Psyllid ID: psy6374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MGMVPIHRATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHcccEEEEcccccccccEEEEEEccccccHHHHHHHHccc
cccccEEHEcEcccccccccccccHccccccccccccccccccccccccccHHHHccccccccccccccHHcccccccccccccccHHHccccccHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccEccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEEcccccHHHHHHccccc
mgmvpihratfrnslgdkkekkpaekkttekkpeekkkpaaagqasgsagdkpaaakkdakkapekkaagdkkpaaaaakkpadkkaaaakkptdkkagdkkakaakpaqkgvlkkagakstpgvkknvpkkalpvkkgalkpkkgvpaklqkggkkplgkneqgQVKKALKSKLKVLkgghhtrtrkirtsvrfhrprtqrggaapkymrrsvprrnrmdafniikyplttESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNtlirpdgkkKAYVRLARDYDALDVANKIGII
mgmvpihratfrnslgdkkekkpaekkttekkpeekkkpaaagqasgsagdkpaaakkdakkapekkaagdkkpaaaaakkpadkkaaaakkptdkkagdkkakaakpaqkgvlkkagakstpgvkknvpkkalpvkkgalkpkkgvpaklqkggkkplgkneqgqvKKALKSklkvlkgghhtrtrkirtsvrfhrprtqrggaapkymrrsvprrnrmdaFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKvntlirpdgkkkayvrlardydaldvankigii
MGMVPIHRATFRNSLGDkkekkpaekkttekkpeekkkpaaagqasgsagdkpaaakkdakkapekkaagdkkpaaaaakkpadkkaaaakkptdkkagdkkakaakpaQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAklqkggkkplgkNEQGQvkkalksklkvlkGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
****************************************************************************************************************************************************************************************************************************DAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI***
*********************************************************************************************************************************************************************************************RTSVRFHRPRTQR***********VPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
MGMVPIHRATFRNSL*****************************************************************************************************************VPKKALPVKKG********************************KSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
***VPIHRATFRNS***************************************************************************************************************************************************************K*KVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
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MGMVPIHRATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
P62752156 60S ribosomal protein L23 yes N/A 0.413 0.807 0.738 3e-46
P62751156 60S ribosomal protein L23 yes N/A 0.413 0.807 0.738 3e-46
P62750156 60S ribosomal protein L23 yes N/A 0.413 0.807 0.738 3e-46
Q24JY1156 60S ribosomal protein L23 yes N/A 0.413 0.807 0.738 3e-46
O22644154 60S ribosomal protein L23 N/A N/A 0.488 0.967 0.647 3e-41
Q9AT35154 60S ribosomal protein L23 N/A N/A 0.396 0.785 0.727 7e-40
Q20647146 60S ribosomal protein L23 yes N/A 0.468 0.979 0.573 4e-39
P48162147 60S ribosomal protein L23 no N/A 0.449 0.931 0.591 4e-38
P51997158 60S ribosomal protein L25 N/A N/A 0.390 0.753 0.655 5e-38
Q07761154 60S ribosomal protein L23 N/A N/A 0.396 0.785 0.710 9e-38
>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 106/126 (84%)

Query: 180 GGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKI 239
           G H  + +KIRTS  F RP+T R    PKY R+S PRRN++D + IIK+PLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 240 EDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299
           EDNNTLVFIV ++ANKH IK AVKK+YDI+VAKVNTLIRPDG+KKAYVRLA DYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 300 NKIGII 305
           NKIGII
Sbjct: 151 NKIGII 156
This protein binds to a specific region on the 26S rRNA.
Rattus norvegicus (taxid: 10116)
>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=1 SV=1 Back     alignment and function description
>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1 Back     alignment and function description
>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1 Back     alignment and function description
>sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2 PE=3 SV=1 Back     alignment and function description
>sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=3 SV=1 Back     alignment and function description
>sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2 Back     alignment and function description
>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
193690532 430 PREDICTED: hypothetical protein LOC10016 0.455 0.323 0.841 6e-64
307095104314 ribosomal protein L23A [Triatoma matogro 0.580 0.563 0.725 2e-63
307211205240 60S ribosomal protein L23a [Harpegnathos 0.580 0.737 0.655 1e-62
307211204237 60S ribosomal protein L23a [Harpegnathos 0.580 0.746 0.640 3e-61
70909775272 ribosomal protein L23Ae [Georissus sp. A 0.875 0.981 0.534 4e-61
91090868278 PREDICTED: similar to ribosomal protein 0.557 0.611 0.715 6e-60
66549799241 PREDICTED: 60S ribosomal protein L23a [A 0.524 0.663 0.713 3e-59
307178254240 60S ribosomal protein L23a [Camponotus f 0.518 0.658 0.710 2e-58
380018994241 PREDICTED: 60S ribosomal protein L23a-li 0.524 0.663 0.707 3e-58
350421481241 PREDICTED: 60S ribosomal protein L23a-li 0.498 0.630 0.715 5e-58
>gi|193690532|ref|XP_001942614.1| PREDICTED: hypothetical protein LOC100166785 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 126/139 (90%)

