Psyllid ID: psy6340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQTK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEccccccccccccEEEEEcccccccccEEccccccccccccccEEEEEccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEccccccEEEEcccccEccccccccEEEEEEHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrlgcmrahtTSHLLNAALRRVLTCTYqkscrvfsdecaldfsvygetlsvDSVAAVEKYINDVIADQVQVdrrhmraseiypddvilidisdkenvisrepccgthvfntghiesctvigyksynhgvrsikcltgessKAAVENGKQLSAAVKQTK
Flexible Loop (DISEMBL)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRaseiypddviliDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQTK
Low Complexity Region (SEG)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQTK
Disordered region (IsUnstruct)
*****MRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT**********************
Disordered Region (DISOPRED)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVK***
Disordered Region (DISEMBL)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE********************
Disordered Region (DISPRO)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
A6LMH9	859	Alanine--tRNA ligase OS=T	yes	N/A	0.886	0.162	0.341	1e-13
A5IMH8	863	Alanine--tRNA ligase OS=T	yes	N/A	0.968	0.177	0.321	5e-13
A4XKP4	881	Alanine--tRNA ligase OS=C	yes	N/A	0.835	0.149	0.346	1e-12
Q9X1B6	863	Alanine--tRNA ligase OS=T	yes	N/A	0.968	0.177	0.321	2e-12
D3ZX08	985	Alanine--tRNA ligase, mit	yes	N/A	0.968	0.155	0.308	2e-12
Q0AQY6	884	Alanine--tRNA ligase OS=M	yes	N/A	0.879	0.157	0.335	2e-12
B1LBS9	863	Alanine--tRNA ligase OS=T	yes	N/A	0.968	0.177	0.321	2e-12
Q14CH7	980	Alanine--tRNA ligase, mit	yes	N/A	0.968	0.156	0.308	3e-12
Q4FMX6	889	Alanine--tRNA ligase OS=P	yes	N/A	0.797	0.141	0.340	1e-11
Q7NXM2	877	Alanine--tRNA ligase OS=C	yes	N/A	0.943	0.169	0.321	1e-11

>sp|A6LMH9|SYA_THEM4 Alanine--tRNA ligase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=alaS PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R    R HT +HLL+AALR+VL T   Q    V  +    DF+ Y   L+ + +  +EK 
Sbjct: 546 RKATARNHTATHLLHAALRKVLGTHVRQAGSLVAPERLRFDFTHYA-ALTKEEIEKIEKM 604

Query: 61  INDVIADQVQVDRRHMRASEI------------YPDDVILIDISDKENVISREPCCGTHV 108
           +N+ I + + V+ + M   E             Y D V ++ I D     S E C GTHV
Sbjct: 605 VNEKILEAIDVNTKVMSYDEAIKNGAMALFEEKYGDKVRVVRIRD----FSEELCGGTHV 660

Query: 109 FNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVEN 146
            NTG I    +I   S + GVR I+ +TG +S   +EN
Sbjct: 661 KNTGEIGLFKIISESSVSAGVRRIEAITGFASLTYLEN 698

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7

>sp|A5IMH8|SYA_THEP1 Alanine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=alaS PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR HT +HLL+AAL++VL     Q    V  D    DF+ + + LS+  +  VE  
Sbjct: 554 REATMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHF-KGLSMAEIEQVENL 612

Query: 61  INDVIADQVQVDRRHMRASEIYPDDVILIDISDK---------ENVISREPCCGTHVFNT 111
           +N+ I + + V+ R+    E     V+ +  ++K            +S+E C GTHV NT
Sbjct: 613 VNEWIMEAIPVEVRYTSYEEAVKSGVVAL-FTEKYGDVVRVVEVPGVSKELCGGTHVSNT 671

Query: 112 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
           G I    +I  +S + GVR I+ +TG S+   + N K+L   +K+
Sbjct: 672 GQIGLFKIISEESVSSGVRRIEAVTGFSTLELLRNQKKLIDQLKE 716

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A4XKP4|SYA_CALS8 Alanine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=alaS PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 18/150 (12%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 59
           +RL  M+ HT +HLL+++LRR+L     Q    V  +    DF+ + E LS + +  +EK
Sbjct: 556 LRLATMKNHTATHLLHSSLRRILGEHATQSGSLVEPERLRFDFAHF-EPLSEEQIVEIEK 614

Query: 60  YINDVIADQVQVDRRH--------MRAS----EIYPDDVILIDISDKENVISREPCCGTH 107
            +ND+I   + V++          M A+    E Y + V +I I D     S E C GTH
Sbjct: 615 MVNDIIQQAIPVEKIQTDLDSAIKMGATALFDEKYSNIVRVIKIGD----FSMELCGGTH 670

Query: 108 VFNTGHIESCTVIGYKSYNHGVRSIKCLTG 137
           V NTG I    +I   S   GVR I+ +TG
Sbjct: 671 VDNTGQIGMFKIISESSVAAGVRRIEAITG 700

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9X1B6|SYA_THEMA Alanine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=alaS PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR HT +HLL+AAL++VL     Q    V  D    DF+ + + LS   +  VE  
Sbjct: 554 REATMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHF-KGLSSAEIEQVEDL 612

Query: 61  INDVIADQVQVDRRHMRASEIYPDDVILIDISDK---------ENVISREPCCGTHVFNT 111
           +N+ I + + V+ R+    E     V+ +  ++K            +S+E C GTHV NT
Sbjct: 613 VNEWIMEAIPVEVRYTSYEEAVKSGVVAL-FTEKYGDVVRVVEVPGVSKELCGGTHVKNT 671

Query: 112 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
           G I    +I  +S + GVR I+ +TG S+   + N K+L   +K+
Sbjct: 672 GQIGLFKIISEESVSSGVRRIEAVTGFSALELLRNQKKLIDQLKE 716

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|D3ZX08|SYAM_RAT Alanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Aars2 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 25/178 (14%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGET-LSVDSVAAVEKY 60
           R+GCM  HT +HLLN ALR+ L  T ++     + E  L F V  +T L+ + +  VE Y
Sbjct: 625 RMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPE-RLRFDVATQTPLTTEQLRTVESY 683

Query: 61  INDVIADQV-----QVDRRH------MRA-SEIYPDDVI-----------LIDISDKENV 97
           + + +         +V   H      +R+  E+YPD V            L   S     
Sbjct: 684 VQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQALAPASQAALQ 743

Query: 98  ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVK 155
            S E CCGTH+ +TG +    +IG +    G+  +  +TGE ++ A E G+ LS  V+
Sbjct: 744 TSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQQAREVGQSLSQEVE 801

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q0AQY6|SYA_MARMM Alanine--tRNA ligase OS=Maricaulis maris (strain MCS10) GN=alaS PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 19/158 (12%)

Query: 2   RLGCMRA-HTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 59
           R   +RA H+ +HL +AALR VL     QK   V  D    DFS + +++S D +AA+E 
Sbjct: 557 RRAAIRANHSATHLAHAALRDVLGAHVTQKGSHVGPDRLRFDFS-HNKSVSADQIAAIEA 615

Query: 60  YINDVIADQVQVDRRHMRAS------------EIYPDDVILI----DISDKENVISREPC 103
            +N VI   V V  R M               E Y D V ++     ++D     S E C
Sbjct: 616 QVNAVIRQNVPVSTREMTPDAAIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELC 675

Query: 104 CGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK 141
            GTHV  TG I    +I   + + G+R I+ +TGE ++
Sbjct: 676 GGTHVERTGDIALFKIIAETAVSSGIRRIEAMTGEGAR 713

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Maricaulis maris (strain MCS10) (taxid: 394221)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|B1LBS9|SYA_THESQ Alanine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=alaS PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR HT +HLL+AAL++VL     Q    V  D    DF+ + + LS   +  VE  
Sbjct: 554 RESTMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHF-KGLSSAEIEQVEDL 612

Query: 61  INDVIADQVQVDRRHMRASEIYPDDVILIDISDK---------ENVISREPCCGTHVFNT 111
           +N+ I + + V+ R+    E     V+ +  ++K            +S+E C GTHV NT
Sbjct: 613 VNEWIMEAIPVEVRYTSYEEAVKSGVVAL-FTEKYGDVVRVVEVPGVSKELCGGTHVKNT 671

Query: 112 GHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
           G I    +I  +S + GVR I+ +TG S+   + N K+L   +K+
Sbjct: 672 GQIGLFKIISEESVSSGVRRIEAVTGFSALELLRNQKKLIDQLKE 716

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Thermotoga sp. (strain RQ2) (taxid: 126740)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 25/178 (14%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETL-SVDSVAAVEKY 60
           R+GCM  HT +HLL+ ALR+ L  T ++     + E  L F V  +TL + + +  VE Y
Sbjct: 620 RMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPE-RLRFDVATQTLLTTEQLRTVESY 678

Query: 61  INDVIADQV-----QVDRRH------MRA-SEIYPDDV-----------ILIDISDKENV 97
           + +V+         +V   H      +R+  E+YPD V            L   S     
Sbjct: 679 VQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPASQAAMH 738

Query: 98  ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVK 155
            S E CCGTH+ +TG +    +IG +    G+  +  +TGE ++ A E G+ LS  V+
Sbjct: 739 TSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQEVE 796

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q4FMX6|SYA_PELUB Alanine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062) GN=alaS PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 9   HTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIAD 67
           H+ +HLL+ ALRRVL     QK   V SD    DFS + + +S + +  +E Y+N +I  
Sbjct: 564 HSATHLLHEALRRVLGEHVTQKGSLVQSDRLRFDFS-HMKPISDEEIRKIEHYVNSIIEK 622

Query: 68  QVQVDRRHMRASEI------------YPDDVILIDISDKE-NVISREPCCGTHVFNTGHI 114
           + +V  R M   E             Y D+V ++ + D+E    S E C GTHV NT  I
Sbjct: 623 KSEVKTRIMTPKEAVENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADI 682

Query: 115 ESCTVIGYKSYNHGVRSIKCL 135
               +I   S   GVR ++ L
Sbjct: 683 GKFKIISQSSIAAGVRRVEAL 703

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Pelagibacter ubique (strain HTCC1062) (taxid: 335992)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q7NXM2|SYA_CHRVO Alanine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=alaS PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 22/171 (12%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R    R H+ +HLL+AALR VL     QK   V  +    DF+ +GE ++   +A +E+ 
Sbjct: 558 RQASARNHSATHLLHAALRHVLGGHVVQKGSLVNPERTRFDFA-HGEAVTAAQIAELERV 616

Query: 61  INDVIAD--QVQVDRRHMRAS----------EIYPDDVILIDISDKENVISREPCCGTHV 108
           +N VIA   +V+ +   M A+          E Y D+V ++ + D     S E C GTHV
Sbjct: 617 VNHVIAANYEVKAELMSMEAAQKSGAMMLFGEKYGDEVRVLTMGD----FSAELCGGTHV 672

Query: 109 FNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG----KQLSAAVK 155
             TG I    ++       GVR I+ +TGE + A ++      K+ +AA+K
Sbjct: 673 KRTGDIGLFKIVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALK 723

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
91087359	1044	PREDICTED: similar to mitochondrial alan	0.949	0.143	0.365	4e-20
270010617	977	hypothetical protein TcasGA2_TC010044 [T	0.949	0.153	0.365	4e-20
307176881	1005	Alanyl-tRNA synthetase, cytoplasmic [Cam	0.987	0.155	0.301	9e-18
322795678	1018	hypothetical protein SINV_04921 [Solenop	0.949	0.147	0.306	6e-17
348545288	1039	PREDICTED: alanyl-tRNA synthetase, mitoc	0.962	0.146	0.354	2e-16
307212580	1019	Alanyl-tRNA synthetase, cytoplasmic [Har	0.860	0.133	0.311	2e-15
321466736	992	hypothetical protein DAPPUDRAFT_54067 [D	0.905	0.144	0.314	2e-15
328701423	974	PREDICTED: alanyl-tRNA synthetase, mitoc	0.936	0.151	0.349	5e-15
332026963	1085	Alanyl-tRNA synthetase, cytoplasmic [Acr	0.917	0.133	0.312	2e-14
224047577	986	PREDICTED: alanine--tRNA ligase, mitocho	0.962	0.154	0.333	2e-13

>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase CG4633-PA [Tribolium castaneum]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
            RL  MR HT  HLLN+ L++V   T QKS +V  +   LD  ++ E LS+D +  VE  
Sbjct: 673 FRLKNMRNHTAVHLLNSVLKKVKGATCQKSSKVTQNYFNLDVGIFAEKLSLDELELVEST 732

Query: 61  INDVIADQVQV-------------DRRHMRASEIYPDDVI-LIDISDKENVISREPCCGT 106
           I  VI  ++ V             D   +   E+YP+  I ++++   E  +SREPCCGT
Sbjct: 733 ITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIRVVEVKGGEGFLSREPCCGT 792

