 99999999999999886421          22                   899999


Q ss_pred             cCCChHHHHHHHHhhcccccccC
Q psy633           91 KKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        91 ~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      ..++++++.++|..|+.+.....
T Consensus       106 ~~~t~~~l~~~F~~~G~i~~v~i  128 (261)
T 3sde_A          106 PVVSNELLEQAFSQFGPVEKAVV  128 (261)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEe
Confidence            99999999999999998765444

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.64  E-value=3.7e-08  Score=69.96  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=37.5

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++||||||+|.+.+++.+|+. +++..++|+.|.|..+.++
T Consensus        61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  101 (101)
T 2la4_A           61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER  101 (101)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence            689999999999999999998 8999999999999998764

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.61  E-value=2.2e-08  Score=71.19  Aligned_cols=48  Identities=23%  Similarity=0.432  Sum_probs=42.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.|     +||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus        29 ~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   77 (101)
T 2hvz_A           29 TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR   77 (101)
T ss_dssp             EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred             EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence            5677766     89999999999999999999 899999999999999987653

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=8.9e-08  Score=67.01  Aligned_cols=48  Identities=33%  Similarity=0.606  Sum_probs=43.1

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .|+.|+.+|+   ||||+|.+++++.+|++++++.|+|+.|.|..+.++..
T Consensus        37 ~v~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~   84 (94)
T 2e5g_A           37 SVVMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF   84 (94)
T ss_dssp             EEEECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred             EEEEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence            4588888887   99999999999999999999999999999999876654

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=7.7e-08  Score=67.77  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +++||||||+|.+.+++.+|++ +++..|+|++|.|..+.++..
T Consensus        46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~   89 (97)
T 1x5p_A           46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM   89 (97)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence            3789999999999999999997 999999999999999987643

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.57  E-value=5.4e-08  Score=74.44  Aligned_cols=47  Identities=23%  Similarity=0.435  Sum_probs=42.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|+|+.|     +||||||+|.+.+++.+|+. +++..|+|++|.|..+.++.
T Consensus       102 ~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  149 (150)
T 2i2y_A          102 SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK  149 (150)
T ss_dssp             EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred             EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence            4667666     79999999999999999998 99999999999999998763

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.56  E-value=7.2e-08  Score=69.48  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.++.+      ||||||+|.+.++|.+|+. +++..|+|+.|.|..+.++..
T Consensus        54 ~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  101 (109)
T 1x4g_A           54 EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD  101 (109)
T ss_dssp             EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred             EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence            4556554      8999999999999999997 899999999999999987654

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.1e-07  Score=67.20  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             CCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +++||||||+|.+.++|.+|++. ...+.|++|.|..+.++..
T Consensus        51 ~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~   92 (100)
T 2d9o_A           51 SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ   92 (100)
T ss_dssp             SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred             cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence            58999999999999999999984 4557899999999886653

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.56  E-value=4.2e-08  Score=71.12  Aligned_cols=45  Identities=11%  Similarity=0.083  Sum_probs=39.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|+++  +  +||||||+|.+.++|.+|++ |+|..++||+|.|..+.
T Consensus        46 ~v~i~~~--~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~   91 (114)
T 3s6e_A           46 HIYVDKN--S--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP   91 (114)
T ss_dssp             EEEECTT--C--TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEecC--C--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence            4566544  2  69999999999999999998 99999999999998874

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.55  E-value=5e-08  Score=67.45  Aligned_cols=40  Identities=23%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++||||||+|.+++++.+|++ +++..++|++|.|..+...
T Consensus        38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A           38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence            799999999999999999999 9999999999999988654

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.53  E-value=6.8e-08  Score=70.43  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=40.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|+.|      ||||||+|.+.++|.+|++ ++  +..|+||+|.|..|.++..
T Consensus        60 ~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~  109 (119)
T 2ad9_A           60 NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL  109 (119)
T ss_dssp             EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred             EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence            5677765      7999999999999999998 65  5689999999999987643

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.52  E-value=1.2e-07  Score=68.17  Aligned_cols=40  Identities=23%  Similarity=0.397  Sum_probs=36.8

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ||||||+|.+.++|.+|++ +++..++|+.|.|..+.++..
T Consensus        65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (108)
T 2jvo_A           65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK  105 (108)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence            8999999999999999998 899999999999999987643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.51  E-value=9e-08  Score=81.16  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=48.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|+.|+ +|+++|||||+|.+.++|.+|+. +++..++|++|.|..+.++..
T Consensus       214 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~  266 (284)
T 3smz_A          214 FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP  266 (284)
T ss_dssp             EEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred             EEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence            67888986 89999999999999999999999 999999999999999988765

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.50  E-value=9.2e-08  Score=67.62  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +||||||+|.+.++|.+|++ ++++.|+|++|.|..+.++..
T Consensus        50 ~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   91 (99)
T 2cpj_A           50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS   91 (99)
T ss_dssp             TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence            48999999999999999997 899999999999999987643

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.50  E-value=1.2e-07  Score=67.18  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             cCeEEEEecChHHHHHHHh-c--CCceecCccceecCCCCCch
Q psy633           15 KGFGFVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ||||||+|.+.++|.+|++ +  ++..++||+|.|..|.++..
T Consensus        51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~   93 (101)
T 2cq1_A           51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL   93 (101)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred             CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence            8999999999999999998 4  57889999999999986643

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.7e-07  Score=64.98  Aligned_cols=40  Identities=23%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ||||||+|.+.+++.+|++ +++..++|++|.|..+.++..
T Consensus        42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   82 (90)
T 2dnq_A           42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK   82 (90)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence            7999999999999999998 999999999999999987654

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.49  E-value=8.9e-08  Score=68.89  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC-----ccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG-----SRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g-----~~~~v~~a~~~~~~   55 (300)
                      +|.|+.|       |||||+|.+.+++++|++ +++..|+|     +.|.|..|.++...
T Consensus        44 ~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~   96 (108)
T 1x4c_A           44 YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS   96 (108)
T ss_dssp             EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred             EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence            4566666       999999999999999999 99999999     99999999886543

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=8.3e-08  Score=69.80  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             EEEeeeCCC---CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            3 ASVMFDKNT---GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         3 ~~~~~d~~t---~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      +.++.|+.|   |++||||||+|.++++|++|++ +  +.++|+.+.+..+.+
T Consensus        37 ~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~~~~~~~   87 (114)
T 2dnl_A           37 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYLCVSSPT   87 (114)
T ss_dssp             EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEEEECCSS
T ss_pred             EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEEeccCCC
Confidence            567788887   8999999999999999999998 5  457888887766543

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.48  E-value=9.6e-08  Score=67.24  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=35.4

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCc--eecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSH--VLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~--~~~g~~~~v~~a~~~~   53 (300)
                      ++||||||+|.+.++|.+|++ +++.  .+.||+|.|..|.+++
T Consensus        55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~   98 (100)
T 3r27_A           55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK   98 (100)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence            368999999999999999998 7665  4889999999987653

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.48  E-value=7.5e-08  Score=66.72  Aligned_cols=47  Identities=15%  Similarity=0.381  Sum_probs=33.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|     +||||||+|.++++|+++. .....++|++|.|..|.++..
T Consensus        40 ~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~~k~~   86 (89)
T 3d2w_A           40 DVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPKHN   86 (89)
T ss_dssp             EEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC----
T ss_pred             EEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcCCCCc
Confidence            4566664     8999999999999998543 224456799999999987643

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.48  E-value=7.1e-08  Score=67.35  Aligned_cols=42  Identities=19%  Similarity=0.336  Sum_probs=38.6

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCC-ceecCccceecCCCCCch
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDS-HVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g~~~~v~~a~~~~~   54 (300)
                      .+||||||+|.+.++|.+|++ +++ ..++|++|.|..+.++..
T Consensus        42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~   85 (93)
T 2cqh_A           42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL   85 (93)
T ss_dssp             EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence            379999999999999999998 999 999999999999987654

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.48  E-value=1.5e-07  Score=66.31  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceec--CccceecCCCCCch
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLE--GSRLSIQPSDSHNS   54 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~--g~~~~v~~a~~~~~   54 (300)
                      ||||||+|.+.++|++|++ +++..++  |++|.|..+.++..
T Consensus        53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~   95 (97)
T 1why_A           53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS   95 (97)
T ss_dssp             SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence            8999999999999999999 9999999  99999999987643

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.47  E-value=1.4e-07  Score=67.96  Aligned_cols=41  Identities=12%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             CccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~   53 (300)
                      ++||||||+|.+.++|.+|++ ++  +..|+||+|.|..|.++.
T Consensus        60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~  103 (112)
T 1x4f_A           60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK  103 (112)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence            468999999999999999998 54  567999999999987654

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.46  E-value=2.1e-07  Score=63.95  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=33.5

Q ss_pred             CccCeEEEEecChHHHHHHHhcCCceecCccceecC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP   48 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~   48 (300)
                      ++||||||+|.+.+++.+|+.+++..++|++|.|.+
T Consensus        51 ~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           51 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   86 (87)
T ss_dssp             SSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred             CCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence            458999999999999999999999999999999875

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.8e-07  Score=64.43  Aligned_cols=39  Identities=10%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             CeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           16 GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        16 Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      |||||+|.+.++|.+|++ |++..+.||+|+|..|..+..
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd   86 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE   86 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence            999999999999999998 999999999999999987643

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=1.6e-07  Score=66.41  Aligned_cols=42  Identities=21%  Similarity=0.460  Sum_probs=38.6

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .+||||||+|.+.++|.+|+. +++..|+|++|.|..+.++..
T Consensus        49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   91 (99)
T 2cpd_A           49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK   91 (99)
T ss_dssp             ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred             EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            358999999999999999999 999999999999999987654

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.42  E-value=2e-07  Score=71.88  Aligned_cols=94  Identities=12%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC-ceecC------ccceecCCCCCchhh--hhhhhhhhhhhhhh
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS-HVLEG------SRLSIQPSDSHNSQV--KKKIETKETASFSR   70 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~-~~~~g------~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~   70 (300)
                      +++.|++|..  +++|||||+|.+.+++++|++ +++ ..++|      +..............  .......       
T Consensus         1 ~~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   71 (158)
T 2kn4_A            1 MQYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMT-------   71 (158)
T ss_dssp             CEEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCC-------
T ss_pred             CcEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCC-------
Confidence            4678889865  699999999999999999996 443 22222      222222111111000  0001111       


Q ss_pred             hhhhhhhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           71 MAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        71 ~~~~l~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                                  ..||++++..++++++.++|..|+.+.......
T Consensus        72 ------------~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~  104 (158)
T 2kn4_A           72 ------------SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR  104 (158)
T ss_dssp             ------------EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC
T ss_pred             ------------EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence                        238999999999999999999999876555433

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.41  E-value=2.2e-07  Score=65.41  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=36.5

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +||||||+|.+.++|.+|++ +++..++|++|.|..+.++
T Consensus        56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN   95 (97)
T ss_dssp             CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence            48999999999999999999 9999999999999998765

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=3.3e-07  Score=62.66  Aligned_cols=37  Identities=16%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             ccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSD   50 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~   50 (300)
                      +||||||+|.+.+++.+|++ + ++..++|++|.|..|+
T Consensus        47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence            58999999999999999999 7 9999999999998763

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.40  E-value=1.4e-07  Score=68.10  Aligned_cols=40  Identities=10%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCcee-----cCccceecCCCCCc
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVL-----EGSRLSIQPSDSHN   53 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~-----~g~~~~v~~a~~~~   53 (300)
                      .||||||+|.+.++|++|++ ++++.+     .|+++.|..+....
T Consensus        62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p  107 (114)
T 2cq2_A           62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ  107 (114)
T ss_dssp             TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence            48999999999999999998 999998     78999998876543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.39  E-value=2.4e-07  Score=66.83  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=36.5

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +||||||+|.+.++|.+|++ +++..|+|+.|.|..+.++
T Consensus        61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~  100 (110)
T 1wf1_A           61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP  100 (110)
T ss_dssp             ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            78999999999999999997 9999999999999999754

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.39  E-value=2.7e-07  Score=64.77  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=37.3

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +||||||+|.+.+++.+|++ +++..+.|++|.|..+.++..
T Consensus        44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR   85 (96)
T ss_dssp             ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence            48999999999999999999 899999999999999876543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.38  E-value=1.2e-07  Score=67.25  Aligned_cols=46  Identities=11%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCC--ceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDS--HVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~--~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|      ||||||+|.+.++|.+|++ +++  ..|+||+|.|..|.++.
T Consensus        45 ~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~   93 (102)
T 1x4d_A           45 NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK   93 (102)
T ss_dssp             EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred             EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence            4666654      5999999999999999998 664  56999999999987543

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=3.8e-07  Score=63.44  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ||||||+|.+.+++.+|++ ++++.++|+.|.|..+.++..
T Consensus        44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   84 (92)
T 2dgt_A           44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR   84 (92)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence            5699999999999999998 999999999999999987654

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.37  E-value=3.2e-07  Score=65.34  Aligned_cols=41  Identities=20%  Similarity=0.461  Sum_probs=37.8

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchh
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      ||||||+|.+.+++.+|++ ++++.|+|++|.|..+.++...
T Consensus        45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   86 (103)
T 2dgu_A           45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK   86 (103)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence            7899999999999999999 8999999999999999876543

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.37  E-value=2.2e-07  Score=66.29  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             ccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~   54 (300)
                      .||||||+|.+.++|.+|++ ++  +..++|++|.|..+.++..
T Consensus        50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~   93 (104)
T 1wex_A           50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI   93 (104)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence            38999999999999999998 64  4569999999999986643

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.36  E-value=4.4e-07  Score=69.70  Aligned_cols=45  Identities=13%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhhh
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQVK   57 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~~   57 (300)
                      ++||||||+|.+.++|.+|++ +++..|.|  ++|+|..+.++.-..+
T Consensus        82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk  129 (164)
T 1sjr_A           82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK  129 (164)
T ss_dssp             SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccccc
Confidence            478999999999999999999 99999965  9999999988754433

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=4.5e-07  Score=62.80  Aligned_cols=39  Identities=15%  Similarity=0.417  Sum_probs=36.3

Q ss_pred             cCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           15 KGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ||||||+|.+.+++.+|++ +++..++|++|.|..+.++.
T Consensus        43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   82 (90)
T 2dnp_A           43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ   82 (90)
T ss_dssp             SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence            5699999999999999999 99999999999999998764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.33  E-value=4.7e-07  Score=73.92  Aligned_cols=49  Identities=12%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             eEEEeee----CCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFD----KNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d----~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      ++.|+++    +.|+++|||+||+|.+.+++.+|+. ++|..++||+|.+..+.
T Consensus       158 ~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          158 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence            4667744    4566999999999999999999999 99999999999998764

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=4.7e-07  Score=63.47  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=42.2

Q ss_pred             eE-EEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~-~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++ .|+.|+.+|+    |||+|.+.+++.+|+. +++..|+|++|.|..|.++.
T Consensus        44 ~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   93 (96)
T 2e44_A           44 SCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM   93 (96)
T ss_dssp             EEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred             EEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence            45 4788877765    9999999999999998 99999999999999998773

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.30  E-value=1.4e-06  Score=72.96  Aligned_cols=51  Identities=27%  Similarity=0.478  Sum_probs=44.2

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceec---CccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLE---GSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~---g~~~~v~~a~~~~   53 (300)
                      +|.|+.| .||++||||||+|.+.++|.+|+. + ++..+.   ||+|.|..+.+..
T Consensus       125 ~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~  180 (261)
T 3sde_A          125 KAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD  180 (261)
T ss_dssp             EEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred             EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence            5789999 699999999999999999999999 6 555555   9999999988654

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.29  E-value=3.9e-07  Score=65.84  Aligned_cols=40  Identities=13%  Similarity=0.002  Sum_probs=36.6

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++||||||+|.+.++|.+|++ +++..++|++|.|..|...
T Consensus        44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A           44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            488999999999999999998 9999999999999988643

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.27  E-value=3.1e-07  Score=63.30  Aligned_cols=48  Identities=15%  Similarity=0.363  Sum_probs=37.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      +|.|+.|     +||||||+|.+.+++++++.. ...++|++|.|..+.++...
T Consensus        34 ~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~~   81 (88)
T 1wf0_A           34 DVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKHNS   81 (88)
T ss_dssp             EEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCCC
T ss_pred             EEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCCCC
Confidence            4555544     899999999999999876543 46679999999999887543