Query: 167 VKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNII 226
           VKKALKSK++ LKG H TR RKIR SV F RP+T +    PKY R+SVP+RNRMDAFNII
Sbjct: 292 VKKALKSKIRTLKGPHGTRIRKIRYSVHFRRPKTFQPPRNPKYPRKSVPKRNRMDAFNII 351

Query: 227 KYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAY 286
           K+PLTTESAMKKIEDNNTLVFIVHL+ANKHH+KAAVKKMYDINVAKVNTLIRPDGKKKAY
Sbjct: 352 KFPLTTESAMKKIEDNNTLVFIVHLRANKHHVKAAVKKMYDINVAKVNTLIRPDGKKKAY 411

Query: 287 VRLARDYDALDVANKIGII 305
           VRLARDYDALDVANKIGII
Sbjct: 412 VRLARDYDALDVANKIGII 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307095104|gb|ADN29858.1| ribosomal protein L23A [Triatoma matogrossensis] Back     alignment and taxonomy information
>gi|307211205|gb|EFN87405.1| 60S ribosomal protein L23a [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307211204|gb|EFN87404.1| 60S ribosomal protein L23a [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|70909775|emb|CAJ17313.1| ribosomal protein L23Ae [Georissus sp. APV-2005] Back     alignment and taxonomy information
>gi|91090868|ref|XP_967229.1| PREDICTED: similar to ribosomal protein L23Ae isoform 1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|66549799|ref|XP_393135.2| PREDICTED: 60S ribosomal protein L23a [Apis mellifera] Back     alignment and taxonomy information
>gi|307178254|gb|EFN67039.1| 60S ribosomal protein L23a [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380018994|ref|XP_003693403.1| PREDICTED: 60S ribosomal protein L23a-like [Apis florea] Back     alignment and taxonomy information
>gi|350421481|ref|XP_003492856.1| PREDICTED: 60S ribosomal protein L23a-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
RGD|1564606156 RGD1564606 "similar to 60S rib 0.413 0.807 0.738 5.3e-47
ZFIN|ZDB-GENE-030131-7479155 rpl23a "ribosomal protein L23a 0.413 0.812 0.738 6.8e-47
UNIPROTKB|E1BS06155 RPL23A "Uncharacterized protei 0.396 0.780 0.752 1.4e-46
RGD|1587481156 LOC689899 "similar to 60S ribo 0.413 0.807 0.738 1.8e-46
UNIPROTKB|Q24JY1156 RPL23A "60S ribosomal protein 0.413 0.807 0.738 2.3e-46
UNIPROTKB|E2QZG2156 LOC478212 "Uncharacterized pro 0.413 0.807 0.738 2.3e-46
UNIPROTKB|J9PAG2156 LOC100687735 "Uncharacterized 0.413 0.807 0.738 2.3e-46
UNIPROTKB|P62750156 RPL23A "60S ribosomal protein 0.413 0.807 0.738 2.3e-46
UNIPROTKB|F2Z522156 LOC100623805 "Uncharacterized 0.413 0.807 0.738 2.3e-46
UNIPROTKB|D4P8H6156 rpl23a "Ribosomal protein L23a 0.413 0.807 0.738 2.3e-46
RGD|1564606 RGD1564606 "similar to 60S ribosomal protein L23a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 467 (169.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 93/126 (73%), Positives = 106/126 (84%)