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 150
           HV NT  IE   ++  KS      SI  +TG+ +K A  NG  L
Sbjct: 793 HVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNGTHL 836

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010617|gb|EFA07065.1| hypothetical protein TcasGA2_TC010044 [Tribolium castaneum]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
            RL  MR HT  HLLN+ L++V   T QKS +V  +   LD  ++ E LS+D +  VE  
Sbjct: 606 FRLKNMRNHTAVHLLNSVLKKVKGATCQKSSKVTQNYFNLDVGIFAEKLSLDELELVEST 665

Query: 61  INDVIADQVQV-------------DRRHMRASEIYPDDVI-LIDISDKENVISREPCCGT 106
           I  VI  ++ V             D   +   E+YP+  I ++++   E  +SREPCCGT
Sbjct: 666 ITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIRVVEVKGGEGFLSREPCCGT 725

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 150
           HV NT  IE   ++  KS      SI  +TG+ +K A  NG  L
Sbjct: 726 HVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNGTHL 769

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           +R+G M+ HT +HLLNAAL++V+   YQ S  V +D     F+ +GE L++D +  +E  
Sbjct: 639 IRIGAMKHHTATHLLNAALKQVMQVVYQSSSTVNADNLKFQFNSFGEQLTLDQMRIIEHC 698

Query: 61  INDVIADQVQV-------------DRRHMRASEIYPDDVILIDISDKENVISREPCCGTH 107
           IN++I  +  +             D   +   EIYP   I +   +  N+ S+E CCGTH
Sbjct: 699 INNIIQTRAAITVETLNLLELLKQDDITLIPGEIYPYTGIKVIEINANNLKSKETCCGTH 758

Query: 108 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
           V NT  ++    + Y S     R++K + G+ +    + G+++S  + +
Sbjct: 759 VHNTSVLQHFCFLTYTSKGTTKRTVKAIVGQEALRMKQAGERISQRIAE 807

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           +R+G M+ HT +HLLNAAL++++   YQ+ C V  D     F+ +GE L+   + A+E  
Sbjct: 651 IRIGAMKHHTATHLLNAALKQIMQVIYQRGCTVDMDSLKFQFNSFGEQLTSQQMKAIEVC 710

Query: 61  INDVIADQVQVDRRHMRA-------------SEIYPDDVILIDISDKENVISREPCCGTH 107
           IN++I   V      + +              EIYP   I I   +  ++ ++E CCGTH
Sbjct: 711 INNIIQSHVATTVHTVNSLELLKQNDVTLVPGEIYPYTGIKIVEINTNDLKAKETCCGTH 770

Query: 108 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 150
           V NTG ++    + Y S     R+IK + G  +  + + G+++
Sbjct: 771 VHNTGVLQHFCFLTYTSKGATKRTIKAVVGPEALRSKQAGERI 813

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348545288|ref|XP_003460112.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Oreochromis niloticus]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 23/175 (13%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQ-KSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           RL CM  HT +H+LN ALR+VL  + Q +   V +D    DFSV G +LSV  +  VE+ 
Sbjct: 678 RLSCMVKHTATHILNFALRKVLGASVQQRGSHVSADRLRFDFSVKG-SLSVSQLQQVERC 736

Query: 61  INDVIADQVQVDRRHM---RA---------SEIYPDDVILIDIS---------DKENVIS 99
           IND+I+    V  + +   RA          E+YPD V ++ +            E   S
Sbjct: 737 INDIISANQIVHSQELPLQRARGISGLRTVDEVYPDPVRVVSVEMPVTELLDERSERQTS 796

Query: 100 REPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAV 154
            E CCGTH+  TG IE   ++  K    G+  I  +TG+ +  A E G  LS  V
Sbjct: 797 VELCCGTHLLQTGAIEDLVIVSEKQLVKGISRIVAVTGQEAARAREAGHVLSQDV 851

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 15/151 (9%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           +R+  M+ HT +HLLNAA++ V+   YQ++C V  +     F+ +GE L+++ +  +E  
Sbjct: 657 IRVDTMKHHTAAHLLNAAMKEVMHTVYQRACTVDMNNLKFQFNPFGEKLTLEQMRMIENR 716

Query: 61  INDVIADQVQVDRRHMRA-------------SEIYP-DDVILIDISDKENVISREPCCGT 106
           IN+VI   V V  + + +              EIYP  D+ +++I + E++ ++E CCGT
Sbjct: 717 INNVIQSHVAVTVQTLNSLQLLGQDDITLVPGEIYPYTDIRIVEI-NAEDLKAKEACCGT 775

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTG 137
           HV NTG ++    + Y S       +K + G
Sbjct: 776 HVHNTGVLQHFYFVTYTSKGAAKCDVKAVVG 806

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466736|gb|EFX77730.1| hypothetical protein DAPPUDRAFT_54067 [Daphnia pulex]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 16/159 (10%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYI 61
           RL  M  HT +HLL+AA++ +L  T QKS  V  +    +F ++    +++ ++  E  +
Sbjct: 621 RLNTMANHTATHLLHAAIKDILKVTCQKSSYVTPEHFRFEFGLFQSEFTLEMISQAESSV 680

Query: 62  NDVIADQVQVDRRHMR-------------ASEIYPDDVILIDI---SDKENVISREPCCG 105
            + I  ++ VDR  +                E YPD V +I +   S K+  IS EPCCG
Sbjct: 681 RNWICQRLAVDRLMLPLHQAVSLDGITLVPGESYPDMVSVIRVAQESGKDEAISLEPCCG 740

Query: 106 THVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAV 144
           THV NT  +E   ++  KS   G RS++ +T  ++K ++
Sbjct: 741 THVRNTADLEEFAILSVKSAGIGSRSVRAVTRATAKQSL 779

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701423|ref|XP_003241593.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYI 61
           RLG MRAH++ H+LN+ L   L  T Q S  V  D  +  F+++G+T S      +E+ +
Sbjct: 612 RLGLMRAHSSVHILNSVLNLYLVVTTQLSSCVKKDFMSFTFALFGQTFSPKDALVIEEKV 671

Query: 62  NDVIADQVQVDRRHMRAS------------EIYPDDVILIDISDK--ENVISREPCCGTH 107
             VI   V V R  + ++            E+YPD+V LID+     ++ ISRE CCGTH
Sbjct: 672 KSVIQSAVSVKRTTVTSNDLNQINVTLLPGEVYPDEVHLIDMYSNVDDSYISREACCGTH 731

Query: 108 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 150
           V NT  +    ++ YK  N    +I  +TG     A   G+QL
Sbjct: 732 VQNTLDVIDFCIVQYKC-NINECTIMAVTGPLCTNARVFGQQL 773

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 18/163 (11%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           +R+G M+ HT +HLLNAAL++V+   YQ+ C V  D     F+  GE L+++ +  +E  
Sbjct: 657 IRIGAMKHHTAAHLLNAALKQVMQVIYQRGCTVDMDSLKFQFNSLGEQLTLEQMKTIEDC 716

Query: 61  INDVIADQ-------------VQVDRRHMRASEIYP-DDVILIDISDKENVISREPCCGT 106
           IN+VI  +             ++ +   +   EIYP  D+ +++I +  ++ ++E CCGT
Sbjct: 717 INNVIQSRAVTTVQTVNSLELLKQNDVMLLPGEIYPYTDIKIVEI-NTNDLKAKETCCGT 775

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESS---KAAVEN 146
           HV NT  ++    + Y S     R +K + G  +   K A EN
Sbjct: 776 HVHNTDVLQHFCFLTYTSKGATKRIVKAVVGPEALRMKQAGEN 818

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224047577|ref|XP_002187191.1| PREDICTED: alanine--tRNA ligase, mitochondrial [Taeniopygia guttata]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 25/177 (14%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           RL CMR HT +HLL+ ALRRVL   T Q+   V + +   DF   G  ++V+ +  VE+ 
Sbjct: 626 RLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDTKGH-VTVEQLQQVEQV 684

Query: 61  INDVIADQ---------VQVDRR--HMRA-SEIYPDDVILIDIS-DKENVI--------- 98
           + D+I            + + RR   +RA  E YPD V ++ +    ENV+         
Sbjct: 685 VRDLIQKNEVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSLGVPVENVLTCDSKAAMQ 744

Query: 99  -SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAV 154
            S E CCGTH+  TG +E   +I  +    G+  +  +TG  +K A E G+ L+  V
Sbjct: 745 TSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRAKEAREVGQCLAVEV 801

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
UNIPROTKB|F1N8U6	816	AARS2 "Uncharacterized protein	0.398	0.077	0.415	2.6e-14
UNIPROTKB|F1NC50	991	AARS2 "Uncharacterized protein	0.398	0.063	0.415	4.2e-14
FB|FBgn0028962	1012	Aats-ala-m "mitochondrial alan	0.898	0.140	0.284	2.3e-12
ZFIN|ZDB-GENE-041008-213	1022	aars2 "alanyl-tRNA synthetase	0.569	0.088	0.317	4.7e-12
MGI|MGI:2681839	980	Aars2 "alanyl-tRNA synthetase	0.481	0.077	0.310	3.9e-11
RGD|1310617	985	Aars2 "alanyl-tRNA synthetase	0.481	0.077	0.310	4.7e-11
UNIPROTKB|Q5JTZ9	985	AARS2 "Alanine--tRNA ligase, m	0.481	0.077	0.310	4e-10
UNIPROTKB|F1RQT7	985	AARS2 "Uncharacterized protein	0.481	0.077	0.298	3.7e-09
UNIPROTKB|F1PA93	985	AARS2 "Uncharacterized protein	0.481	0.077	0.298	4e-09
TIGR_CMR|BA_4616	880	BA_4616 "alanyl-tRNA synthetas	0.848	0.152	0.296	8.3e-09

UNIPROTKB|F1N8U6 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:     2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
             RL CM  HT +HLLN ALR VL   T Q+   V +++   DF++ G  ++V+ +  VE+ 
Sbjct:   625 RLACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGP-VTVEQLQQVEQV 683

Query:    61 INDVI 65
             + DVI
Sbjct:   684 VQDVI 688

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|F1NC50 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:     2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
             RL CM  HT +HLLN ALR VL   T Q+   V +++   DF++ G  ++V+ +  VE+ 
Sbjct:   630 RLACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGP-VTVEQLQQVEQV 688

Query:    61 INDVI 65
             + DVI
Sbjct:   689 VQDVI 693

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA

FB|FBgn0028962 Aats-ala-m "mitochondrial alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 45/158 (28%), Positives = 77/158 (48%)

Query:     9 HTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIAD 67
             HT +HLLNAA+R +    TYQ S  V SD+C L+  + G+ +    V  +E  IN VI  
Sbjct:   656 HTATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICS 715

Query:    68 QVQVDRRHMRASEI-------------YPDDVI-LIDISDKE-NVISREPCCGTHVFNTG 112
                V+ + + A+E+             YP+  + L+++   E  + S+E CCGTH  NT 
Sbjct:   716 AAPVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTS 775

Query:   113 HIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQL 150
              +    ++  K  N    +   + G++++  ++    L
Sbjct:   776 ELSCFCIVNLKQTNRARFAFTAVAGQAAENVLKTAALL 813

GO:0005739 "mitochondrion" evidence=ISS

GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS

GO:0004813 "alanine-tRNA ligase activity" evidence=ISS;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-041008-213 aars2 "alanyl-tRNA synthetase 2, mitochondrial (putative)" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
 Identities = 33/104 (31%), Positives = 51/104 (49%)

Query:     2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
             RLGCM  HT +H+LN ALR +L     Q+     ++    DFSV G TL+V  +  VE+ 
Sbjct:   653 RLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKG-TLTVSELQKVEEL 711

Query:    61 INDVIADQVQVDRRHMRAS------------EIYPDDVILIDIS 92
             + ++I     V    +  S            E+YPD V ++ ++
Sbjct:   712 VLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVA 755

GO:0000166 "nucleotide binding" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2681839 Aars2 "alanyl-tRNA synthetase 2, mitochondrial (putative)" [Mus musculus (taxid:10090)]

 Score = 108 (43.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
 Identities = 27/87 (31%), Positives = 43/87 (49%)

Query:    80 EIYPDDVILIDI-----------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 128
             E+YPD V ++ +           S      S E CCGTH+ +TG +    +IG +    G
Sbjct:   710 EVYPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKG 769

Query:   129 VRSIKCLTGESSKAAVENGKQLSAAVK 155
             +  +  +TGE ++ A E G+ LS  V+
Sbjct:   770 ITRLLAITGEQAQQAREVGQSLSQEVE 796

GO:0000049 "tRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006412 "translation" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=ISO

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=ISO

RGD|1310617 Aars2 "alanyl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 27/87 (31%), Positives = 43/87 (49%)

Query:    80 EIYPDDVILIDI-----------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 128
             E+YPD V ++ +           S      S E CCGTH+ +TG +    +IG +    G
Sbjct:   715 EVYPDPVRVVSVGVPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKG 774

Query:   129 VRSIKCLTGESSKAAVENGKQLSAAVK 155
             +  +  +TGE ++ A E G+ LS  V+
Sbjct:   775 ITRLLAITGEQAQQAREVGQSLSQEVE 801

GO:0000049 "tRNA binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO;ISS

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA;ISO

UNIPROTKB|Q5JTZ9 AARS2 "Alanine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
 Identities = 27/87 (31%), Positives = 42/87 (48%)

Query:    80 EIYPDDVILIDI-----------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 128
             E+YPD V ++ +           S      S E CCGTH+  TG +    +IG +  + G
Sbjct:   715 EVYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKG 774

Query:   129 VRSIKCLTGESSKAAVENGKQLSAAVK 155
                +  +TGE ++ A E G+ L+  VK
Sbjct:   775 TTRLLAVTGEQAQQARELGQSLAQEVK 801

GO:0000049 "tRNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0004813 "alanine-tRNA ligase activity" evidence=IMP

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IMP

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IMP

UNIPROTKB|F1RQT7 AARS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 103 (41.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
 Identities = 26/87 (29%), Positives = 41/87 (47%)

Query:    80 EIYPDDVILIDI-----------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 128
             E+YPD V ++ +           S      S E CCGTH+  TG I    ++G +    G
Sbjct:   715 EVYPDPVRVVSVGVPVAHALEPASQAALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKG 774

Query:   129 VRSIKCLTGESSKAAVENGKQLSAAVK 155
                +  +TGE ++ A E G+ L+  V+
Sbjct:   775 TTRLLAITGEQARQAREVGQSLAQEVE 801

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PA93 AARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 101 (40.6 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
 Identities = 26/87 (29%), Positives = 41/87 (47%)

Query:    80 EIYPDDVILIDI-----------SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHG 128
             E+YPD V ++ +           S      S E CCGTH+  TG +    +IG +    G
Sbjct:   715 EVYPDPVRVVSVGVPVARALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKG 774

Query:   129 VRSIKCLTGESSKAAVENGKQLSAAVK 155
                +  +TGE ++ A E G+ L+  V+
Sbjct:   775 TVRLLAVTGEQAQQAREVGQSLAQEVE 801

GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TIGR_CMR|BA_4616 BA_4616 "alanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 144 (55.7 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 45/152 (29%), Positives = 73/152 (48%)

Query:     2 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
             R   ++ HT +HLL+ AL+ VL T   Q    V S+    DFS +G+ +  D +  +E+ 
Sbjct:   560 RSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQ-VQADELEKIERI 618

Query:    61 INDVIADQVQVD--------RRHMRA----SEIYPDDVILIDISDKENVISREPCCGTHV 108
             +N+ I + + V+         + M A     E Y D V ++ + D     S E C G HV
Sbjct:   619 VNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQVGD----YSLELCGGCHV 674

Query:   109 FNTGHIESCTVIGYKSYNHGVRSIKCLTGESS 140
              NT  I    ++       G+R I+ +TG+S+
Sbjct:   675 DNTASIGIFKIVAESGIGAGIRRIEAVTGKSA 706

GO:0004813 "alanine-tRNA ligase activity" evidence=ISS

GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
COG0013	879	COG0013, AlaS, Alanyl-tRNA synthetase [Translation	2e-22
PLN02900	936	PLN02900, PLN02900, alanyl-tRNA synthetase	5e-19
PRK00252	865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	8e-19
TIGR00344	851	TIGR00344, alaS, alanine--tRNA ligase	6e-18
PRK13902	900	PRK13902, alaS, alanyl-tRNA synthetase; Provisiona	2e-11
PRK01584	594	PRK01584, PRK01584, alanyl-tRNA synthetase; Provis	6e-11
COG2872	241	COG2872, COG2872, Predicted metal-dependent hydrol	6e-10
TIGR03683	902	TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase	9e-10
pfam07973	44	pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt	2e-05
smart00863	43	smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn	4e-04

>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 18/169 (10%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR HT +HLL+AALR+VL    +Q    V  ++   DFS + + L+ + +  +E+ 
Sbjct: 560 RRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFS-HYKALTAEELKEIERL 618

Query: 61  INDVIADQVQVDRRHM----------RA--SEIYPDDVILIDISDKENVISREPCCGTHV 108
           +N++I + + V    M           A   E Y D+V +++I D     S E C GTHV
Sbjct: 619 VNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGD----FSVELCGGTHV 674

Query: 109 FNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQT 157
            NTG I    +I  +    GVR I+ +TGE++   ++  + L   +   
Sbjct: 675 SNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASL 723

Length = 879

>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase

 Score = 82.4 bits (204), Expect = 5e-19
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 22/165 (13%)

Query: 9   HTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIAD 67
           HT +HLLN+AL+ VL     QK   V  ++   DFS +G+ ++ + +  VE  +N+ I D
Sbjct: 598 HTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFS-HGKPMTPEELREVESLVNEWIGD 656

Query: 68  QVQVDRRHM-----------RA--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHI 114
            + V+ + M           RA   E YPD V ++ +       S E C GTHV NT   
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---YSMELCGGTHVSNTAEA 713

Query: 115 ESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG----KQLSAAVK 155
           E+  ++  +    G+R I  +TG ++  A+       ++L +A+K
Sbjct: 714 EAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALK 758

Length = 936

>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed

 Score = 81.7 bits (203), Expect = 8e-19
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 27/173 (15%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL----TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAV 57
           R    R H+ +HLL+AALR VL    T   Q    V  D    DFS + E L+ + +  +
Sbjct: 546 RRAIARNHSATHLLHAALREVLGEHVT---QAGSLVAPDRLRFDFS-HFEALTPEELRKI 601

Query: 58  EKYINDVIADQVQVDRRHM-----RAS-------EIYPDDVILIDISDKENVISREPCCG 105
           E  +N+ I + + V+   M     +         E Y D+V ++ I D     S E C G
Sbjct: 602 EDLVNEKIRENLPVETEEMSIEEAKKMGAMALFGEKYGDEVRVVSIGD----FSIELCGG 657

Query: 106 THVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQTK 158
           THV NTG I    ++       GVR I+ +TGE   AA+E   +  A +K+  
Sbjct: 658 THVSNTGDIGLFKIVSESGVAAGVRRIEAVTGE---AALEYLNEQEALLKELA 707

Length = 865

>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase

 Score = 79.4 bits (196), Expect = 6e-18
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 59
            RL  MR H+ +HLL+AAL++VL    +Q    V   +   DFS Y   L+ + +  +E 
Sbjct: 552 RRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHY-RALTREELEKIED 610

Query: 60  YINDVIADQVQVDRRHM-RA-----------SEIYPDDVILIDISDKENVISREPCCGTH 107
            +N+ I   + +    M               E Y + V ++ + D    +S E C GTH
Sbjct: 611 LVNEQILANIPIKVIFMDLDEAKAKGAFALFGEKYGEKVRVVSVGD----VSVELCGGTH 666

Query: 108 VFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVEN 146
           V NTG I    ++       GVR I+ +TG ++   +  
Sbjct: 667 VRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNE 705

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP) [Protein synthesis, tRNA aminoacylation]. Length = 851

>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 20/128 (15%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR HT +H++ AA R+VL    +Q   +   D+  LD + Y + ++ + V  +E+ 
Sbjct: 586 RYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHY-KRITREEVKEIERL 644

Query: 61  INDVIADQVQVDRRHMRASE--------IY-----PDDVI-LIDISDKENVISREPCCGT 106
            N+++ +   V    M  +E        +Y     P   I +++I D  +V   E C GT
Sbjct: 645 ANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDW-DV---EACGGT 700

Query: 107 HVFNTGHI 114
           HV NTG I
Sbjct: 701 HVSNTGEI 708

Length = 900

>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 18/140 (12%)

Query: 7   RAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVI 65
           + HT +HLL+ ALR VL     QK   + ++    DFS + E ++ D +  VE  +N  I
Sbjct: 455 KLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFS-HPEKMTDDEIKKVEDIVNLQI 513

Query: 66  ADQVQVDRRHMRASEI------------YPDDVILIDISDKENVISREPCCGTHVFNTGH 113
            + + V +  M   E             Y D V + +I       S+E C G HV NTG 
Sbjct: 514 KNDLSVKKEVMSLEEAREKGAMALFGEKYEDIVKVYEIDG----FSKEVCGGPHVENTGE 569

Query: 114 IESCTVIGYKSYNHGVRSIK 133
           + +  +   +S + GVR I+
Sbjct: 570 LGTFKIQKEQSSSSGVRRIR 589

Length = 594

>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 6   MRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSV----AAVEKYI 61
           MR HT  HLL+A L +V          +  D   +DF        ++ V      + K  
Sbjct: 96  MRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGEDTEDEIEEVEALANELVKEN 154

Query: 62  NDVIADQVQVDRRHMR------ASEIYPD---DVILIDISDKENVISREPCCGTHVFNTG 112
             VI   +  +            +++ PD    + +++I D    I  +PC GTHV NTG
Sbjct: 155 LPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGD----IDVQPCGGTHVKNTG 210

Query: 113 HIESCTVIGYKSYNHGVRSIKCLTGESSKA 142
            I    ++  +    G R +    GE + A
Sbjct: 211 EIGEIKILKTEKKGKGNRRVYFTLGERASA 240

Length = 241

>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           RL  MR HT +H+L AA RRVL    +Q   +  +D+  LD + Y + +S + +  +E+ 
Sbjct: 590 RLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHY-KRISEEEIKEIERL 648

Query: 61  INDVIADQVQVDRRHM---RASEIY----------PDDVI-LIDISDKENVISREPCCGT 106
            N ++ +   V  + M    A + Y          P   I +++I D       + C GT
Sbjct: 649 ANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIED----WDVQACGGT 704

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 145
           H  NTG I    ++  +    GV  I+   GE++   ++
Sbjct: 705 HCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQ 743

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. Length = 902

>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 98  ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 132
              + C GTHV NTG I +  ++   S N G++ I
Sbjct: 9   FDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRI 43

The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44

>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 98  ISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSI 132
            S E C GTHV NTG I +  ++       G++ I
Sbjct: 9   FSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG0013	879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	100.0
PLN02900	936	alanyl-tRNA synthetase	100.0
PRK13902	900	alaS alanyl-tRNA synthetase; Provisional	100.0
TIGR03683	902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	100.0
TIGR00344	851	alaS alanine--tRNA ligase. The model describes ala	100.0
PRK00252	865	alaS alanyl-tRNA synthetase; Reviewed	100.0
COG2872	241	Predicted metal-dependent hydrolases related to al	100.0
KOG0188|consensus	895		100.0
PRK01584	594	alanyl-tRNA synthetase; Provisional	100.0
PLN02961	223	alanine-tRNA ligase	99.97
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.92
KOG2105|consensus	415		99.91
PLN02837	614	threonine-tRNA ligase	99.91
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.89
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.88
PLN02908	686	threonyl-tRNA synthetase	99.85
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.82
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	99.76
PF07973	44	tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco	99.73
smart00863	44	tRNA_SAD Threonyl and Alanyl tRNA synthetase secon	99.61
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	98.85
KOG1637|consensus	560		97.96

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-39  Score=283.75  Aligned_cols=151  Identities=34%  Similarity=0.527  Sum_probs=145.3

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+++|++|||+|||.+||++++| +++|+|+.+.++..||||..+++ +|.+++++||+.+|++|.++.|+.       
T Consensus       559 rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~-it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~  637 (879)
T COG0013         559 RRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKA-LTAEELKEIERLVNEIIRENLPVKTEEMDLD  637 (879)
T ss_pred             HHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCC-CCHHHHHHHHHHHHHHHHcCCceeEEEccHH
Confidence            799999999999999999999999 99999999999999999999988 999999999999999999999753       


Q ss_pred             -----HHHHhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340          73 -----RRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG  147 (158)
Q Consensus        73 -----~~~~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~  147 (158)
                           +++++|++.|++.||||+||+    +++++||||||+|||+||.|+|++.++++.|++||++++|..|.+++++.
T Consensus       638 eAk~~Ga~alfGekY~~~VRVV~ig~----~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~  713 (879)
T COG0013         638 EAKAKGAMALFGEKYGDEVRVVEIGD----FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQ  713 (879)
T ss_pred             HHHHhChHhhcCCcCCCeEEEEEECC----ceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHH
Confidence                 468899999999999999999    99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy6340         148 KQLSAAVKQ  156 (158)
Q Consensus       148 ~~~~~~~~~  156 (158)
                      ..++++++.
T Consensus       714 ~~~l~~~a~  722 (879)
T COG0013         714 EDLLKEIAS  722 (879)
T ss_pred             HHHHHHHHH
Confidence            999999874

>PLN02900 alanyl-tRNA synthetase

Probab=100.00  E-value=7.1e-37  Score=274.03  Aligned_cols=152  Identities=30%  Similarity=0.439  Sum_probs=141.1

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++|++++|| ++++.|+++.++++|+||..+++ ++++++.+||+.||++|.++.|+.       
T Consensus       590 rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNe~I~~n~pV~~~~~~~e  668 (936)
T PLN02900        590 RRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP-MTPEELREVESLVNEWIGDALPVEAKEMPLA  668 (936)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence            799999999999999999999999 78889999999999999998777 999999999999999999999763       


Q ss_pred             H------HHHhhcccCCCcEEEEEeCCCCcee-eeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340          73 R------RHMRASEIYPDDVILIDISDKENVI-SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE  145 (158)
Q Consensus        73 ~------~~~~~~~~~~~~~riv~i~~~~~~~-~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~  145 (158)
                      +      ++.++++.|++.+|||+|++    + +.++||||||.||++||.|+|+++++.++|++||++++|++|.+++.
T Consensus       669 EA~~~~g~~~~f~e~y~~~VRVV~Ig~----~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~  744 (936)
T PLN02900        669 DAKRINGLRAVFGEKYPDPVRVVSVGG----VYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAIN  744 (936)
T ss_pred             HHhhccChHhhcCCCCCCcEEEEEECC----ccceeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHH
Confidence            2      33456778999999999999    8 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q psy6340         146 NGKQLSAAVKQT  157 (158)
Q Consensus       146 ~~~~~~~~~~~~  157 (158)
                      +...++.+++.+
T Consensus       745 ~~~~~l~~l~~~  756 (936)
T PLN02900        745 AADSLERELDSA  756 (936)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>PRK13902 alaS alanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.1e-36  Score=272.29  Aligned_cols=151  Identities=24%  Similarity=0.399  Sum_probs=138.4

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++|++++|| ++++.|++++++.+|+||..++. ++++++.+||+.+|++|.+++|+.       
T Consensus       585 rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~  663 (900)
T PRK13902        585 RRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKR-ITREEVKEIERLANEIVMENRPVKVEWMDRN  663 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEecCHH
Confidence            799999999999999999999999 89999999999999999998776 999999999999999999999863       


Q ss_pred             HHHH-----hh--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340          73 RRHM-----RA--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE  145 (158)
Q Consensus        73 ~~~~-----~~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~  145 (158)
                      +|..     ++  ++.|.+.+|||+|++    +|.++||||||.||++||.|+|++.++.++|++||++++|++|+++++
T Consensus       664 eA~~~~~~~l~~~g~~~~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~  739 (900)
T PRK13902        664 EAEQKYGFRLYQGGVPPGKTIRVVEIGD----WDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQ  739 (900)
T ss_pred             HHHhccchhhhccCCCCCCeEEEEEECC----eeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHH
Confidence            3322     12  245667899999999    999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy6340         146 NGKQLSAAVKQ  156 (158)
Q Consensus       146 ~~~~~~~~~~~  156 (158)
                      +.++.+.+++.
T Consensus       740 ~~~~~l~~~a~  750 (900)
T PRK13902        740 ELEDLLKEAAE  750 (900)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase

Probab=100.00  E-value=1.1e-36  Score=272.36  Aligned_cols=151  Identities=26%  Similarity=0.399  Sum_probs=138.0

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++|++++|| ++++.|+++.++.+++||..++. ++++++.+||+.+|++|.+++|+.       
T Consensus       589 rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~  667 (902)
T TIGR03683       589 RRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKR-ISEEEIKEIERLANRIVMENRPVSVKWMDRN  667 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence            799999999999999999999999 89999999999999999998776 999999999999999999999863       


Q ss_pred             HHHH-----hh--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHH
Q psy6340          73 RRHM-----RA--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE  145 (158)
Q Consensus        73 ~~~~-----~~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~  145 (158)
                      +|..     ++  +..|.+.+|||+||+    +|.+|||||||.||++||.|+|++.++.++|++||++++|++|+++++
T Consensus       668 eA~~~~~~~l~~~~~~~~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~  743 (902)
T TIGR03683       668 EAEQKYGFRLYQGGVPPGREIRVVEIED----WDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQ  743 (902)
T ss_pred             HHHhcCchhhhccCCCCCCeEEEEEECC----eeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHH
Confidence            3322     22  234567899999999    999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy6340         146 NGKQLSAAVKQ  156 (158)
Q Consensus       146 ~~~~~~~~~~~  156 (158)
                      +.++++++++.
T Consensus       744 ~~~~~l~~~a~  754 (902)
T TIGR03683       744 ELEDLLRESSD  754 (902)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.

>TIGR00344 alaS alanine--tRNA ligase

Probab=100.00  E-value=1.1e-36  Score=271.56  Aligned_cols=151  Identities=29%  Similarity=0.468  Sum_probs=139.4

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++||+++|| .+++.|++++++++|+||..+++ ++++++.+||+.||++|++++|+.       
T Consensus       552 rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNelI~~n~pV~~~~~~~e  630 (851)
T TIGR00344       552 RRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA-LTREELEKIEDLVNEQILANIPIKVIFMDLD  630 (851)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-CCHHHHHHHHHHHHHHHHhCCceEEEEeCHH
Confidence            699999999999999999999998 88999999999999999998766 999999999999999999999863       


Q ss_pred             HHH-----HhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340          73 RRH-----MRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG  147 (158)
Q Consensus        73 ~~~-----~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~  147 (158)
                      +|.     .++++.|++.+|||+||+    ++.+|||||||.||++||.|+|++.++.++|++||++++|++|++++.+.
T Consensus       631 eA~~~~~~~~~~e~y~~~VRVV~Ig~----~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~  706 (851)
T TIGR00344       631 EAKAKGAFALFGEKYGEKVRVVSVGD----VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQ  706 (851)
T ss_pred             HHHhcchhhhcCCCCCCeEEEEEECC----eeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHH
Confidence            222     234567778899999999    99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy6340         148 KQLSAAVKQ  156 (158)
Q Consensus       148 ~~~~~~~~~  156 (158)
                      ++.+.+++.
T Consensus       707 ~~~l~~l~~  715 (851)
T TIGR00344       707 EDKLKELAD  715 (851)
T ss_pred             HHHHHHHHH
Confidence            999999874

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.5e-36  Score=271.32  Aligned_cols=151  Identities=32%  Similarity=0.474  Sum_probs=139.4

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++|++++|| ++++.|++++++++++||..+++ ++++++.+||+.||++|.+++|+.       
T Consensus       545 rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~-lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~  623 (865)
T PRK00252        545 RRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEA-LTPEELRKIEDLVNEKIRENLPVETEEMSIE  623 (865)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence            799999999999999999999998 68889999999999999998766 999999999999999999999863       


Q ss_pred             HHH-----HhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340          73 RRH-----MRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG  147 (158)
Q Consensus        73 ~~~-----~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~  147 (158)
                      +|.     .++++.|++.+|||.||+    ++.+|||||||+||++||.|+|++.++.++|++||++++|++|++++.+.
T Consensus       624 eA~~~~~~~~~~~~y~~~VRVV~Ig~----~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~  699 (865)
T PRK00252        624 EAKKMGAMALFGEKYGDEVRVVSIGD----FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQ  699 (865)
T ss_pred             HHHhCCchhhccccCCCeEEEEEECC----ceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHH
Confidence            332     245567888999999999    99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy6340         148 KQLSAAVKQ  156 (158)
Q Consensus       148 ~~~~~~~~~  156 (158)
                      ++++.++++
T Consensus       700 ~~~l~~~~~  708 (865)
T PRK00252        700 EALLKELAA  708 (865)
T ss_pred             HHHHHHHHH
Confidence            999999875

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

Probab=100.00  E-value=4.1e-33  Score=216.41  Aligned_cols=133  Identities=27%  Similarity=0.408  Sum_probs=117.7

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R   73 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~   73 (158)
                      |||+|||+|||+|||++++.+.++ +...|++++++.+++||+.+.   +++++.++++++|++|+++.++.       +
T Consensus        91 rRy~~mr~HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e~---~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE  166 (241)
T COG2872          91 RRYRHMRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGED---TEDEIEEVEALANELVKENLPVIIYFIPREE  166 (241)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccc-ceeecceeccccccccccccc---chhhHHHHHHHHHHHHHcCCeeeeeecCHHH
Confidence            799999999999999999999998 888899999999999999763   68899999999999999999753       3


Q ss_pred             HHHhhcc-----cC----CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHH
Q psy6340          74 RHMRASE-----IY----PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK  141 (158)
Q Consensus        74 ~~~~~~~-----~~----~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~  141 (158)
                      +...++.     ..    +..+|+|+|++    +|.+|||||||+||+|||.|+|++.++++++.+||+|.+|+++.
T Consensus       167 ~~~~p~~~~~~~~~~~~~~g~iRiV~I~d----id~qpCgGtHVk~T~EIG~Iki~k~e~k~k~~~Rv~f~~~~~~~  239 (241)
T COG2872         167 AEKLPGLVKLKNKVPPDVEGKIRIVEIGD----IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERAS  239 (241)
T ss_pred             HhhCcChhhhcccCCccccceEEEEEECC----eeccCCCCcccCCccceEEEEEEEEEEecCceEEEEEEeccccc
Confidence            4443431     11    23699999999    99999999999999999999999999999999999999999874

>KOG0188|consensus

Probab=100.00  E-value=4.9e-33  Score=238.22  Aligned_cols=151  Identities=34%  Similarity=0.496  Sum_probs=137.5

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH---------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV---------   71 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~---------   71 (158)
                      ||+.+|++|||+|||++||+++++...++|+.+.|+.+++||...+. ++.+++..+|+.+|++|.++.++         
T Consensus       563 rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~-lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~  641 (895)
T KOG0188|consen  563 RRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGA-LTKEQLKKVEDKINEFIQKNAPVYAKELPLAE  641 (895)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCC-CCHHHHHHHHHHHHHHHhcCCceEEEecCHHH
Confidence            79999999999999999999999668899999999999999998777 99999999999999999999964         


Q ss_pred             ----hHHHHhhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340          72 ----DRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG  147 (158)
Q Consensus        72 ----~~~~~~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~  147 (158)
                          ++++.+|+|.||++||||.+|. ...++++.|||||+.||++||.|.|++.++..+|.+||..++|+.|.++...+
T Consensus       642 ak~i~glr~v~~E~YPdpVRVVsvg~-~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a  720 (895)
T KOG0188|consen  642 AKKIPGLRAVFDEVYPDPVRVVSVGA-GQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLA  720 (895)
T ss_pred             HhcCCCcccccCCccCCceEEEEecc-ccccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHH
Confidence                2456788999999999999985 34567999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q psy6340         148 KQLSAA  153 (158)
Q Consensus       148 ~~~~~~  153 (158)
                      ..+.+.
T Consensus       721 ~~~~~~  726 (895)
T KOG0188|consen  721 EDLDKD  726 (895)
T ss_pred             HHHHhh
Confidence            854333

>PRK01584 alanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.4e-32  Score=234.56  Aligned_cols=131  Identities=31%  Similarity=0.429  Sum_probs=118.9

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      +|+.+|++|||+|||++||+++|| ...+.|+++.++++|+||..+++ ++++++.+||+.||++|+++.|+.       
T Consensus       449 ~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~-it~edL~~IE~~vNeiI~~n~pV~~~~~s~e  527 (594)
T PRK01584        449 HSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK-MTDDEIKKVEDIVNLQIKNDLSVKKEVMSLE  527 (594)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence            367899999999999999999999 67889999999999999998776 999999999999999999999763       


Q ss_pred             HHHH-----hhcccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEe
Q psy6340          73 RRHM-----RASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT  136 (158)
Q Consensus        73 ~~~~-----~~~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~  136 (158)
                      +|..     ++++.|++.+|||+||+    ++.++||||||.||++||.|+|++.+++++|++||+++.
T Consensus       528 EA~~~~~~~lf~e~y~~~VRVV~Igd----~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~  592 (594)
T PRK01584        528 EAREKGAMALFGEKYEDIVKVYEIDG----FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL  592 (594)
T ss_pred             HHHhcchhhhccccCCCcEEEEEECC----eeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence            3332     45567888899999999    999999999999999999999999999999999999985

>PLN02961 alanine-tRNA ligase

Probab=99.97  E-value=1.2e-30  Score=202.07  Aligned_cols=126  Identities=23%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHH-hC-CeeecceeeeCCceEEEEecCCCCCCHHH----HHHHHHHHHHHHHccCcHh--
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRV-LT-CTYQKSCRVFSDECALDFSVYGETLSVDS----VAAVEKYINDVIADQVQVD--   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~-~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~----l~~iE~~~n~~I~~~~~~~--   72 (158)
                      ||+.+|++|||+|||++||+++ +| ...++|+++ +++.++||...   ++.++    +.+||+.+|++|++++|+.  
T Consensus        78 rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~~~---i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~  153 (223)
T PLN02961         78 RRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYKGK---IPQGELDSKQDELEAEANELIAEGGKVSAA  153 (223)
T ss_pred             HHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeeccc---CCHHHHHhHHHHHHHHHHHHHHcCCceeEE
Confidence            7999999999999999999997 66 445667765 67888998642   55544    5799999999999999864  


Q ss_pred             -----HHHHhhcccC------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEE
Q psy6340          73 -----RRHMRASEIY------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL  135 (158)
Q Consensus        73 -----~~~~~~~~~~------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~  135 (158)
                           ++....+...      .+.+|+|+|++    +|.+|||||||.||+|||.|+|++++ +++|.+||+|.
T Consensus       154 ~~~~~ea~~~~~~~~~~~~~~~~~vRiV~I~~----~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~  222 (223)
T PLN02961        154 VLPYDEAAELCGGSLPDYIAKDSTPRIVKIGD----SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT  222 (223)
T ss_pred             EeCHHHHHHhcCCcCCCcCCCCCceEEEEECC----CccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence                 3333321111      24699999999    99999999999999999999999986 56888899985

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.92  E-value=3e-24  Score=186.04  Aligned_cols=144  Identities=17%  Similarity=0.238  Sum_probs=117.6

Q ss_pred             HHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHHh
Q psy6340           5 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHMR   77 (158)
Q Consensus         5 ~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~~   77 (158)
                      .+.+|||+|||++|++++||.....+++..++++|+||+.+++ ++++++.+||+.||++|+++.|+.       +|..+
T Consensus         7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~-it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~   85 (575)
T PRK12305          7 EVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP-FTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE   85 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence            4679999999999999999844444555568999999998766 999999999999999999999763       45444


Q ss_pred             hcc----------cCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEEEeCHHH
Q psy6340          78 ASE----------IYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLTGESS  140 (158)
Q Consensus        78 ~~~----------~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~~~g~~a  140 (158)
                      +.+          ..++.+|+|+||+    + .++|+||||+||++||.|+|+++++       .+++++||++++.|..
T Consensus        86 f~~~~~k~~l~~~~~~~~vri~~ig~----~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~~  160 (575)
T PRK12305         86 FANEPYKLELIDDIPEEGITIYDNGD----F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWETK  160 (575)
T ss_pred             CCcChhHHHhhhhcCCCeEEEEEECC----E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCCH
Confidence            431          1123599999999    6 6899999999999999999999955       3789999999999874


Q ss_pred             HHHHHHHHHHHHHhh
Q psy6340         141 KAAVENGKQLSAAVK  155 (158)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (158)
                       +.+.+..+.+++++
T Consensus       161 -~~l~~~~~~~~e~~  174 (575)
T PRK12305        161 -EELKEYLKRLEEAK  174 (575)
T ss_pred             -HHHHHHHHHHHHhh
Confidence             67777777777765

>KOG2105|consensus

Probab=99.91  E-value=3.3e-24  Score=168.50  Aligned_cols=148  Identities=21%  Similarity=0.377  Sum_probs=120.6

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHH------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRR------   74 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~------   74 (158)
                      ||+++|+.||++|||++++.+.|. +.+.++.++.-...++.+.+ + ++.+++..||+.+|+.|..-+|+.-.      
T Consensus       104 kR~D~MQQHsGQHLitAvad~~fK-lkTtSWelG~~~sa~e~~~~-~-mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d  180 (415)
T KOG2105|consen  104 KRMDYMQQHSGQHLITAVADHLFK-LKTTSWELGRFRSAIELDTP-S-MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD  180 (415)
T ss_pred             HHhHHHHHhcchhHHHHHHHhhhc-cceeeeeccceeeccccCCC-C-ccHHHHHHHHHHHHHHHHhccchheeecccCC
Confidence            699999999999999999999997 66666666543344555553 4 89999999999999999999886411      


Q ss_pred             ---HHhhcccCC----CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHH
Q psy6340          75 ---HMRASEIYP----DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENG  147 (158)
Q Consensus        75 ---~~~~~~~~~----~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~  147 (158)
                         ..+.+...|    +++|+|.|+|    +|.++||||||+||++|+.|+|++.++-.++.+-+.|.+|.+........
T Consensus       181 ~eVeqVS~~~~~D~haG~iRvvnI~~----vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mers  256 (415)
T KOG2105|consen  181 PEVEQVSGRGLPDDHAGPIRVVNIEG----VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERS  256 (415)
T ss_pred             cchhhccCCCCcccccCceEEEeecC----ccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHh
Confidence               111111123    3699999999    99999999999999999999999999988887778888899999999999


Q ss_pred             HHHHHHhh
Q psy6340         148 KQLSAAVK  155 (158)
Q Consensus       148 ~~~~~~~~  155 (158)
                      +.++.++.
T Consensus       257 h~t~~a~t  264 (415)
T KOG2105|consen  257 HGTEKALT  264 (415)
T ss_pred             cchHHHHH
Confidence            88887774

>PLN02837 threonine-tRNA ligase

Probab=99.91  E-value=1.3e-23  Score=183.07  Aligned_cols=146  Identities=17%  Similarity=0.246  Sum_probs=119.4

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHhCC-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340           2 RLGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R   73 (158)
Q Consensus         2 R~~~~~~HTa~HlL~~al~~~~~~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~   73 (158)
                      |...+.+|||+|||++|++++||. ....|.. .++++|+||+. ++ ++++++.+||+.||++|.+|.|+.       +
T Consensus        41 ~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~-~~~g~y~D~~~-~~-lt~edl~~IEk~m~~iI~~n~pI~~~~v~~eE  117 (614)
T PLN02837         41 EKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPW-IENGFYYDFDM-EP-LTDKDLKRIKKEMDRIISRNLPLVREEVSREE  117 (614)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cCCCEEEEecC-CC-CCHHHHHHHHHHHHHHHHcCCCEEEEEecHHH
Confidence            678899999999999999999983 3344555 46899999997 45 999999999999999999999763       4


Q ss_pred             HHHhhc---ccC---------CCcEEEEEeCCCCceeeeecCCCccccccccc--ccEEEEeEeec-------CCCeEEE
Q psy6340          74 RHMRAS---EIY---------PDDVILIDISDKENVISREPCCGTHVFNTGHI--ESCTVIGYKSY-------NHGVRSI  132 (158)
Q Consensus        74 ~~~~~~---~~~---------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI--~~~~I~~~~~~-------~~~~~Ri  132 (158)
                      |...+.   +.|         .+.+|+|+|||    ...++|+||||+||++|  +.|+|+++++.       ++.++||
T Consensus       118 A~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~----~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~~~~l~ri  193 (614)
T PLN02837        118 AQKRIMAINEPYKLEILEGIKEEPITIYHIGE----EWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEKNQMLQRI  193 (614)
T ss_pred             HHHHHHHcCCchhHHHhccCCCCeEEEEEECC----eEEEecCCCCcccccccccceEEEEEeehhhhcccccCcceEEE
Confidence            444432   111         13589999997    55899999999999999  99999999883       6789999


Q ss_pred             EEEeCHHHHHHHHHHHHHHHHhh
Q psy6340         133 KCLTGESSKAAVENGKQLSAAVK  155 (158)
Q Consensus       133 ~~~~g~~a~~~~~~~~~~~~~~~  155 (158)
                      |++++|. ++.+.+....++|..
T Consensus       194 ~g~~~~~-~~~l~~~~~~~~e~~  215 (614)
T PLN02837        194 YGTAWES-EEQLKAYLHFKEEAK  215 (614)
T ss_pred             EEEecCC-HHHHHHHHHHHHHhh
Confidence            9999988 577888877777764

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.89  E-value=5.7e-22  Score=173.57  Aligned_cols=145  Identities=17%  Similarity=0.246  Sum_probs=117.5

Q ss_pred             hHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340           4 GCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM   76 (158)
Q Consensus         4 ~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~   76 (158)
                      ..+.+|||+|||++|++++||.....+.+..++++|+||+.+.+ ++++++.+||+.||++|+++.|+       ++|..
T Consensus        68 ~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~-lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~  146 (638)
T PRK00413         68 LEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP-FTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIE  146 (638)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence            35678999999999999999844444455558999999997666 99999999999999999999975       34555


Q ss_pred             hhcc---c--------CC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEe
Q psy6340          77 RASE---I--------YP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT  136 (158)
Q Consensus        77 ~~~~---~--------~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~  136 (158)
                      +|.+   .        .|  +.++++++++    + .++|+||||+||++|+.|+|.+.++.       +++++||++++
T Consensus       147 ~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~----~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~  221 (638)
T PRK00413        147 LFKDRGEPYKVELIEEIPEDEEISLYRQGE----F-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTA  221 (638)
T ss_pred             HHHhcCCccHHHHhhcCCCCCeEEEEEECC----E-EEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeee
Confidence            5432   1        12  2589999999    6 79999999999999999999998553       78899999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy6340         137 GESSKAAVENGKQLSAAVK  155 (158)
Q Consensus       137 g~~a~~~~~~~~~~~~~~~  155 (158)
                      .+.. +.+....+.++++.
T Consensus       222 ~~~~-~~l~~~~~~~~e~~  239 (638)
T PRK00413        222 FADK-KELDAYLHRLEEAK  239 (638)
T ss_pred             cCCH-HHHHHHHHHHHHhc
Confidence            9885 66777777777664

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.88  E-value=1.3e-21  Score=171.59  Aligned_cols=143  Identities=15%  Similarity=0.276  Sum_probs=116.7

Q ss_pred             HHHHhHHHHHHHHHHHHHhCCe-eecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340           5 CMRAHTTSHLLNAALRRVLTCT-YQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM   76 (158)
Q Consensus         5 ~~~~HTa~HlL~~al~~~~~~~-~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~   76 (158)
                      ..-+||++|||.+|++++||.. ...|..+ ++++|+||+...+ ++++++.+||+.||++|.+++|+       ++|..
T Consensus        73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~-~~g~y~d~~~~~~-it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~  150 (639)
T PRK12444         73 EIARHSAAHILAQAVKRLYGDVNLGVGPVI-ENGFYYDMDLPSS-VNVEDLRKIEKEMKKIINENIKIERVEVSREEAAK  150 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEeCCcC-CCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence            3568999999999999999843 3334444 8999999998766 99999999999999999999975       35555


Q ss_pred             hhcc---c-------C-C--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEe
Q psy6340          77 RASE---I-------Y-P--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT  136 (158)
Q Consensus        77 ~~~~---~-------~-~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~  136 (158)
                      +|.+   .       + |  ..++++++++    + ++.|+||||+|||+|+.|+|++.++.       +++++||++++
T Consensus       151 ~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~----~-~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a  225 (639)
T PRK12444        151 LFQEMNDRLKLELLEAIPSGESITLYKQGE----F-VDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA  225 (639)
T ss_pred             HHhhcCCchHHHHHhcCCCCCeEEEEEECC----E-EEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe
Confidence            5542   1       1 2  2489999999    6 78899999999999999999998875       78899999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy6340         137 GESSKAAVENGKQLSAAVK  155 (158)
Q Consensus       137 g~~a~~~~~~~~~~~~~~~  155 (158)
                      .|. .+.+......++|..
T Consensus       226 ~~~-~~~l~~~~~~~~~~~  243 (639)
T PRK12444        226 FSS-QKELEEYLHFVEEAA  243 (639)
T ss_pred             cCC-HHHHHHHHHHHHHhc
Confidence            987 577777777777764

>PLN02908 threonyl-tRNA synthetase

Probab=99.85  E-value=1.8e-20  Score=165.31  Aligned_cols=145  Identities=14%  Similarity=0.166  Sum_probs=117.3

Q ss_pred             HHHHhHHHHHHHHHHHHHhCCeeecceeeeC-CceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHH
Q psy6340           5 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFS-DECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHM   76 (158)
Q Consensus         5 ~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~-~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~   76 (158)
                      -+.+||++|||.+|++++||.....|.++.+ ++||+||...+..++++++..||+.|+++|++++|+       ++|..
T Consensus       120 ~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e  199 (686)
T PLN02908        120 DTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALE  199 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHH
Confidence            4679999999999999999833455777754 789999985432399999999999999999999975       35655


Q ss_pred             hhcc---------cCC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCH
Q psy6340          77 RASE---------IYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGE  138 (158)
Q Consensus        77 ~~~~---------~~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~  138 (158)
                      +|.+         ..|  +.++++++|+    + ++.|.||||+|||.|+.|+|++.++.       +.++||||++++|
T Consensus       200 ~F~~~~~K~~ll~~~~~~~~v~vY~~g~----~-~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp  274 (686)
T PLN02908        200 MFSENKFKVEIINDLPEDATITVYRCGP----L-VDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFP  274 (686)
T ss_pred             HHhhCCcHHHHHhhCCCCCeeEEEEECC----E-EEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccC
Confidence            5531         123  2489999999    6 88999999999999999999998853       5678999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy6340         139 SSKAAVENGKQLSAAVK  155 (158)
Q Consensus       139 ~a~~~~~~~~~~~~~~~  155 (158)
                      .. +.+.+..++++|..
T Consensus       275 ~~-~~l~~~~~~~~e~~  290 (686)
T PLN02908        275 DK-KLLKEYKHRIEEAK  290 (686)
T ss_pred             Ch-HHHHHHHhhhhhcc
Confidence            95 66778888877764

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.82  E-value=2.1e-19  Score=155.49  Aligned_cols=141  Identities=17%  Similarity=0.169  Sum_probs=114.9

Q ss_pred             HhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHHhhc
Q psy6340           8 AHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHMRAS   79 (158)
Q Consensus         8 ~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~~~~   79 (158)
                      +|||+|||.+|++++|+ .....|+.+ ++++|+||+...+ ++++++.+||+.||++|.++.|+.       +|...+.
T Consensus         1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~-~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~   78 (563)
T TIGR00418         1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRS-FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK   78 (563)
T ss_pred             CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh
Confidence            69999999999999998 445666666 7789999997666 999999999999999999999853       3433332


Q ss_pred             --ccC----------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCHHH
Q psy6340          80 --EIY----------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGESS  140 (158)
Q Consensus        80 --~~~----------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~~a  140 (158)
                        +.|          .+.++++.+++    +..+.|.||||+||+.|+.|+|.+....       ++.++||++++.|..
T Consensus        79 ~~~~~k~~Ll~~~~~~~~v~vy~~g~----~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~  154 (563)
T TIGR00418        79 VLEPYKLELLDEIPNGVKRTPYGWGK----AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADK  154 (563)
T ss_pred             ccChhHHHHHhcCCCCCeEEEEEeCC----EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCH
Confidence              222          24689999999    7899999999999999999999987763       568899999998884


Q ss_pred             HHHHHHHHHHHHHhh
Q psy6340         141 KAAVENGKQLSAAVK  155 (158)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (158)
                       +.+.+....++|..
T Consensus       155 -~~l~~~~~~~~~~~  168 (563)
T TIGR00418       155 -KQLAAYLLRLEEAK  168 (563)
T ss_pred             -HHHHHHHHhhhhhh
Confidence             77777777776653

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.1e-17  Score=144.17  Aligned_cols=138  Identities=16%  Similarity=0.242  Sum_probs=113.8

Q ss_pred             HHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHHHhh
Q psy6340           6 MRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRHMRA   78 (158)
Q Consensus         6 ~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~~~~   78 (158)
                      --+||++|+|..|++++|+. ...|+. -+++||+||+...+ ++++|+..||+.|++++.+++++       +.+...|
T Consensus        28 ~~rhs~ah~l~~av~~l~p~-~~~gp~-ie~gfyyd~~~~~~-~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f  104 (589)
T COG0441          28 IIRHSCAHVLAQAVKRLYPD-VTIGPV-IEEGFYYDFDVKEP-ITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPF  104 (589)
T ss_pred             hhhhHHHHHHHHHHHHhCCC-ccccCc-ccceeEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHh
Confidence            35899999999999999986 555644 48999999999877 99999999999999999999964       3455555


Q ss_pred             cccC--------CCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCHHHHHH
Q psy6340          79 SEIY--------PDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGESSKAA  143 (158)
Q Consensus        79 ~~~~--------~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~~a~~~  143 (158)
                      + .|        +.++.+++-++    | .++|-|+||++|+.| .|+++++++.       +++++|||+++. .....
T Consensus       105 ~-~yK~~~i~~~~~~~s~y~~~~----~-~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~-~~~~~  176 (589)
T COG0441         105 G-PYKAELIDCKGHPLSEYSQGE----F-VDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF-ADKKE  176 (589)
T ss_pred             h-hhHHHHHhcCCCCceeEecCc----c-ccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc-CCHHH
Confidence            4 22        34577777777    6 899999999999999 9999998864       788999999999 55777


Q ss_pred             HHHHHHHHHHh
Q psy6340         144 VENGKQLSAAV  154 (158)
Q Consensus       144 ~~~~~~~~~~~  154 (158)
                      +....+.++|.
T Consensus       177 l~~~l~~~eea  187 (589)
T COG0441         177 LEAYLKRLEEA  187 (589)
T ss_pred             HHHHHhhhhhc
Confidence            77777766554

>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer

Probab=99.73  E-value=5e-18  Score=99.49  Aligned_cols=44  Identities=36%  Similarity=0.548  Sum_probs=38.6

Q ss_pred             EEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEE
Q psy6340          86 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK  133 (158)
Q Consensus        86 ~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~  133 (158)
                      +|+|+||+    ++.+|||||||+||++|+.|+|++.++.++|++|||
T Consensus         1 vRvv~i~~----~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~   44 (44)
T PF07973_consen    1 VRVVRIGD----FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY   44 (44)
T ss_dssp             EEEEEETT----TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred             CEEEEECC----eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence            69999999    999999999999999999999999999999999997

Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....

>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain

Probab=99.61  E-value=9.1e-16  Score=89.78  Aligned_cols=44  Identities=34%  Similarity=0.533  Sum_probs=41.3

Q ss_pred             EEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEE
Q psy6340          86 VILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK  133 (158)
Q Consensus        86 ~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~  133 (158)
                      +|+|.|++    +|.+||+||||.||++||.|+|++.++.+.+++||+
T Consensus         1 vriv~i~~----~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~   44 (44)
T smart00863        1 VRVVSIGD----FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY   44 (44)
T ss_pred             CEEEEECC----EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence            58999999    999999999999999999999999999888888985

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=98.85  E-value=1.6e-08  Score=87.54  Aligned_cols=109  Identities=7%  Similarity=0.035  Sum_probs=77.0

Q ss_pred             CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhhcccCCCcEEEEEeCCCCceeeeecCC
Q psy6340          25 CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCC  104 (158)
Q Consensus        25 ~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~~~~~~~~~riv~i~~~~~~~~~~~Cg  104 (158)
                      ++.......++-.||+|...+.. +|.++..+       +...|.=..       ....+. +++.+|.    + +++|.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~-------~~~~~~-~~~~~~~----~-~~~~~   81 (545)
T PRK14799         23 GYKPVAVGLGERDFYIDVKSDTS-ITLDEVKK-------AINENVLAN-------VSIENN-QIVYKGN----K-VSIIE   81 (545)
T ss_pred             CCCceEecccceeEEEecCCCcc-ccHHHHHH-------HHhcCccee-------eEeecC-cEEEccC----c-eeecC
Confidence            34444555678889999998765 77664433       222221000       001121 2334777    5 99999


Q ss_pred             C-cccccccccccEEEEeEeec----CCCeEEEEEEeCHHHHHHHHHHHHHHHHhh
Q psy6340         105 G-THVFNTGHIESCTVIGYKSY----NHGVRSIKCLTGESSKAAVENGKQLSAAVK  155 (158)
Q Consensus       105 G-tHV~~T~eI~~~~I~~~~~~----~~~~~Ri~~~~g~~a~~~~~~~~~~~~~~~  155 (158)
                      | |||+||+.|+.|+++++++.    ++++||||+++++. ++.+.+....++|..
T Consensus        82 ~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~-~~~l~~~~~~~eea~  136 (545)
T PRK14799         82 DKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET-EEQLKDYLTWLEKAE  136 (545)
T ss_pred             CCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC-HHHHHHHHHHHHhcc
Confidence            9 99999999999999999985    57899999999988 577888888888765

>KOG1637|consensus

Probab=97.96  E-value=3.3e-06  Score=71.06  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             HHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhhcccCCCcE
Q psy6340           7 RAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASEIYPDDV   86 (158)
Q Consensus         7 ~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~~~~~~~~~   86 (158)
                      .|||++|+|..|+++.+|.-...|+.+ +++||+|+ . +. ++.+++..||.                           
T Consensus        69 fwhssahvlg~a~e~~~g~~lc~Gpp~-~~gf~yd~-~-~~-i~~~d~~~~e~---------------------------  117 (560)
T KOG1637|consen   69 FWHSSAHVLGEALEQEYGAHLCIGPPI-EEGFYYDM-L-DE-ISSNDFPSIEA---------------------------  117 (560)
T ss_pred             eeehhhhHhhHHHHHhcCeeEeeCCCC-cCceehhh-h-cc-ccccccccccc---------------------------
Confidence            589999999999999999333346765 78999998 4 33 43332222211                           


Q ss_pred             EEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHHHHHHHHHHHHHh
Q psy6340          87 ILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAV  154 (158)
Q Consensus        87 riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~~~~~~~~~~~~~  154 (158)
                                         +||++|+.|+.|+|++.++.     =..+.++|.- ..+.+..+++.|.
T Consensus       118 -------------------phi~~tg~ika~k~~~nss~-----yw~~~sfp~~-k~~k~~~~~~~Ea  160 (560)
T KOG1637|consen  118 -------------------PHIRHTGKIKAFKILKNSSA-----YWEGDSFPDP-KQLKEWEKFQEEA  160 (560)
T ss_pred             -------------------ccccccceeeeeeeeccchh-----hhccccCCCH-HHHHHHHhhchhh
Confidence                               99999999999999987764     0111156553 4455555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	1e-20
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	2e-18
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	3e-16
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	2e-15
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	2e-13

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241

 Score = 83.8 bits (208), Expect = 1e-20
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYI 61
           R   M+ H   HLL+     +          +  +   +D   +   L   ++   EK  
Sbjct: 91  RFDGMQQHLGQHLLSGCFYDLFG-ANTCGFHLGKEISTVDIVGF---LDEKTIREAEKEA 146

Query: 62  NDVIADQVQVDRRHM-----------RASEIYPDDVILIDISDKENVISREPCCGTHVFN 110
           N +I + ++V                RA     +++ +++I      +    CCG H  N
Sbjct: 147 NRLIFENLEVKSYAPSKKELKKVKTRRALPKTDEEIRIVEIVG----LDLNACCGVHPRN 202

Query: 111 TGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVE 145
           T  ++   +  ++ + +  R I+ + G     AV 
Sbjct: 203 TRDLQVIKIRRWEKHKNATR-IEYVAGN---RAVS 233

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R   MR H+ +H+L  +L++VL    +Q   R    +  LD + +    S + +  +E  
Sbjct: 593 RWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHF-RRPSEEEIKEIEML 651

Query: 61  INDVIADQVQVDRRHM--------------RASEIYPDDVILIDISDKENVISREPCCGT 106
            N  I     +    M              +        + ++ + D       + C GT
Sbjct: 652 ANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-----DVQACGGT 706

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGES 139
           H  +TG I    ++  +S   GV   +   GE+
Sbjct: 707 HCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752

 Score = 74.0 bits (180), Expect = 3e-16
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKY 60
           R+  MR HT +H+L  AL RVL    +Q   ++ +D   LD S Y   +S + +  +E  
Sbjct: 606 RIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYX-RISEEELXEIEML 664

Query: 61  INDVIADQVQVDRRHM--------------RASEIYPDDVILIDISDKENVISREPCCGT 106
            N ++ +   V    +              +   +   ++ ++ I D       + C GT
Sbjct: 665 ANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIED----WDVQACGGT 720

Query: 107 HVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE 138
           H+ +TG +    ++  +    GV  I    GE
Sbjct: 721 HLPSTGLVGPIXILRTERIQDGVERIIFACGE 752

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 15/128 (11%)

Query: 1   MRLGCMRAHTTSHLLNAALRRVLT--CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVE 58
           M    +R H+  H++  A+ +VL     +  S  V  ++  L         S + +  +E
Sbjct: 1   MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFD-RKPSDEEIREIE 59

Query: 59  KYINDVIADQVQVDRRHM-------RASEIYPDDVILIDISDKENVI-----SREPCCGT 106
           +  N+ + +   +    +          E   D   + +      V+     +   C   
Sbjct: 60  RLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKE 119

Query: 107 HVFNTGHI 114
           H   TG I
Sbjct: 120 HTKTTGEI 127

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 15/133 (11%)

Query: 2   RLGCMRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 59
           R   MR HT  HLL   L  VL           +  ++   D +   E L+      +  
Sbjct: 92  RYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYP-ENLN-KYKEQIIS 149

Query: 60  YINDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTV 119
             N  + +  +V          +  D     I D        PC GTHV +   I     
Sbjct: 150 LFNKYVDEGGEV-------KIWWEGDRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKK 198

Query: 120 IGYKSYNHGVRSI 132
           +   S   G + +
Sbjct: 199 LKRSSIGRGKQRL 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	100.0
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	100.0
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	100.0
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	99.98
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	99.97
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.97
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.94
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.94

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}

Probab=100.00  E-value=4.5e-37  Score=239.41  Aligned_cols=133  Identities=17%  Similarity=0.324  Sum_probs=115.9

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R   73 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~   73 (158)
                      ||+++|++|||+|||++||+++||. .+.|+++.++++|+||+  .+ ++++++.+||+.||++|++++|+.       +
T Consensus        90 rR~~~~~~HTa~HLL~~al~~~~g~-~~~G~~v~~~~~r~Df~--~~-lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~e  165 (241)
T 3kew_A           90 RRFDGMQQHLGQHLLSGCFYDLFGA-NTCGFHLGKEISTVDIV--GF-LDEKTIREAEKEANRLIFENLEVKSYAPSKKE  165 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECSSCEEEEEE--SC-CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHCCC-CeEeccccCCeEEEEEC--CC-CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHH
Confidence            6999999999999999999999993 36899999999999999  45 999999999999999999999864       2


Q ss_pred             HHHhh----cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCHHHHH
Q psy6340          74 RHMRA----SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKA  142 (158)
Q Consensus        74 ~~~~~----~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~~a~~  142 (158)
                      |..++    .+.|++.+|+|+||+    +|.+|||||||+||++||.|+|++.++.+.+ .||++++|++|++
T Consensus       166 A~~~~~~~~~e~~~~~VRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~~-~RI~~~~G~~a~~  233 (241)
T 3kew_A          166 LKKVKTRRALPKTDEEIRIVEIVG----LDLNACCGVHPRNTRDLQVIKIRRWEKHKNA-TRIEYVAGNRAVS  233 (241)
T ss_dssp             TTTCCCSSCCCCCSSCCCEEEETT----TEEEECCSCCCSBSGGGCCEEEEEEEEETTE-EEEEEEEGGGGC-
T ss_pred             HHhcChhhcCCccCCcEEEEEECC----eEEEcCCCCCcCCHhhcCCEEEEEEeccCCc-EEEEEEECHHHHh
Confidence            32222    233667899999999    9999999999999999999999999987655 6999999999864

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2

Probab=100.00  E-value=8.1e-35  Score=223.40  Aligned_cols=123  Identities=22%  Similarity=0.209  Sum_probs=111.1

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhCC--eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhh
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLTC--TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRA   78 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~~--~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~   78 (158)
                      ||+++|++|||+|||++||+++||.  +...|+++.|+++|+||+.+++ ++++ +++||+.||++|++++|+..     
T Consensus        91 rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~-lt~e-l~~IE~~vn~~I~~~~pv~~-----  163 (216)
T 2e1b_A           91 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKY-KEQIISLFNKYVDEGGEVKI-----  163 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GGGG-HHHHHHHHHHHHHHCCBEEE-----
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC-CCHH-HHHHHHHHHHHHhcCCCEEE-----
Confidence            6999999999999999999999995  5778999999999999998766 8775 99999999999999999752     


Q ss_pred             cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEe
Q psy6340          79 SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLT  136 (158)
Q Consensus        79 ~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~  136 (158)
                       ...+ .+|+|+||+    ++.+|||||||+||++||.|+|++.+++++|++||+|..
T Consensus       164 -~~~~-~vRvv~ig~----~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~l  215 (216)
T 2e1b_A          164 -WWEG-DRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMWL  215 (216)
T ss_dssp             -EESS-SCEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEEE
T ss_pred             -EEcC-CEEEEEECC----EEEECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEEE
Confidence             1122 299999999    999999999999999999999999999999999999974

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*

Probab=100.00  E-value=4.3e-34  Score=249.74  Aligned_cols=133  Identities=26%  Similarity=0.401  Sum_probs=120.9

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++||+++|| .+++.|+++.++++|+||+.+.+ ++++++++||+.||++|++++|+.       
T Consensus       605 rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~-lt~edL~~IE~~vNeiI~~nlpV~~~~~s~e  683 (752)
T 2zze_A          605 RRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR-ISEEELXEIEMLANRIVMEDRXVTWEWLPRT  683 (752)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBEEEEEEEHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCccceeecCHH
Confidence            699999999999999999999999 78899999999999999998777 999999999999999999999853       


Q ss_pred             HHHHh-----h--cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCH
Q psy6340          73 RRHMR-----A--SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE  138 (158)
Q Consensus        73 ~~~~~-----~--~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~  138 (158)
                      +|...     +  ++.|.+.+|+|+||+    +++++||||||+||++||.|+|++++++++|++||++++|.
T Consensus       684 EA~~~~~~~lf~~ge~ygd~VRVV~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~  752 (752)
T 2zze_A          684 TAEQXYGFRLYQGGVVPGREIRVVXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE  752 (752)
T ss_dssp             HHHHHHCGGGCSSCCCCSSEEEEEEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred             HHhhcchhhhhcCCCCCCCeEEEEEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence            34332     2  345667899999999    99999999999999999999999999999999999999984

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}

Probab=99.98  E-value=6.4e-32  Score=235.93  Aligned_cols=132  Identities=23%  Similarity=0.350  Sum_probs=118.7

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------   72 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------   72 (158)
                      ||+.+|++|||+|||++|++++|| .+++.|+.+.++++|+||..+.+ ++++++.+||+.||++|++++|+.       
T Consensus       592 rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~-lT~edL~~IE~~vNeiI~~nlpV~~~~~s~e  670 (739)
T 2ztg_A          592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRR-PSEEEIKEIEMLANREILANKPIKWEWMDRI  670 (739)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSC-CCHHHHHHHHHHHHHHHHTTCBEEEEEEEHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence            699999999999999999999999 78899999999999999998766 999999999999999999999853       


Q ss_pred             HHHHhh-------cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEEeCH
Q psy6340          73 RRHMRA-------SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE  138 (158)
Q Consensus        73 ~~~~~~-------~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~~g~  138 (158)
                      +|...+       +..+.+.+|||+||+     +.++||||||+||++||.|+|++.+++++|++||++++|+
T Consensus       671 EA~~~~~l~L~~~~~~~~d~VRVV~IGd-----~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~  738 (739)
T 2ztg_A          671 EAERKFGFRLYQGGVPPGRKIRVVQVGD-----DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGE  738 (739)
T ss_dssp             HHHHHHCGGGGTTCCCCSSEEEEEEETT-----EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESC
T ss_pred             HHHHhCCHhhhcCCCCCCCeEEEEEECC-----eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEecC
Confidence            343322       233456799999999     6999999999999999999999999999999999999995

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A

Probab=99.97  E-value=2.1e-30  Score=189.53  Aligned_cols=130  Identities=18%  Similarity=0.205  Sum_probs=107.9

Q ss_pred             hHHHHhHHHHHHHHHHHHHhC-Cee-ecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HH
Q psy6340           4 GCMRAHTTSHLLNAALRRVLT-CTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RR   74 (158)
Q Consensus         4 ~~~~~HTa~HlL~~al~~~~~-~~~-~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~   74 (158)
                      .+|++|||+|||++|++++|| ... ..|..+.++++++||+.+.. ++++++.+||+.||++|++++|+.       +|
T Consensus         4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA   82 (157)
T 1v4p_A            4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREEA   82 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence            579999999999999999998 454 44557776689999987666 999999999999999999999863       56


Q ss_pred             HHhhccc------CC---CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-cCCCeEEEEEEeCH
Q psy6340          75 HMRASEI------YP---DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-YNHGVRSIKCLTGE  138 (158)
Q Consensus        75 ~~~~~~~------~~---~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-~~~~~~Ri~~~~g~  138 (158)
                      ..++++.      +|   +.+|+|+||+    +|.++||||||+||++||.|+|++.++ .+++..||+|.++|
T Consensus        83 ~~~f~~~~~~~~~~~~~~~~vrv~~ig~----~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~  152 (157)
T 1v4p_A           83 EKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE  152 (157)
T ss_dssp             HHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred             HHhhCccccccccCCCCCCeEEEEEECC----eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence            5555431      24   3599999999    999999999999999999999999886 34455699999886

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=99.97  E-value=3.5e-30  Score=198.43  Aligned_cols=128  Identities=19%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             hHHHHhHHHHHHHHHHHHHhCCee-ecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHHH
Q psy6340           4 GCMRAHTTSHLLNAALRRVLTCTY-QKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRRH   75 (158)
Q Consensus         4 ~~~~~HTa~HlL~~al~~~~~~~~-~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~~   75 (158)
                      ..|.+|||+|||++|++++||... ..|.+ .+++||+||+.+.+ ++++++.+||+.||++|++++|+       ++|.
T Consensus        68 ~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~-~~~g~y~d~~~~~~-~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~  145 (224)
T 1tke_A           68 LEIIRHSCAHLLGHAIKQLWPHTKMAIGPV-IDNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEAR  145 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCEECCCCE-ETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcEEEECCc-cCCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHH
Confidence            579999999999999999997433 34554 48999999998766 99999999999999999999975       3444


Q ss_pred             Hhhc------------c-c-CCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEE
Q psy6340          76 MRAS------------E-I-YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKC  134 (158)
Q Consensus        76 ~~~~------------~-~-~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~  134 (158)
                      .++.            + . +.+.+|+|++|+    + .++|+||||+||++||.|+|++.++       .++++||||+
T Consensus       146 ~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~----~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg  220 (224)
T 1tke_A          146 ETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG  220 (224)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT----E-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred             HHHHHcCCchHHHHhccccCCCCeeEEEEeCC----E-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEE
Confidence            4332            1 2 334699999999    7 7999999999999999999999987       3888999999


Q ss_pred             EeCH
Q psy6340         135 LTGE  138 (158)
Q Consensus       135 ~~g~  138 (158)
                      ++++
T Consensus       221 ~a~~  224 (224)
T 1tke_A          221 TAWA  224 (224)
T ss_dssp             EECC
T ss_pred             eccC
Confidence            9974

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.94  E-value=6e-27  Score=203.96  Aligned_cols=144  Identities=19%  Similarity=0.308  Sum_probs=120.2

Q ss_pred             hhHHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHH
Q psy6340           3 LGCMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRR   74 (158)
Q Consensus         3 ~~~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~   74 (158)
                      -.+|++|||+|||++|++++|| ...+.|+.+ +++||+||+.+.+ ++++++.+||+.||++|++++|+       ++|
T Consensus        69 g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~-~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA  146 (645)
T 1nyr_A           69 ALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQN-ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEA  146 (645)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSC-CCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHH
Confidence            3689999999999999999998 666788877 9999999997766 99999999999999999999975       356


Q ss_pred             HHhhc-ccC--------C--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEEEEe
Q psy6340          75 HMRAS-EIY--------P--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIKCLT  136 (158)
Q Consensus        75 ~~~~~-~~~--------~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~~~~  136 (158)
                      ..+|+ +.|        |  +.+|+|++|+    + .++|+||||+||++||.|+|+++++       .+++++||++++
T Consensus       147 ~~~f~~~~yk~~li~~~~~~~~vrv~~~g~----~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~  221 (645)
T 1nyr_A          147 KELFSNDEYKLELIDAIPEDENVTLYSQGD----F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTA  221 (645)
T ss_dssp             HHHCSSCHHHHHHHCCCSSSCCCEEEEETT----E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEE
T ss_pred             HHHHhhCcchHHHhhcCCCCCeeEEEEECC----E-EEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHh
Confidence            66665 222        2  3699999999    8 8999999999999999999999974       478899999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy6340         137 GESSKAAVENGKQLSAAV  154 (158)
Q Consensus       137 g~~a~~~~~~~~~~~~~~  154 (158)
                      ++.. +.+.+....++|.
T Consensus       222 ~~~~-~~l~~~~~~l~ea  238 (645)
T 1nyr_A          222 FFDK-KELKAHLQMLEER  238 (645)
T ss_dssp             ESSH-HHHHHHHHHHHHH
T ss_pred             cCCH-HHhhhhhhhhhhh
Confidence            9875 3455555555543

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.94  E-value=7.6e-26  Score=196.93  Aligned_cols=143  Identities=17%  Similarity=0.144  Sum_probs=115.2

Q ss_pred             hhHHHHhHHHHHHHHHHHHHhCC-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcH-------hHH
Q psy6340           3 LGCMRAHTTSHLLNAALRRVLTC-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQV-------DRR   74 (158)
Q Consensus         3 ~~~~~~HTa~HlL~~al~~~~~~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~-------~~~   74 (158)
                      -..|.+|||+|||++|++++||. ..+.|+.+ +++||+||+.+.+ ++++|+.+||+.||++|+++.|+       ++|
T Consensus        67 ~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i-~~gfy~Df~~~~~-~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA  144 (642)
T 1qf6_A           67 GLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVI-DNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA  144 (642)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCEECCCCEE-TTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEEECCcc-CCeeEEEEeCCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHH
Confidence            35799999999999999999973 34677877 5889999998777 99999999999999999999975       344


Q ss_pred             HHhhc---c---------cCC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEee-------cCCCeEEEE
Q psy6340          75 HMRAS---E---------IYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKS-------YNHGVRSIK  133 (158)
Q Consensus        75 ~~~~~---~---------~~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~-------~~~~~~Ri~  133 (158)
                      ..++.   +         ..|  +.+|+|++|+    + .++|+||||+||++||.|+|+++++       .+++++|+|
T Consensus       145 ~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~----~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~  219 (642)
T 1qf6_A          145 RETFANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIY  219 (642)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT----E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEE
T ss_pred             HHHhhhhCCcchhhhhhcccCCCCceEEEEECC----E-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeee
Confidence            44332   1         123  3699999999    7 7999999999999999999999988       267789999


Q ss_pred             EEeCHHHHHHHHHHHHHHHH
Q psy6340         134 CLTGESSKAAVENGKQLSAA  153 (158)
Q Consensus       134 ~~~g~~a~~~~~~~~~~~~~  153 (158)
                      +++.+.. +.+....+.+++
T Consensus       220 g~~~~~~-~~l~~~~~~~ee  238 (642)
T 1qf6_A          220 GTAWADK-KALNAYLQRLEE  238 (642)
T ss_dssp             EEECSSH-HHHHHHHHHHHH
T ss_pred             ccccCch-hHHhhhhhhhhc
Confidence            9998764 444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d2e1ba2	129	d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C	2e-14
d1v4pa_	151	d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo	1e-12
d1nyra3	179	d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR	1e-08

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 11/132 (8%)

Query: 2   RLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYI 61
           R   MR HT  HLL   L  VL     +            + +            +    
Sbjct: 5   RYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQIISLF 64

Query: 62  NDVIADQVQVDRRHMRASEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIG 121
           N  + +  +V             D     I D        PC GTHV +   I     + 
Sbjct: 65  NKYVDEGGEVKIWWEG-------DRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLK 113

Query: 122 YKSYNHGVRSIK 133
             S   G + ++
Sbjct: 114 RSSIGRGKQRLE 125

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 59.5 bits (143), Expect = 1e-12
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 6   MRAHTTSHLLNAALRRVL--TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYIND 63
           +R H+  H++  A+ +VL     +  S  V  ++  L      +    +           
Sbjct: 6   VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65

Query: 64  VIADQ------VQVDRRHMRASEIYPDDVILIDISDKENVI-----SREPCCGTHVFNTG 112
           V  +       +  +       E   D   + +      V+     +   C   H   TG
Sbjct: 66  VKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTG 125

Query: 113 HIESCTVIGYK-SYNHGVRSI 132
            I    +   +   + G+  I
Sbjct: 126 EIGPIKIRKVRFRKSKGLLEI 146

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 16/162 (9%)

Query: 9   HTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQ 68
           H+T+HL+  A++R+          V       DF +  + +S D    +EK +  ++ + 
Sbjct: 13  HSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDID-QNISSDDFEQIEKTMKQIVNEN 71

Query: 69  VQVDRRHM---RASEIY---PDDVILIDISDKENVISR-------EPCCGTHVFNTGHIE 115
           ++++R+ +    A E++      + LID   ++  ++        + C G HV +T  I+
Sbjct: 72  MKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIK 131

Query: 116 SCTVIGYKS-YNHGVRSIKCLTGESSKAAVENGKQLSAAVKQ 156
              ++     Y  G  + K L      A   + K+L A ++ 
Sbjct: 132 EFKLLSTAGAYWRGDSNNKMLQRIYGTAF-FDKKELKAHLQM 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2e1ba2	129	AlaX-M trans-editing enzyme, C-terminal domain {Py	100.0
d1v4pa_	151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	100.0
d1nyra3	179	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.97
d1tkea2	162	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.94

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.5e-38  Score=222.83  Aligned_cols=122  Identities=22%  Similarity=0.259  Sum_probs=109.4

Q ss_pred             ChhhHHHHhHHHHHHHHHHHHHhC-C-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHhHHHHhh
Q psy6340           1 MRLGCMRAHTTSHLLNAALRRVLT-C-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRA   78 (158)
Q Consensus         1 rR~~~~~~HTa~HlL~~al~~~~~-~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~~~~~~~   78 (158)
                      ||+.+||+|||+|||++|++++|| . ..+.|+++.++.+++||+.+.. ++ ++.++||+.+|++|.++.|+..     
T Consensus         4 rR~~~mr~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~~~~-l~-~~~~~ie~~~n~~I~~~~~v~~-----   76 (129)
T d2e1ba2           4 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LN-KYKEQIISLFNKYVDEGGEVKI-----   76 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GG-GGHHHHHHHHHHHHHHCCBEEE-----
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCcccccccccccceEEEEEecccc-cc-hHHHHHHHHHHHHHHhccchhh-----
Confidence            799999999999999999999998 4 4557999999999999998765 54 5568999999999999999852     


Q ss_pred             cccCCCcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeecCCCeEEEEEE
Q psy6340          79 SEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCL  135 (158)
Q Consensus        79 ~~~~~~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~~~~~~Ri~~~  135 (158)
                        .+++.+|+|+|++    +|.+|||||||+||++||.|+|++.+++++|.+||++.
T Consensus        77 --~~~~~~Riv~I~~----~d~~~CgGTHV~~T~eIg~i~I~~~~~~gkg~~RI~~~  127 (129)
T d2e1ba2          77 --WWEGDRRYTQIRD----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW  127 (129)
T ss_dssp             --EESSSCEEEEETT----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred             --hhcccceEEEecc----ccccccCCCCCcchhhCccEEEEEEEEEeCCcEEEEEE
Confidence              1346789999999    99999999999999999999999999999999999986

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.7e-35  Score=214.00  Aligned_cols=129  Identities=18%  Similarity=0.233  Sum_probs=111.6

Q ss_pred             hhHHHHhHHHHHHHHHHHHHhC-C-eeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------H
Q psy6340           3 LGCMRAHTTSHLLNAALRRVLT-C-TYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------R   73 (158)
Q Consensus         3 ~~~~~~HTa~HlL~~al~~~~~-~-~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~   73 (158)
                      -.+||+|||+|||++|++++|| . .++.|+++.++.+++||+.++. ++++++.+||+.||++|+++.|+.       +
T Consensus         3 ~~~mR~HTa~HlL~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~-~t~e~l~~iE~~~n~~I~~~~~v~~~~~~~~e   81 (151)
T d1v4pa_           3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREE   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHH
T ss_pred             cccHHHhHHHHHHHHHHHHHhCcCceeeeeceecCCccEEEEecccc-chhHHHHHHHHHHHHhhhcccccceEEeeccc
Confidence            4689999999999999999998 3 4567888999999999988776 999999999999999999999863       5


Q ss_pred             HHHhhccc------CCC---cEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEe-ecCCCeEEEEEEe
Q psy6340          74 RHMRASEI------YPD---DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYK-SYNHGVRSIKCLT  136 (158)
Q Consensus        74 ~~~~~~~~------~~~---~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~-~~~~~~~Ri~~~~  136 (158)
                      |...+++.      +|+   .+|+|.|++    +|.+|||||||+||++||.|+|++++ ++++|.+||+|..
T Consensus        82 a~~~~~~~~~~~~~~~~~~~~iriv~i~~----~d~~~CgGTHV~~T~eIg~~kI~~~~~~~~kg~~Ri~f~l  150 (151)
T d1v4pa_          82 AEKMFGEDMYDLFPVPEDVRILKVVVIED----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFEL  150 (151)
T ss_dssp             HHHHHGGGGSCSSCCCTTCCEEEEEEETT----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccccccccCCccccceEEEeecC----ceeeCCCCCccCChhhceeEEEEEEEeeccCCcEEEEEEe
Confidence            66666542      222   389999999    99999999999999999999999987 5788999999964

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=2.8e-30  Score=191.21  Aligned_cols=143  Identities=20%  Similarity=0.296  Sum_probs=117.3

Q ss_pred             HHHHhHHHHHHHHHHHHHhC-CeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHH
Q psy6340           5 CMRAHTTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHM   76 (158)
Q Consensus         5 ~~~~HTa~HlL~~al~~~~~-~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~   76 (158)
                      ...+|||+|||.+||+++|| ...+.|+.+ +++||+||..+.+ ++++++..||+.||++|.++.|+.       +|..
T Consensus         9 ~i~~HSathlL~~Al~~~~~~~~~~~G~~~-~~gf~~Df~~~~~-lt~edl~~IE~~m~~iI~~~~~i~~~~~~~~eA~~   86 (179)
T d1nyra3           9 EVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQN-ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKE   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSC-CCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHH
T ss_pred             HHHhHhHHHHHHHHHHHHCCCcEEEEeeee-ccceEEEEeeccc-CCHHHHHHHHHHHHHHHHhhcceEEEEcCHHHHHH
Confidence            34579999999999999999 667777766 7899999998777 999999999999999999999753       4555


Q ss_pred             hhcc----------cCCC-cEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEeCH
Q psy6340          77 RASE----------IYPD-DVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLTGE  138 (158)
Q Consensus        77 ~~~~----------~~~~-~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~g~  138 (158)
                      +|++          .+++ .++++..|+    + +++|+||||+||++||.|+|+++++.       +++++||++++.+
T Consensus        87 ~f~~~~~k~~~i~~~~~~~~v~vy~~g~----~-~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~ri~G~a~~  161 (179)
T d1nyra3          87 LFSNDEYKLELIDAIPEDENVTLYSQGD----F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFF  161 (179)
T ss_dssp             HCSSCHHHHHHHCCCSSSCCCEEEEETT----E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEES
T ss_pred             HhccCccceehhhhcCCCCcEEEEeeCC----E-EEecCCCCCccccccCceEEEEeecccccCccchhheeeeHhhccC
Confidence            5432          2233 588999999    6 89999999999999999999999764       6678999999987


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy6340         139 SSKAAVENGKQLSAAVK  155 (158)
Q Consensus       139 ~a~~~~~~~~~~~~~~~  155 (158)
                      .- +.+.+..+.++|..
T Consensus       162 ~~-~~L~~~l~~leEa~  177 (179)
T d1nyra3         162 DK-KELKAHLQMLEERK  177 (179)
T ss_dssp             SH-HHHHHHHHHHHHHH
T ss_pred             CH-HHHHHHHHHHHHHh
Confidence            53 55566666776654

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.9e-26  Score=166.71  Aligned_cols=127  Identities=18%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             HHHHhHHHHHHHHHHHHHhCCeeecceeeeCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCcHh-------HHHHh
Q psy6340           5 CMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVD-------RRHMR   77 (158)
Q Consensus         5 ~~~~HTa~HlL~~al~~~~~~~~~~g~~~~~~~~~~df~~~~~~~~~~~l~~iE~~~n~~I~~~~~~~-------~~~~~   77 (158)
                      ..-+||++|||..|++++|+++....++..+++||+||+.+.+ ++.+|+..||.+|+++|..+.|+.       .+...
T Consensus         7 ~v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~~GfyyD~~~~~~-~~~edl~~ie~~m~~ii~~~~~~~~~~~s~~~a~~~   85 (162)
T d1tkea2           7 EIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARET   85 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcEEEeccccCCeEEEEeeccCC-CCHHHHHHHHHHHHHHHHhcCCceEEEechHHHHHH
Confidence            3468999999999999999867766677779999999998777 999999999999999999999752       33332


Q ss_pred             hcc------------cCC--CcEEEEEeCCCCceeeeecCCCcccccccccccEEEEeEeec-------CCCeEEEEEEe
Q psy6340          78 ASE------------IYP--DDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSY-------NHGVRSIKCLT  136 (158)
Q Consensus        78 ~~~------------~~~--~~~riv~i~~~~~~~~~~~CgGtHV~~T~eI~~~~I~~~~~~-------~~~~~Ri~~~~  136 (158)
                      +..            ..+  ..+.+++.|+    + .+.|.||||+||+.|+.|+|+++++.       ++++||||+++
T Consensus        86 ~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~----~-~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiyg~a  160 (162)
T d1tkea2          86 FANRGESYKVSILDENIAHDDKPGLYFHEE----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  160 (162)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTCCCEEEEETT----E-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             HHHhhcchhhheeeccccccccceeeccCc----e-EeecCCCccccCcccceEEEEEechhhcCCCCCCcccEEEEEEE
Confidence            211            111  2478899999    6 89999999999999999999999985       88899999998


Q ss_pred             C
Q psy6340         137 G  137 (158)
Q Consensus       137 g  137 (158)
                      +
T Consensus       161 f  161 (162)
T d1tkea2         161 W  161 (162)
T ss_dssp             C
T ss_pred             e
Confidence            6