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=7.1e-07  Score=60.83  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +++++.|+        +||+|.+.++|.+|++|++..++||.|+|+.+.|.
T Consensus        44 ~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d   86 (91)
T 2dnr_A           44 LIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS   86 (91)
T ss_dssp             EEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred             EEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence            45666664        89999999999999999999999999999988753

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.25  E-value=7.1e-07  Score=64.88  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCcc-----ceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSR-----LSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~-----~~v~~a~~~   52 (300)
                      +|.|+.|       |||||+|.+.++|++|++ +++..|+|+.     |+|..+.++
T Consensus        45 ~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~   94 (115)
T 3beg_B           45 YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR   94 (115)
T ss_dssp             EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred             EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence            4556555       999999999999999999 9999999999     666665554

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.23  E-value=1.4e-06  Score=64.34  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             ccCe-EEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhhhh
Q psy633           14 SKGF-GFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQVKK   58 (300)
Q Consensus        14 ~rGf-gfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~~~   58 (300)
                      +||| |||+|.+.++|.+|++ ++|..|.|  +.|+|..|+++.-..+.
T Consensus        64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~  112 (130)
T 3zzy_A           64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY  112 (130)
T ss_dssp             TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEe
Confidence            4788 9999999999999999 99999998  89999999877544443

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.21  E-value=1.1e-06  Score=72.07  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=35.5

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCcee------------cCccceecCCCCCch
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVL------------EGSRLSIQPSDSHNS   54 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~------------~g~~~~v~~a~~~~~   54 (300)
                      +||||||+|.+.++|+.|++ |+++.|            +|+.|.|+.|.+...
T Consensus       178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn  231 (240)
T 3u1l_A          178 SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD  231 (240)
T ss_dssp             GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence            68999999999999999998 999999            999999999986644

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.12  E-value=1.5e-06  Score=66.37  Aligned_cols=102  Identities=10%  Similarity=0.089  Sum_probs=68.9

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQ   81 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~   81 (300)
                      .+..+  ..+.+|+++|+|.+.++|++|++ + ++..++| .+.+..+.++................       ...-..
T Consensus         4 al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~   73 (150)
T 2i2y_A            4 KLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHR-------DSCPLD   73 (150)
T ss_dssp             EEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCS-------SSSTTS
T ss_pred             Eeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccc-------cCCCCC
Confidence            34444  45889999999999999999998 8 9999999 99999887643221110000000000       000011


Q ss_pred             HhhhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           82 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        82 a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ...||++++..++++++.++|..|+.+.......
T Consensus        74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~  107 (150)
T 2i2y_A           74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR  107 (150)
T ss_dssp             CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee
Confidence            2238999999999999999999999876555433

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.11  E-value=4.1e-06  Score=61.44  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=36.4

Q ss_pred             Ce-EEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCchhh
Q psy633           16 GF-GFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHNSQV   56 (300)
Q Consensus        16 Gf-gfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~~~~   56 (300)
                      || |||+|.+.++|.+|++ ++|..|.|  +.|+|..|.++.-..
T Consensus        62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v  106 (124)
T 2e5i_A           62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNV  106 (124)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCccee
Confidence            97 9999999999999999 99999988  689999998876433

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.97  E-value=5.4e-06  Score=56.77  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      .++++.|+        +||+|.+.++|.+|+++++..++||.++|+.-.
T Consensus        53 lvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~   93 (95)
T 1ufw_A           53 LVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS   93 (95)
T ss_dssp             EEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred             EEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence            56777775        999999999999999999999999999997643

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.25  E-value=0.00031  Score=60.68  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceec---Cc--cceecCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLE---GS--RLSIQPSD   50 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~---g~--~~~v~~a~   50 (300)
                      +||||||+|.+.++|++|++ +||..+-   |+  .+.+..+.
T Consensus        55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE   97 (345)
T ss_dssp             TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence            68999999999999999999 9999873   45  56666653

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=95.84  E-value=0.032  Score=44.32  Aligned_cols=78  Identities=21%  Similarity=0.280  Sum_probs=60.9

Q ss_pred             hHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC--CCCccchh------------hhHHHHHHHHcCCCCHHH
Q psy633           77 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPSWYNME------------AKSKYNAWNSLGQMAKSE  142 (300)
Q Consensus        77 ~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~~~------------~~~k~~aw~~~~~~~~~~  142 (300)
                      --|.++...+-.-.-.++.++...+.++.-|+..|+++..  .|++++..            .+.-+..|.++.+++.++
T Consensus        20 l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~~~~g~s~~~   99 (206)
T 1mix_A           20 LLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIE   99 (206)
T ss_dssp             HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHHHccCCCHHH
Confidence            3566666655544457899999999999999999998764  34443332            455688999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy633          143 AMSKYIALLNEV  154 (300)
Q Consensus       143 a~~~yi~~v~~l  154 (300)
                      |+..|++++..+
T Consensus       100 A~~~yL~~~~~l  111 (206)
T 1mix_A          100 AKVRYVKLARSL  111 (206)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhC
Confidence            999999999876

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.06  E-value=0.076  Score=38.24  Aligned_cols=34  Identities=9%  Similarity=0.123  Sum_probs=26.5

Q ss_pred             eEEEEecC-hHHHHHHHh-c--CCceecCccceecCCC
Q psy633           17 FGFVTFQN-KEAVDKVFS-T--DSHVLEGSRLSIQPSD   50 (300)
Q Consensus        17 fgfv~f~~-~~~~~~a~~-~--~~~~~~g~~~~v~~a~   50 (300)
                      +|||.|.+ +++|..|+. +  .+..|+|..+.+....
T Consensus        57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~   94 (121)
T 1owx_A           57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE   94 (121)
T ss_dssp             EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred             EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence            59999999 788888887 5  4677888777776544

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=92.98  E-value=0.06  Score=39.64  Aligned_cols=74  Identities=7%  Similarity=-0.043  Sum_probs=28.9

Q ss_pred             eEEEEecChHHHHHHHh-cCCceecCccceecCCCCCchhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhcccccCCCh
Q psy633           17 FGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKKLDS   95 (300)
Q Consensus        17 fgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~a~~~v~~~~~~~~~   95 (300)
                      +.|..|.+...+..|+. +++....|+.- .....+.    ........+                   ||++++..+++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~----~~~~~~~~l-------------------~V~nLp~~~te   61 (135)
T 2lea_A            6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP----PDVEGMTSL-------------------KVDNLTYRTSP   61 (135)
T ss_dssp             ------------------------------CCSCCSC----SSGGGCCCE-------------------EEECCCSSCHH
T ss_pred             cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC----CCCCCCCEE-------------------EEeCCCCCCCH
Confidence            45666777777777777 66655555431 1111111    111111222                   89999999999


Q ss_pred             HHHHHHHHhhcccccccCC
Q psy633           96 STLLKFYALYKQATVGQCN  114 (300)
Q Consensus        96 ~~~~~~~~~~k~~~~g~~~  114 (300)
                      +++.++|..|+.+......
T Consensus        62 ~~L~~~F~~~G~i~~v~i~   80 (135)
T 2lea_A           62 DTLRRVFEKYGRVGDVYIP   80 (135)
T ss_dssp             HHHHHHHGGGSCCSEEECC
T ss_pred             HHHHHHHHhcCCEEEEEEE
Confidence            9999999999987655443

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.27  E-value=0.16  Score=35.17  Aligned_cols=39  Identities=26%  Similarity=0.529  Sum_probs=34.1

Q ss_pred             CeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633           16 GFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        16 Gfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +=|+|+|.+.+.++++++...|.|+|-++.|....++..
T Consensus        48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~   86 (104)
T 2dhx_A           48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAP   86 (104)
T ss_dssp             TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCC
T ss_pred             CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCc
Confidence            457999999999999998889999999999988776643

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=91.29  E-value=0.16  Score=35.55  Aligned_cols=33  Identities=9%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             eEEEEecChHHHHHHH-hcCCceecCccceecCC
Q psy633           17 FGFVTFQNKEAVDKVF-STDSHVLEGSRLSIQPS   49 (300)
Q Consensus        17 fgfv~f~~~~~~~~a~-~~~~~~~~g~~~~v~~a   49 (300)
                      =++|+|.|...|.+|. .++|.+|+||+|++...
T Consensus        64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv   97 (117)
T 2l9w_A           64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI   97 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred             ceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence            4899999998888886 59999999999998653

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=86.19  E-value=0.54  Score=32.79  Aligned_cols=29  Identities=10%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             hhcccccC-CChHHHHHHHHhhcccccccC
Q psy633           85 YLPSLVKK-LDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        85 ~v~~~~~~-~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      ||++++.. ++++++.++|..|+.+.....
T Consensus        31 ~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i   60 (110)
T 1wf1_A           31 FIGNLNTALVKKSDVETIFSKYGRVAGCSV   60 (110)
T ss_dssp             EECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred             EEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence            89999999 999999999999998765443

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=84.96  E-value=0.3  Score=37.06  Aligned_cols=32  Identities=9%  Similarity=0.135  Sum_probs=27.0

Q ss_pred             hhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      ..||++|+..++++++..+|..|+.+......
T Consensus        74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~  105 (165)
T 1rk8_A           74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN  105 (165)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEE
Confidence            34999999999999999999999987655543

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=84.85  E-value=0.8  Score=33.16  Aligned_cols=38  Identities=16%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             cCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633           15 KGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        15 rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      .++-.|+|+++.+|.+|+..+|..|+|..|-|.+..+.
T Consensus        62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~   99 (132)
T 3p3d_A           62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKD   99 (132)
T ss_dssp             TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHH
T ss_pred             CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHH
Confidence            35679999999999999999999999999999887543

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=82.32  E-value=0.98  Score=31.27  Aligned_cols=35  Identities=9%  Similarity=0.059  Sum_probs=31.2

Q ss_pred             EEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           18 GFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        18 gfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      -.|.|.++++|.+|-. +++..++|+.++|-.+++-
T Consensus        49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~   84 (104)
T 1wey_A           49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred             EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence            3689999999999977 9999999999999998854

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=81.94  E-value=0.6  Score=34.41  Aligned_cols=22  Identities=14%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             hhcccccCCChHHHHHHHHhhc
Q psy633           85 YLPSLVKKLDSSTLLKFYALYK  106 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k  106 (300)
                      ||++|+...+++++.++|..|+
T Consensus        50 fV~nLp~~~te~dL~~~F~~~G   71 (139)
T 2hgn_A           50 HMRGLPYKATENDIYNFFSPLN   71 (139)
T ss_dssp             ECCSCCTTCCHHHHHHHHCSCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcC
Confidence            8999999999999999999999

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=81.06  E-value=1.2  Score=29.83  Aligned_cols=30  Identities=13%  Similarity=-0.082  Sum_probs=25.4

Q ss_pred             hhhcccccCCChHHHHHHHHhhc-ccccccC
Q psy633           84 DYLPSLVKKLDSSTLLKFYALYK-QATVGQC  113 (300)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~k-~~~~g~~  113 (300)
                      .||++++..++++++.++|..|+ .+.....
T Consensus         4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i   34 (91)
T 2lxi_A            4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRL   34 (91)
T ss_dssp             EEEETCCSSCCHHHHHHHHHHHTCCCSBCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE
Confidence            38999999999999999999998 6655444

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.40  E-value=0.78  Score=31.99  Aligned_cols=31  Identities=6%  Similarity=-0.043  Sum_probs=27.2

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ||++++..++++++.++|..|+.+....+..
T Consensus        20 fV~nLp~~vte~dL~~lF~~fG~V~~v~i~~   50 (105)
T 1sjq_A           20 HIRKLPIDVTEGEVISLGLPFGKVTNLLMLK   50 (105)
T ss_dssp             EECSCCTTSCHHHHHHHHHHHCCEEEEEEET
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence            8999999999999999999999887665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1hbka_	89	a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium	7e-29
d1hb6a_	86	a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t	5e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	5e-05
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	1e-04
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	1e-04
d1u2fa_	90	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-04
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-04
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	5e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	0.001
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	0.002

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

 Score =  103 bits (259), Expect = 7e-29
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 74  NMEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 131
           +M   F +   ++  L +   L +   L  Y  YKQ+T+G CNI +PS +    + KY A
Sbjct: 1   HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60

Query: 132 WNSLGQMAKSEAMSKYIALLNEVDAGWED 160
           W S+  + + +A  +Y+ +++E+   W+D
Sbjct: 61  WKSVENLNREDAQKRYVDIVSEIFPYWQD 89

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.7 bits (233), Expect = 5e-25
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 76  EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 135
           +  F++A + +  L  K     +L  Y+ YKQATVG  N ++P   + + K+K++AWN L
Sbjct: 2   QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNEL 61

Query: 136 GQMAKSEAMSKYIALLNEVDAGW 158
              +K +AM  YI  + E+   +
Sbjct: 62  KGTSKEDAMKAYIDKVEELKKKY 84

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 1e-13
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N   E G   L  A ++ HL +VQ L+E+   ++N TDSDG   L  A  ++   + E
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 289 YLVNSGA 295
            L   GA
Sbjct: 271 LLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEHTDLIEYLVN 292
           + L  A     + +VQ L+E  GA+VN  + +G +  L  A  +   D++E L+ 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 7e-13
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 6/202 (2%)

Query: 94  DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNE 153
           D +T L    L ++  +    +   +   +  KS+ +A +          M   +     
Sbjct: 73  DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL 132

Query: 154 VDAGWEDKEQEEINWDESQESGSKENEG-----QTKGWVNVSSMINDESQLDDNEKNIYE 208
                E              +  ++          KG          +       +    
Sbjct: 133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 192

Query: 209 WAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 268
           +A +     +VK L   K  N ++ DE+G   +  A   G ++VV +LI++ GA V   D
Sbjct: 193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVD 251

Query: 269 SDGDYGLDYAKAIEHTDLIEYL 290
           +        A+A  H ++++  
Sbjct: 252 ATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-------GADVNVTD 268
             + + +T+ +  NI     +    LHW       +  + LI          GADVN  D
Sbjct: 14  YAITEPITR-ESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD 71

Query: 269 SDGDYGLDYAKAIEHTD 285
            D +  L  A       
Sbjct: 72  CDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
              +     G   LH+A    ++ +V++L+ + G++ +  D DG   +  A      +++
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 288 EYLVNSGA 295
            YL+  GA
Sbjct: 238 MYLIQQGA 245

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 200 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           +D +  I   A+EG++++ V  L + +  ++  +D         A    H  +V  + ++
Sbjct: 219 EDGKTPIMLAAQEGRIEV-VMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVD-IFDR 275

Query: 260 C 260
           C
Sbjct: 276 C 276

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 269
           +  G L + VK L + +  + N  +      LH A   GH +V ++L++   A VN    
Sbjct: 8   SFMGHLPI-VKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAK 64

Query: 270 DGDYGLDYAKAIEHTDLIEYLVNSGAH 296
           D    L  A  I HT++++ L+ + A+
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 8e-11
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
            ++N   + G + LH A  +GH  +V  L++  GA  N   SDG   L  AK + +  + 
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVT 379

Query: 288 EYL 290
           + L
Sbjct: 380 DVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 6e-10
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           LH A   GHL +V++L+++ GA  NV++   +  L  A    HT++ +YL+ + A
Sbjct: 4   LHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 3/170 (1%)

Query: 123 MEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQ 182
           ++ K+K NA     Q     A       + ++                +    +      
Sbjct: 53  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 183 TKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLH 242
                 +    +           ++  AK GK+ +  + L + +D + N   +NGL  LH
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV-AELLLE-RDAHPNAAGKNGLTPLH 170

Query: 243 WACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
            A    +L +V+ L+ + G   +    +G   L  A      ++   L+ 
Sbjct: 171 VAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 16/235 (6%)

Query: 51  SHNSQVKKKIETKETASFSRMAENMEDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQAT 109
                         T       +N  +       Y  S   + +   T L   A    A 
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 245

Query: 110 VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWD 169
           +    + K +  N+  KS     + + Q          I     VDA             
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 305

Query: 170 ESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN 229
                   +   Q +  VN                +    A +     +V  L K    +
Sbjct: 306 HYGNIKLVKFLLQHQADVNAK---------TKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 355

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHL--IEKCGADVNVTDSDGDYGLDYAKAIE 282
            N++  +G   L  A   G++ V   L  +    + V V+D    + + + + ++
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK---HRMSFPETVD 407

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 40/135 (29%)

Query: 200 DDNEKNIYEW------AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVV 253
             N  N+         A+ G  ++  K L +     +N   ++    LH A   GH  +V
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEV-AKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 254 QHLIEK--------------------------------CGADVNVTDSDGDYGLDYAKAI 281
           + L+E                                   A        G   L  A   
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 282 EHTDLIEYLVNSGAH 296
               + E L+   AH
Sbjct: 143 GKVRVAELLLERDAH 157