Query:   180 GGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKI 239
             G H  + +KIRTS  F RP+T R    PKY R+S PRRN++D + IIK+PLTTESAMKKI
Sbjct:    31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query:   240 EDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299
             EDNNTLVFIV ++ANKH IK AVKK+YDI+VAKVNTLIRPDG+KKAYVRLA DYDALDVA
Sbjct:    91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query:   300 NKIGII 305
             NKIGII
Sbjct:   151 NKIGII 156
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA
ZFIN|ZDB-GENE-030131-7479 rpl23a "ribosomal protein L23a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS06 RPL23A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1587481 LOC689899 "similar to 60S ribosomal protein L23a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q24JY1 RPL23A "60S ribosomal protein L23a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZG2 LOC478212 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAG2 LOC100687735 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62750 RPL23A "60S ribosomal protein L23a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z522 LOC100623805 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4P8H6 rpl23a "Ribosomal protein L23a" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q20647R23A2_CAEELNo assigned EC number0.57340.46880.9794yesN/A
A4FVY0RL23_METM5No assigned EC number0.50580.27860.9883yesN/A
P62752RL23A_RATNo assigned EC number0.73800.41310.8076yesN/A
P62750RL23A_HUMANNo assigned EC number0.73800.41310.8076yesN/A
P62751RL23A_MOUSENo assigned EC number0.73800.41310.8076yesN/A
A9A9B6RL23_METM6No assigned EC number0.50580.27860.9883yesN/A
Q54BQ3RL23A_DICDINo assigned EC number0.53960.41310.7455yesN/A
A6VHD4RL23_METM7No assigned EC number0.50580.27860.9883yesN/A
Q24JY1RL23A_BOVINNo assigned EC number0.73800.41310.8076yesN/A
P04456RL25_YEASTNo assigned EC number0.56770.38680.8309yesN/A
Q4JB42RL23_SULACNo assigned EC number0.50610.26550.9878yesN/A
Q975I3RL23_SULTONo assigned EC number0.50610.26550.9878yesN/A
Q9M3C3R23A2_ARATHNo assigned EC number0.70580.39010.7727yesN/A
P48045RL25_KLULANo assigned EC number0.52550.44910.9647yesN/A
P54016RL23_METJANo assigned EC number0.51760.27860.9883yesN/A
Q9YFM0RL23_AERPENo assigned EC number0.50680.23930.8488yesN/A
O74391RL25B_SCHPONo assigned EC number0.58130.42290.9148yesN/A
Q8TY92RL23_METKANo assigned EC number0.50580.27860.8947yesN/A
A6UV66RL23_META3No assigned EC number0.50580.27860.9883yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
PTZ00191145 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Pr 2e-43
PRK1454884 PRK14548, PRK14548, 50S ribosomal protein L23P; Pr 2e-29
TIGR0363677 TIGR03636, L23_arch, archaeal ribosomal protein L2 4e-25
COG008994 COG0089, RplW, Ribosomal protein L23 [Translation, 1e-18
PRK0573892 PRK05738, rplW, 50S ribosomal protein L23; Reviewe 2e-13
PRK149001052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-12
pfam0027690 pfam00276, Ribosomal_L23, Ribosomal protein L23 9e-12
PRK149001052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-08
PRK149001052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-07
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 1e-07
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 3e-07
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-07
CHL0003093 CHL00030, rpl23, ribosomal protein L23 7e-07
pfam0393952 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, 2e-06
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 3e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 7e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 7e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 5e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-05
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 9e-05
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 1e-04
PLN032371465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 1e-04
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 2e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
PRK12373400 PRK12373, PRK12373, NADH dehydrogenase subunit E; 2e-04
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 3e-04
PRK12372413 PRK12372, PRK12372, ribonuclease III; Reviewed 4e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 5e-04
PRK149001052 PRK14900, valS, valyl-tRNA synthetase; Provisional 6e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
PRK00708209 PRK00708, PRK00708, sec-independent translocase; P 8e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
PRK11642813 PRK11642, PRK11642, exoribonuclease R; Provisional 0.002
PRK05035695 PRK05035, PRK05035, electron transport complex pro 0.003
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.003
PRK12472508 PRK12472, PRK12472, hypothetical protein; Provisio 0.003
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.004
PRK13108460 PRK13108, PRK13108, prolipoprotein diacylglyceryl 0.004
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional Back     alignment and domain information 
 Score =  145 bits (368), Expect = 2e-43
 Identities = 88/142 (61%), Positives = 102/142 (71%)

Query: 164 QGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAF 223
             + KK  K   K  K G   + RK+RTSVRF RP+T R    PKY RR  P   ++D +
Sbjct: 4   AKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKY 63

Query: 224 NIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK 283
           +IIKYPLTTE AMKKIEDNNTLVFIV  +ANK  IK AV+K+YD+ V KVNTLI PDG K
Sbjct: 64  SIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK 123

Query: 284 KAYVRLARDYDALDVANKIGII 305
           KAY+RL+ D DALDVANKIGII
Sbjct: 124 KAYIRLSPDVDALDVANKIGII 145

Length = 145
>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23 Back     alignment and domain information
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal domain Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
PTZ00191145 60S ribosomal protein L23a; Provisional 100.0
KOG1751|consensus157 100.0
PRK1454884 50S ribosomal protein L23P; Provisional 99.98
TIGR0363677 L23_arch archaeal ribosomal protein L23. This mode 99.97
PRK0573892 rplW 50S ribosomal protein L23; Reviewed 99.93
CHL0003093 rpl23 ribosomal protein L23 99.92
PRK12280158 rplW 50S ribosomal protein L23; Reviewed 99.91
COG008994 RplW Ribosomal protein L23 [Translation, ribosomal 99.91
PF0027691 Ribosomal_L23: Ribosomal protein L23; InterPro: IP 99.89
PF0393954 Ribosomal_L23eN: Ribosomal protein L23, N-terminal 99.74
KOG4089|consensus165 94.96
>PTZ00191 60S ribosomal protein L23a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.7e-58  Score=395.34  Aligned_cols=141  Identities=62%  Similarity=0.878  Sum_probs=137.5

Q ss_pred             hhhhHHHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCC
Q psy6374         164 QGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNN  243 (305)
Q Consensus       164 a~akaKAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiEdnN  243 (305)
                      ..++++|++|+++|++|+|+ +.+|||||++||||+||+|+|+|+|||+|+|++|+||+|+||++||+||++|+++|++|
T Consensus         5 ~~~~~ka~~a~k~~~~g~~~-~~~k~r~~~~f~rpktl~l~r~pky~r~~~~~~~~md~~~IIk~Pl~TEKa~~~~E~~N   83 (145)
T PTZ00191          5 KKAKKKAKKAAKAAKKGVKV-KKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNN   83 (145)
T ss_pred             chHHHHHHHHHHHHhccccc-ceeEeeecceecCCccccCCCCCCCcccccCCCCCCchhhhhhcccccHHHHHHHhhCC
Confidence            45778899999999999998 67999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374         244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII  305 (305)
Q Consensus       244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii  305 (305)
                      +|||+||++|||+||++|||+||||+|.+|||||+|+|||||||+|.+|||||||||+||||
T Consensus        84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~kiGi~  145 (145)
T PTZ00191         84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKIGII  145 (145)
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>KOG1751|consensus Back     alignment and domain information
>PRK14548 50S ribosomal protein L23P; Provisional Back     alignment and domain information
>TIGR03636 L23_arch archaeal ribosomal protein L23 Back     alignment and domain information
>PRK05738 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>CHL00030 rpl23 ribosomal protein L23 Back     alignment and domain information
>PRK12280 rplW 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF03939 Ribosomal_L23eN: Ribosomal protein L23, N-terminal domain; InterPro: IPR005633 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG4089|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
2zkr_s156 Structure Of A Mammalian Ribosomal 60s Subunit With 4e-47
3izr_X152 Localization Of The Large Subunit Ribosomal Protein 1e-40
2go5_4152 Structure Of Signal Recognition Particle Receptor ( 1e-39
2ww9_K142 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 1e-36
3zf7_X164 High-resolution Cryo-electron Microscopy Structure 3e-31
4a17_R150 T.Thermophila 60s Ribosomal Subunit In Complex With 7e-26
1s1i_T83 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-26
3jyw_T80 Structure Of The 60s Proteins For Eukaryotic Riboso 8e-25
3bbo_V198 Homology Model For The Spinach Chloroplast 50s Subu 4e-19
3j21_T86 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-15
1s72_S85 Refined Crystal Structure Of The Haloarcula Marismo 2e-12
1ffk_P84 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-12
3g4s_S81 Co-Crystal Structure Of Tiamulin Bound To The Large 3e-11
1p85_R100 Real Space Refined Coordinates Of The 50s Subunit F 3e-05
2j28_T99 Model Of E. Coli Srp Bound To 70s Rncs Length = 99 3e-05
3fik_T93 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 3e-05
2gya_R92 Structure Of The 50s Subunit Of A Pre-Translocation 4e-05
>pdb|2ZKR|SS Chain s, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 156 Back     alignment and structure 
Iteration: 1