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
            ++     G   LH A   G++K+V+  + +  ADVN     G   L  A    HTD++ 
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKF-LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

Query: 289 YLVNSGA 295
            L+ +GA
Sbjct: 348 LLLKNGA 354

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 8/178 (4%)

Query: 104 LYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQ 163
           +   +     +    S           + N+         +      L   D+       
Sbjct: 127 VKHGSNRLYGDNMGESCLVK----AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 182

Query: 164 EEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLT 223
             I         +            +    N   Q   NEK      K G+    + +  
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

Query: 224 KLKDF---NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
            LK      +N  D NG  CL+ A   G++ +V  L++  GAD  + +  G   +D+ 
Sbjct: 243 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 9e-09
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 188 NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QLDENGLNCLHWACD 246
             +   N  S+   + +     + +  L  +          N+N  +DE+G   LHW   
Sbjct: 58  LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTS 116

Query: 247 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 278
             +L++V+HL++  G++    D+ G+  L  A
Sbjct: 117 IANLELVKHLVKH-GSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK-- 259
           +       A +  LD+L+  + K ++  I        +  +         ++++L  K  
Sbjct: 188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 247

Query: 260 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
               +N  DS+GD  L+ A  + +  +++ L++ GA
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 8e-09
 Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 22/184 (11%)

Query: 120 WYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKEN 179
           W N+          SL  ++  EA+  ++     ++   +                +  N
Sbjct: 24  WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ----------LLCLYYAHYN 73

Query: 180 EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML--VKQLTKLKDFNINQLDENG 237
               + W +         +   +E   +  A  G    L  +  L    D  +  +    
Sbjct: 74  RNAKQLWSDA------HKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKVIQAEN 126

Query: 238 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD--GDYGLDYAKAIEHTDLIEYLVNSGA 295
                 A + GHL V+  L E       +        +    A    H  ++  L     
Sbjct: 127 YQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 296 HSSN 299
             + 
Sbjct: 186 TEAT 189

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 189 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 248
              +    ++L +          +G  D        L   +        L  L    D  
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFD--------LVTKSECLQGFYMLRNLIRRNDEV 290

Query: 249 HLKVVQHLIE----KCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
            L  ++ L+     K  A       D +  L  A  + +      L++
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG--ADVNVT 267
           A+ G L +L +         +  +     +    A + GHL V+  L E     A   + 
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

Query: 268 DSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT 300
             +       A    H ++I +L++     +  
Sbjct: 194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
             +N  D+ G   L  A   GH      L+EK GA+ ++ D+ G    D A    +  + 
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVK 219

Query: 288 EYLVNSGAHS 297
           ++ +N+   +
Sbjct: 220 KFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH 296
           LH AC       VQ L+    + +   D DG   L ++ + +  ++  +L++   +
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
             E +    V++L   K   + Q D++G   LHW+      ++   L+ K
Sbjct: 8   CMENEFFK-VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 1/185 (0%)

Query: 103 ALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKE 162
            L+        ++ +       +    +           E  S          A     +
Sbjct: 43  PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

Query: 163 QEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQL 222
            E  N+D         N    +    +     D   +D                + + QL
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162

Query: 223 TKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
                 N+N    +G + LH A  RG L +V+ L+   GAD ++ +   D  L  A++  
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRR 221

Query: 283 HTDLI 287
             D++
Sbjct: 222 VIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 235 ENGLNCLHWACDRGHLKVVQHLIE---KCGADVNVTDSDGDYGLDYA 278
           E+G   LH A  +G+L  V  L+    + G ++++ ++     L  A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 7/139 (5%)

Query: 152 NEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAK 211
             ++   +++   +    E+     +    +       S  IND          ++  A 
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208

Query: 212 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
           +G  ++L         +++N  D +G   LH A   G  +  + L+E    D+   +  G
Sbjct: 209 KGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVG 265

Query: 272 DYGLDYAKAIEHTDLIEYL 290
               D A      D++ YL
Sbjct: 266 QTAFDVADE----DILGYL 280

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 210 AKEGKLDMLVKQLTKLKDFNINQLDEN-------GLNCLHWACDRGHLKVVQHLIEKCGA 262
           AK+ + + L + +    D     +                 AC  G  + V  L+E+ GA
Sbjct: 6   AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GA 64

Query: 263 DVNVTDSDGDYGLDYAKAIEHTDLIEY 289
           D+N  + DG   L  A   ++ D++++
Sbjct: 65  DINYANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
            N  +  ++G   LH A  +G+ +V++ LI+    DVN+ D DG   L  A      +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 288 EYLVNSGA 295
             LV +  
Sbjct: 249 RILVENLC 256

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
             LH A +     V++ L++  GAD       G   L  A    +  L   L   GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 230 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGLDYA 278
              + E+G   LH A    H   +  L+    A    +++ +  G   L  A
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLA 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
            + N  D  G   LH ACD   ++  + L+ + GA + + + +    L  AK      ++
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAKG-GLGLIL 217

Query: 288 EYLV 291
           + +V
Sbjct: 218 KRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
            +N +++NG   LH+A  +   ++   L+E  GA+ +  D      +  A A  +  +I 
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIH 153

Query: 289 YL 290
            L
Sbjct: 154 IL 155

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 33/124 (26%)

Query: 205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG---------------- 248
            +   A  GKL+ L + +   K     + D++    LHWAC  G                
Sbjct: 6   MVCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 249 ----------------HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 292
                               +   +   GA VN  + +G   L YA +    ++   L+ 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 293 SGAH 296
            GA+
Sbjct: 125 GGAN 128

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 206 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 265
           ++  A + + ++    L +    N +  D      +H A  +G+LK++  L+       N
Sbjct: 107 LHYAASKNRHEI-AVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-STN 163

Query: 266 VTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           + D++G+  L  A   E  +  + LV+ GA
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGA 193

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 5/188 (2%)

Query: 103 ALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVDAGWEDKE 162
           +L+  A   + +  K         +  +        A   A +  +  +   +       
Sbjct: 26  SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA 85

Query: 163 QEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQL 222
           +          +     EG  +  +   + IN      DN             +     +
Sbjct: 86  RMHDGTTPLILAARLAIEGMVEDLITADADINAA----DNSGKTALHWAAAVNNTEAVNI 141

Query: 223 TKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIE 282
             +   N +  D+     L  A   G  +  + L++   A+  +TD       D A    
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERL 200

Query: 283 HTDLIEYL 290
           H D++  L
Sbjct: 201 HHDIVRLL 208

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-06
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 239 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 273
           N L  A  RG L+ +  L++    +VN  +  G  
Sbjct: 3   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRT 36

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/102 (12%), Positives = 25/102 (24%)

Query: 158 WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDM 217
                 +  +             G       +     D +  D+        A +     
Sbjct: 54  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 113

Query: 218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 259
           +V+ L K    N+   +  G      A   G  +VV  +   
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 241 LHWACDRGHLKVVQHLIEKCGADVNVTDSDG 271
           L  A  RG ++ V+ L+ +     +  +  G
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFG 36

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 228 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 287
            ++N  D  G   +H A   GH  VV  L  +  +D++  D+ G   L+ A      DL+
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLV 149

Query: 288 EYLVN 292
           + L  
Sbjct: 150 DILQG 154

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 202 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 261
           N       A       +V+ L  L      Q   NG   LH A D  +  +V  L+ KCG
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCG 168

Query: 262 ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA 295
           ADVN     G            T + + L     
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKC---GADVNVTDSDGDYGLDYAKAIEH 283
           +G + LH A       +   +I +     A +N  ++     L  A     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ 55
            D  TG SKGFGFV F   E   KV S   H+++G     +  +S  SQ
Sbjct: 41 KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQ 89

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
          M D NT  S+GFGFVT+   E VD   +   H ++G  +  + + S
Sbjct: 39 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 84

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          M D  T  S+GFGFVTF ++  VDKV +   H L+   +  +
Sbjct: 33 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ-PSD 50
          +        K F F+ F++ +   +  + D  + +G  L I+ P D
Sbjct: 39 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 84

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 39/134 (29%)

Query: 206 IYEWAKEGKLDMLVKQLTKLKDFN----INQLDENGLNCLHWAC---DRGHLKVVQHLIE 258
           + E  K   +  L++      D      +    E     LH A    DR  L +V  L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 259 --------------------------------KCGADVNVTDSDGDYGLDYAKAIEHTDL 286
                                           +  A + + +  G+  LD AK ++H   
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 287 IEYLVNSGAHSSNT 300
            E L  + +   N+
Sbjct: 130 EELLTQALSGRFNS 143

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
           +  +  D  T   +GF F+TF+ +E V K+     H +  S+  I+
Sbjct: 27 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 236 NGLNCLHWACDRGHLKVVQHLIEKCGADVN-VTDSDGDYGLDYAKAIE--HTDLIEYLVN 292
           +G   LH A    +++V + L+E  GA V  +T SD     D  + +E  +T   ++L  
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 293 SGA 295
              
Sbjct: 125 VQE 127

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 47
          ++ ++  D  TG S+GFGFV F+  E+VDKV     H L G  +  +
Sbjct: 27 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 73

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 1  MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 51
           +  VM D  +  S+GFGFVTF +   VD   +   H ++G  +  + + +
Sbjct: 48 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 98

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 229 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 288
           ++N  D   +  LHWA +  H +VV+ L+ K GADV+          D +    + DL E
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

Query: 289 YL 290
            L
Sbjct: 151 IL 152

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 1  MNASVMFDKN-TGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQPSDS 51
              +      TG  +GFGFV F  K+   K F+    S  L G RL ++ +DS
Sbjct: 36 KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 89

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 6  MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNSQVKKKIETKE 64
          +   NT  ++G  +V +++               +    L +   +++ +  K   + KE
Sbjct: 37 IRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKE 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1hbka_	89	Acyl-CoA binding protein {Plasmodium falciparum [T	99.88
d1hb6a_	86	Acyl-CoA binding protein {Cow (Bos taurus) [TaxId:	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.82
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.8
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.75
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.74
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.73
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.72
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.72
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.72
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.71
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.71
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.69
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.69
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.66
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.65
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.65
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.64
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.62
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.6
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.56
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.47
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.39
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.38
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.38
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.37
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.35
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.34
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.31
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.31
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.31
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.3
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.29
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.29
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.28
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.27
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.27
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.25
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.25
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.24
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.23
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.22
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.19
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.19
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.18
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.17
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.17
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.17
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.16
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.16
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.16
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.15
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.13
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.13
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.13
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.11
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.09
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.03
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.03
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.0
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.0
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.0
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.0
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.99
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.98
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.96
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.95
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.95
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	98.93
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.93
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.92
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.9
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.89
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.88
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.86
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.83
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.78
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.78
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.78
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.77
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.77
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.76
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.75
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.72
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.71
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.68
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.68
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.62
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.61
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.61
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.57
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.57
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	98.57
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.51
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.51
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.46
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.37
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.32
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.3
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.29
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.22
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.06
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.05
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	97.92
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.54
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.29
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	92.51
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	92.04
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	90.87
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	90.52
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	89.89
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	87.11
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	86.7
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	85.29
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	84.78
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	84.33
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	84.28
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	83.31
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	81.85
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	81.1
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	80.39

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.88  E-value=9.5e-23  Score=138.40  Aligned_cols=86  Identities=30%  Similarity=0.681  Sum_probs=81.2

Q ss_pred             hhhHHHHHhhhhccccc--CCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy633           75 MEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLN  152 (300)
Q Consensus        75 l~~~F~~a~~~v~~~~~--~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~  152 (300)
                      |++.|+.|+.++++++.  .++++++++||++|||+++|+|+.++|+++++.+++||+||.++++|+.++||+.||++++
T Consensus         2 L~~~F~~A~~~v~~~~~~~~~~~~~~L~lY~lyKQat~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~~Yi~~v~   81 (89)
T d1hbka_           2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVS   81 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            57889999999998864  5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCch
Q psy633          153 EVDAGWED  160 (300)
Q Consensus       153 ~l~~~~~~  160 (300)
                      ++.|.|.+
T Consensus        82 ~l~p~w~~   89 (89)
T d1hbka_          82 EIFPYWQD   89 (89)
T ss_dssp             HHCTTTTC
T ss_pred             HHcccccC
Confidence            99999953

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.7e-23  Score=138.94  Aligned_cols=83  Identities=33%  Similarity=0.607  Sum_probs=80.0

Q ss_pred             hhHHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q psy633           76 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLNEVD  155 (300)
Q Consensus        76 ~~~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~~~~~a~~~yi~~v~~l~  155 (300)
                      +..|++|+.+|+++...++++++++||++|||+++|+|+.++|+++++.+++||+||.++++|+.++||+.||++++++.
T Consensus         2 ~~~F~~A~~~v~~~~~~~~~~~~L~LYalyKQat~Gd~~~~~P~~~~~~~~aKw~AW~~~~gms~~eA~~~YI~~v~~l~   81 (86)
T d1hb6a_           2 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELK   81 (86)
T ss_dssp             HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy633          156 AGW  158 (300)
Q Consensus       156 ~~~  158 (300)
                      +.|
T Consensus        82 ~k~   84 (86)
T d1hb6a_          82 KKY   84 (86)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1e-22  Score=149.33  Aligned_cols=95  Identities=27%  Similarity=0.340  Sum_probs=87.8

Q ss_pred             chHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633          204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH  283 (300)
Q Consensus       204 ~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~  283 (300)
                      .|||++|+..+...++++|++ .|++++.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhcccccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCc
Confidence            378999988777777777777 799999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCC
Q psy633          284 TDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       284 ~~iv~~Ll~~ga~~~~~  300 (300)
                      .+++++|+++|||++.+
T Consensus        81 ~~~v~~Ll~~Gad~~~~   97 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVK   97 (118)
T ss_dssp             CHHHHHHHTTCCCSSSS
T ss_pred             hhhhhhhhcccccceee
Confidence            99999999999999863

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-22  Score=149.22  Aligned_cols=93  Identities=26%  Similarity=0.317  Sum_probs=79.7

Q ss_pred             hHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcH
Q psy633          205 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT  284 (300)
Q Consensus       205 t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~  284 (300)
                      ++|+.|+..+..++++.|.+ .|++++.+|..|+||||+||..|+.+++++|++ .|++++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~-~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCccccccccccccccccccccccccccccc-cccccccccccCcccccccchhhHH
Confidence            56777765444445555666 689999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCC
Q psy633          285 DLIEYLVNSGAHSSN  299 (300)
Q Consensus       285 ~iv~~Ll~~ga~~~~  299 (300)
                      +++++|+++||+++.
T Consensus        81 ~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          81 QVCKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHcCCCccc
Confidence            999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=8.7e-21  Score=145.25  Aligned_cols=97  Identities=19%  Similarity=0.295  Sum_probs=86.3

Q ss_pred             cCcCcchHHHHHHh---CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          199 LDDNEKNIYEWAKE---GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       199 ~~~~~~t~l~~a~~---~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      .+..|.||||+|+.   .+..+++++|++ .|++++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|+|||
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL  118 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPL  118 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHH-cCCChhhhhhhhccccccccccccccccccccc-cCccccccCCCCCCHH
Confidence            34568999999985   245566666666 699999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      |+|+..|+.+++++|++.++..
T Consensus       119 ~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         119 DIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999987653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=139.87  Aligned_cols=93  Identities=23%  Similarity=0.266  Sum_probs=82.4

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCc-hHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGL-NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +..+..|.|++|+|+.|+ ..++++|+. .|++++..+..|. ||||+||..|+.+++++|++ .|++++.+|..|+|||
T Consensus        30 n~~~~~g~t~l~~a~~g~-~~~v~~Ll~-~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~G~T~l  106 (125)
T d1bi7b_          30 NAPNSYGRRPIQVMMMGS-ARVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPV  106 (125)
T ss_dssp             TCCCSSSCCTTTSSCTTC-HHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHH
T ss_pred             cccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccCCCCCHH
Confidence            445678899999887665 456677777 6999999998865 69999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHH
Q psy633          276 DYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~  292 (300)
                      |+|+.+|+.+++++|++
T Consensus       107 ~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         107 DLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCHHHHHHHSS
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            99999999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-21  Score=154.51  Aligned_cols=150  Identities=17%  Similarity=0.171  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-ccc---CCcccCcCcchHHHHHHhCCHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIN---DESQLDDNEKNIYEWAKEGKLDM  217 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~---~~~~~~~~~~t~l~~a~~~~~~~  217 (300)
                      +|..+.+++++.+......      ............+.++..|+..+.. ++.   +.+..+..|.||||+|+..+..+
T Consensus        44 Aa~~g~~e~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e  117 (223)
T d1uoha_          44 ACSAGHTEIVEFLLQLGVP------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE  117 (223)
T ss_dssp             HHHHTCHHHHHHHHHHTCC------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHhhhhcccccccccccc------cccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHH
Confidence            5666666666655443222      0111112233344555555542222 222   23556778889999888777677


Q ss_pred             HHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          218 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       218 v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ++++|.+ .|++++..+..|.||||+|+..++.+++++|+. .+.+++.+|..|+||||+|+..|+.++|++|++.|||+
T Consensus       118 ~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         118 IAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI  195 (223)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCC
Confidence            7777777 788898888889999999999999999999988 89999999999999999999999999999999999988


Q ss_pred             CC
Q psy633          298 SN  299 (300)
Q Consensus       298 ~~  299 (300)
                      +.
T Consensus       196 ~~  197 (223)
T d1uoha_         196 YI  197 (223)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.3e-20  Score=140.54  Aligned_cols=146  Identities=16%  Similarity=0.079  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC---CcccCcCcchHHHHHHhCCHH
Q psy633          140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ..+|+.+.++.|+.++.....    +++.. +..+.+++|.|+..+...+..++..   .+..+..+.+|++.++..+..
T Consensus         7 ~~Aa~~g~~~~vk~lL~~~~~----~~n~~-d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           7 SGAAARGDVQEVRRLLHRELV----HPDAL-NRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC----CTTCC-CTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHhCCC----CCCcc-CCCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            357888899999988754211    12222 2345677888876544444444422   345667789999999988888


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  293 (300)
                      .+.+++.. .+++++.+|..|+||||+||..|+.+++++|+  .|++++.+|..|+||||+|+..|+.+|+++|+++
T Consensus        82 ~~~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~--~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH--TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-cccccccccCCCCeeecccccccccccccccc--ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88888888 79999999999999999999999999999876  5899999999999999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.8e-20  Score=136.05  Aligned_cols=118  Identities=21%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccCCcccCcCcchHHHHHHhCCHHHHH
Q psy633          140 KSEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLV  219 (300)
Q Consensus       140 ~~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~v~  219 (300)
                      ..++..+.+++++.|+....+                                   .+..+..|+||||+|+..+...+.
T Consensus         6 ~~A~~~G~~~~v~~Ll~~g~d-----------------------------------~n~~d~~g~t~Lh~A~~~~~~~~~   50 (130)
T d1ycsb1           6 LDSSLEGEFDLVQRIIYEVDD-----------------------------------PSLPNDEGITALHNAVCAGHTEIV   50 (130)
T ss_dssp             HHHHHHTCHHHHHHHTSTTSS-----------------------------------CCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-----------------------------------cccccccccccccccccccccccc
Confidence            347778888888888766433                                   245677899999999998888888


Q ss_pred             HHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCC-CCCcHHHHH--HhcCcHHHHHHHHHcC
Q psy633          220 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYA--KAIEHTDLIEYLVNSG  294 (300)
Q Consensus       220 ~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~-~g~TpL~~A--~~~g~~~iv~~Ll~~g  294 (300)
                      ++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++..+. .|+||++++  +..|+.+|+++|++.+
T Consensus        51 ~~ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          51 KFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccccc-cccccccccccCcccccccchhhHHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            88887 799999999999999999999999999999999 9999998874 688987766  5779999999999754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.2e-20  Score=139.81  Aligned_cols=141  Identities=20%  Similarity=0.199  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .+|+.+.+++++.|+....+     ..  ....+.+++|.|+..+.......+..    ....+..+.++++.++.....
T Consensus         8 ~Aa~~g~~~~v~~LL~~ga~-----~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           8 EAARAGQDDEVRILMANGAP-----FT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-----CC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHCCCHHHHHHHHHcCCC-----cc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47889999999999876544     11  23455678998888877632222211    233455667788887776666


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      .+.+++.. .+.+++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccc-cCCccccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            67777777 799999999999999999999999999999999 9999999999999999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.7e-19  Score=147.20  Aligned_cols=99  Identities=21%  Similarity=0.161  Sum_probs=88.8

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccc-cCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ-LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      +..+..|.||||+|+..+..+++++|.. .+++++. .+..|.||||+|+..|+.+++++|++ +|++++.+|..|+|||
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L  229 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPL  229 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             ccccccCcccccccccccccccccchhc-ccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence            4567889999999998777777777776 5777765 46679999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCC
Q psy633          276 DYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      |+|+.+|+.+++++|+++||+-
T Consensus       230 ~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         230 GSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-19  Score=133.14  Aligned_cols=95  Identities=19%  Similarity=0.106  Sum_probs=83.2

Q ss_pred             cchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCC-cHHHHHHhc
Q psy633          203 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYAKAI  281 (300)
Q Consensus       203 ~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~-TpL~~A~~~  281 (300)
                      +.++||+|+..+..+++++|++ .|++++.+|..|.||||+|+ .|+.+++++|++ .|++++.+|..|. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHH-cCCccccccccccccccccc-cccccccccccc-ccccccccccccccccccccccc
Confidence            4578888877555666666666 69999999999999999775 799999999999 9999999998876 699999999


Q ss_pred             CcHHHHHHHHHcCCCCCCC
Q psy633          282 EHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       282 g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |+.+++++|+++|++++.+
T Consensus        80 g~~~~v~~Ll~~ga~~~~~   98 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVR   98 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCC
T ss_pred             ccccccccccccccccccc
Confidence            9999999999999998863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-19  Score=149.29  Aligned_cols=127  Identities=23%  Similarity=0.343  Sum_probs=102.4

Q ss_pred             cCCCCCccCcccccee-eeecccC----CcccCcCcchHHHH----HHhCCHHHHHHHHhhcCCCCccccCcCCchHHHH
Q psy633          173 ESGSKENEGQTKGWVN-VSSMIND----ESQLDDNEKNIYEW----AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHW  243 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~-~~~~~~~----~~~~~~~~~t~l~~----a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~  243 (300)
                      .+.++++.|+..|... +..++..    .+..+..+.+++..    +..++...+.+.|++ .|++++.++..|.||||+
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccch
Confidence            3456778888888753 2223221    33445556555443    334677888888888 799999999999999999


Q ss_pred             HHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          244 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       244 A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |+..|+.+++++||+..|+++|.+|.+|.||||+|+.+|+.++|++|+++|||+|+.
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999998569999999999999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.1e-20  Score=136.79  Aligned_cols=82  Identities=23%  Similarity=0.267  Sum_probs=74.4

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|+||||+|+..+...+.++|.. .|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus        29 n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          29 NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTALE  106 (118)
T ss_dssp             CCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHT-TCCCSSSSSSSTCCCCC
T ss_pred             cccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCchhhhhhhhc-ccccceeeCCCCCCHHH
Confidence            4556789999999988777777888777 799999999999999999999999999999999 99999999999999999


Q ss_pred             HHHh
Q psy633          277 YAKA  280 (300)
Q Consensus       277 ~A~~  280 (300)
                      +|..
T Consensus       107 ~a~~  110 (118)
T d1myoa_         107 ATDN  110 (118)
T ss_dssp             TCSS
T ss_pred             HHhH
Confidence            9843

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=131.87  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .+|..+.++.|+.|+....+     ++. .+..+.+++|.|+ .|+. .+..++..   .+..+..+.++++.++..+..
T Consensus         7 ~Aa~~g~~~~v~~Ll~~g~d-----~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           7 SAAARGDLEQLTSLLQNNVN-----VNA-QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHTCHHHHHHHTTSCCC-----TTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-----cCc-cCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            48999999999999988655     222 2345668898776 4655 33333333   345677889999998887777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  294 (300)
                      .....+.. .+.+++..+..|.+|||+|+..++.+++++|+++.+.+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            77777777 689999999999999999999999999999999444589999999999999999999999999999988

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-18  Score=140.88  Aligned_cols=152  Identities=20%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      ..|..+.++.|++++.....    . ....+..+.+++|.|+..|+..+..++..    ....+..+.++++.++..++.
T Consensus         9 ~~a~~G~~~~v~~~l~~~~~----~-~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           9 NLAYSGKLEELKESILADKS----L-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             HHHHTTCHHHHHHHHHHCGG----G-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhCCC----c-CcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            35666777777776543211    1 12233456788999999998744444332    344456677888888887777


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .+.++|.. .+++++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|++
T Consensus        84 ~i~~~Ll~-~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          84 EIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             chhHHHhc-cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            77888887 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       162 i~~  164 (223)
T d1uoha_         162 TNI  164 (223)
T ss_dssp             SCC
T ss_pred             eee
Confidence            875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=9.2e-18  Score=134.41  Aligned_cols=92  Identities=22%  Similarity=0.250  Sum_probs=84.8

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      +..+..|.|+++.++..+...+...+.. .+.+++..|..|.||||+||..|+.++|++||+ .|++++.+|..|+||||
T Consensus       117 ~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         117 NAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRD  194 (209)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cccCCCCCCcchhhcccCcceeeeeecc-ccccccccccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHH
Confidence            4456778999999988777777787777 789999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHH
Q psy633          277 YAKAIEHTDLIEYL  290 (300)
Q Consensus       277 ~A~~~g~~~iv~~L  290 (300)
                      +|+++|+.+||++|
T Consensus       195 ~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         195 VASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHhhc
Confidence            99999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.3e-17  Score=125.95  Aligned_cols=90  Identities=18%  Similarity=0.297  Sum_probs=78.2

Q ss_pred             HHHHhCCHHHHHHHHhhcCCCCcccc------CcCCchHHHHHHH---CCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy633          208 EWAKEGKLDMLVKQLTKLKDFNINQL------DENGLNCLHWACD---RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA  278 (300)
Q Consensus       208 ~~a~~~~~~~v~~ll~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A  278 (300)
                      .++..++...+.+++..  |.+++..      +..|+||||+|+.   .|+.++|++|++ .|+++|.+|..|+||||+|
T Consensus        12 ~Av~~~dl~~l~~~~~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1          12 EAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHc--CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH-cCCChhhhhhhhccccccc
Confidence            34456888888887766  7766554      6779999999996   478999999999 9999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCCCC
Q psy633          279 KAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       279 ~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      +..|+.+++++|+++||+++.+
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~  110 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIA  110 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccccCcccccc
Confidence            9999999999999999999863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.2e-18  Score=129.97  Aligned_cols=118  Identities=24%  Similarity=0.331  Sum_probs=100.0

Q ss_pred             CccCccccce-eeeeccc----CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHH
Q psy633          178 ENEGQTKGWV-NVSSMIN----DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV  252 (300)
Q Consensus       178 ~~~a~~~g~~-~~~~~~~----~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  252 (300)
                      ++.|+..|.. .+..++.    ..+..+..|+||||+|+.++.+.+..+|..  +.+++..+..|.+||+.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            5667777765 3333332    245678889999999998888777666654  89999999999999999999999999


Q ss_pred             HHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       253 v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ++++++ .|+++|.+|..|+||||+|+..|+.+++++|+ .|++++.
T Consensus        84 ~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~  128 (156)
T d1bd8a_          84 LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR  128 (156)
T ss_dssp             HHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC
T ss_pred             cccccc-cccccccccCCCCeeecccccccccccccccc-ccccccc
Confidence            999999 99999999999999999999999999999888 7888875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=4.5e-18  Score=143.30  Aligned_cols=152  Identities=18%  Similarity=0.135  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeeeccc-C---CcccCcCcchHHHHHHhCCHH
Q psy633          141 SEAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIN-D---ESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       141 ~~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~---~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      .+|..+.+++|+.|+....+     ++. ....+.++++.|+..|+..+..++. .   ....+..+.++|+.++..+..
T Consensus        46 ~A~~~G~~~~v~~Ll~~Gad-----vn~-~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          46 AACSSGDTEEVLRLLERGAD-----INY-ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHTCHHHHHHHHHHCCC-----TTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-----CCc-cCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccccc
Confidence            48888999999999876543     222 2234467888888888874333332 2   233455567777776654444


Q ss_pred             HHHHHHhhcCCCCc------------------------------------------------------------cccCcC
Q psy633          217 MLVKQLTKLKDFNI------------------------------------------------------------NQLDEN  236 (300)
Q Consensus       217 ~v~~ll~~~~~~~~------------------------------------------------------------~~~d~~  236 (300)
                      .+.+.|.. .+...                                                            ...+..
T Consensus       120 ~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         120 DIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             chhhcccc-cCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            44444443 23322                                                            223456


Q ss_pred             CchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          237 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       237 g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      |.||||+|+..|+.+++++|++ .|+++|.++..|+||||+|+..|+.++|++|+++|||++.+
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            8899999999999999999999 99999999999999999999999999999999999999863

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=7e-18  Score=139.35  Aligned_cols=97  Identities=18%  Similarity=0.200  Sum_probs=88.4

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHHHhhcCCCC---ccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN---INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      ..+.+|.||||+|+..+...++++|+. .|++   ++.+|..|.||||+||..|+.+++++|++ .|++++.+|..|.||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~-~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCcCCCCCCccchHHhhccccccccccc-ccccccccccccchh
Confidence            457889999999999888888888877 6766   67788999999999999999999999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCC
Q psy633          275 LDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      ||+|+..++.+++++|++.+..
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~  103 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPS  103 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCS
T ss_pred             hhhhhccCchHHHHHHHhhccc
Confidence            9999999999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.71  E-value=1.5e-17  Score=138.82  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=98.1

Q ss_pred             hcccccccCCCCCccCccccceeeeecc------------cCCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCcccc
Q psy633          166 INWDESQESGSKENEGQTKGWVNVSSMI------------NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL  233 (300)
Q Consensus       166 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~------------~~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~  233 (300)
                      ++..+...+.+++|.|+..|+..+...+            .+.+..|..|.||||+|+..+...++++|++ .|++++.+
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~  103 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY  103 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccc-cccccccc
Confidence            3444444577899999999987444332            1346678899999999998888888888888 79999988


Q ss_pred             CcCCchHHHHHHHCCCHHHHHHH---------------------------------------------------------
Q psy633          234 DENGLNCLHWACDRGHLKVVQHL---------------------------------------------------------  256 (300)
Q Consensus       234 d~~g~t~Lh~A~~~g~~~~v~~L---------------------------------------------------------  256 (300)
                      |..|.||||+|+..++.+++.++                                                         
T Consensus       104 ~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (277)
T d2fo1e1         104 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE  183 (277)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred             cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccc
Confidence            87777777666666655444333                                                         


Q ss_pred             -----------------------HhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          257 -----------------------IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       257 -----------------------l~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                                             +...+.+++.+|..|+||||+|+..|+.++|++|+++|||++.
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA  249 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence                                   2225667777788888888888888888888888888888865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=9e-19  Score=151.83  Aligned_cols=122  Identities=13%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             CCCCCccCccccceee----eecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccC--cCCchHHHHH
Q psy633          174 SGSKENEGQTKGWVNV----SSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD--ENGLNCLHWA  244 (300)
Q Consensus       174 ~~~~~~~a~~~g~~~~----~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d--~~g~t~Lh~A  244 (300)
                      +.++++.|+..|+..+    ..++..   .+..+..|+||||+|+..|+.+++++|.+ .|++++..+  ..|+||||+|
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhHHH
Confidence            3455777777777421    112222   34466677888888887777777777777 677777654  3477888888


Q ss_pred             HHCCCHHHHHHHHhhcCCCc---cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          245 CDRGHLKVVQHLIEKCGADV---NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       245 ~~~g~~~~v~~Ll~~~g~~~---~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      |..||.++|++|++ .|++.   +..+.+|.||||.|+.+||.++|++|++.||++
T Consensus       169 a~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         169 AENGHLHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             HHHhhHHHHHHHHH-cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            88888888888887 77654   334455667777777788888888888877764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-17  Score=134.35  Aligned_cols=125  Identities=23%  Similarity=0.275  Sum_probs=74.1

Q ss_pred             cCCCCCccCccccceeeeecccC----CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCC------ccccCcCCchHHH
Q psy633          173 ESGSKENEGQTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN------INQLDENGLNCLH  242 (300)
Q Consensus       173 ~~~~~~~~a~~~g~~~~~~~~~~----~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~------~~~~d~~g~t~Lh  242 (300)
                      .+.+++|.|+..|...+...+.+    .+..+..|.+||+.++..+...+.++|.. .+..      .......|.||||
T Consensus        38 ~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          38 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATNYNGHTCLH  116 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCccccccccccccccccccccccccccccccccccccccccccccccccchhhh-hcccccccccccccccccchhhh
Confidence            45566777776666533333222    23445566666666655444444444433 2221      1122233556666


Q ss_pred             HHHHCCCHHHHHHHHhhcCCCccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          243 WACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       243 ~A~~~g~~~~v~~Ll~~~g~~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      .|+..++.+++.+|+. .|+.++..+ .+|.||||+|+..|+.+++++|+++|||++.
T Consensus       117 ~a~~~~~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         117 LASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             HHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC
T ss_pred             HHhhcCChhheeeecc-cCcccccccccCCCCccccccccccHHHHHHHHhcCCcccc
Confidence            6666666666666666 677776665 4688888888888888888888888888775

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.8e-17  Score=139.53  Aligned_cols=37  Identities=27%  Similarity=0.447  Sum_probs=35.0

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          264 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       264 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      +|.+|..|+||||+|++.|+.++|++|+++|||+++.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            6889999999999999999999999999999999863

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.2e-17  Score=135.55  Aligned_cols=98  Identities=22%  Similarity=0.236  Sum_probs=82.8

Q ss_pred             cccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          197 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      ...+..|+|+||+|+..+...+.++|....+.+++.+|..|+||||+|+..|+.++|++||++.|++++.+|..|+||||
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~  211 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED  211 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGG
T ss_pred             cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            44677889999998876666666666662457889999999999999999999999999997469999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCC
Q psy633          277 YAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      +|+.   .+++++|+++|+|.
T Consensus       212 ~A~~---~~~~~~Ll~~g~d~  229 (229)
T d1ixva_         212 VALN---EQVKKFFLNNVVDA  229 (229)
T ss_dssp             GCSC---HHHHHHHHHHCCCC
T ss_pred             HHhh---HHHHHHHHHcCCCC
Confidence            9974   58999999999973

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=147.43  Aligned_cols=116  Identities=23%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             CCCCccCccccceeeeeccc----CCcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCH
Q psy633          175 GSKENEGQTKGWVNVSSMIN----DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHL  250 (300)
Q Consensus       175 ~~~~~~a~~~g~~~~~~~~~----~~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  250 (300)
                      .++++.++..+...+...+.    ..+..+..+.|+||.++..+...+.+++.. .|++++.+|..|.||||+|+..|+.
T Consensus       265 ~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~  343 (408)
T d1n11a_         265 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHT  343 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcCCH
Confidence            34566666666653333322    234456678899998888776667777777 7999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy633          251 KVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN  292 (300)
Q Consensus       251 ~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  292 (300)
                      ++|++||+ +||++|.+|.+|+||||+|+.+|+.++|++|..
T Consensus       344 ~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         344 DIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999 999999999999999999999999999987753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.3e-17  Score=131.78  Aligned_cols=154  Identities=19%  Similarity=0.120  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeee-eccc-----CCcccCcCcchHHHHHHhCCH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVS-SMIN-----DESQLDDNEKNIYEWAKEGKL  215 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~-~~~~-----~~~~~~~~~~t~l~~a~~~~~  215 (300)
                      ++..+..++++.|+....+.   ...........++.+.+...+...+. ..+.     .....+..+.++++.++..+.
T Consensus        41 A~~~g~~~iv~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  117 (229)
T d1ixva_          41 SVSFQAHEITSFLLSKMENV---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW  117 (229)
T ss_dssp             HHHTTCHHHHHHHHTTCTTC---CGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHcCCccccchhhhhhccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            56666777888887665431   11111122333445555555543211 1111     123356677899999888877


Q ss_pred             HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHhcCcHHHHHHHHH-c
Q psy633          216 DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN-S  293 (300)
Q Consensus       216 ~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g-~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~  293 (300)
                      ..+..+|.. .+...+..|..|+||||+|+..|+.+++++|++ .+ .+++.+|..|+||||+|+..|+.++|++|++ .
T Consensus       118 ~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~  195 (229)
T d1ixva_         118 FEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY  195 (229)
T ss_dssp             HHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhh-hcccccccCCCCCCccchhhhcccccccccccc-cccccccccccccCCchhhhcccccHHHHHHHHHhc
Confidence            788888887 799999999999999999999999999999999 65 7899999999999999999999999999997 5


Q ss_pred             CCCCCCC
Q psy633          294 GAHSSNT  300 (300)
Q Consensus       294 ga~~~~~  300 (300)
                      |||++.+
T Consensus       196 gad~~~~  202 (229)
T d1ixva_         196 GAEYDLV  202 (229)
T ss_dssp             CCCSCCC
T ss_pred             CCCCCCc
Confidence            9999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.6e-17  Score=141.42  Aligned_cols=93  Identities=25%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             chHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCc
Q psy633          204 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH  283 (300)
Q Consensus       204 ~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~  283 (300)
                      .||||.|+..|...++++|+. .|+++|..|..|+||||+||..|+.+++++||+ .|++++.+|..|+||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~-~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gadi~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCC
Confidence            389999887666666666666 699999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCC
Q psy633          284 TDLIEYLVNSGAHSS  298 (300)
Q Consensus       284 ~~iv~~Ll~~ga~~~  298 (300)
                      .+++++|+..++++.
T Consensus        79 ~~~~~~Ll~~~~~~~   93 (408)
T d1n11a_          79 TNMVKLLLENNANPN   93 (408)
T ss_dssp             HHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHhhhccc
Confidence            999999999887654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.3e-17  Score=124.72  Aligned_cols=122  Identities=22%  Similarity=0.226  Sum_probs=97.8

Q ss_pred             CCCccCccccce-eeeecccC--CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHH
Q psy633          176 SKENEGQTKGWV-NVSSMIND--ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV  252 (300)
Q Consensus       176 ~~~~~a~~~g~~-~~~~~~~~--~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  252 (300)
                      ++++.|+..|.. .+..++..  ....+..|.||||+|+..+...+...+.. ........+..+.+++++++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcccccCCCcccccccccccccccccccc-cccccccccccccccccccccccccee
Confidence            446777777776 33333333  22357788999999888766666666666 456666667778889999999999999


Q ss_pred             HHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q psy633          253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       253 v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      +++|+. .|++++.+|..|+||||+|+..|+.+++++|++.|+|++.
T Consensus        83 ~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~  128 (153)
T d1awcb_          83 VEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             eecccc-cCCccccccccCchHHHhhhhcchhheeeeccccccCCcc
Confidence            999999 9999999999999999999999999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.65  E-value=1.9e-16  Score=131.94  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=83.5

Q ss_pred             cccCcCcchHHHHHHhCCH-HHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy633          197 SQLDDNEKNIYEWAKEGKL-DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL  275 (300)
Q Consensus       197 ~~~~~~~~t~l~~a~~~~~-~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL  275 (300)
                      ...+..|.|+||.++..+. ..+..++.. .+.+++.+|..|+||||+|+..|+.++|++|++ .|+++|.+|..|+|||
T Consensus       181 ~~~~~~g~t~L~~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L  258 (277)
T d2fo1e1         181 DSEKYKGRTALHYAAQVSNMPIVKYLVGE-KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTAR  258 (277)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHH-SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHH
T ss_pred             cccccCCCCcccccccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHH
Confidence            4456778999998877554 444445666 789999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHc
Q psy633          276 DYAKAIEHTDLIEYLVNS  293 (300)
Q Consensus       276 ~~A~~~g~~~iv~~Ll~~  293 (300)
                      |+|+..|+.+||++|++.
T Consensus       259 ~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         259 QLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            999999999999999863

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=127.39  Aligned_cols=64  Identities=34%  Similarity=0.373  Sum_probs=58.3

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy633          236 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAHSSNT  300 (300)
Q Consensus       236 ~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  300 (300)
                      .|.++|+.|+..+...+++.++. .|.+++.+|..|.||||+|+..|+.+++++|+++|||++.+
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             chhhHHHHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            57788888888888888999998 99999999999999999999999999999999999998863

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.65  E-value=6e-19  Score=152.94  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             ccCcCcchHHHHHHhCCHHHHHHH---HhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccC--CCCC
Q psy633          198 QLDDNEKNIYEWAKEGKLDMLVKQ---LTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD--SDGD  272 (300)
Q Consensus       198 ~~~~~~~t~l~~a~~~~~~~v~~l---l~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d--~~g~  272 (300)
                      ..+..|.|+|++|+..|+..++++   |.. .|++++..|..|+||||+||..||.++|++|++ .|++++..+  .+|+
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~-~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHh-CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCC
Confidence            356678999999988776655544   566 799999999999999999999999999999999 999999876  4699


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCC
Q psy633          273 YGLDYAKAIEHTDLIEYLVNSGAHS  297 (300)
Q Consensus       273 TpL~~A~~~g~~~iv~~Ll~~ga~~  297 (300)
                      ||||+|+..||.+||++|++.|+++
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            9999999999999999999999764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-17  Score=132.99  Aligned_cols=147  Identities=16%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccceeeee-cccC---------CcccCcCcchHHHHHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWVNVSS-MIND---------ESQLDDNEKNIYEWAK  211 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~-~~~~---------~~~~~~~~~t~l~~a~  211 (300)
                      ++..+..++++.|.....+     +.. ....+.++++.++..|...+.. ++..         .......+.|++|.|+
T Consensus        46 A~~~~~~~iv~~L~~~g~d-----~~~-~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~  119 (221)
T d1iknd_          46 AVITNQPEIAEALLGAGCD-----PEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS  119 (221)
T ss_dssp             HHHTTCHHHHHCCCSCCCC-----SCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred             ccccccccccccccccccc-----ccc-cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHh
Confidence            5666677888888776544     111 1223445677777666542221 1111         2334456789999998


Q ss_pred             hCCHHHHHHHHhhcCCCCccccC-cCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHH
Q psy633          212 EGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL  290 (300)
Q Consensus       212 ~~~~~~v~~ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  290 (300)
                      ..+...+..++.. .+..++..+ ..|+||||+|+..|+.+++++|++ +|+|++.+|..|+||||+|+..++.+++++|
T Consensus       120 ~~~~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         120 IHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             hcCChhheeeecc-cCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            8776666677666 588887665 569999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHcCCC
Q psy633          291 VNSGAH  296 (300)
Q Consensus       291 l~~ga~  296 (300)
                      ++.+.+
T Consensus       198 ~~~~~~  203 (221)
T d1iknd_         198 GQLTLE  203 (221)
T ss_dssp             HTTSCG
T ss_pred             HHcCCc
Confidence            988765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=6.6e-16  Score=123.36  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce-----eeeecccCCcccCcCcchHHHHHHhCCHH
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV-----NVSSMINDESQLDDNEKNIYEWAKEGKLD  216 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~~~~~t~l~~a~~~~~~  216 (300)
                      +|..++.++++.|+.....     ++.. .....++.+.+...+..     ...............+.++.+.+......
T Consensus        30 A~~~g~~e~v~~Ll~~g~~-----~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          30 AARFARADAAKRLLDAGAD-----ANSQ-DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTCC-CTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             HHHcCCHHHHHHHHhhccc-----cccc-cccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            7777888888888765433     1111 11112222222222222     01111111233455677888888888887


Q ss_pred             HHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy633          217 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGAH  296 (300)
Q Consensus       217 ~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  296 (300)
                      .+..+|.. .+.+++.++..|+|||++++..+...++..|+. .+++++..|..|.||||+|+..|+.++|++|+++|||
T Consensus       104 ~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad  181 (209)
T d1ot8a_         104 GMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN  181 (209)
T ss_dssp             THHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hhhhhhhh-hcccccccCCCCCCcchhhcccCcceeeeeecc-ccccccccccccccccchhccccHHHHHHHHHHCCCC
Confidence            88888888 799999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCC
Q psy633          297 SSN  299 (300)
Q Consensus       297 ~~~  299 (300)
                      ++.
T Consensus       182 ~n~  184 (209)
T d1ot8a_         182 REI  184 (209)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.7e-16  Score=118.55  Aligned_cols=120  Identities=23%  Similarity=0.390  Sum_probs=100.8

Q ss_pred             CCccCccccce-eeeecccC---CcccCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHH
Q psy633          177 KENEGQTKGWV-NVSSMIND---ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV  252 (300)
Q Consensus       177 ~~~~a~~~g~~-~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  252 (300)
                      ++|.|+..|.. .+..++..   .+..|..|.||||+|+.++.+ +.++|.. .+++++..+..|.++|+.++..++..+
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~~~~~e-i~~~Ll~-~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE-IARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSCHH-HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccccccccc-ccccccc-cccccccccccCccccccccccccccc
Confidence            47788888877 33344433   355788899999999876655 5566666 699999999999999999999999999


Q ss_pred             HHHHHhhcCCCccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-CCCC
Q psy633          253 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGA-HSSN  299 (300)
Q Consensus       253 v~~Ll~~~g~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~  299 (300)
                      +.+|+. .+.+++..|..|.+|||+|+..++.+++++|+++|+ +++.
T Consensus        82 ~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  128 (156)
T d1ihba_          82 LQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH  128 (156)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            999999 999999999999999999999999999999999887 5543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=5.1e-15  Score=124.22  Aligned_cols=96  Identities=29%  Similarity=0.479  Sum_probs=84.5

Q ss_pred             cCcchHHHHHHh-CCHHHHHHHHhhcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          201 DNEKNIYEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       201 ~~~~t~l~~a~~-~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      ..+.|+|+.|+. |+.+.+..||..  |+++|..|..|+||||+|+..|+.++|++|++ .|++.+..+..+.|||++|+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeecc-cccccccccccccccccccc
Confidence            446688887766 666655555544  99999999999999999999999999999999 99999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCC
Q psy633          280 AIEHTDLIEYLVNSGAHSSN  299 (300)
Q Consensus       280 ~~g~~~iv~~Ll~~ga~~~~  299 (300)
                      ..++.++++.|+++|+..+.
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~  134 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGA  134 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC
T ss_pred             cccccchhhcccccCccccc
Confidence            99999999999999987754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=110.29  Aligned_cols=92  Identities=17%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             cCcchHHHHHHhCCHHHHHHHHh----hcCCCCccccCcCCchHHHHHHHCCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy633          201 DNEKNIYEWAKEGKLDMLVKQLT----KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD  276 (300)
Q Consensus       201 ~~~~t~l~~a~~~~~~~v~~ll~----~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~  276 (300)
                      ++|.||||+|+..+..++++.|+    . .|++++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~-~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCccCCCCCccceehhccccccccccccc-ccccccccccccccccc
Confidence            36899999998866655554443    4 689999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcC
Q psy633          277 YAKAIEHTDLIEYLVNSG  294 (300)
Q Consensus       277 ~A~~~g~~~iv~~Ll~~g  294 (300)
                      .|...++.++++.+....
T Consensus        79 ~a~~~~~~~~~~~~~~~~   96 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSA   96 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             cccccccccchhhhhhcc
Confidence            999999999999887643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=2.7e-15  Score=127.09  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhhhcccccccCCCCCccCccccce--------eeeecccCCcccCcCcchHHHHHHh-
Q psy633          142 EAMSKYIALLNEVDAGWEDKEQEEINWDESQESGSKENEGQTKGWV--------NVSSMINDESQLDDNEKNIYEWAKE-  212 (300)
Q Consensus       142 ~a~~~yi~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~--------~~~~~~~~~~~~~~~~~t~l~~a~~-  212 (300)
                      +|..+.+++|+.|+....+     ++. ....+.+++|.|+..++.        .+..+.......+..|+|+||.++. 
T Consensus       114 Aa~~g~~~~v~~Ll~~gad-----~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~  187 (301)
T d1sw6a_         114 LTSIANLELVKHLVKHGSN-----RLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT  187 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC-----CCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHH
Confidence            6777888888888876554     222 223466788888876542        1112222245567788899987653 


Q ss_pred             CC-----------HHHHHHHHhhcCCC------------------------------------CccccCcCCchHHHHHH
Q psy633          213 GK-----------LDMLVKQLTKLKDF------------------------------------NINQLDENGLNCLHWAC  245 (300)
Q Consensus       213 ~~-----------~~~v~~ll~~~~~~------------------------------------~~~~~d~~g~t~Lh~A~  245 (300)
                      +.           .+.+..++......                                    .+|.+|..|+||||+||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~  267 (301)
T d1sw6a_         188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA  267 (301)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHH
T ss_pred             hCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHH
Confidence            11           12222233221111                                    26888999999999999


Q ss_pred             HCCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy633          246 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK  279 (300)
Q Consensus       246 ~~g~~~~v~~Ll~~~g~~~~~~d~~g~TpL~~A~  279 (300)
                      ..|+.++|++||+ .|++++.+|..|+|||++|+
T Consensus       268 ~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         268 RLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             HcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999 99999999999999999985

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.6e-14  Score=95.15  Aligned_cols=49  Identities=37%  Similarity=0.556  Sum_probs=46.4

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      .++.|++|+.||+|||||||+|.+++++++|++++++.++||+|.|+.|
T Consensus        28 ~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          28 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             ceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            3689999999999999999999999999999999999999999999876

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=91.31  Aligned_cols=48  Identities=27%  Similarity=0.481  Sum_probs=45.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      +|.|++|+.||++||||||+|.+.+++++|++.+++.|+|+.|+|+.|
T Consensus        28 ~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1          28 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             cccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            678999999999999999999999999999998889999999999876

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=90.15  Aligned_cols=48  Identities=38%  Similarity=0.674  Sum_probs=45.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.|++|+.||++||||||+|.+++++++|++++++.|+||+|+|++|
T Consensus        28 ~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_          28 DCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             EEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             ccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            578999999999999999999999999999999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=108.75  Aligned_cols=100  Identities=24%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             cCcCcchHHHHHHhCCHHHHHHHHhhcCCCCccccCcCCchHHHHHHH----CCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy633          199 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACD----RGHLKVVQHLIEKCGADVNVTDSDGDYG  274 (300)
Q Consensus       199 ~~~~~~t~l~~a~~~~~~~v~~ll~~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~g~~~~~~d~~g~Tp  274 (300)
                      ....|.||||+|+..+...+.++|+...|++++..+..|.++++.+..    .+..+++++|++ .|++++.+|..|.||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTP  222 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCc
Confidence            455688999998876655556655543789999999999888877654    334679999999 999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHH-cCCCCCC
Q psy633          275 LDYAKAIEHTDLIEYLVN-SGAHSSN  299 (300)
Q Consensus       275 L~~A~~~g~~~iv~~Ll~-~ga~~~~  299 (300)
                      ||+|+..|+.++|++|++ .|++++.
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~din~  248 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIEIND  248 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred             cchhhhcCcHHHHHHHHHcCCCCCcC
Confidence            999999999999999998 5999875

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=93.00  Aligned_cols=52  Identities=38%  Similarity=0.534  Sum_probs=47.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||+|||||||+|.+++++.+|++ +.+.|+||.|.|+.|.++..
T Consensus        37 ~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a~~k~~   88 (90)
T d2cqga1          37 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQS   88 (90)
T ss_dssp             EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTCC
T ss_pred             eeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeCCCCCC
Confidence            68999999999999999999999999999997 45789999999999988754

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.5e-13  Score=90.67  Aligned_cols=49  Identities=35%  Similarity=0.552  Sum_probs=46.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      ++.|++|+.||++||||||+|.+++++++|++++++.|+||.|+|++|.
T Consensus        35 ~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1          35 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred             ceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            5789999999999999999999999999999999999999999999885

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.2e-13  Score=93.44  Aligned_cols=54  Identities=28%  Similarity=0.491  Sum_probs=50.6

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .++.|++|+.|+++||||||+|.+.++|++|++++++.|+|++|.|+.|.||..
T Consensus        48 ~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~~ke~  101 (103)
T d1x4ba1          48 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE  101 (103)
T ss_dssp             SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCC
T ss_pred             cceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECcccCC
Confidence            368899999999999999999999999999999999999999999999998754

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.1e-12  Score=89.03  Aligned_cols=52  Identities=23%  Similarity=0.411  Sum_probs=49.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +++|++|+.||++||||||+|.++++|..|++ +++..|+|++|.|..|.++.
T Consensus        30 ~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~   82 (85)
T d2u2fa_          30 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA   82 (85)
T ss_dssp             EEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCC
T ss_pred             eEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            68999999999999999999999999999999 99999999999999998653

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.4e-13  Score=91.13  Aligned_cols=53  Identities=30%  Similarity=0.515  Sum_probs=49.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|++|+.||++||||||+|.+.++|++|++ +++..|+|++|+|..|.++..
T Consensus        38 ~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~~   91 (93)
T d1x5ua1          38 NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK   91 (93)
T ss_dssp             EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred             ccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCC
Confidence            67889999999999999999999999999998 999999999999999988753

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.1e-13  Score=91.12  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .++.|++|+.||++||||||+|.++++|.+|++ ++++.|+|++|.|..|.|+.
T Consensus        33 ~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p~~   86 (89)
T d2cqba1          33 TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR   86 (89)
T ss_dssp             CCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             EecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence            368899999999999999999999999999998 89999999999999998764

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-12  Score=88.69  Aligned_cols=52  Identities=25%  Similarity=0.436  Sum_probs=48.3

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +.|++|+.||++||||||+|.+.+++.+|++ +++..++||+|.|..|.++..
T Consensus        29 ~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k~~   81 (83)
T d1x5ta1          29 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS   81 (83)
T ss_dssp             CEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred             EEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCCCc
Confidence            3689999999999999999999999999998 999999999999999987753

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-12  Score=89.55  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.|++|+.||++||||||+|.+.++|.+|++ +++..++|+.|.|..|.|+.
T Consensus        37 ~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~~   89 (90)
T d2cq0a1          37 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST   89 (90)
T ss_dssp             EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             cccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeCCC
Confidence            67899999999999999999999999999998 99999999999999998874

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-12  Score=87.33  Aligned_cols=49  Identities=24%  Similarity=0.362  Sum_probs=46.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +++|++|+.||++||||||+|.+++++..|++ +++..++||+|+|..|.
T Consensus        29 ~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1          29 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             EEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            68999999999999999999999999999998 99999999999998874

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=1.2e-12  Score=89.36  Aligned_cols=51  Identities=18%  Similarity=0.334  Sum_probs=48.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +++|++|+.||++||||||+|.+.++|++|+. +++..++|++|.|..|.+|
T Consensus        36 ~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~k   87 (88)
T d1rk8a_          36 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK   87 (88)
T ss_dssp             EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred             cccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEecCC
Confidence            67899999999999999999999999999998 8999999999999998765

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.27  E-value=1.8e-12  Score=87.38  Aligned_cols=50  Identities=22%  Similarity=0.420  Sum_probs=47.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      ++.|++|+.+|++||||||+|.++++|++|++ +++..++|++|+|..|+|
T Consensus        31 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          31 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             eeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            57889999999999999999999999999998 999999999999999976

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.4e-13  Score=93.90  Aligned_cols=51  Identities=24%  Similarity=0.397  Sum_probs=47.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.|++|+.||+|||||||+|.+.+++.+|+++++..|+|+.|.|+.|.++
T Consensus        47 ~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~~~   97 (101)
T d2cq4a1          47 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE   97 (101)
T ss_dssp             EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred             EEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCCC
Confidence            689999999999999999999999999999999999999999999887543

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.6e-12  Score=89.73  Aligned_cols=53  Identities=32%  Similarity=0.463  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.|++|+.||++||||||+|.+.+++.+|++ +++..|+||+|.|..|.++..
T Consensus        37 ~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~~   90 (99)
T d1whwa_          37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred             eeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCc
Confidence            57899999999999999999999999999998 999999999999999987653

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.2e-12  Score=89.71  Aligned_cols=54  Identities=33%  Similarity=0.519  Sum_probs=50.3

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      .++.+++|+.||++||||||+|.+.++|.+|++ +++..|.|++|.|..|.++..
T Consensus        46 ~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~~  100 (102)
T d2cpza1          46 VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND  100 (102)
T ss_dssp             SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred             cccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCCC
Confidence            367899999999999999999999999999997 999999999999999988754

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=90.29  Aligned_cols=53  Identities=23%  Similarity=0.536  Sum_probs=49.2

Q ss_pred             CeEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            1 MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         1 ~~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .+|.|++|+.||++||||||+|.+.+++.+|++ ++++.|+|++|.|..|.++.
T Consensus        36 ~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~~   89 (104)
T d1p1ta_          36 VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK   89 (104)
T ss_dssp             SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred             cccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            368899999999999999999999999999998 89999999999999987654

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.1e-12  Score=85.03  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=47.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      ++++++|+.+|++||||||+|.+++++++|++ ++++.++|++|.|..|+|
T Consensus        31 ~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            67899999999999999999999999999998 999999999999999876

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.2e-12  Score=84.33  Aligned_cols=48  Identities=29%  Similarity=0.632  Sum_probs=45.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.++.|+.++++||||||+|.+++++++|++++++.|+||+|+|+.|
T Consensus        31 ~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          31 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             ccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            568899999999999999999999999999999999999999999876

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.7e-12  Score=87.36  Aligned_cols=51  Identities=25%  Similarity=0.547  Sum_probs=46.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.|++|+.||++||||||+|.+.++|++|++...+.|+||+|.|+.|.++
T Consensus        39 ~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          39 EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   89 (103)
T ss_dssp             EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             ceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCCC
Confidence            688999999999999999999999999999994446899999999988654

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=6.8e-12  Score=85.13  Aligned_cols=51  Identities=16%  Similarity=0.400  Sum_probs=43.5

Q ss_pred             eEEEee-eCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            2 NASVMF-DKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~-d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|+|++ ++.+|++||||||+|.+.+++.+|++++++.++||+|+|..|.++
T Consensus        34 ~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~~k   85 (86)
T d2ghpa3          34 KINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK   85 (86)
T ss_dssp             EEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred             ceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcCCC
Confidence            466655 568999999999999999999999999999999999999999876

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=8e-12  Score=82.52  Aligned_cols=48  Identities=35%  Similarity=0.641  Sum_probs=45.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      ++.+++++.+|+++|||||+|.+++++++|++++++.|+||+|+|+.|
T Consensus        28 ~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             eeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            567889999999999999999999999999999999999999999875

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.17  E-value=1.1e-11  Score=83.89  Aligned_cols=48  Identities=27%  Similarity=0.517  Sum_probs=44.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a   49 (300)
                      ++++++|+.||++||||||+|.+.++|.+|++ +++..+.|  ++|.|+.|
T Consensus        35 ~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          35 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             eeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            67899999999999999999999999999998 99999987  88998865

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-11  Score=85.20  Aligned_cols=51  Identities=14%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +|.+++|+.+|++||||||+|.+.++|..|++ +++..++|++|.|..+.+.
T Consensus        36 ~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~   87 (93)
T d1h2vz_          36 KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF   87 (93)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred             eeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            68899999999999999999999999999998 9999999999999987643

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.1e-11  Score=83.22  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      .+.++.++.+|++||||||+|.+.++|.+|++ +++..++|++|.|+.|.|
T Consensus        30 ~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1          30 LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             eeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            45678888999999999999999999999998 999999999999999887

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.6e-11  Score=81.67  Aligned_cols=48  Identities=29%  Similarity=0.401  Sum_probs=44.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +++|+.|+ +|++||||||+|.++++|.+|++ +++..++||+|+|..|.
T Consensus        29 ~~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          29 KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            67888985 89999999999999999999998 89999999999998765

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.6e-11  Score=84.72  Aligned_cols=52  Identities=35%  Similarity=0.508  Sum_probs=46.8

Q ss_pred             eEEEeeeCC-CCCccCeEEEEecChHHHHHHHh-c-CCceecCccceecCCCCCc
Q psy633            2 NASVMFDKN-TGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~-t~~~rGfgfv~f~~~~~~~~a~~-~-~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|+|++|+. ||++||||||+|.+.++|.+|++ + ++..++||+|.|..|.++.
T Consensus        37 ~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          37 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   91 (94)
T ss_dssp             EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             EEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCCC
Confidence            577888864 89999999999999999999998 6 8999999999999998664

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.16  E-value=1.1e-11  Score=92.17  Aligned_cols=53  Identities=23%  Similarity=0.468  Sum_probs=49.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ ++++.|+||.|+|..|.++..
T Consensus        71 ~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~~~  124 (139)
T d1u6fa1          71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ  124 (139)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred             ccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            67899999999999999999999999999998 899999999999999976643

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.6e-11  Score=83.06  Aligned_cols=51  Identities=29%  Similarity=0.595  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCC---CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            2 NASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         2 ~~~~~~d~~t~---~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++.|++|+.++   +|||||||+|.++++|.+|++ ++++.++|++|.|..|.++
T Consensus        27 ~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~~   81 (85)
T d2cpfa1          27 SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERA   81 (85)
T ss_dssp             EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred             ccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            57889998776   579999999999999999998 9999999999999998644

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.1e-11  Score=82.15  Aligned_cols=45  Identities=27%  Similarity=0.612  Sum_probs=42.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCcccee
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI   46 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v   46 (300)
                      +|.|++|+.||++||||||+|.+.++|.+|++ +++..|+||+|+|
T Consensus        38 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          38 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             cccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            67899999999999999999999999999998 9999999999986

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-11  Score=84.09  Aligned_cols=53  Identities=25%  Similarity=0.532  Sum_probs=48.5

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.++.+|++||||||+|.+++++++|++ ++++.|+|++|.|..|.++..
T Consensus        34 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~   87 (90)
T d1x5sa1          34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   87 (90)
T ss_dssp             EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             ceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCC
Confidence            57789999999999999999999999999997 999999999999999876643

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.2e-11  Score=82.30  Aligned_cols=48  Identities=19%  Similarity=0.529  Sum_probs=43.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCc--cceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGS--RLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~--~~~v~~a   49 (300)
                      +++|++|+.+|++||||||+|.+++++.+|++ +++..++|+  +|.|+.|
T Consensus        35 ~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          35 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             ccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            67899999999999999999999999999998 999999984  4777654

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.4e-11  Score=84.32  Aligned_cols=52  Identities=21%  Similarity=0.367  Sum_probs=47.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .+.+++|+.||++||||||+|.++++|.+|++ +++..|+||+|.|..|.++.
T Consensus        45 ~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~   97 (101)
T d2cpea1          45 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP   97 (101)
T ss_dssp             SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred             eeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            35678899999999999999999999999998 89999999999999998764

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.09  E-value=1.7e-11  Score=83.95  Aligned_cols=49  Identities=22%  Similarity=0.498  Sum_probs=44.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCC
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~   52 (300)
                      +.|+ ++.+|++||||||+|.+.+++++|++++++.++|++|+|..|.+|
T Consensus        43 ~~v~-~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak~k   91 (91)
T d1fjeb1          43 LAVV-DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR   91 (91)
T ss_dssp             CCCC-EEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred             eeee-ecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecCCC
Confidence            4454 457999999999999999999999999999999999999999765

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.7e-11  Score=82.88  Aligned_cols=53  Identities=19%  Similarity=0.379  Sum_probs=46.1

Q ss_pred             eEEEeeeC-CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCch
Q psy633            2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.++ .+|++||||||+|.+.+++++|++++++.|+||.|+|..|.++..
T Consensus        43 ~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~~~~   96 (104)
T d1wi8a_          43 AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD   96 (104)
T ss_dssp             EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred             cceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            45566665 589999999999999999999988999999999999999987654

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.8e-11  Score=80.30  Aligned_cols=50  Identities=28%  Similarity=0.533  Sum_probs=44.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.|+.|+.  .+||||||+|.+.++|++|++ +++..|+|++|.|..|.++.
T Consensus        37 ~~~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~~~   87 (89)
T d1cvja2          37 SCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK   87 (89)
T ss_dssp             EEEECCBTT--BCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCCTT
T ss_pred             EEEEEeecC--CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            578888864  489999999999999999998 89999999999999998764

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.9e-10  Score=79.82  Aligned_cols=52  Identities=25%  Similarity=0.438  Sum_probs=46.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cC------CceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD------SHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~------~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.++.++.++++||||||+|.+.+++.+|++ ++      +..++||+|.|..|.+|.
T Consensus        37 ~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k~   95 (98)
T d1x4ha1          37 YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD   95 (98)
T ss_dssp             EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred             eeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCCC
Confidence            56788999999999999999999999999998 54      677999999999998764

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.5e-11  Score=82.63  Aligned_cols=52  Identities=27%  Similarity=0.379  Sum_probs=47.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.++.|+.+|++||||||+|.+.++|.+|++ +++..|.|++|.|..|.++.
T Consensus        47 ~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k~   99 (102)
T d2cpxa1          47 GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK   99 (102)
T ss_dssp             SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred             eEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCcc
Confidence            35677888899999999999999999999998 99999999999999998764

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.5e-10  Score=78.37  Aligned_cols=50  Identities=30%  Similarity=0.623  Sum_probs=45.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.++.|+.  .+||||||+|.+++++.+|++ +++..++|++|.|..|.+|.
T Consensus        40 ~v~~~~~~~--~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r~   90 (93)
T d2cq3a1          40 DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV   90 (93)
T ss_dssp             EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred             ecccccccc--CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCcCC
Confidence            577888864  489999999999999999998 99999999999999998874

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.7e-10  Score=77.78  Aligned_cols=46  Identities=24%  Similarity=0.174  Sum_probs=41.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP   48 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~   48 (300)
                      +|.|+.+ .+|++||||||+|.++++|.+|+++++..+.|+++.|..
T Consensus        35 ~v~l~~~-~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~   80 (85)
T d1zh5a2          35 NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF   80 (85)
T ss_dssp             EEEEEEC-TTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEE
T ss_pred             cceeeee-ccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEE
Confidence            5677777 589999999999999999999999999999999999975

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-10  Score=81.34  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.+++|. +|++||||||+|.++++|++|++++++.|+||.|+|..+.++.
T Consensus        43 ~v~~~~~~-~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~~~   93 (102)
T d1weza_          43 RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             eeeeEEec-CCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            56788884 6899999999999999999999999999999999999887654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.7e-10  Score=79.97  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             EEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            3 ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         3 ~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +.++.++.+++++|||||+|.+++++++|++++++.|+||.|+|..+.++.
T Consensus        45 ~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~~   95 (104)
T d1wg5a_          45 GMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred             EEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHHH
Confidence            456677789999999999999999999999999999999999999887654

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.5e-10  Score=78.14  Aligned_cols=53  Identities=15%  Similarity=0.234  Sum_probs=45.0

Q ss_pred             eEEEeeeC-CCCCccCeEEEEecChHHHHHHHh-cC--CceecCccceecCCCCCch
Q psy633            2 NASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFS-TD--SHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         2 ~~~~~~d~-~t~~~rGfgfv~f~~~~~~~~a~~-~~--~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++.++.|+ .+|++||||||+|.+.++|.+|++ ++  +..++|++|.|.+|.|+..
T Consensus        31 ~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~~~   87 (96)
T d2disa1          31 DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID   87 (96)
T ss_dssp             EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred             EEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCCCC
Confidence            46778885 589999999999999999999998 64  4556899999999988654

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=79.89  Aligned_cols=46  Identities=15%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP   48 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~   48 (300)
                      +|+|+.| .+|++||||||+|.+.++|.+|++ +++..++||+|.|..
T Consensus        56 ~v~I~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~  102 (104)
T d1jmta_          56 EMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             EEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             EEEeecC-CCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEE
Confidence            5778766 689999999999999999999998 999999999999864

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.6e-10  Score=76.53  Aligned_cols=50  Identities=8%  Similarity=0.282  Sum_probs=44.6

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.++.|+.++  ||||||+|.+.++|.+|++ ++++.|.|+.|+|..|.++.
T Consensus        37 ~v~i~~d~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~   87 (90)
T d2cqia1          37 SCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS   87 (90)
T ss_dssp             EEEEECCCCSS--CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred             eeeeecccCcc--ceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            57788887765  8999999999999999998 89999999999999997653

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.6e-10  Score=77.13  Aligned_cols=45  Identities=9%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCC
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS   49 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a   49 (300)
                      ++.+..+|++||||||+|.++++|++|++ ++++.|+||+|+|..+
T Consensus        41 ~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          41 CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             EEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            45556799999999999999999999998 8999999999999754

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-10  Score=74.87  Aligned_cols=44  Identities=25%  Similarity=0.473  Sum_probs=40.8

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccce
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS   45 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~   45 (300)
                      ++++++++.++++||||||+|.+.++|++|++ +++..++||.++
T Consensus        27 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1          27 STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             ccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            46788999999999999999999999999998 999999998875

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=80.70  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCC
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~   51 (300)
                      .++.+..+|++||||||+|.++++|++|++++++.|+||.|.|..+.+
T Consensus        39 ~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~~   86 (103)
T d2cpya1          39 VHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL   86 (103)
T ss_dssp             EEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred             EEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECCH
Confidence            455666899999999999999999999999999999999999987753

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.7e-10  Score=77.40  Aligned_cols=51  Identities=18%  Similarity=0.390  Sum_probs=45.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.++.| .++++||||||+|.+.++|.+|++ +||..|.||++.|..+.|-.
T Consensus        47 ~~~~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~Pl~   98 (101)
T d1x5oa1          47 STRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL   98 (101)
T ss_dssp             EEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred             ceeeecc-cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCCCcc
Confidence            4566667 589999999999999999999998 99999999999998887643

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=8.1e-10  Score=75.04  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             eEEEeeeCCCCCcc---CeEEEEecChHHHHHHHh-cCCceecCccceec
Q psy633            2 NASVMFDKNTGLSK---GFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ   47 (300)
Q Consensus         2 ~~~~~~d~~t~~~r---Gfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~   47 (300)
                      +|.|++|+.++.++   |||||+|.++++|.+|++ +++..++||+|+|.
T Consensus        40 ~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          40 KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            57899998887765   899999999999999998 99999999999873

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-09  Score=84.15  Aligned_cols=94  Identities=23%  Similarity=0.403  Sum_probs=76.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchhhhhh--hhhhhhhhhhhhhhhhhhHH
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQVKKK--IETKETASFSRMAENMEDRF   79 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~F   79 (300)
                      ++.+++|+.+|++||||||+|.+.+++.+|+...+..++++.+.+....++.......  .....               
T Consensus        35 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   99 (183)
T d1u1qa_          35 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK---------------   99 (183)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCCTTGGGSTTTTCCCSE---------------
T ss_pred             EEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhhcccccccccccccce---------------
Confidence            5788999999999999999999999999999988899999999988776554332211  11112               


Q ss_pred             HHHhhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           80 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        80 ~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                          .||++++..++++++.++|..|+.+....+.
T Consensus       100 ----i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~  130 (183)
T d1u1qa_         100 ----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM  130 (183)
T ss_dssp             ----EEEECCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred             ----eEEccCCCcCCHHHHhhhhccCCceeeeeee
Confidence                3899999999999999999999987655443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-10  Score=81.24  Aligned_cols=50  Identities=16%  Similarity=0.310  Sum_probs=44.8

Q ss_pred             EEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCc
Q psy633            4 SVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         4 ~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .++.+..+|+++|||||+|.+.+++++|++++++.|+||.|+|..+.++.
T Consensus        49 ~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~~~~   98 (112)
T d1wela1          49 IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG   98 (112)
T ss_dssp             CEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             eeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcChHH
Confidence            46677789999999999999999999999999999999999998876543

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.83  E-value=5.8e-10  Score=76.99  Aligned_cols=50  Identities=16%  Similarity=0.397  Sum_probs=44.6

Q ss_pred             EeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            5 VMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         5 ~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      |..++.+|++||||||+|.+.++|.+|++ ++++.|+||+|.|..+.++..
T Consensus        43 v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~~   93 (96)
T d1fjca_          43 IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG   93 (96)
T ss_dssp             ECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred             ceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            33445689999999999999999999998 999999999999999998764

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-09  Score=74.77  Aligned_cols=49  Identities=12%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      +..+.++++||||||+|.+.++|.+|++ +++..++|++|.|..|.++..
T Consensus        37 i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~~~   86 (91)
T d1nu4a_          37 ILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD   86 (91)
T ss_dssp             EECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred             eEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCCch
Confidence            3445678899999999999999999998 999999999999999987643

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.7e-10  Score=76.08  Aligned_cols=45  Identities=18%  Similarity=0.439  Sum_probs=41.1

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCC
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~   50 (300)
                      +.+..++++||||||+|.+++++++|+++++..++||+|+|+++.
T Consensus        39 ~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r~k   83 (90)
T d1u2fa_          39 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH   83 (90)
T ss_dssp             EEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBCTT
T ss_pred             eeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECCCC
Confidence            467789999999999999999999999999999999999997643

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.4e-09  Score=76.27  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      .++++||||||+|.+.++|..|++ ++++.|+|+.|.|..+.+.
T Consensus        41 ~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   84 (114)
T d2f9da1          41 NTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNAN   84 (114)
T ss_dssp             CSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred             ccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            467889999999999999999998 9999999999999988643

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=4.6e-09  Score=68.70  Aligned_cols=46  Identities=9%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      +++++.|+.+  ++|||||+|.++++|.+|+.++++.|+|++|.|..+
T Consensus        29 ~v~~~~~~~~--~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          29 HVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             EEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             EEEEEeeccc--cceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            5778888753  467999999999999999999999999999999765

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-09  Score=72.88  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             eCCCCCccCeEEEEecChHHHHHHHh-cCCc-eecCccceecCCCCCch
Q psy633            8 DKNTGLSKGFGFVTFQNKEAVDKVFS-TDSH-VLEGSRLSIQPSDSHNS   54 (300)
Q Consensus         8 d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~-~~~g~~~~v~~a~~~~~   54 (300)
                      +....++||||||+|.++++|.+|++ +++. .++|++|.|..|.|+..
T Consensus        30 ~~~~~~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~k~~   78 (80)
T d2cqha1          30 AGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL   78 (80)
T ss_dssp             SSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred             EeEEecccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCCcCc
Confidence            44556789999999999999999998 8985 69999999999988643

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.3e-09  Score=73.47  Aligned_cols=44  Identities=20%  Similarity=0.431  Sum_probs=40.5

Q ss_pred             CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++++||||||+|.+.++|.+|+. +++..|+|++|.|..|.|+..
T Consensus        40 ~~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~~~   84 (86)
T d2cpda1          40 VKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK   84 (86)
T ss_dssp             EEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred             EccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCCCC
Confidence            46789999999999999999998 899999999999999988754

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.5e-09  Score=71.06  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             eeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633            6 MFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus         6 ~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +.-..++.+||||||+|.+++++..|++ ++++.|+|++|+|..|.+.
T Consensus        44 ~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~~   91 (95)
T d1x4aa1          44 IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   91 (95)
T ss_dssp             EEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             EEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccCC
Confidence            3344567789999999999999999998 9999999999999998764

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.7e-09  Score=72.48  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=36.7

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      +||||||+|.+.++|.+|++ +++..|+|++|+|..+.++
T Consensus        49 ~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          49 HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred             eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            68999999999999999998 9999999999999998754

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3.2e-09  Score=69.47  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      .++++||||||+|.+.++|.+|++ +++..++|++|.|..+...
T Consensus        28 ~~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          28 FVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             EEETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             eecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            467899999999999999999998 9999999999999988543

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.1e-08  Score=70.35  Aligned_cols=46  Identities=20%  Similarity=0.364  Sum_probs=40.3

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|+++.|      ||||||+|.+.++|.+|+. +++..|+|++|+|..+.++.
T Consensus        47 ~v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~p   93 (96)
T d1x4ga1          47 EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP   93 (96)
T ss_dssp             EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred             EEEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            4566654      8999999999999999998 99999999999999987654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3e-09  Score=71.98  Aligned_cols=45  Identities=16%  Similarity=0.391  Sum_probs=39.5

Q ss_pred             CCCCccCeEEEEecChHHHHHHHhcCCceecCccceecCCCCCchh
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNSQ   55 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a~~~~~~   55 (300)
                      .++.+||||||+|.+.++|++|+. +++.|+|++|.|+.|.++...
T Consensus        37 ~~~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~~k~~~   81 (88)
T d1wf0a_          37 IPKPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAEPKHNS   81 (88)
T ss_dssp             CCSSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCCCCCCC
T ss_pred             EeeccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCCCCCCC
Confidence            356789999999999999999985 789999999999999887643

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.9e-08  Score=70.87  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=41.0

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +|.|++|     +||||||+|.+.++|.+|++ +++..|.|++|+|..+..+.
T Consensus        32 ~v~i~~~-----~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~~   79 (109)
T d2adca1          32 RVKILFN-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN   79 (109)
T ss_dssp             EEEECCT-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred             eEEEEec-----ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            4667766     38999999999999999998 99999999999999986543

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-08  Score=66.92  Aligned_cols=40  Identities=18%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++||||||+|.+.++|.+|++ +++..++|++|+|..|.++
T Consensus        37 ~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1          37 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred             cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            568999999999999999998 9999999999999999765

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.5e-09  Score=71.06  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             CCCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      .++++||||||+|.+.++|++|++ +++..++|++|.|..+.++.
T Consensus        35 ~~~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~~   79 (88)
T d1wg1a_          35 YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             EEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             eeeccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            456899999999999999999998 99999999999999986543

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2.5e-08  Score=66.98  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +.||||||+|.+.++|.+|++ +++..|+|++|+|..|.++.
T Consensus        42 ~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1          42 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   83 (86)
T ss_dssp             TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcC
Confidence            347999999999999999999 99999999999999987653

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.8e-08  Score=68.57  Aligned_cols=43  Identities=21%  Similarity=0.345  Sum_probs=38.9

Q ss_pred             CCCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++.++||+||+|.++++|.+|+. +++..++||+|.|..+.++.
T Consensus        53 ~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~   96 (99)
T d2dita1          53 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT   96 (99)
T ss_dssp             TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred             CCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcC
Confidence            34678999999999999999998 99999999999999987663

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.8e-08  Score=66.64  Aligned_cols=43  Identities=16%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             CCCCccCeEEEEecChHHHHHHHhcCCceecCc-cceecCCCCC
Q psy633           10 NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGS-RLSIQPSDSH   52 (300)
Q Consensus        10 ~t~~~rGfgfv~f~~~~~~~~a~~~~~~~~~g~-~~~v~~a~~~   52 (300)
                      ..+++||||||+|.++++|++|+++++..|+|+ .|.|+++..+
T Consensus        34 ~~~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~k   77 (81)
T d1wwha1          34 VMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK   77 (81)
T ss_dssp             EECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred             EecCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCCh
Confidence            456789999999999999999999999999998 4678887654

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.1e-08  Score=66.20  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=37.0

Q ss_pred             CCCccCeEEEEecChHHHHHHHh-cCCcee-cCccceecCCCCC
Q psy633           11 TGLSKGFGFVTFQNKEAVDKVFS-TDSHVL-EGSRLSIQPSDSH   52 (300)
Q Consensus        11 t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~-~g~~~~v~~a~~~   52 (300)
                      ++++||||||+|.+.++|.+|+. +++..+ +|++|+|..++++
T Consensus        44 ~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~~   87 (88)
T d2adca2          44 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST   87 (88)
T ss_dssp             CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred             eecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCCC
Confidence            45679999999999999999998 899887 6999999988653

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=6.1e-08  Score=67.39  Aligned_cols=42  Identities=10%  Similarity=-0.014  Sum_probs=38.8

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCch
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHNS   54 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~~   54 (300)
                      ++||||||+|.+.++|.+|++ +++..|+|++|+|..|.++..
T Consensus        44 k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~   86 (104)
T d1weya_          44 KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHI   86 (104)
T ss_dssp             TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCCC
Confidence            688999999999999999999 999999999999999976643

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4e-08  Score=66.12  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=35.7

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++|||||+|.+.++|++|+. +++..|+|+.+.|..+.++.
T Consensus        34 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~~   74 (87)
T d3begb1          34 RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV   74 (87)
T ss_dssp             TTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred             ccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecCc
Confidence            34999999999999999997 99999999999998876544

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-07  Score=65.97  Aligned_cols=51  Identities=10%  Similarity=0.052  Sum_probs=41.4

Q ss_pred             eEEEeeeCCCCCccCeEEEEecChHHHHHHHh-cCCcee--cCccceecCCCCCchhh
Q psy633            2 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVL--EGSRLSIQPSDSHNSQV   56 (300)
Q Consensus         2 ~~~~~~d~~t~~~rGfgfv~f~~~~~~~~a~~-~~~~~~--~g~~~~v~~a~~~~~~~   56 (300)
                      ++.|+.+    ++||||||+|.+.++|.+|+. +++..|  .|++|+|..+.++....
T Consensus        36 ~~~i~~~----~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~~~~   89 (108)
T d2adba1          36 KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV   89 (108)
T ss_dssp             EEEEEEE----TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSCSCCC
T ss_pred             EEEEEee----CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCccccc
Confidence            4667766    368999999999999999998 899888  57889988887655433

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.5e-07  Score=66.22  Aligned_cols=40  Identities=13%  Similarity=0.000  Sum_probs=36.3

Q ss_pred             CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCC
Q psy633           12 GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        12 ~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~   51 (300)
                      .++||||||+|.+.++|.+|++ +++..|.|++|.|..+..
T Consensus        43 ~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          43 PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             eccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            4578999999999999999998 999999999999987743

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-07  Score=64.99  Aligned_cols=49  Identities=12%  Similarity=0.051  Sum_probs=42.2

Q ss_pred             eEEEeeeCCC--CCccCeEEEEecChHHHHHHHh-cCCceecCccceecCCC
Q psy633            2 NASVMFDKNT--GLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD   50 (300)
Q Consensus         2 ~~~~~~d~~t--~~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~   50 (300)
                      +|.|++++.+  ...+|++||.|.+.++|.+|+. ++|..++||+|.+..+.
T Consensus        43 ~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~   94 (104)
T d1o0pa_          43 SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   94 (104)
T ss_dssp             EEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred             EEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence            5677777655  3457999999999999999999 99999999999998864

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.29  E-value=3.4e-07  Score=60.80  Aligned_cols=37  Identities=11%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCcee-cCccceecCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVL-EGSRLSIQPSD   50 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~-~g~~~~v~~a~   50 (300)
                      +||||||+|.+.++|.+|++ +++..| +|++|.|..|.
T Consensus        44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          44 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            57999999999999999999 899888 56899998874

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=2e-07  Score=64.05  Aligned_cols=39  Identities=15%  Similarity=0.229  Sum_probs=35.6

Q ss_pred             ccCeEEEEecChHHHHHHHh-cCCceecCccceecCCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++|||||+|.+.+++++|++ +++..++|+.|.|..+.++
T Consensus        49 ~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~   88 (98)
T d1wg4a_          49 KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY   88 (98)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEE
T ss_pred             ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecC
Confidence            57999999999999999998 9999999999999887544

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.5e-06  Score=59.52  Aligned_cols=40  Identities=13%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             CccCeEEEEecChHHHHHHHh---cCCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS---TDSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~---~~~~~~~g~~~~v~~a~~~   52 (300)
                      ++||||||+|.+.++|.+|++   +++..++||+|.|..|+.+
T Consensus        53 ~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~   95 (99)
T d1x4fa1          53 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY   95 (99)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             ecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCc
Confidence            457999999999999999985   6788999999999988654

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.7e-06  Score=59.04  Aligned_cols=41  Identities=17%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCceecC--ccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVLEG--SRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~~g--~~~~v~~a~~~~   53 (300)
                      +.||||||+|.+.++|.+|++ +++..|+|  ++|+|..|++..
T Consensus        51 ~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~~~   94 (97)
T d1whya_          51 KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP   94 (97)
T ss_dssp             SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred             ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCCCC
Confidence            358999999999999999998 89999987  478888887643

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-06  Score=57.50  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             CccCeEEEEecChHHHHHHHh-c--CCceecCccceecCCCCC
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQPSDSH   52 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~~a~~~   52 (300)
                      +++|||||+|.+.++|.+|++ +  ++..++|++|+|..+..+
T Consensus        42 ~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~   84 (88)
T d2cq1a1          42 KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   84 (88)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             ccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCC
Confidence            467999999999999999987 3  678899999999998654

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.7e-06  Score=57.55  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             CccCeEEEEecChHHHHHHHh-c--CCceecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~~a~~~~   53 (300)
                      ++||||||+|.+.++|.+|+. +  ++..+.|++|+|..+..+.
T Consensus        49 ~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~   92 (104)
T d1wexa_          49 PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR   92 (104)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred             ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCc
Confidence            568999999999999999997 4  5678999999999986543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.3e-05  Score=53.56  Aligned_cols=38  Identities=11%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             ccCeEEEEecChHHHHHHHh-c--CCceecCccceecCCCC
Q psy633           14 SKGFGFVTFQNKEAVDKVFS-T--DSHVLEGSRLSIQPSDS   51 (300)
Q Consensus        14 ~rGfgfv~f~~~~~~~~a~~-~--~~~~~~g~~~~v~~a~~   51 (300)
                      .|+||||+|++.++|.+|++ +  ++..++||+|.|..|.+
T Consensus        44 ~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          44 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            46899999999999999997 3  67789999999999864

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.6e-05  Score=54.52  Aligned_cols=41  Identities=10%  Similarity=0.009  Sum_probs=33.1

Q ss_pred             CccCeEEEEecCh-HHHHHHHh-cCCceecCccceecCCCCCc
Q psy633           13 LSKGFGFVTFQNK-EAVDKVFS-TDSHVLEGSRLSIQPSDSHN   53 (300)
Q Consensus        13 ~~rGfgfv~f~~~-~~~~~a~~-~~~~~~~g~~~~v~~a~~~~   53 (300)
                      +.||||||+|.++ ++|.+|+. +++..+.++.+.|..+.++.
T Consensus        45 ~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~~~~   87 (113)
T d1owxa_          45 RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG   87 (113)
T ss_dssp             TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred             cCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEeeccc
Confidence            3589999999996 67777777 89999999888887776554

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00011  Score=50.05  Aligned_cols=30  Identities=10%  Similarity=0.360  Sum_probs=25.6

Q ss_pred             CccCeEEEEecChHHHHHHHh-cCCcee-cCc
Q psy633           13 LSKGFGFVTFQNKEAVDKVFS-TDSHVL-EGS   42 (300)
Q Consensus        13 ~~rGfgfv~f~~~~~~~~a~~-~~~~~~-~g~   42 (300)
                      +.||||||+|.+.++|.+|+. |+|..| +|.
T Consensus        54 ~~k~~aFV~f~~~e~A~~A~~~lng~~i~~~~   85 (101)
T d2cq2a1          54 PNKPYSFARYRTTEESKRAYVTLNGKEVVDDL   85 (101)
T ss_dssp             TTCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred             cCccEEEEEECCHHHHHHHHHHhCCCCCCCCC
Confidence            457999999999999999998 898776 443

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.29  Score=32.51  Aligned_cols=76  Identities=11%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             HHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC--CCCccch-----hhhHH-----HHHHHHcCCCCHHHHHHH
Q psy633           79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPSWYNM-----EAKSK-----YNAWNSLGQMAKSEAMSK  146 (300)
Q Consensus        79 F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~~-----~~~~k-----~~aw~~~~~~~~~~a~~~  146 (300)
                      |-++..-+-.-.-.++.++...+.++.-|+..|+.+..  .++.+..     .....     -..|.++.||+..+|+..
T Consensus        16 ylQlr~~i~~G~~~~~~~~a~~Laal~~Qae~GD~~~~~~~~~yl~~~~~~p~~~~~~~~~I~~~h~~l~G~s~~~A~~~   95 (106)
T d1gg3a1          16 CLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLE   95 (106)
T ss_dssp             HHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTSCSSCCGGGSCCCSSCCHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCCCCccccchhhhhHHhcCCccHHHHHHHHHHHHHHccCcCHHHHHHH
Confidence            34443333333346889999999999999999998654  2322111     11122     345889999999999999


Q ss_pred             HHHHHHhh
Q psy633          147 YIALLNEV  154 (300)
Q Consensus       147 yi~~v~~l  154 (300)
                      |+.++..+
T Consensus        96 fL~~~~~l  103 (106)
T d1gg3a1          96 FLENAKKL  103 (106)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhcC
Confidence            99999876

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.24  Score=33.17  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=52.0

Q ss_pred             HHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCCC--CCccch-------------hhhHHHH-----HHHHcCCC
Q psy633           79 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK--PSWYNM-------------EAKSKYN-----AWNSLGQM  138 (300)
Q Consensus        79 F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~--p~~~~~-------------~~~~k~~-----aw~~~~~~  138 (300)
                      |-++..-+-.=.-.++.++...|.++.-|+..|+.+...  ++.+..             .....|.     .|..++||
T Consensus        16 ylQlr~dil~G~~~~~~~~a~~LAal~~Qae~GD~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~hk~l~G~   95 (111)
T d1h4ra1          16 FLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGR   95 (111)
T ss_dssp             HHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhCCCChhhcccchhhhhhcCCchHHHHhhccHHHHHHHHHHHHHHcCCC
Confidence            344433333223468899999999999999999986542  222111             1123344     58899999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy633          139 AKSEAMSKYIALLNEV  154 (300)
Q Consensus       139 ~~~~a~~~yi~~v~~l  154 (300)
                      ++.+|+..|+.+++.|
T Consensus        96 s~~~A~~~yL~~~~~L  111 (111)
T d1h4ra1          96 ARDEAEMEYLKIAQDL  111 (111)
T ss_dssp             CHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhhC
Confidence            9999999999998764

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.086  Score=33.79  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             EEEEecChHHHHHHHhcCCceecCccceecCC
Q psy633           18 GFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS   49 (300)
Q Consensus        18 gfv~f~~~~~~~~a~~~~~~~~~g~~~~v~~a   49 (300)
                      -.|||.+-+.|-+|+++++..+.|+.|.|...
T Consensus        61 mwVTF~dG~SAL~al~l~g~~v~G~~l~It~~   92 (95)
T d1ufwa_          61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGP   92 (95)
T ss_dssp             EEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred             EEEEECCcHHHHHHhccCCeEEcceEEEEecC
Confidence            57999999999999999999999999998654

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.52  E-value=0.66  Score=30.98  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=54.0

Q ss_pred             HHHHHhhhhcccccCCChHHHHHHHHhhcccccccCCCC--CCCccch-----------h-hhHHHHHHHHcCCCCHHHH
Q psy633           78 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPSWYNM-----------E-AKSKYNAWNSLGQMAKSEA  143 (300)
Q Consensus        78 ~F~~a~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~~-----------~-~~~k~~aw~~~~~~~~~~a  143 (300)
                      -|.++..-+-.=.-.++.++...|.++.-|+..|+.+..  .++.+..           . ...=-..|.++.+|+..+|
T Consensus        21 ~y~Q~k~dil~G~~~~~~~~a~~Laal~~Q~e~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~h~~l~g~s~~~A  100 (114)
T d1mixa1          21 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEA  100 (114)
T ss_dssp             HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHhCCCCccccccchhhhcccCChhhchHHHHHHHHHHHHHccCCCHHHH
Confidence            455555444433456789999999999999999987664  2322211           0 1111355889999999999


Q ss_pred             HHHHHHHHHhh
Q psy633          144 MSKYIALLNEV  154 (300)
Q Consensus       144 ~~~yi~~v~~l  154 (300)
                      +..|++++..+
T Consensus       101 ~~~yL~~~~~l  111 (114)
T d1mixa1         101 KVRYVKLARSL  111 (114)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhcC
Confidence            99999999876

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.7  Score=30.76  Aligned_cols=64  Identities=14%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             cCCChHHHHHHHHhhcccccccCCCC--CCCccch-----h--------hhHHH-----HHHHHcCCCCHHHHHHHHHHH
Q psy633           91 KKLDSSTLLKFYALYKQATVGQCNID--KPSWYNM-----E--------AKSKY-----NAWNSLGQMAKSEAMSKYIAL  150 (300)
Q Consensus        91 ~~~~~~~~~~~~~~~k~~~~g~~~~~--~p~~~~~-----~--------~~~k~-----~aw~~~~~~~~~~a~~~yi~~  150 (300)
                      -.++.++...+.++.-|+..|+.+..  .++.+..     .        ....|     ..|..+.||+..+|+..|+.+
T Consensus        28 ~~~~~~~a~~Laal~~Qae~GD~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~l~g~s~~~A~~~fL~~  107 (111)
T d1ef1a1          28 IYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI  107 (111)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCcccccHHHHHHHhcCchHHHhcccccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence            46889999999999999999997654  2322111     0        01223     468899999999999999999


Q ss_pred             HHhh
Q psy633          151 LNEV  154 (300)
Q Consensus       151 v~~l  154 (300)
                      +..|
T Consensus       108 ~~~L  111 (111)
T d1ef1a1         108 AQDL  111 (111)
T ss_dssp             HTTS
T ss_pred             HhcC
Confidence            8764

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.17  Score=31.30  Aligned_cols=32  Identities=6%  Similarity=0.230  Sum_probs=27.1

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNID  116 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~  116 (300)
                      ||++++.+.+++++.++|+.|+.+.......+
T Consensus         3 fVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d   34 (75)
T d1x0fa1           3 FVGGLSPDTPEEKIREYFGGFGEVESIELPMD   34 (75)
T ss_dssp             EEESCCSSCCHHHHHHHHHHHSCEEEEECCCC
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCccccccccc
Confidence            89999999999999999999998775554443

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.70  E-value=0.24  Score=30.36  Aligned_cols=31  Identities=3%  Similarity=0.154  Sum_probs=27.0

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ||++++...+++++.++|..|+.+.......
T Consensus         3 fV~nLp~~~te~~l~~~F~~~G~i~~~~~~~   33 (75)
T d2msta_           3 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF   33 (75)
T ss_dssp             EEECCCSSCCHHHHHHHHHTTSCCSEECCBC
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCcceeeeee
Confidence            8999999999999999999999887655544

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.29  E-value=0.21  Score=31.03  Aligned_cols=31  Identities=6%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ||++++..++++++.++|..|+.+.......
T Consensus         4 ~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~   34 (78)
T d1no8a_           4 LVSNLDFGVSDADIQELFAEFGTLKKAAVHY   34 (78)
T ss_dssp             EEESCCTTCCHHHHHHHHHHHSCEEEEEESC
T ss_pred             EEECCCCCCCHHHHHHHHHHhCCCeEEEEEE
Confidence            8999999999999999999999877655443

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.22  Score=30.67  Aligned_cols=31  Identities=6%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      ||++++..++++++.++|..|+.+.......
T Consensus         3 fV~nl~~~~te~~l~~~F~~~G~i~~~~i~~   33 (75)
T d1hd0a_           3 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL   33 (75)
T ss_dssp             EEECCCTTCCHHHHHHHHHTTSCEEEEECCC
T ss_pred             EEeCCCCcCCHHHHHHHHHhhcccccccccc
Confidence            8999999999999999999999887555433

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=0.14  Score=32.11  Aligned_cols=32  Identities=9%  Similarity=0.038  Sum_probs=26.9

Q ss_pred             hhhhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           83 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      ..||++++..++++++.++|..|+.+......
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~   33 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC   33 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEE
Confidence            35899999999999999999999987655443

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.28  E-value=0.14  Score=32.68  Aligned_cols=40  Identities=8%  Similarity=-0.084  Sum_probs=30.3

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCCCCCCCccchh
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNME  124 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~~~p~~~~~~  124 (300)
                      ||++++..++++++.++|+.|+.+.......+.-++..+.
T Consensus         4 fV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~g~afV~f~   43 (87)
T d3begb1           4 VVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFV   43 (87)
T ss_dssp             EEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEES
T ss_pred             EEECCCCcCCHHHHHHHHhhhcccccccccccceeeEEeC
Confidence            8999999999999999999999876555443333444443

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.29  Score=32.36  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             hhhcccccCCChHHHHHHHHhhcccccccCCC
Q psy633           84 DYLPSLVKKLDSSTLLKFYALYKQATVGQCNI  115 (300)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~~  115 (300)
                      .||++++..++++++.++|..|+.+.......
T Consensus        23 lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~   54 (103)
T d1x4ba1          23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMR   54 (103)
T ss_dssp             EEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhCcccceeecc
Confidence            39999999999999999999999888665533

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=0.31  Score=31.02  Aligned_cols=30  Identities=10%  Similarity=0.172  Sum_probs=26.0

Q ss_pred             hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      .||++++..++++++.++|..|+.+.....
T Consensus         8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~   37 (88)
T d1wf0a_           8 VFVGRCTGDMTEDELREFFSQYGDVMDVFI   37 (88)
T ss_dssp             EEEESCCSSSCHHHHHHHSTTTSCCCEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHcCCceEEEE
Confidence            389999999999999999999998775443

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.25  Score=30.68  Aligned_cols=30  Identities=10%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             hhcccccCCChHHHHHHHHhhcccccccCC
Q psy633           85 YLPSLVKKLDSSTLLKFYALYKQATVGQCN  114 (300)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~k~~~~g~~~  114 (300)
                      ||++++.+.+++++.++|..|+.+......
T Consensus         6 fV~nLp~~~te~~l~~~F~~~G~i~~~~~~   35 (79)
T d1l3ka2           6 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIM   35 (79)
T ss_dssp             EEECCTTTCCHHHHHHHHTTTSCEEEEEEE
T ss_pred             EECCCCCcCCHHHHHHHHHHhccccccccc
Confidence            899999999999999999999988765543

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.39  E-value=0.35  Score=29.91  Aligned_cols=30  Identities=7%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             hhhcccccCCChHHHHHHHHhhcccccccC
Q psy633           84 DYLPSLVKKLDSSTLLKFYALYKQATVGQC  113 (300)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~k~~~~g~~  113 (300)
                      .||++++..++++++.++|+.|+.+.....
T Consensus         3 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i   32 (77)
T d1uawa_           3 MFIGGLSWQTTQEGLREYFGQFGEVKECLV   32 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEE
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCcceeee
Confidence            389999999999999999999998765443