 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 106/126 (84%)
Query: 180 GGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKI 239
           G H  + +KIRTS  F RP+T R    PKY R+S PRRN++D + IIK+PLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 240 EDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299
           EDNNTLVFIV ++ANKH IK AVKK+YDI+VAKVNTLIRPDG+KKAYVRLA DYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 300 NKIGII 305
           NKIGII
Sbjct: 151 NKIGII 156
>pdb|3IZR|X Chain X, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 152 Back     alignment and structure
>pdb|2GO5|4 Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex Length = 152 Back     alignment and structure
>pdb|2WW9|K Chain K, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 142 Back     alignment and structure
>pdb|3ZF7|X Chain X, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 164 Back     alignment and structure
>pdb|4A17|R Chain R, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 150 Back     alignment and structure
>pdb|1S1I|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 83 Back     alignment and structure
>pdb|3JYW|T Chain T, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 80 Back     alignment and structure
>pdb|3BBO|V Chain V, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198 Back     alignment and structure
>pdb|3J21|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 86 Back     alignment and structure
>pdb|1S72|S Chain S, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 85 Back     alignment and structure
>pdb|1FFK|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 84 Back     alignment and structure
>pdb|3G4S|S Chain S, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 81 Back     alignment and structure
>pdb|1P85|R Chain R, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 100 Back     alignment and structure
>pdb|2J28|T Chain T, Model Of E. Coli Srp Bound To 70s Rncs Length = 99 Back     alignment and structure
>pdb|3FIK|T Chain T, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 93 Back     alignment and structure
>pdb|2GYA|R Chain R, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 9e-49
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 1e-45
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 3e-44
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 2e-43
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 2e-41
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 7e-40
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 1e-13
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 3e-13
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 1e-12
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T Length = 142 Back     alignment and structure
 Score =  158 bits (401), Expect = 9e-49
 Identities = 73/138 (52%), Positives = 103/138 (74%)

Query: 168 KKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIK 227
            KA  +K  V+KG +  +  K+RTS  F  P+T +   APKY  ++VP  NR+D++ +I+
Sbjct: 5   AKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIE 64

Query: 228 YPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYV 287
            P+T+E+AMKK+ED N LVF V ++ANK+ IK AVK++Y+++V KVNTL+RP+G KKAYV
Sbjct: 65  QPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYV 124

Query: 288 RLARDYDALDVANKIGII 305
           RL  DYDALD+AN+IG I
Sbjct: 125 RLTADYDALDIANRIGYI 142
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Length = 150 Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 156 Back     alignment and structure
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198 Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Length = 85 Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Length = 95 Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ... Length = 93 Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
3u5e_X142 60S ribosomal protein L25; translation, ribosome, 100.0
3iz5_X152 60S ribosomal protein L23A (L23P); eukaryotic ribo 100.0
4a17_R150 RPL23A, 60S ribosomal protein L21; eukaryotic ribo 100.0
2zkr_s156 60S ribosomal protein L23A; protein-RNA complex, 6 100.0
3bbo_V198 Ribosomal protein L23; large ribosomal subunit, sp 100.0
3j21_T86 50S ribosomal protein L23P; archaea, archaeal, KIN 100.0
1vq8_S85 50S ribosomal protein L23P; ribosome 50S, protein- 100.0
3tve_T92 50S ribosomal protein L23; RNA, ribosome, tRNA, tr 99.96
2zjr_Q95 50S ribosomal protein L23; ribosome, large ribosom 99.96
3r8s_T93 50S ribosomal protein L23; protein biosynthesis, R 99.96
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T Back     alignment and structure
Probab=100.00  E-value=7.1e-63  Score=421.09  Aligned_cols=139  Identities=53%  Similarity=0.841  Sum_probs=120.3

Q ss_pred             hHHHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEE
Q psy6374         167 VKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLV  246 (305)
Q Consensus       167 kaKAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiEdnNtlV  246 (305)
                      ++|||+|+|+||||+|||+++++|||++||||+||+|+|+|+|||+|+|+||+||+|+||++||+||++|+++|+||+||
T Consensus         4 ~~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kld~~~IIk~PliTEKa~~~~E~~N~~v   83 (142)
T 3u5e_X            4 SAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILV   83 (142)
T ss_dssp             ------------------CCCCCCSCSCCCCCCCCCCCCCCSSCSSSSCCCCTTCHHHHEEEECCCHHHHHHHHHHCEEE
T ss_pred             hhHHHHHHHHHhccCCcccccccccCccccCccccccccCCCCCcccCCCCCCCCHHHhhhcCCcCHHHHHHHHhCCEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374         247 FIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII  305 (305)
Q Consensus       247 FiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii  305 (305)
                      |+||++|||+||++|||+||||+|.+|||||+|+|||||||+|.+|||||||||+||||
T Consensus        84 F~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkigii  142 (142)
T 3u5e_X           84 FQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI  142 (142)
T ss_dssp             EEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHHTCC
T ss_pred             EEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999998
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R Back     alignment and structure
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Back     alignment and structure
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Back     alignment and structure
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Back     alignment and structure
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1vqos181 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon 1e-30
d2qamt193 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich 1e-18
d2j01x193 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t 3e-16
d2zjrq193 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc 1e-14
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  108 bits (272), Expect = 1e-30
 Identities = 35/81 (43%), Positives = 54/81 (66%)

Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
           ++++IK+P  TE AM  ++  N L F V  +A+K  +  AV++ YD+ V +VNT    DG
Sbjct: 1   SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG 60

Query: 282 KKKAYVRLARDYDALDVANKI 302
           +KKA VRL+ D DA +VA++I
Sbjct: 61  EKKAVVRLSEDDDAQEVASRI 81
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93 Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1vqos181 Ribosomal protein L23 {Archaeon Haloarcula marismo 99.97
d2zjrq193 Ribosomal protein L23 {Deinococcus radiodurans [Ta 99.93
d2qamt193 Ribosomal protein L23 {Escherichia coli [TaxId: 56 99.91
d2j01x193 Ribosomal protein L23 {Thermus thermophilus [TaxId 99.88
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=2.9e-31  Score=205.92  Aligned_cols=81  Identities=43%  Similarity=0.603  Sum_probs=79.3

Q ss_pred             ccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhh
Q psy6374         222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK  301 (305)
Q Consensus       222 ~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANK  301 (305)
                      .|+||++|++||++|.++|++|+|+|.||.+|||.||++|||.||||+|.+|||||+++|+|||||+|.+|++++||||+
T Consensus         1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~~KkA~V~L~~~~~a~dia~k   80 (81)
T d1vqos1           1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR   80 (81)
T ss_dssp             CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred             CcceeeccccCHHHHHHHHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCCcEEEEEEeCCCCcHHHHHhc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q psy6374         302 I  302 (305)
Q Consensus       302 I  302 (305)
                      |
T Consensus        81 i   81 (81)
T d1vqos1          81 I   81 (81)
T ss_dssp             C
T ss_pred             C
Confidence            6
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure