Psyllid ID: psy6441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
Protein Sequence
MIQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHFSAA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHcHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHcccccccHHHHHHHHHHHHHHcccccccccccccccccHHHccccHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccccEEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEEEEEEcccccccEEEEEcccccHccHHHHHHHHHHHHccccHHHHHHHHcccccEEEccHHHHHHHHHHHHEEEEEccccccccEEEccccccEcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MIQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKelnidspqTILKIrklpntiirkdKDVARLTMFQEIELVLsqmpdghgsivngmenthlnsarlpfsvlgvsDMDRVKYLEEQLREASCLGDFEAVCELVSKGidinaqhdmnGWTALHWAAKRGQKDIVSYLLKHgadkslltskeetplalatkpevrillggepgvtintadlpivpnyiknepldprvndyqvsnqnrthqtnpvtanqnvvtTSHHsivnhsttntpaqldgksadvvtTSHHSivnhstantpaQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKelnidspqTILKIrklpntiirkdKDVARLTMFQEIELVLsqmpdghgsivngmenthlnsarlpfsakgvnnypsihntkitrfctrtteeipvcgvhdplgslqgendiipgledhfsaa
Flexible Loop (DISEMBL)
miqklvlkvriaqdmdddFIEIELNRLTELTYYSLLNICCKELnidspqtilkirklpntiirkdKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADkslltskeetplalatkpevriLLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQnrthqtnpvtanqNVVTTSHHSIVNhsttntpaqldGKSADVVTTSHHSivnhstantpaqLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELnidspqtilkirklpntiirkdKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHFSAA
Low Complexity Region (SEG)
MIQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHFSAA
Disordered region (IsUnstruct)
****LVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT*****PLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNE****************************************************************V*******PAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQ****************
Disordered Region (DISOPRED)
*IQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLK*********DFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLS****************HLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHF***
Disordered Region (DISEMBL)
MIQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHFSAA
Disordered Region (DISPRO)
*IQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ*************************************************IVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIP*L*D*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQKLVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQGENDIIPGLEDHFSAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	464	2.2.26 [Sep-21-2011]
Q6AI12	368	Ankyrin repeat domain-con	yes	N/A	0.232	0.293	0.445	6e-23
Q5SUE8	363	Ankyrin repeat domain-con	yes	N/A	0.232	0.297	0.443	1e-22
Q108U1	475	Ankyrin repeat, SAM and b	no	N/A	0.155	0.151	0.460	8e-08
Q07DZ7	474	Ankyrin repeat, SAM and b	no	N/A	0.155	0.151	0.460	3e-07
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.144	0.017	0.470	5e-07
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.144	0.016	0.470	5e-07
Q07E30	475	Ankyrin repeat, SAM and b	N/A	N/A	0.140	0.136	0.454	9e-07
Q07E43	476	Ankyrin repeat, SAM and b	N/A	N/A	0.148	0.144	0.428	1e-06
Q8VD46	475	Ankyrin repeat, SAM and b	no	N/A	0.140	0.136	0.439	1e-06
Q00PJ3	475	Ankyrin repeat, SAM and b	N/A	N/A	0.140	0.136	0.454	1e-06

>sp|Q6AI12|ANR40_HUMAN Ankyrin repeat domain-containing protein 40 OS=Homo sapiens GN=ANKRD40 PE=1 SV=2

 Score =  109 bits (272), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 11/119 (9%)

Query: 119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLLK G
Sbjct: 8   KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSG 67

Query: 179 ADKSLLTSKEETPLALATKPEVRILLGGEPGVTI-----------NTADLPIVPNYIKN 226
           ADK +LT+K E P+ L ++ E+R ++G E                  ++LP VPNY+ N
Sbjct: 68  ADKEILTTKGEMPVQLTSRREIRKIMGVEEEDDDDDDDDNLPQLKKESELPFVPNYLAN 126

Homo sapiens (taxid: 9606)

>sp|Q5SUE8|ANR40_MOUSE Ankyrin repeat domain-containing protein 40 OS=Mus musculus GN=Ankrd40 PE=1 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 7/115 (6%)

Query: 119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLL+ G
Sbjct: 8   KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSG 67

Query: 179 ADKSLLTSKEETPLALATKPEVRILLGGEPGVTI-------NTADLPIVPNYIKN 226
           AD+ +LT+K E P+ L ++ E+R ++G E              ++LP VPNY+ N
Sbjct: 68  ADREILTTKGEMPVQLTSRREIRKIMGVEEADEEEEIPQLKKESELPFVPNYLAN 122

Mus musculus (taxid: 10090)

>sp|Q108U1|ASZ1_LOXAF Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Loxodonta africana GN=ASZ1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 4/76 (5%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  + V  LV++G ++NAQ D NG+TAL WAA++G K++V  LL+ GA+K L T   +TP
Sbjct: 160 GHPQVVALLVAQGAEVNAQ-DENGYTALTWAARQGHKNVVLKLLELGANKMLQTKDGKTP 218

Query: 192 LALATK---PEVRILL 204
             +A K   PE+  LL
Sbjct: 219 SEVANKNKHPEIFSLL 234

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Loxodonta africana (taxid: 9785)

>sp|Q07DZ7|ASZ1_ORNAN Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Ornithorhynchus anatinus GN=ASZ1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  + V  LV  G +INAQ D NG+TAL WAA+ G K  V  LL+ GADK+L T   +TP
Sbjct: 158 GHSQLVALLVGHGAEINAQDD-NGYTALAWAARHGHKTTVLKLLELGADKTLQTQDGKTP 216

Query: 192 LALATK---PEVRILL 204
             +A +   PE+  +L
Sbjct: 217 AEIAKRNKHPELFSML 232

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Ornithorhynchus anatinus (taxid: 9258)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           AS  G  E V  LV +G +INAQ   NG+T L+ AA+    D+V YLL++GA++S  T  
Sbjct: 104 ASLAGQAEVVKVLVKEGANINAQ-SQNGFTPLYMAAQENHIDVVKYLLENGANQSTATED 162

Query: 188 EETPLALA 195
             TPLA+A
Sbjct: 163 GFTPLAVA 170

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           AS  G  E V  LV +G +INAQ   NG+T L+ AA+    D+V YLL++GA++S  T  
Sbjct: 104 ASLAGQAEVVKVLVKEGANINAQ-SQNGFTPLYMAAQENHIDVVKYLLENGANQSTATED 162

Query: 188 EETPLALA 195
             TPLA+A
Sbjct: 163 GFTPLAVA 170

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q07E30|ASZ1_NEONE Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Neofelis nebulosa GN=ASZ1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  + V  LV+ G ++NAQ D NG+TAL WAA++G K++V  LL+ GA+K L T   +TP
Sbjct: 160 GHPQVVALLVAHGAEVNAQ-DENGYTALTWAARQGHKNVVLKLLELGANKMLQTKDGKTP 218

Query: 192 LALATK 197
             +A +
Sbjct: 219 SEIAKR 224

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Neofelis nebulosa (taxid: 61452)

>sp|Q07E43|ASZ1_DASNO Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Dasypus novemcinctus GN=ASZ1 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+  G  + V  LV+ G ++N Q D NG+TAL WAA++G K+++  LL+ GADK L T  
Sbjct: 157 AARAGHPQVVAVLVAYGAEVNTQ-DENGYTALTWAARQGHKNVILKLLELGADKMLQTKD 215

Query: 188 EETPLALATK 197
            +TP  +A +
Sbjct: 216 GKTPSEIAKR 225

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Dasypus novemcinctus (taxid: 9361)

>sp|Q8VD46|ASZ1_MOUSE Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Mus musculus GN=Asz1 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  + V  LV+ G ++NAQ D NG+TAL WAA++G K+++  LL+ GA+K L T    TP
Sbjct: 160 GHTQVVALLVAHGAEVNAQ-DENGYTALTWAARQGHKNVILKLLELGANKMLQTKDGRTP 218

Query: 192 LALATK 197
             +A +
Sbjct: 219 SEIAKR 224

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Mus musculus (taxid: 10090)

>sp|Q00PJ3|ASZ1_ATEAB Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Atelerix albiventris GN=ASZ1 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  + V  LV+ G D+NAQ D NG+TAL WAA++G K +V  LL+ GA+K + T   +TP
Sbjct: 160 GHPQVVALLVAHGADVNAQ-DENGYTALTWAARQGHKHVVLKLLELGANKMIQTKDGKTP 218

Query: 192 LALATK 197
             +A +
Sbjct: 219 SEIAKR 224

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Atelerix albiventris (taxid: 9368)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
52345894	345	ankyrin repeat domain 40 [Xenopus (Silur	0.564	0.759	0.373	2e-45
260808919	305	hypothetical protein BRAFLDRAFT_199979 [	0.571	0.868	0.389	3e-44
196000518	320	hypothetical protein TRIADDRAFT_53777 [T	0.476	0.690	0.401	7e-44
291238845	252	PREDICTED: ankyrin repeat-containing pro	0.459	0.845	0.420	7e-43
268370146	260	ankyrin repeat domain 40 [Nasonia vitrip	0.534	0.953	0.373	1e-42
71895839	351	ankyrin repeat domain-containing protein	0.566	0.749	0.364	2e-42
348562179	364	PREDICTED: ankyrin repeat domain-contain	0.558	0.711	0.36	2e-42
241802305	248	ankyrin repeat-containing protein [Ixode	0.469	0.879	0.405	9e-42
344285839	367	PREDICTED: ankyrin repeat domain-contain	0.564	0.713	0.350	3e-41
355668498	363	ankyrin repeat domain 40 [Mustela putori	0.564	0.721	0.350	3e-41

>gi|52345894|ref|NP_001004991.1| ankyrin repeat domain 40 [Xenopus (Silurana) tropicalis] gi|49522502|gb|AAH75561.1| ankyrin repeat domain 40 [Xenopus (Silurana) tropicalis] gi|89266679|emb|CAJ81427.1| ankyrin repeat domain 40 [Xenopus (Silurana) tropicalis]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 172/327 (52%), Gaps = 65/327 (19%)

Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +EE LREA+ LGD E V +L+  G ++N+Q+++NGWT LHWA KR    +VS+LL+ GAD
Sbjct: 1   MEEGLREAAALGDLEEVQKLLRCGANVNSQNEINGWTCLHWACKRNHLHVVSFLLEAGAD 60

Query: 181 KSLLTSKEETPLALATKPEVRILLG---GEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ 237
           + +LTSK E P+ L +K +++ LLG    E   T   ++LP VPNY+ N P       + 
Sbjct: 61  EDILTSKGERPVQLTSKKDIKRLLGVEEPETEETKPDSELPFVPNYLANPPFP---YSFS 117

Query: 238 VSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTN-------------------------- 271
             N ++     P++ N    T  H ++ + S +N                          
Sbjct: 118 RENTDKEPSAAPLSENGTSCTQPHLAVTHSSLSNGMENVCISTSSTSEDPLPALFFNRDV 177

Query: 272 -----------------TPAQLDGKS--ADVVTTSHHSIVNHS----------TANTPAQ 302
                            +PA    +S  + V  + HH  VN            T   P+ 
Sbjct: 178 HVAPDCALSPVQSGPVCSPAVPPNRSLFSPVSNSHHHGSVNAGPMQVFQPFFFTGAFPSN 237

Query: 303 LDELVLKVRI--AQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPN 360
           + ELVLKVRI  +   D+DFIE+E++R  ELTY  LL +CC EL + SP+ + KIRKLPN
Sbjct: 238 MKELVLKVRIQCSATGDNDFIEVEMDR-QELTYRELLRVCCVELKV-SPENVEKIRKLPN 295

Query: 361 TIIRKDKDVARLTMFQEIELVLSQMPD 387
           T++RKDKDVARL  FQE+ELVL    D
Sbjct: 296 TMLRKDKDVARLQDFQELELVLRNSAD 322

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260808919|ref|XP_002599254.1| hypothetical protein BRAFLDRAFT_199979 [Branchiostoma floridae] gi|229284531|gb|EEN55266.1| hypothetical protein BRAFLDRAFT_199979 [Branchiostoma floridae]

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 167/303 (55%), Gaps = 38/303 (12%)

Query: 115 MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
           MD VK  EE+LREA+C+GD + +C L++ G+ +N+Q+ +NGW  LHWA KRG K+IVS L
Sbjct: 1   MDPVKEKEERLREAACVGDEDTLCSLLASGVGVNSQNPVNGWGPLHWAVKRGHKNIVSRL 60

Query: 175 LKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTAD-LPIVPNYIKNEPLDPRV 233
           L  GAD +L TS+ + P  L    ++R LLG  P  +    + LPI PNY+ N P  P V
Sbjct: 61  LTAGADPALQTSQGQVPAQLTDSGDIRSLLGASPDESPPKIEPLPITPNYMANPPF-PYV 119

Query: 234 NDYQ-----VSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPA--QLDGKSADVVTT 286
              Q     V+     H+T       +     +++      T++ A   + G    +VT 
Sbjct: 120 KQEQGPLSAVNGTAAGHRTAMEQPQSHAPVRQYYAPPLDQGTSSAALCSIYGLCQSIVTI 179

Query: 287 -----SHHSIVNHSTANTPAQLD--------------------ELVLKVRIA--QDMDDD 319
                S   I   S  N P+  +                    ELVLKVR+A    M++D
Sbjct: 180 VQALESRICICICSRYNGPSAYNTCFAGTDKNLVSSMILCVFPELVLKVRVANPMQMEND 239

Query: 320 FIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIE 379
           FIE+E++R ++LT+  LL  CC+EL +  P+ + K+RKLPNT++RKDKDV RL  FQEIE
Sbjct: 240 FIEVEMDR-SKLTFRDLLATCCRELQVQ-PEKVQKVRKLPNTMLRKDKDVTRLHDFQEIE 297

Query: 380 LVL 382
           LVL
Sbjct: 298 LVL 300

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196000518|ref|XP_002110127.1| hypothetical protein TRIADDRAFT_53777 [Trichoplax adhaerens] gi|190588251|gb|EDV28293.1| hypothetical protein TRIADDRAFT_53777 [Trichoplax adhaerens]

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 156/279 (55%), Gaps = 58/279 (20%)

Query: 115 MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
           M+ V  +EE+LRE +CLG+ + V  LV +G++IN+QH +NGWTALHWAA RG  DIV+YL
Sbjct: 1   MNPVHGIEERLRECACLGEKDTVQLLVQRGVNINSQHKINGWTALHWAACRGHNDIVAYL 60

Query: 175 LKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVT-----------INTADLPIVPNY 223
           L  GA+ SLLT   ET   L++  E++++L    GV+            N  +LPI PNY
Sbjct: 61  LSEGAEPSLLTKSGETAAQLSSSEEIKVMLNNAAGVSDIGASPNNSPKTNKTELPITPNY 120

Query: 224 IKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADV 283
           ++N P                    P +              N + T T    +G+S   
Sbjct: 121 MQNPPF-------------------PYS--------------NTTVTETTVSQNGRS--- 144

Query: 284 VTTSHHSIVNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKE 343
            T+   SIV            EL++KVRIA   ++DF+E+EL+R   LTY SL + CC+E
Sbjct: 145 -TSPPKSIVTVG--------GELLVKVRIANSGEEDFVEVELDRFN-LTYESLFDRCCEE 194

Query: 344 LNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVL 382
           L++ S   + KIRKLPN +IRKDKD+ RLT  QE+E+VL
Sbjct: 195 LDL-SKSAVKKIRKLPNILIRKDKDLQRLTDNQELEVVL 232

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|291238845|ref|XP_002739336.1| PREDICTED: ankyrin repeat-containing protein-like [Saccoglossus kowalevskii]

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/269 (42%), Positives = 149/269 (55%), Gaps = 56/269 (20%)

Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +EE+LRE +CLG+ + + +L+   +D+N+QH +NGWTALHW+ KR    I  YLL HGA+
Sbjct: 1   MEEKLREFACLGNEDGIRKLMEMEVDVNSQHLINGWTALHWSCKRNHVSITKYLLDHGAN 60

Query: 181 KSLLTSKEETPLALATKPEVRILLGGEPGV----TINTAD-LPIVPNYIKNEPLDPRVND 235
           K LLT K E P+ L T P+++ LLGG  G      IN  D LPI P+Y++  P  P  +D
Sbjct: 61  KDLLTEKGEKPVHLTTSPQIKELLGGNEGGDDSPVINKDDSLPITPSYLRY-PEFPYNSD 119

Query: 236 YQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHS 295
              S   +   T      +NV  TSH                                  
Sbjct: 120 ---SGYRKEGYTGNSYTGRNV--TSH---------------------------------- 140

Query: 296 TANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKI 355
                    ELVLKVR+A+ ++ D+IE+E+    ELTY +LL  C KEL I+ P  ++KI
Sbjct: 141 ---------ELVLKVRVAKGLETDYIEVEI-EYVELTYKNLLKTCAKELGIN-PDAVIKI 189

Query: 356 RKLPNTIIRKDKDVARLTMFQEIELVLSQ 384
           RKLPNTIIRKDKDV RL  FQEIELVL +
Sbjct: 190 RKLPNTIIRKDKDVQRLKDFQEIELVLDR 218

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|268370146|ref|NP_001161255.1| ankyrin repeat domain 40 [Nasonia vitripennis]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 165/308 (53%), Gaps = 60/308 (19%)

Query: 115 MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
           MD  K LEEQLREA+C+GD +AV EL++ G+D+NA+H +NGWT LHWA KR   D+V  L
Sbjct: 1   MDERKILEEQLREAACIGDTDAVQELINLGVDVNARHAINGWTPLHWACKRNYLDVVVLL 60

Query: 175 LKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADL---PIVPNYIKNEPLDP 231
           LK GAD+++ + K ETP ++++ P +  LLG     + +++D      VPNYIK+ PL+ 
Sbjct: 61  LKSGADRNVKSDKGETPASVSSNPYILQLLGAPYDFSKSSSDQEAPSFVPNYIKHSPLNC 120

Query: 232 RVNDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSI 291
           +++                      +     S VN S               + T    I
Sbjct: 121 KID----------------------LGYPRESYVNTS---------------INTCQEEI 143

Query: 292 VNHSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQT 351
                          +LK+R+A   D DFIE++L R   L+Y +L+ ICC EL I+ P  
Sbjct: 144 ---------------ILKLRVANSNDSDFIEVDLPRHA-LSYQNLIKICCDELEIN-PTQ 186

Query: 352 ILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSAK 411
           I+K+RKLPNT IR+DKDV RL  +QEIE+VL    +  G   +     + N + +P +  
Sbjct: 187 IVKLRKLPNTKIRRDKDVQRLENYQEIEVVLYSSMNMAGE-ASHKSMQYANGSTVPITP- 244

Query: 412 GVNNYPSI 419
             NNY SI
Sbjct: 245 -TNNYQSI 251

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71895839|ref|NP_001026702.1| ankyrin repeat domain-containing protein 40 [Gallus gallus] gi|53131996|emb|CAG31863.1| hypothetical protein RCJMB04_12j7 [Gallus gallus]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 164/324 (50%), Gaps = 61/324 (18%)

Query: 118 VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
            K L+E+LREA+ LGD E V  L++ G+  NAQ+++NGWT LHWA KR    +V+ LL  
Sbjct: 3   AKELQERLREAAALGDAEEVRRLLALGVSPNAQNEVNGWTCLHWACKRNHAAVVAQLLLG 62

Query: 178 GADKSLLTSKEETPLALATKPEVRILLGGE----PGVTINTADLPIVPNYIKNEPL---- 229
           GADK +L+ K E P  L ++ E+R +LG E    P +T ++++LPI+PNY+ N P     
Sbjct: 63  GADKEILSRKGERPAQLTSRREIRRMLGVEEDELPDIT-SSSELPIIPNYLANPPFPYVY 121

Query: 230 --------DPRVNDYQVSNQNRTHQTNPVTANQNVVTTS--------------------- 260
                   +P VN      + ++  ++ V A +  V  S                     
Sbjct: 122 NSMSSSLPEPPVNGSASHGERQSSASSLVPAAELCVRPSARCEDAAPTAGDGALPAVPGG 181

Query: 261 -----------HHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVN--------HSTANTPA 301
                        ++   S    P    G           S             T   P 
Sbjct: 182 CAGLRCSGAAAQSALFQASWGRAPPSPAGPQQPGAPLGSGSCTGPVPTFQPVFFTGAFPL 241

Query: 302 QLDELVLKVRIAQD--MDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLP 359
            + ELVLKVRI      ++DFIEIEL+R  ELTY  LL + C+EL ++ P+ + KIRKLP
Sbjct: 242 NMQELVLKVRIQNPSLKENDFIEIELDR-QELTYKELLRVSCRELGVN-PEHVQKIRKLP 299

Query: 360 NTIIRKDKDVARLTMFQEIELVLS 383
           NTI+RKDKDVARL  FQE+ELVL+
Sbjct: 300 NTILRKDKDVARLQDFQELELVLT 323

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348562179|ref|XP_003466888.1| PREDICTED: ankyrin repeat domain-containing protein 40-like [Cavia porcellus]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 162/325 (49%), Gaps = 66/325 (20%)

Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLLK GADK
Sbjct: 11  QERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSGADK 70

Query: 182 SLLTSKEETPLALATKPEVRILLG-------GEPGVTINTADLPIVPNYIKNEPLD---- 230
            +LT+K E P+ L ++ E+R ++G       G+       +++P VPNY+ N P      
Sbjct: 71  EILTTKGEMPVQLTSRREIRKIMGAEEEEEEGDSLPQQQESEMPFVPNYLANPPFPFIYT 130

Query: 231 PRVNDY-----------QVSNQN-------------------RTHQTNPVTANQNVVTTS 260
           P V D            Q S+                     R H +  +  N +V   S
Sbjct: 131 PAVEDSAPLQNGGPSTPQASSPKDGSPPMLPPGEPPLLGAFPRDHTSLALVQNGDVPAPS 190

Query: 261 ---------------------HHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANT 299
                                  S+ +   +  P  L+  +      +        T   
Sbjct: 191 AILRTPESTKPGPVCQPPVSQSRSLFSSVPSKPPMSLEPPNGTFAGPAPAFQPFFFTGAF 250

Query: 300 PAQLDELVLKVRIAQD--MDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRK 357
           P  + ELVLKVRI      ++DFIEIEL+R  ELTY  LL + C EL ++ P  + KIRK
Sbjct: 251 PFSMQELVLKVRIQNPSLRENDFIEIELDR-QELTYQELLRVSCCELGVN-PDQVEKIRK 308

Query: 358 LPNTIIRKDKDVARLTMFQEIELVL 382
           LPNT++RKDKDVARL  FQE+ELVL
Sbjct: 309 LPNTLLRKDKDVARLQDFQELELVL 333

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241802305|ref|XP_002414525.1| ankyrin repeat-containing protein [Ixodes scapularis] gi|215508736|gb|EEC18190.1| ankyrin repeat-containing protein [Ixodes scapularis]

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 152/269 (56%), Gaps = 51/269 (18%)

Query: 114 DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSY 173
           ++++ K LEE+LREA+C GD EAV  LV + + IN+QHD+NGWT LHWA KRG   IV Y
Sbjct: 2   EVNKAKILEEKLREAACYGDEEAVITLVERNVRINSQHDINGWTPLHWACKRGHVAIVRY 61

Query: 174 LLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV 233
           LL  GAD +L T K ETP  L    ++R L+GG+    +    LPI P+++ +    P +
Sbjct: 62  LLNQGADPTLTTLKGETPAMLTDNEDIRSLIGGKSHQVVPQTTLPITPHFLSH----PAL 117

Query: 234 NDYQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVN 293
           +DY+               +Q  +T + +S V                            
Sbjct: 118 SDYK--------------GDQVQITRNPNSGVR--------------------------- 136

Query: 294 HSTANTPAQLDELVLKVRIAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTIL 353
              A    ++D LVLKVR+A   D DFIE+EL R T+LT+ +LL  CC EL  +  + + 
Sbjct: 137 ---AFAVEEMD-LVLKVRVAYLDDPDFIEVELPR-TDLTFANLLRTCCDELGAEM-KRVR 190

Query: 354 KIRKLPNTIIRKDKDVARLTMFQEIELVL 382
           K+RKLPNTI+RKDK+V RL+ +QE+ELVL
Sbjct: 191 KLRKLPNTIMRKDKEVQRLSDYQELELVL 219

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344285839|ref|XP_003414667.1| PREDICTED: ankyrin repeat domain-containing protein 40 [Loxodonta africana]

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 160/331 (48%), Gaps = 69/331 (20%)

Query: 119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLLK G
Sbjct: 8   KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSG 67

Query: 179 ADKSLLTSKEETPLALATKPEVRILLGGEPGVTI----------NTADLPIVPNYIKN-- 226
           ADK +LT+K E P+ L ++ E+R ++G E                 ++LP VPNY+ N  
Sbjct: 68  ADKEILTTKGEMPVQLTSRREIRKIMGVEDDDDDDVDGSLPQLKKESELPFVPNYLANPA 127

Query: 227 --------------------------------EPLDPRVNDYQVSNQNRTHQTNPVTANQ 254
                                            PL P      +    R H +  +  N 
Sbjct: 128 FPFIYTTTTEDSAQLQNGGPSTPPALPSVDGSPPLLPSGEPSLLGAFPRDHTSLALVQNG 187

Query: 255 NVVTTS---------------------HHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVN 293
           +V   S                       S+ +   +  P  L+ ++      +      
Sbjct: 188 DVSAPSAILRTPESTKPGPVCQPPVSQSRSLFSSVPSKPPVSLEPQNGTYAGPAPAFQPF 247

Query: 294 HSTANTPAQLDELVLKVRIAQD--MDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQT 351
             T   P  + ELVLKVRI      ++DFIEIEL+R  ELTY  LL + C EL ++ P  
Sbjct: 248 FFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELDR-QELTYQELLRVSCCELGVN-PDQ 305

Query: 352 ILKIRKLPNTIIRKDKDVARLTMFQEIELVL 382
           + KIRKLPNT++RKDKDVARL  FQE+ELVL
Sbjct: 306 VEKIRKLPNTLLRKDKDVARLQDFQELELVL 336

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355668498|gb|AER94211.1| ankyrin repeat domain 40 [Mustela putorius furo]

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 162/328 (49%), Gaps = 66/328 (20%)

Query: 119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLL+ G
Sbjct: 8   KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSG 67

Query: 179 ADKSLLTSKEETPLALATKPEVRILLGGEPGVTINT-------ADLPIVPNYIKN----- 226
           ADK +LT+K E P+ L ++ E+R ++G E     ++       ++LP VPNY+ N     
Sbjct: 68  ADKEILTTKGEMPVQLTSRREIRKIMGVEEDDGADSLPQLKKESELPFVPNYLANPAFPF 127

Query: 227 -----------------------------EPLDPRVNDYQVSNQNRTHQTNPVTANQNVV 257
                                         PL P           R H +  +  N++V 
Sbjct: 128 IYTPAAEDPGQLQNGGPSTPPASPAADGSPPLLPTGEPPLAGAFPRDHTSLALVQNRDVS 187

Query: 258 TTS---------------------HHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHST 296
             S                       S+ +   +  P  L+ ++      +        T
Sbjct: 188 APSAILRTPESTKPGPVCQPPVSQSRSLFSSVPSKPPVSLEPQNGTYAGPTPAFQPFFFT 247

Query: 297 ANTPAQLDELVLKVRIAQD--MDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILK 354
              P  + ELVLKVRI      ++DFIEIEL+R  ELTY  LL + C EL ++ P  + K
Sbjct: 248 GAFPFNMQELVLKVRIQNPSLRENDFIEIELDR-QELTYQELLRVSCCELGVN-PDQVEK 305

Query: 355 IRKLPNTIIRKDKDVARLTMFQEIELVL 382
           IRKLPNT++RKDKDVARL  FQE+ELVL
Sbjct: 306 IRKLPNTLVRKDKDVARLQDFQELELVL 333

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
MGI|MGI:1918702	363	Ankrd40 "ankyrin repeat domain	0.271	0.347	0.413	1.4e-44
UNIPROTKB|Q6AI12	368	ANKRD40 "Ankyrin repeat domain	0.239	0.301	0.448	2.8e-43
WB|WBGene00011270	489	R31.2c [Caenorhabditis elegans	0.282	0.267	0.335	3.5e-07
UNIPROTKB|Q108U1	475	ASZ1 "Ankyrin repeat, SAM and	0.155	0.151	0.460	5.5e-07
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.185	0.5	0.384	7.4e-07
UNIPROTKB|I3LPC2	444	ANKRD11 "Uncharacterized prote	0.209	0.218	0.355	1e-06
MGI|MGI:1921318	475	Asz1 "ankyrin repeat, SAM and	0.469	0.458	0.261	1.2e-06
UNIPROTKB|E1C390	130	DYSFIP1 "Uncharacterized prote	0.142	0.507	0.432	1.3e-06
UNIPROTKB|G3MY56	159	PPP1R27 "Uncharacterized prote	0.168	0.490	0.4	1.3e-06
ZFIN|ZDB-GENE-050208-136	418	gabpb2b "GA repeat binding pro	0.394	0.437	0.270	1.6e-06

MGI|MGI:1918702 Ankrd40 "ankyrin repeat domain 40" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 57/138 (41%), Positives = 86/138 (62%)

Query:   119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
             K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLL+ G
Sbjct:     8 KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSG 67

Query:   179 ADKSLLTSKEETPLALATKPEVRILLGGE--------PGVTINTADLPIVPNYIKNEPLD 230
             AD+ +LT+K E P+ L ++ E+R ++G E        P +    ++LP VPNY+ N P  
Sbjct:    68 ADREILTTKGEMPVQLTSRREIRKIMGVEEADEEEEIPQLK-KESELPFVPNYLAN-PAF 125

Query:   231 PRVNDYQVSNQNRTHQTN 248
             P +  Y  + ++ T   N
Sbjct:   126 PFI--YTPAAEDSTQLQN 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6AI12 ANKRD40 "Ankyrin repeat domain-containing protein 40" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
 Identities = 56/125 (44%), Positives = 79/125 (63%)

Query:   119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
             K  +E+LREA+ LGD   V +LV  G+D+N+Q+++NGWT LHWA KR    +VSYLLK G
Sbjct:     8 KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSG 67

Query:   179 ADKSLLTSKEETPLALATKPEVRILLGGE------------PGVTINTADLPIVPNYIKN 226
             ADK +LT+K E P+ L ++ E+R ++G E            P +    ++LP VPNY+ N
Sbjct:    68 ADKEILTTKGEMPVQLTSRREIRKIMGVEEEDDDDDDDDNLPQLK-KESELPFVPNYLAN 126

Query:   227 EPLDP 231
              P  P
Sbjct:   127 -PAFP 130

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00011270 R31.2c [Caenorhabditis elegans (taxid:6239)]

 Score = 148 (57.2 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 52/155 (33%), Positives = 74/155 (47%)

Query:   120 YLEEQLREAS-C-LGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
             Y E+QL     C LGD   V   L+S  +D N +H  NGWTALHWAA RG  D+V  L++
Sbjct:     8 YQEQQLDFLHLCSLGDENRVRNALLSGRVDKNYRHSSNGWTALHWAANRGHYDVVLLLIE 67

Query:   177 HGADKSLLTSKEETPLALA--TKPEVRILLG-GEP-------GVTINTADL-----P-IV 220
              G   +   +K  TP  +   +K +++ +L  GE          +  T+D      P  V
Sbjct:    68 DGYALNAEDNKNRTPYDVCPESKDKLKAVLELGEERENMVRSSASRRTSDASEQSSPGFV 127

Query:   221 PNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQN 255
             PNY++N P  P    Y + N      T P ++  N
Sbjct:   128 PNYVRNPPF-P----YAMKNSFDNFSTPPASSVSN 157

GO:0016021 "integral to membrane" evidence=IEA

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

UNIPROTKB|Q108U1 ASZ1 "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1" [Loxodonta africana (taxid:9785)]

 Score = 146 (56.5 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 35/76 (46%), Positives = 50/76 (65%)

Query:   132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
             G  + V  LV++G ++NAQ D NG+TAL WAA++G K++V  LL+ GA+K L T   +TP
Sbjct:   160 GHPQVVALLVAQGAEVNAQ-DENGYTALTWAARQGHKNVVLKLLELGANKMLQTKDGKTP 218

Query:   192 LALATK---PEVRILL 204
               +A K   PE+  LL
Sbjct:   219 SEVANKNKHPEIFSLL 234

GO:0007140 "male meiosis" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0034587 "piRNA metabolic process" evidence=ISS

GO:0043046 "DNA methylation involved in gamete generation" evidence=ISS

GO:0071546 "pi-body" evidence=ISS

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 35/91 (38%), Positives = 46/91 (50%)

Query:   129 SCLGD-FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
             +C+ D  + V  LV  G +IN Q D  GW  LH AA  G  DI  YL+  GA    + S+
Sbjct:    80 ACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query:   188 EETPLALATKPEVRILLGGE---PGVTINTA 215
              +TPL +A +  +  LL  E    GV I  A
Sbjct:   139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|I3LPC2 ANKRD11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 37/104 (35%), Positives = 54/104 (51%)

Query:   122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
             E +L  A+  GD   + EL+S+G D+N + D  GWTALH A  RG  D+   LL  GA+ 
Sbjct:   138 ETRLHRAAIRGDARRIKELISEGADVNVK-DFAGWTALHEACNRGYYDVAKQLLAAGAEV 196

Query:   182 SLLTSKEETPLALATK----PEVRILL--GGEPGVTINTADLPI 219
             +     ++TPL  A        V++LL  GG P  +    + P+
Sbjct:   197 NTKGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPL 240

GO:0060348 "bone development" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

MGI|MGI:1921318 Asz1 "ankyrin repeat, SAM and basic leucine zipper domain containing 1" [Mus musculus (taxid:10090)]

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 61/233 (26%), Positives = 108/233 (46%)

Query:   132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
             G  + V  LV+ G ++NAQ D NG+TAL WAA++G K+++  LL+ GA+K L T    TP
Sbjct:   160 GHTQVVALLVAHGAEVNAQ-DENGYTALTWAARQGHKNVILKLLELGANKMLQTKDGRTP 218

Query:   192 LALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV-NDYQVSNQNRTHQTNPV 250
               +A K    + +     +T+N  +  +     K E +   +  D   S++ + H  +P 
Sbjct:   219 SEIA-KRNKHLEIFNFLSLTLNPLEGKL-QQLTKEETICKLLATD---SDKEKDHIFSPY 273

Query:   251 TANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLKV 310
             TA  ++    H   + H T +   + D     ++T     +  +  A+   Q     LK 
Sbjct:   274 TAFGDLEIFLHGLGLEHMTDSLKEK-DITLRHLLTMKKDELTKNGIASKDQQKILAALKE 332

Query:   311 RIAQDMD----DDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLP 359
                ++++     +  ++E++    L +   LN  C  L I + Q I  I +LP
Sbjct:   333 LEVEEINFGKLPEVTKLEISGDEFLNFLLKLNKQCGHL-ITAVQNI--ITELP 382

GO:0004871 "signal transducer activity" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0007126 "meiosis" evidence=IEA

GO:0007140 "male meiosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007281 "germ cell development" evidence=NAS

GO:0007283 "spermatogenesis" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0034587 "piRNA metabolic process" evidence=IMP

GO:0043046 "DNA methylation involved in gamete generation" evidence=IMP

GO:0071546 "pi-body" evidence=IDA

UNIPROTKB|E1C390 DYSFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/67 (43%), Positives = 33/67 (49%)

Query:   125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
             L +A   G+ + V  LV  G DI+ Q D NGWT LH A   G  DI  YLL  GA     
Sbjct:    59 LHQAVLTGNLDCVKLLVKYGADIH-QRDENGWTPLHMACSDGHADIARYLLSLGASLEAT 117

Query:   185 TSKEETP 191
             T   E P
Sbjct:   118 TDDGEKP 124

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

UNIPROTKB|G3MY56 PPP1R27 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 32/80 (40%), Positives = 39/80 (48%)

Query:   125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
             L EA   G+ E V  LV  G DI+ Q D  GWT LH A   G  DI  YL+  GAD+   
Sbjct:    73 LHEAVLSGNLECVKLLVKYGADIH-QRDETGWTPLHIACSDGYPDIARYLISLGADREAA 131

Query:   185 TSKEETPLALATKPEVRILL 204
                 + P  L   PE + L+
Sbjct:   132 NDDGDLPSDLID-PEFKDLV 150

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-050208-136 gabpb2b "GA repeat binding protein, beta 2b" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 52/192 (27%), Positives = 88/192 (45%)

Query:    99 HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTA 158
             H ++A +     GVS   R K     L  A+  G    V  LV  G DINA+ DM   TA
Sbjct:    50 HYSTAEVLLRA-GVSRDARTKVDRTPLHMAAAEGHSSIVELLVKSGADINAK-DMLKMTA 107

Query:   159 LHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT-KPEVRILLGGEPGVTINTADL 217
             LHWA + G + +V  L+K+GAD   L+  ++TP  ++  +    ++L  + G+  N  ++
Sbjct:   108 LHWATEHGHRGVVELLVKYGADTHALSKFDKTPFNISVDRGNTDLMLLLQEGMQ-NQVNM 166

Query:   218 PIVPNYIKNEPLDPRVNDYQ--VSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQ 275
                P         P  +  Q  +S+    + ++ V +N    T +  S++   + ++  Q
Sbjct:   167 N--PERTILSSTSPATSSPQFIISSSGVVNLSDIVLSNAKSNTAASESVIAADSVDSAIQ 224

Query:   276 -LDGKSADVVTT 286
              L G+    V T
Sbjct:   225 HLVGEDGQRVIT 236

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	464
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
smart00248	30	smart00248, ANK, ankyrin repeats	9e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+ KG D+NA+ D +G T LH AA+ G  D+V  LLKHGAD +  
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 185 TSKEETPLALATK 197
                TPL LA K
Sbjct: 103 DKDGRTPLHLAAK 115

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           A+  G+ E V  L+  G D+NA+ D +G TALH AA+ G  +IV  LL+HGAD +L
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAK-DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA+ D +G T LH AAK G  +IV  LL+ GAD +  
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 185 TSKEETPLALATKPE----VRILL 204
                TPL LA +      V++LL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLL 93

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 8e-13
 Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G+ E V  L+ KG D+N     +  TALH AA+ G  +IV  LL+HGAD +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                T L LA +    E V++LL  E G  IN  D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLL--EHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
           G  E V  L+ KG+DIN   D +G TALH AA+ G  +++  LL
Sbjct: 12  GRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
             D +G T LH AA  G  ++V  LL++GAD +   +   TPL LA
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.9 bits (115), Expect = 6e-08
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +G T LH AA+ G  ++V  LL+ GAD
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 24/56 (42%), Positives = 29/56 (51%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
           L+  G       D NG T LH AAK G  ++V +LLK G D +L  S   T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
           L  A+  G+ + V  L+  G D+NA+ D +G T LH AAK G  ++V  LL
Sbjct: 77  LHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
           L+  GI INA++   G T LH+AA          L+  GAD + ++S   TPL+L 
Sbjct: 243 LLIAGISINARNR-YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 132 GDFEAVCELVSKGI--DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE 189
           G+ E    L+  G   D+N   D +G T LHWAA  G  DIV  LL+ GAD +   S   
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 190 TPLALATK 197
           T L  A K
Sbjct: 182 TALDPAAK 189

Length = 235

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +G T LH AA+ G  ++V  LL  GAD
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +G T LH AA+ G  ++V  LL+HGAD
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK-----DIVSYLLKHGADK 181
            A+  GD + V  L++ G D+NA+ D +G T LH AA  G       ++   LL+ GAD 
Sbjct: 79  SAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137

Query: 182 SLLTSKEE---TPLALA 195
            +   ++E   TPL  A
Sbjct: 138 DVNNLRDEDGNTPLHWA 154

Length = 235

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALA 195
           L+  G DINAQ  + G TALH AA R   D+  +L    G D     +  ++P  LA
Sbjct: 83  LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA 139

Length = 169

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
           G TALH AA  G+ ++V YLL+ G D +       T L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
           L+S G+ IN + D+ G+T LH+A      + V YLL  GA+ +L+    +TPL +A    
Sbjct: 178 LLSYGVPINIK-DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN 236

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAA--KRGQKDIVSYLLKHGADKSLLTSKEETPL 192
           E V  L+  G ++NA  D NG T L +A   K     IV YLL +GA+ ++  S  E  L
Sbjct: 87  EIVKLLLEYGANVNAP-DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145

Query: 193 ALATK 197
            L  +
Sbjct: 146 HLYLE 150

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 114 DMDRV--KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV 171
            +D V    L  +L + +  GD      L++ G D N + D +G T LH A   G   +V
Sbjct: 73  VIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVV 131

Query: 172 SYLLKHGADKSLLTSKEETPLALA 195
             LL+ GAD +LL    +TPL LA
Sbjct: 132 RVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
           D++ +  L+  G+D+NA+  + G TALH + K  +K  +  LL++GAD + L S + TPL
Sbjct: 247 DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPL 304

Query: 193 ALATK 197
           + A K
Sbjct: 305 SSAVK 309

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
           L+  G D+NA+ D+   T +H+AA+RG   +V+ LL +GAD +++   + + L  A   +
Sbjct: 164 LLEGGADVNAK-DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK 222

Query: 200 ----VRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQN 255
               ++ ++       IN  DL ++   I+NE L+  +  Y     +     N +   +N
Sbjct: 223 NIDTIKAIIDNRS--NINKNDLSLL-KAIRNEDLETSLLLY-----DAGFSVNSIDDCKN 274

Query: 256 VVTTSHHSIVNHSTTNTPAQLDGKSADV 283
             T  HH+    S +    +L  + ADV
Sbjct: 275 --TPLHHASQAPSLSRLVPKLLERGADV 300

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 20/117 (17%)

Query: 62  IRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYL 121
            R++ +V  L  F +    L  +  G     NG E+   N A    ++L V+       L
Sbjct: 485 TRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMA---SNLLTVASTGNAALL 541

Query: 122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           EE L+                   DI    D  G T LH AA +G +D V  LLKH 
Sbjct: 542 EELLK--------------AKLDPDIG---DSKGRTPLHIAASKGYEDCVLVLLKHA 581

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 17/176 (9%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
           + +  ++  GID+N + D    T LH+A K+G  + +  L ++GAD ++       P+ +
Sbjct: 105 DMIKTILDCGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163

Query: 195 ATKPE----VRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVN--DYQVSNQNRTHQTN 248
           A K      +++LL  E G   N      V +     PL       DY        H  +
Sbjct: 164 AIKHNFFDIIKLLL--EKGAYAN------VKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 249 PVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLD 304
            +   +N  T  H++I+ H+ +     ++  S +       + ++H+  N P  +D
Sbjct: 216 IMNKCKNGFTPLHNAII-HNRSAIELLINNASINDQDIDGSTPLHHAI-NPPCDID 269

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           +E +L +A   GD +AV EL+  G   +     +G T LH A    + DI+  L+  GAD
Sbjct: 68  IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD 127

Query: 181 KSLLTSKEETPLALA 195
             +  + + +PL LA
Sbjct: 128 PDIPNTDKFSPLHLA 142

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	464
KOG4412|consensus	226		99.94
KOG4412|consensus	226		99.92
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02874	434	ankyrin repeat protein; Provisional	99.89
PHA02791	284	ankyrin-like protein; Provisional	99.89
KOG0509|consensus	600		99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.86
KOG0509|consensus	600		99.86
PHA02946	446	ankyin-like protein; Provisional	99.85
PHA02874	434	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA02876	682	ankyrin repeat protein; Provisional	99.84
KOG0508|consensus	615		99.84
PHA02946	446	ankyin-like protein; Provisional	99.83
PHA03095	471	ankyrin-like protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.82
KOG0510|consensus	929		99.81
KOG0508|consensus	615		99.81
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.81
PHA02798	489	ankyrin-like protein; Provisional	99.8
KOG0514|consensus	452		99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02798	489	ankyrin-like protein; Provisional	99.79
KOG0510|consensus	929		99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02989	494	ankyrin repeat protein; Provisional	99.78
PHA02876	682	ankyrin repeat protein; Provisional	99.78
KOG0512|consensus	228		99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
PHA02795	437	ankyrin-like protein; Provisional	99.76
PHA02917	661	ankyrin-like protein; Provisional	99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.75
KOG4177|consensus	1143		99.75
PHA02989	494	ankyrin repeat protein; Provisional	99.74
KOG0502|consensus	296		99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
PHA02795	437	ankyrin-like protein; Provisional	99.72
KOG4177|consensus	1143		99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
KOG0195|consensus	448		99.7
PHA02743	166	Viral ankyrin protein; Provisional	99.7
PHA02736	154	Viral ankyrin protein; Provisional	99.68
KOG0502|consensus	296		99.67
PHA02741	169	hypothetical protein; Provisional	99.67
KOG0512|consensus	228		99.67
KOG0505|consensus	527		99.65
KOG0195|consensus	448		99.65
PHA02730	672	ankyrin-like protein; Provisional	99.65
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.64
KOG0507|consensus	854		99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
KOG0514|consensus	452		99.62
KOG4214|consensus	117		99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.56
PHA02730	672	ankyrin-like protein; Provisional	99.53
PHA02792	631	ankyrin-like protein; Provisional	99.52
KOG0505|consensus	527		99.51
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
PHA02792	631	ankyrin-like protein; Provisional	99.48
KOG0507|consensus	854		99.47
KOG3676|consensus	782		99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
KOG3676|consensus	782		99.4
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.4
KOG0515|consensus	752		99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.34
KOG1710|consensus	396		99.31
KOG4369|consensus	2131		99.29
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
KOG4369|consensus	2131		99.27
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
KOG4214|consensus	117		99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.16
KOG0515|consensus	752		99.03
KOG1710|consensus	396		98.98
KOG0783|consensus	1267		98.83
PF13606	30	Ank_3: Ankyrin repeat	98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.68
KOG0818|consensus	669		98.53
KOG0506|consensus	622		98.49
KOG0818|consensus	669		98.47
KOG0506|consensus	622		98.47
PF13606	30	Ank_3: Ankyrin repeat	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.43
KOG0783|consensus	1267		98.4
KOG0705|consensus	749		98.35
KOG0782|consensus	1004		98.34
KOG0522|consensus	560		98.26
KOG0511|consensus	516		98.22
KOG0705|consensus	749		98.1
KOG0782|consensus	1004		98.06
KOG0522|consensus	560		98.01
KOG0521|consensus	785		97.98
KOG2384|consensus	223		97.9
KOG0520|consensus	975		97.9
KOG0521|consensus	785		97.74
KOG2384|consensus	223		97.62
KOG0511|consensus	516		97.54
KOG2505|consensus	591		97.26
KOG3609|consensus	822		97.22
KOG0520|consensus	975		97.13
KOG3609|consensus	822		97.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.99
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.2
KOG2505|consensus	591		94.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.03

>KOG4412|consensus

Probab=99.94  E-value=1.6e-27  Score=217.02  Aligned_cols=165  Identities=25%  Similarity=0.241  Sum_probs=148.0

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHW  161 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH~  161 (464)
                      .+.+|+|||||||..|+.++|.+|+...+..++.+|..||||||.||..|+.++|+.|+.+ |+|+|+.+. .|.|||||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn-~G~T~LHy  112 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN-GGQTCLHY  112 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC-CCcceehh
Confidence            3459999999999999999999999877999999999999999999999999999999999 999999966 99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      |+..|..+|+++|+++||.++++|..|.||||-|+   +..++++|...+...+..+..|+||++++--.+|.++.-.|+
T Consensus       113 AagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHH
Confidence            99999999999999999999999999999999996   668888887666666778889999999996667888888888


Q ss_pred             hCCCCCCCCC
Q psy6441         239 SNQNRTHQTN  248 (464)
Q Consensus       239 sn~~~~~~~~  248 (464)
                      +.++......
T Consensus       193 ~~gAd~~~ed  202 (226)
T KOG4412|consen  193 RAGADTDRED  202 (226)
T ss_pred             Hhccceeecc
Confidence            7775554443

>KOG4412|consensus

Probab=99.92  E-value=1e-25  Score=205.31  Aligned_cols=174  Identities=22%  Similarity=0.159  Sum_probs=147.3

Q ss_pred             hhccchhHHHHhhhHHHHHHHh---------cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhc
Q psy6441          61 IIRKDKDVARLTMFQEIELVLS---------QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCL  131 (464)
Q Consensus        61 ~~~~~~~~a~l~~~~ei~~ll~---------~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~  131 (464)
                      ..|+.+|.+...+..++..++.         .|..||||||+||..|+.++|+.|+...|+++|..+..|.|+||||+..
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK  116 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC
Confidence            5677788888777777776665         2468999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhh-c--cHHHHHHH-hCC
Q psy6441         132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA-T--KPEVRILL-GGE  207 (464)
Q Consensus       132 G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A-~--~~~i~~LL-~~~  207 (464)
                      |..+++++|+++|+.++.+ |..|.||||-|+.-|.++++++|+..||.+|.+|..|+||||+| |  +.++..+| ..+
T Consensus       117 ~r~eIaqlLle~ga~i~~k-D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALIRIK-DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             ChhhHHHHHHhcCCCCccc-ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            9999999999999999999 45999999999999999999999999999999999999999999 4  56677666 344


Q ss_pred             CCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         208 PGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       208 ~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      ++.+. .+..+ |++..+...+..++.+.+
T Consensus       196 Ad~~~-edke~-t~~~~a~~~l~~alk~~~  223 (226)
T KOG4412|consen  196 ADTDR-EDKEG-TALRIACNELLEALKEQM  223 (226)
T ss_pred             cceee-ccccC-chHHHHHHHHHHHHHHHh
Confidence            33333 33344 888777776666655543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=203.32  Aligned_cols=204  Identities=17%  Similarity=0.063  Sum_probs=123.0

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCch-hhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcC
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPN-TIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENT   98 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~-~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G   98 (464)
                      ++..+.++|++|+.....+..+.+.......+ ....++.+.+...+..++..++..        +..|+||||+|+..|
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            45667888888888888776666655432211 112455566665555555444432        346677777777777


Q ss_pred             ChhhhhcchhhcCCCcccccchhh-hHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy6441          99 HLNSARLPFSVLGVSDMDRVKYLE-EQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH  177 (464)
Q Consensus        99 ~~~iVk~LL~~~ga~~~~~d~~G~-TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~  177 (464)
                      +.+++++|++. |++++.++..|+ ||||+|+..|+.+++++|+++|++..  +...|+||||+|+.+|+.+++++||++
T Consensus       106 ~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        106 NMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             CHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            77777777776 677766666664 67777777777777777777654331  112466777777777777777777777


Q ss_pred             CCCCCCCCCCCCch-hHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         178 GADKSLLTSKEETP-LALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       178 GAdin~~D~~G~TP-Lh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      ||+++.+|..|.|| ||+|+   +.+++++|... +++........++      -.+.+++++|+++.
T Consensus       183 gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~~~------l~~~e~~~~ll~~~  243 (284)
T PHA02791        183 MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLENVL------LDDAEIAKMIIEKH  243 (284)
T ss_pred             CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccCcc------CCCHHHHHHHHHhh
Confidence            77777777777665 77774   45666666322 2222111112222      25666666666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=213.56  Aligned_cols=215  Identities=18%  Similarity=0.076  Sum_probs=173.3

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcCCch---hhhccchhHHHHhhhHHHHHHHh-------------------------
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRKLPN---TIIRKDKDVARLTMFQEIELVLS-------------------------   82 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~l~~---~~~~~~~~~a~l~~~~ei~~ll~-------------------------   82 (464)
                      .+.++++.|++.+..+.++.+...+.-.+   ....+..+.|...+..++..++.                         
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            45789999999988887777776543222   22234455555444444333332                         


Q ss_pred             ------cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCC
Q psy6441          83 ------QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        83 ------~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                            .+..|.||||+|+..|+.++|++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|+
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-~g~  191 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-NGE  191 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCC
Confidence                  235799999999999999999999999 999999999999999999999999999999999999999854 999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc--cHHHHHHHhCCCCCcccCCCCCCCcccccCCCC-cHHH
Q psy6441         157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT--KPEVRILLGGEPGVTINTADLPIVPNYIKNEPL-DPRV  233 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~--~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~-h~a~  233 (464)
                      ||||+|+..|+.+++++|+++|++++.++..|+||||+|+  ...++.+|..+.+. ...+..|.||++.|+... +..+
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~i-n~~d~~G~TpLh~A~~~~~~~~i  270 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASI-NDQDIDGSTPLHHAINPPCDIDI  270 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCC-CCcCCCCCCHHHHHHhcCCcHHH
Confidence            9999999999999999999999999999999999999996  34556666554444 445677899999998754 7889


Q ss_pred             HHHHHhCCCCCCCCC
Q psy6441         234 NDYQVSNQNRTHQTN  248 (464)
Q Consensus       234 ~~~l~sn~~~~~~~~  248 (464)
                      .++|++++.....+.
T Consensus       271 v~~Ll~~gad~n~~d  285 (434)
T PHA02874        271 IDILLYHKADISIKD  285 (434)
T ss_pred             HHHHHHCcCCCCCCC
Confidence            999998877766655

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=202.56  Aligned_cols=181  Identities=14%  Similarity=0.064  Sum_probs=104.2

Q ss_pred             hccchhHHHHhhhHHHHHHHhcC------CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHH
Q psy6441          62 IRKDKDVARLTMFQEIELVLSQM------PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFE  135 (464)
Q Consensus        62 ~~~~~~~a~l~~~~ei~~ll~~~------~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~e  135 (464)
                      ..+..+.+...+..++..++...      .+|.||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+..|+.+
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~-Gadvn~~d~~G~TpLh~Aa~~g~~e  108 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS-GMDDSQFDDKGNTALYYAVDSGNMQ  108 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            44555555555554444333221      2456666666666666666666666 6666666666666666666666666


Q ss_pred             HHHHHHHCCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCchhHhhc---cHHHHHHHhCCCCC
Q psy6441         136 AVCELVSKGIDINAQHDMNGW-TALHWAAKRGQKDIVSYLLKHGADKSLLT-SKEETPLALAT---KPEVRILLGGEPGV  210 (464)
Q Consensus       136 iVk~LL~~Gadvn~~dd~~G~-TpLH~Aa~~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A~---~~~i~~LL~~~~~~  210 (464)
                      ++++|+++|++++.++. .|| ||||+|+..|+.+++++|+++|++.  .| ..|.||||+|+   +.+++++|...+..
T Consensus       109 ivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd  185 (284)
T PHA02791        109 TVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS  185 (284)
T ss_pred             HHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCC
Confidence            66666666666666543 554 6666666666666666666665432  12 23566666664   34555555332222


Q ss_pred             cccCCCCCCCc-ccccCCCCcHHHHHHHHhCCCCCCC
Q psy6441         211 TINTADLPIVP-NYIKNEPLDPRVNDYQVSNQNRTHQ  246 (464)
Q Consensus       211 ~~~~~~~~~tp-l~laa~~~h~a~~~~l~sn~~~~~~  246 (464)
                      ....+..+.|| ++.|+..++.+++++|++.+.....
T Consensus       186 ~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        186 TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Confidence            22233344444 6666666666666666665554433

>KOG0509|consensus

Probab=99.88  E-value=7.7e-23  Score=215.63  Aligned_cols=174  Identities=24%  Similarity=0.193  Sum_probs=147.3

Q ss_pred             HHhcCCCCCcchhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          80 VLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        80 ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      +...|.+|.|+|||||.+++++++++|+++ |+++|... ..+.|||||||++|+..+|++|+++|||++.+| .+|.||
T Consensus        71 v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D-~~G~~~  148 (600)
T KOG0509|consen   71 VNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKD-KQGLTP  148 (600)
T ss_pred             CCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceec-CCCCcH
Confidence            334467999999999999999999999999 99999998 678999999999999999999999999999995 499999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccH----HHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHH
Q psy6441         159 LHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKP----EVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVN  234 (464)
Q Consensus       159 LH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~----~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~  234 (464)
                      ||.|++.|+.-+|-+||.+|+|++.+|.+|+||||||+..    .+..+|..+......++..+.||+|.|.-.+...+.
T Consensus       149 lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v  228 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAV  228 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceE
Confidence            9999999999999999999999999999999999999732    377777777777777778899999999888888776


Q ss_pred             HHHHhCCCCCCCCCCCCCCCCc
Q psy6441         235 DYQVSNQNRTHQTNPVTANQNV  256 (464)
Q Consensus       235 ~~l~sn~~~~~~~~p~~~~~p~  256 (464)
                      ..+.+.+..-..+. ..+.+|.
T Consensus       229 ~Ll~~g~~~~d~~~-~~g~tp~  249 (600)
T KOG0509|consen  229 KLLLEGGADLDKTN-TNGKTPF  249 (600)
T ss_pred             ehhhhcCCcccccc-cCCCCHH
Confidence            64444444444443 3344443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4e-22  Score=211.26  Aligned_cols=219  Identities=21%  Similarity=0.185  Sum_probs=183.7

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchh---hhccchhH-----HHHhhhHHHHHHHhc--------CCCCCcch
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNT---IIRKDKDV-----ARLTMFQEIELVLSQ--------MPDGHGSI   91 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~---~~~~~~~~-----a~l~~~~ei~~ll~~--------~~~g~TpL   91 (464)
                      ....+.++++.|++....+.++.+...+.-++.   ......+.     +...+..++..++.+        +..|.|||
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL  110 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL  110 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchh
Confidence            445678999999999999988888876643332   23355676     666666666655543        25689999


Q ss_pred             hhhh--hcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcC--CHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          92 VNGM--ENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG--DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        92 h~Aa--~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      |+|+  ..|+.+++++|++. |++++..+..|.||||+|+..|  +.+++++|+++|++++.++. .|+||||+|+..|+
T Consensus       111 ~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~  188 (480)
T PHA03100        111 LYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGN  188 (480)
T ss_pred             hHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCC
Confidence            9999  99999999999999 9999999999999999999999  99999999999999999965 99999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCC------CchhHhhc---c--HHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         168 KDIVSYLLKHGADKSLLTSKE------ETPLALAT---K--PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       168 ~eiv~lLL~~GAdin~~D~~G------~TPLh~A~---~--~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      .+++++|+++|++++..+..|      .||||+|+   +  .+++++|...+......+..|.||++.|+..++..+.++
T Consensus       189 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        189 IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999      89999996   4  677777755433334556788999999999999999999


Q ss_pred             HHhCCCCCCCCC
Q psy6441         237 QVSNQNRTHQTN  248 (464)
Q Consensus       237 l~sn~~~~~~~~  248 (464)
                      |+..++......
T Consensus       269 Ll~~gad~n~~d  280 (480)
T PHA03100        269 LLDLGANPNLVN  280 (480)
T ss_pred             HHHcCCCCCccC
Confidence            998887555444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=6e-22  Score=206.52  Aligned_cols=211  Identities=15%  Similarity=0.074  Sum_probs=159.4

Q ss_pred             HhHHHHHHHhcCCCCHHHHHHhcCCc---hhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCChh
Q psy6441          33 YSLLNICCKELNIDSPQTILKIRKLP---NTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHLN  101 (464)
Q Consensus        33 ~~lL~i~c~~~~i~~~~~l~~~~~l~---~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~~  101 (464)
                      +..|+.|++.+.++.++.+.....-+   .....++.+.|...+..++...+..        +.++.||||.|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            34566666666666555555543222   1123455566655555444444332        256889999999999999


Q ss_pred             hhhcchhhcCCCc-ccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy6441         102 SARLPFSVLGVSD-MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD  180 (464)
Q Consensus       102 iVk~LL~~~ga~~-~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd  180 (464)
                      ++++|++. |... +..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++
T Consensus        83 ~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         83 AVEELLDL-GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHc-CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999998 6655 34567899999999999999999999999999999854 899999999999999999999999999


Q ss_pred             CCCCCCCCCchhHhhc---cHHHHHHHh-CCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCC
Q psy6441         181 KSLLTSKEETPLALAT---KPEVRILLG-GEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTH  245 (464)
Q Consensus       181 in~~D~~G~TPLh~A~---~~~i~~LL~-~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~  245 (464)
                      ++.+|..|+||||+|+   +.+++++|. .+.+.+........||++.|...++..+.++|++++....
T Consensus       161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            9999999999999996   557777764 4444444444445688888999999999999998876654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=8.8e-22  Score=209.62  Aligned_cols=139  Identities=21%  Similarity=0.130  Sum_probs=97.1

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc-
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR-  165 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~-  165 (464)
                      |.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|++.|++++.++. .|+||||+|+.. 
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~-~g~TpLh~A~~~~  245 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK-CGNTPLHISVGYC  245 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhc
Confidence            77777777777777777777777 777777777777777777777777777777777777777743 777777777764 


Q ss_pred             CCHHHHHHHHHCCCCCCCCCC-CCCchhHhhc-cHHHHHHHhCCCCCcccCCCCCCCcccccCC
Q psy6441         166 GQKDIVSYLLKHGADKSLLTS-KEETPLALAT-KPEVRILLGGEPGVTINTADLPIVPNYIKNE  227 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~-~G~TPLh~A~-~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~  227 (464)
                      ++.+++++|+++|++++.++. .|+||||+|+ +.+++++|...+...+..+..|.||++.|..
T Consensus       246 ~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        246 KDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            577777777777777777765 6777777775 4456666543333223445566677766654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=204.36  Aligned_cols=163  Identities=22%  Similarity=0.175  Sum_probs=145.0

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..|.||||+|+..|+.+++++|++. |++++..+..+.||||+|+..|+.+++++|++.|++++...+..|+||||+|+.
T Consensus        33 ~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         33 YDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            4799999999999999999999999 999999989999999999999999999999999988765445589999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      .|+.+++++|+++|++++.++..|.||||+|+   +.+++++|...+......+..|.||+++|+..++.++.++|+.++
T Consensus       112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            99999999999999999999999999999996   467777775544444556778999999999999999999999887


Q ss_pred             CCCCCCC
Q psy6441         242 NRTHQTN  248 (464)
Q Consensus       242 ~~~~~~~  248 (464)
                      .......
T Consensus       192 a~~n~~~  198 (413)
T PHA02875        192 ANIDYFG  198 (413)
T ss_pred             CCCCcCC
Confidence            7665544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2e-21  Score=206.95  Aligned_cols=214  Identities=17%  Similarity=0.099  Sum_probs=161.5

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHH-hc-----CCCCCcchhhhhhcCChh
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVL-SQ-----MPDGHGSIVNGMENTHLN  101 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll-~~-----~~~g~TpLh~Aa~~G~~~  101 (464)
                      .+.++||.|+.....+.++.+...+.   ..+..+.++.+.|...+..+....+ ..     ...+.++|+.|+..|+.+
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            45677888888888877777766542   2233445666666655443332222 11     134566777777666644


Q ss_pred             ---------------------------------hhhcchhhcCCCcccccch-hhhHHHHHHhcCCHHHHHHHHHCCCCc
Q psy6441         102 ---------------------------------SARLPFSVLGVSDMDRVKY-LEEQLREASCLGDFEAVCELVSKGIDI  147 (464)
Q Consensus       102 ---------------------------------iVk~LL~~~ga~~~~~d~~-G~TpLh~Aa~~G~~eiVk~LL~~Gadv  147 (464)
                                                       ++++|++. |++++..+.. |+||||+|+..|+.+++++|+++|+++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY-GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc-CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                             55566666 8899999988 999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc----cHHHHHHHh-CCCCCcccCCCCCCCcc
Q psy6441         148 NAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLG-GEPGVTINTADLPIVPN  222 (464)
Q Consensus       148 n~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~----~~~i~~LL~-~~~~~~~~~~~~~~tpl  222 (464)
                      +.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+    +.+++++|. .+.+.+......+.||+
T Consensus       195 n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL  273 (477)
T PHA02878        195 NIPDK-TNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence            99955 9999999999999999999999999999999999999999996    347777774 34444444444789999


Q ss_pred             cccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         223 YIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       223 ~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      +.|  ..+..+..+|+..++......
T Consensus       274 h~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        274 HSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             HHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            999  456778889998877665554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=205.52  Aligned_cols=212  Identities=20%  Similarity=0.106  Sum_probs=176.7

Q ss_pred             CCChHhHHHH-----HHHhcCCCCHHHHHHhcCC---chhhhccchhHHH--HhhhHHHHHHHhc--------CCCCCcc
Q psy6441          29 ELTYYSLLNI-----CCKELNIDSPQTILKIRKL---PNTIIRKDKDVAR--LTMFQEIELVLSQ--------MPDGHGS   90 (464)
Q Consensus        29 ~l~~~~lL~i-----~c~~~~i~~~~~l~~~~~l---~~~~~~~~~~~a~--l~~~~ei~~ll~~--------~~~g~Tp   90 (464)
                      ...+.++++.     |+.....+.++.+...+.-   .+....++.+.|.  ..+..++...+.+        +..|.||
T Consensus        65 ~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~  144 (480)
T PHA03100         65 TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL  144 (480)
T ss_pred             cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcH
Confidence            4456789999     9888888877777665432   2333456677777  6555555544433        3579999


Q ss_pred             hhhhhhcC--ChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCC------CcHHHHH
Q psy6441          91 IVNGMENT--HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNG------WTALHWA  162 (464)
Q Consensus        91 Lh~Aa~~G--~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G------~TpLH~A  162 (464)
                      ||+|+..|  +.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++..+. .|      .||||+|
T Consensus       145 L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~~t~l~~a  222 (480)
T PHA03100        145 LHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDI-ETLLFTIFETPLHIA  222 (480)
T ss_pred             HHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCC-CCCcHHHHHhHHHHH
Confidence            99999999  99999999999 999999999999999999999999999999999999999855 77      8999999


Q ss_pred             HHcCC--HHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         163 AKRGQ--KDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       163 a~~G~--~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      +..|+  .+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..|.||+++|....+..+...+
T Consensus       223 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        223 ACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             HHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHH
Confidence            99999  99999999999999999999999999996   46788877544443355677889999999999999999999


Q ss_pred             HhCCC
Q psy6441         238 VSNQN  242 (464)
Q Consensus       238 ~sn~~  242 (464)
                      ++.+.
T Consensus       303 l~~g~  307 (480)
T PHA03100        303 LNNGP  307 (480)
T ss_pred             HhcCC
Confidence            96654

>KOG0509|consensus

Probab=99.86  E-value=6.5e-22  Score=208.68  Aligned_cols=190  Identities=23%  Similarity=0.180  Sum_probs=156.2

Q ss_pred             HHHHHhcCCCCHHHHHHh-c---CCchhhhccchhHHHHhhhHHHHHHHhcC---------CCCCcchhhhhhcCChhhh
Q psy6441          37 NICCKELNIDSPQTILKI-R---KLPNTIIRKDKDVARLTMFQEIELVLSQM---------PDGHGSIVNGMENTHLNSA  103 (464)
Q Consensus        37 ~i~c~~~~i~~~~~l~~~-~---~l~~~~~~~~~~~a~l~~~~ei~~ll~~~---------~~g~TpLh~Aa~~G~~~iV  103 (464)
                      ..+++.+.++.++.++.. .   +-++.......|-|+..+..++...+...         .-+.||||||+++|++.+|
T Consensus        49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHH
Confidence            346667777666666554 2   23444555678888888887777665542         4568999999999999999


Q ss_pred             hcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy6441         104 RLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL  183 (464)
Q Consensus       104 k~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~  183 (464)
                      +.|+++ |++++.+|..|.+|||.||+.|+.-+|-+||.+|+++|.+|. +|+||||||+.+|+...++.||..|+.++.
T Consensus       129 ~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~-~grTpLmwAaykg~~~~v~~LL~f~a~~~~  206 (600)
T KOG0509|consen  129 DLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN-NGRTPLMWAAYKGFALFVRRLLKFGASLLL  206 (600)
T ss_pred             HHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC-CCCCHHHHHHHhcccHHHHHHHHhcccccc
Confidence            999999 999999999999999999999999999999999999999965 999999999999999889999999999999


Q ss_pred             CC-CCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCC
Q psy6441         184 LT-SKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEP  228 (464)
Q Consensus       184 ~D-~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~  228 (464)
                      +| ..|.||||||+   +..++.+|..++......+..|.||..+|...
T Consensus       207 ~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  207 TDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            98 89999999995   44555566555555455666688998888554

>PHA02946 ankyin-like protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=202.89  Aligned_cols=214  Identities=17%  Similarity=0.116  Sum_probs=164.7

Q ss_pred             hcccccCCChHhHHHHHHHhcCCCCHHHHHHhcCC---chhhhccchhHHHHhhh--HH-HHHHHh--------cCCCCC
Q psy6441          23 ELNRLTELTYYSLLNICCKELNIDSPQTILKIRKL---PNTIIRKDKDVARLTMF--QE-IELVLS--------QMPDGH   88 (464)
Q Consensus        23 ei~rl~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l---~~~~~~~~~~~a~l~~~--~e-i~~ll~--------~~~~g~   88 (464)
                      +++. ++..+.++||+|+.....+.++.+.....-   .+....++.+.+.....  .+ +..++.        .+..|.
T Consensus        64 dvn~-~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         64 SPNE-TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            3444 556688999999999998877777765432   23344566776554321  22 333332        246789


Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcC--CHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcC
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG--DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      |||| |+..|+.++++.|++. |++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|. +|+||||+|+..|
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~-~G~TpLH~Aa~~~  219 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH-DGNTPLHIVCSKT  219 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcC
Confidence            9997 6667999999999998 9999999999999999988755  56899999999999999954 9999999999986


Q ss_pred             --CHHHHHHHHHCCCCCCCCCCCCCchhHhhcc----HHHHHHHhCCCCCc---------------------ccCCCCCC
Q psy6441         167 --QKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPGVT---------------------INTADLPI  219 (464)
Q Consensus       167 --~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~----~~i~~LL~~~~~~~---------------------~~~~~~~~  219 (464)
                        +.+++++|+. |++++.+|..|+||||+|+.    .+++++|...+...                     ......+.
T Consensus       220 ~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~  298 (446)
T PHA02946        220 VKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDS  298 (446)
T ss_pred             CCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCC
Confidence              7899999985 99999999999999999973    36776664443211                     11123467


Q ss_pred             CcccccCCCCcHHHHHHHHhCC
Q psy6441         220 VPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       220 tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      ||+++|+..++..++++|++++
T Consensus       299 TpLh~Aa~~g~~eivk~Ll~~~  320 (446)
T PHA02946        299 TDFKMAVEVGSIRCVKYLLDND  320 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1e-20  Score=199.01  Aligned_cols=203  Identities=19%  Similarity=0.154  Sum_probs=139.6

Q ss_pred             hHHHHHHHhcCCCCHHHHHHhcC----CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCChh
Q psy6441          34 SLLNICCKELNIDSPQTILKIRK----LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHLN  101 (464)
Q Consensus        34 ~lL~i~c~~~~i~~~~~l~~~~~----l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~~  101 (464)
                      ..+..|+..+.++.++.+.+...    .......++.+.|...+..++...+..        +..|.||||.|+..|+.+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            35677888888877766665332    122233456666666666655544433        245678888888888888


Q ss_pred             hhhcchhh----------------------cCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHH
Q psy6441         102 SARLPFSV----------------------LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTAL  159 (464)
Q Consensus       102 iVk~LL~~----------------------~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpL  159 (464)
                      ++++|++.                      .|++++.++..|.||||+|+..|+.+++++|+++|++++.++. .|+|||
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpL  161 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPI  161 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHH
Confidence            88888765                      1344566777788888888888888888888888888887754 788888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         160 HWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       160 H~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      |+|+..|+.+++++|+++|++++..|..|+||||+|+   +.+++++|...+......+..+.||++.|....+. ....
T Consensus       162 h~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~i~~  240 (434)
T PHA02874        162 HIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIEL  240 (434)
T ss_pred             HHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-HHHH
Confidence            8888888888888888888888888888888888885   45677766444433344555677888877765543 3334


Q ss_pred             HH
Q psy6441         237 QV  238 (464)
Q Consensus       237 l~  238 (464)
                      +.
T Consensus       241 Ll  242 (434)
T PHA02874        241 LI  242 (434)
T ss_pred             HH
Confidence            44

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=197.96  Aligned_cols=224  Identities=15%  Similarity=0.047  Sum_probs=170.7

Q ss_pred             cCCChHhHHHHHHHhc---CCCCHHHHHHhcC---CchhhhccchhHHHHhh-hHHHHHHHhc--------CCCCCcchh
Q psy6441          28 TELTYYSLLNICCKEL---NIDSPQTILKIRK---LPNTIIRKDKDVARLTM-FQEIELVLSQ--------MPDGHGSIV   92 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~---~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~-~~ei~~ll~~--------~~~g~TpLh   92 (464)
                      .+-.+.++++.++...   ..+.++.+...+.   .....+.++.+.+...+ ..++..++.+        +..|.||||
T Consensus        43 ~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh  122 (471)
T PHA03095         43 RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLH  122 (471)
T ss_pred             CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3445688999998887   5554555554432   22334556777777766 4555554433        357899999


Q ss_pred             hhh--hcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcC--CHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc--C
Q psy6441          93 NGM--ENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG--DFEAVCELVSKGIDINAQHDMNGWTALHWAAKR--G  166 (464)
Q Consensus        93 ~Aa--~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~--G  166 (464)
                      +|+  ..++.+++++|++. |++++..|..|.||||+|+..+  +.+++++|+++|++++.. +..|+||||+|+..  +
T Consensus       123 ~a~~~~~~~~~iv~~Ll~~-gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        123 VYLSGFNINPKVIRLLLRK-GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             HHhhCCcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCC
Confidence            999  56788999999998 9999999999999999988766  678999999999999988 45899999999875  6


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCchhHhhcc-----HHHHHHH-hCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         167 QKDIVSYLLKHGADKSLLTSKEETPLALATK-----PEVRILL-GGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       167 ~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~-----~~i~~LL-~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      +.+++++|+++|++++.+|..|+||||+|+.     ..++++| ..+.+. +..+..|.||+++|+..++..+..+|+..
T Consensus       201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~  279 (471)
T PHA03095        201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIAL  279 (471)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            7899999999999999999999999999973     2344444 333333 44557889999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCC
Q psy6441         241 QNRTHQTNPVTANQN  255 (464)
Q Consensus       241 ~~~~~~~~p~~~~~p  255 (464)
                      ++.+.... ..+.+|
T Consensus       280 gad~n~~~-~~g~tp  293 (471)
T PHA03095        280 GADINAVS-SDGNTP  293 (471)
T ss_pred             CCCCcccC-CCCCCH
Confidence            87766555 334444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=9.4e-21  Score=181.09  Aligned_cols=142  Identities=11%  Similarity=0.005  Sum_probs=91.3

Q ss_pred             cCCCCCcchhhhhhc--CChhhhhcchhhcCCCccccc-chhhhHHHHHHhc---CCHHHHHHHHHCCCCcccccCCCCC
Q psy6441          83 QMPDGHGSIVNGMEN--THLNSARLPFSVLGVSDMDRV-KYLEEQLREASCL---GDFEAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~--G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                      .+..|.||||+|+..  |+.+++++|++. |++++.++ ..|+||||+|+..   ++.+++++|+++|+++|.++. .|+
T Consensus        47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-~G~  124 (209)
T PHA02859         47 CNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-DGK  124 (209)
T ss_pred             cCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-CCC
Confidence            345677777777664  367777777777 77777775 4677777776643   357777777777777777744 777


Q ss_pred             cHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCchhHhh-c---cHHHHHHHhCCCCCcccCCCCCCCcccccC
Q psy6441         157 TALHWAAK--RGQKDIVSYLLKHGADKSLLTSKEETPLALA-T---KPEVRILLGGEPGVTINTADLPIVPNYIKN  226 (464)
Q Consensus       157 TpLH~Aa~--~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A-~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa  226 (464)
                      ||||+|+.  .++.+++++|+++|++++.+|..|.||||.+ +   +.+++++|...+......+..+.||+++|.
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            77777765  3567777777777777777777777777743 2   345666664322222334445556555544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=9.9e-21  Score=180.94  Aligned_cols=181  Identities=12%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             cCCCCCchhhhcccccCCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhh--hHHHH-HHHhcC-----
Q psy6441          13 QDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTM--FQEIE-LVLSQM-----   84 (464)
Q Consensus        13 n~~e~d~ievei~rl~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~--~~ei~-~ll~~~-----   84 (464)
                      +++..||++.=-.     ++.++++.++....+..++.+.......+....++.+.+....  ..++. .++...     
T Consensus         7 ~~~~~~~~~~~~~-----~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~   81 (209)
T PHA02859          7 EYDYNDFTDYLFY-----RYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF   81 (209)
T ss_pred             ccccchhHHHHhh-----ccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc
Confidence            4566777774433     3688999999999998888777666666666778888776532  33433 333321     


Q ss_pred             ---CCCCcchhhhhhc---CChhhhhcchhhcCCCcccccchhhhHHHHHHh--cCCHHHHHHHHHCCCCcccccCCCCC
Q psy6441          85 ---PDGHGSIVNGMEN---THLNSARLPFSVLGVSDMDRVKYLEEQLREASC--LGDFEAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        85 ---~~g~TpLh~Aa~~---G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~--~G~~eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                         ..|.||||+|+..   ++.+++++|++. |++++.+|..|.||||+|+.  .++.+++++|++.|++++.+| ..|.
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d-~~g~  159 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD-FDNN  159 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc-CCCC
Confidence               3689999998763   579999999998 99999999999999999876  468999999999999999995 4999


Q ss_pred             cHHHH-HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHH
Q psy6441         157 TALHW-AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEV  200 (464)
Q Consensus       157 TpLH~-Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i  200 (464)
                      ||||. |+..++.+++++|+++|++++.+|..|+||||+|...++
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhhh
Confidence            99995 667889999999999999999999999999999976543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=207.46  Aligned_cols=169  Identities=20%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             CCCCcchhhhhhcC-ChhhhhcchhhcCCCcccccchhhhHHHHHHhc-CCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          85 PDGHGSIVNGMENT-HLNSARLPFSVLGVSDMDRVKYLEEQLREASCL-GDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G-~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~-G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+|.||||+|+..| ..++++.|+.. |++++..|..|+||||+|+.. ++.+++++|++.|+++|.++ ..|+||||+|
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d-~~G~TpLh~A  382 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD-YCDKTPIHYA  382 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCC-CCCCCHHHHH
Confidence            34555555555555 34555555555 555555555555566555553 34566667777777777774 3777777777


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc----HHHHHHHhCCCCCcccCCCCCCCcccccCCCC-cHHHHHHH
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPGVTINTADLPIVPNYIKNEPL-DPRVNDYQ  237 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~----~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~-h~a~~~~l  237 (464)
                      +..|+.+++++|+++|++++..+..|.||||+|+.    ..++++|...+...+..+..|.||+++|+... +..+.++|
T Consensus       383 a~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lL  462 (682)
T PHA02876        383 AVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML  462 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHH
Confidence            77778888888888888877777777788887741    24455554333333455667888888887654 67888888


Q ss_pred             HhCCCCCCCCCCCCCCCCc
Q psy6441         238 VSNQNRTHQTNPVTANQNV  256 (464)
Q Consensus       238 ~sn~~~~~~~~p~~~~~p~  256 (464)
                      ++.+....... ..+.+|.
T Consensus       463 l~~Gad~n~~d-~~g~tpl  480 (682)
T PHA02876        463 LDNGADVNAIN-IQNQYPL  480 (682)
T ss_pred             HHCCCCCCCCC-CCCCCHH
Confidence            88877666555 4444443

>KOG0508|consensus

Probab=99.84  E-value=2.1e-21  Score=198.06  Aligned_cols=152  Identities=24%  Similarity=0.280  Sum_probs=139.9

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      -+|.+||..|+..||+++|+.|+.+ |+++|.......|||..||..|+.++|++|+++|+|++..|. .|.|.||+||.
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~y  159 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACY  159 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeec
Confidence            4788999999999999999999999 899999999999999999999999999999999999999954 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +||.+|+++|++.|||+|.++..|+|+||.|+   +-+|+++|...+.. ...+..|.||+..|+..+|..++.+|.+
T Consensus       160 kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK-IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce-eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999997   77899998554444 4445559999999999999999999885

>PHA02946 ankyin-like protein; Provisional

Probab=99.83  E-value=2e-20  Score=198.17  Aligned_cols=153  Identities=13%  Similarity=0.041  Sum_probs=96.1

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcC--CHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG--DFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      +.+|.||||+|+..|+.++|++|+++ |++++.+|..|+||||+|+..+  ..+++++|+++|++++...+..|+|||| 
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            45677777777777777777777776 7777777777777777776654  3566777777777777533446777775 


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc-----cHHHHHHHhCCCCCcccCCCCCCCcccccCCCC--cHHHH
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT-----KPEVRILLGGEPGVTINTADLPIVPNYIKNEPL--DPRVN  234 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~-----~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~--h~a~~  234 (464)
                      ||..|+.+++++|+++|++++.+|..|+||||+|+     +.+++++|...+......+..|.||+|+|+..+  +..+.
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv  226 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDII  226 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHH
Confidence            55556666777777777777766767777776663     124555553322222334455666666666543  45555


Q ss_pred             HHHH
Q psy6441         235 DYQV  238 (464)
Q Consensus       235 ~~l~  238 (464)
                      ..+.
T Consensus       227 ~lLl  230 (446)
T PHA02946        227 NLLL  230 (446)
T ss_pred             HHHH
Confidence            5554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.83  E-value=5.6e-20  Score=194.24  Aligned_cols=216  Identities=17%  Similarity=0.099  Sum_probs=169.2

Q ss_pred             hcccccCCChHhHHHHHHHhcC-CCCHHHHHHhcC---CchhhhccchhHHHHh--hhHHHHHHH-hc-------CCCCC
Q psy6441          23 ELNRLTELTYYSLLNICCKELN-IDSPQTILKIRK---LPNTIIRKDKDVARLT--MFQEIELVL-SQ-------MPDGH   88 (464)
Q Consensus        23 ei~rl~~l~~~~lL~i~c~~~~-i~~~~~l~~~~~---l~~~~~~~~~~~a~l~--~~~ei~~ll-~~-------~~~g~   88 (464)
                      +++. .+..+.+++|+|+.... .+.++.+...+.   ..+....+..+.+...  ...++..++ ..       +..|.
T Consensus        75 din~-~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~  153 (471)
T PHA03095         75 DVNA-PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM  153 (471)
T ss_pred             CCCC-CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            4444 45578999999999984 665666655443   2333445667777632  223333333 22       36899


Q ss_pred             cchhhhhhcC--ChhhhhcchhhcCCCcccccchhhhHHHHHHhc--CCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          89 GSIVNGMENT--HLNSARLPFSVLGVSDMDRVKYLEEQLREASCL--GDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        89 TpLh~Aa~~G--~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~--G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ||||+|+..+  +.++++.|++. |++++..+..|+||||+|+..  ++.+++++|++.|++++.+|. .|+||||+|+.
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~-g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~-~g~tpLh~Aa~  231 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM-LGNTPLHSMAT  231 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHh
Confidence            9999998866  67899999999 999999999999999999875  788999999999999999955 99999999999


Q ss_pred             cCCH--HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         165 RGQK--DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       165 ~G~~--eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      .|+.  .+++.|+..|+++|.+|..|+||||+|+   +.+++++|...+......+..|.||++.|...++..+...++.
T Consensus       232 ~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        232 GSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             cCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9975  6889999999999999999999999996   4567776644333334456778899999999999999998885


Q ss_pred             CC
Q psy6441         240 NQ  241 (464)
Q Consensus       240 n~  241 (464)
                      ..
T Consensus       312 ~~  313 (471)
T PHA03095        312 KN  313 (471)
T ss_pred             hC
Confidence            44

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=3.7e-20  Score=170.96  Aligned_cols=125  Identities=21%  Similarity=0.206  Sum_probs=111.6

Q ss_pred             HhcCCCCCcchhhhhhcCChhhhhcchhh-----cCCCcccccchhhhHHHHHHhcCC----HHHHHHHHHCCCCccccc
Q psy6441          81 LSQMPDGHGSIVNGMENTHLNSARLPFSV-----LGVSDMDRVKYLEEQLREASCLGD----FEAVCELVSKGIDINAQH  151 (464)
Q Consensus        81 l~~~~~g~TpLh~Aa~~G~~~iVk~LL~~-----~ga~~~~~d~~G~TpLh~Aa~~G~----~eiVk~LL~~Gadvn~~d  151 (464)
                      ..++..|.|+||+|++.|+.++++.|+..     .|++++.+|..|+||||+|+..|+    .+++++|++.|+++|.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            34567899999999999999999988543     268899999999999999999999    588999999999999985


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         152 DMNGWTALHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       152 d~~G~TpLH~Aa~~G~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      ...|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|.   +.+++++|.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~  152 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILR  152 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            4489999999999999999999998 59999999999999999995   567888773

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.82  E-value=3.6e-20  Score=204.88  Aligned_cols=171  Identities=13%  Similarity=0.052  Sum_probs=142.0

Q ss_pred             CCCCCcchhhhhh--cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC--HHHHHHHHHCCCCcccccCCCCCcHH
Q psy6441          84 MPDGHGSIVNGME--NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD--FEAVCELVSKGIDINAQHDMNGWTAL  159 (464)
Q Consensus        84 ~~~g~TpLh~Aa~--~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~--~eiVk~LL~~Gadvn~~dd~~G~TpL  159 (464)
                      +..|.||||+|+.  .++.+++++|++. |++++.+|..|+||||+|+..|+  .++|++|+++||++|.++. .|+|||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~-~G~TPL  251 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV-NGMSPI  251 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC-CCCCHH
Confidence            3469999999865  4678999999999 99999999999999999999995  5899999999999999965 999999


Q ss_pred             HHH-------------------------------------HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc-----c
Q psy6441         160 HWA-------------------------------------AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT-----K  197 (464)
Q Consensus       160 H~A-------------------------------------a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~-----~  197 (464)
                      |+|                                     +..|+.+++++|+++|++++.+|..|+||||+|+     +
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence            975                                     4568889999999999999999999999999874     3


Q ss_pred             HHHHHHHhCCCCCcccCCCCCCCcccccCC--------------CCcHHHHHHHHhCCCCCCCCCCCCCCCCcc
Q psy6441         198 PEVRILLGGEPGVTINTADLPIVPNYIKNE--------------PLDPRVNDYQVSNQNRTHQTNPVTANQNVV  257 (464)
Q Consensus       198 ~~i~~LL~~~~~~~~~~~~~~~tpl~laa~--------------~~h~a~~~~l~sn~~~~~~~~p~~~~~p~~  257 (464)
                      .+++++|...+......+..|.||++.+..              .++..+.++|++++....... ..+.+|..
T Consensus       332 ~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn-~~G~TPLh  404 (764)
T PHA02716        332 TDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVN-CLGYTPLT  404 (764)
T ss_pred             chHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcC-CCCCChHH
Confidence            478888854444335567789999997532              367889999999988777666 55666653

>KOG0510|consensus

Probab=99.81  E-value=1.1e-19  Score=195.33  Aligned_cols=217  Identities=16%  Similarity=0.107  Sum_probs=166.8

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchhh---hccchhHHHHhhhHHHH-HHHhc------------CCCCCcch
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNTI---IRKDKDVARLTMFQEIE-LVLSQ------------MPDGHGSI   91 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~---~~~~~~~a~l~~~~ei~-~ll~~------------~~~g~TpL   91 (464)
                      .+-.+.+++|++|.....+..+.+.....-+...   .....|.++..+..|.. ..+.+            ++.+.|||
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pL  229 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPL  229 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcch
Confidence            4456788999999988887334444433222211   12234555555444433 33331            36889999


Q ss_pred             hhhhhcCChhhhhcchhhcCCC---------------cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCC
Q psy6441          92 VNGMENTHLNSARLPFSVLGVS---------------DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        92 h~Aa~~G~~~iVk~LL~~~ga~---------------~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                      |.|+..|++++++.+|+. |..               ++..|.+|.||||+||+.|+.+++..|+..|++++.++ .++.
T Consensus       230 hlAve~g~~e~lk~~L~n-~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn-~d~~  307 (929)
T KOG0510|consen  230 HLAVEGGDIEMLKMCLQN-GKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN-KDEE  307 (929)
T ss_pred             hhhhhcCCHHHHHHHHhC-ccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC-CCCC
Confidence            999999999999999987 332               24557789999999999999999999999999999996 4999


Q ss_pred             cHHHHHHHcCCHHHHHHHHH-CC-CCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcc---cCCCCCCCcccccCCC
Q psy6441         157 TALHWAAKRGQKDIVSYLLK-HG-ADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTI---NTADLPIVPNYIKNEP  228 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~-~G-Adin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~---~~~~~~~tpl~laa~~  228 (464)
                      ||||.||.+|++.+|+-||+ .| ...|..|..|.||||+|+   +..++++|...+....   ..+..+.|++|+|+..
T Consensus       308 spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKY  387 (929)
T ss_pred             CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHh
Confidence            99999999999999999999 55 678899999999999996   6688888865555443   4478899999999999


Q ss_pred             CcHHHHHHHHhCCCCCCC
Q psy6441         229 LDPRVNDYQVSNQNRTHQ  246 (464)
Q Consensus       229 ~h~a~~~~l~sn~~~~~~  246 (464)
                      ++..+++++.+++..-..
T Consensus       388 g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  388 GNTSAVQKLISHGADIGV  405 (929)
T ss_pred             ccHHHHHHHHHcCCceee
Confidence            999999999999877644

>KOG0508|consensus

Probab=99.81  E-value=7.5e-20  Score=186.78  Aligned_cols=184  Identities=17%  Similarity=0.158  Sum_probs=155.3

Q ss_pred             HHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCCccccc--------chhhhHHHHHHhcCCHHHHHHHHHCCCC
Q psy6441          75 QEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV--------KYLEEQLREASCLGDFEAVCELVSKGID  146 (464)
Q Consensus        75 ~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d--------~~G~TpLh~Aa~~G~~eiVk~LL~~Gad  146 (464)
                      .++..++....+|.|||.+||++||.++|++|++++++++....        ..|-+||..|+..||.++|+.|+++|++
T Consensus        30 ~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~  109 (615)
T KOG0508|consen   30 EEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS  109 (615)
T ss_pred             HHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc
Confidence            45666677778999999999999999999999998788775432        4678899999999999999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCccc
Q psy6441         147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNY  223 (464)
Q Consensus       147 vn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~  223 (464)
                      +|.... ...|||-.||.-||.++|++|+++|||+++.|..|.|.||+||   +.+|+++|...+...+.++..|.|++|
T Consensus       110 VN~tT~-TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH  188 (615)
T KOG0508|consen  110 VNDTTR-TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH  188 (615)
T ss_pred             cccccc-cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence            998744 6779999999999999999999999999999999999999997   668998886555555777888999999


Q ss_pred             ccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCcccCCC
Q psy6441         224 IKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTTSH  261 (464)
Q Consensus       224 laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~~~~~~  261 (464)
                      .++..+|.++.+.|+.+++.-..-.  .+-+|...++.
T Consensus       189 ~caEsG~vdivq~Ll~~ga~i~~d~--~GmtPL~~Aa~  224 (615)
T KOG0508|consen  189 DCAESGSVDIVQLLLKHGAKIDVDG--HGMTPLLLAAV  224 (615)
T ss_pred             hhhhcccHHHHHHHHhCCceeeecC--CCCchHHHHhh
Confidence            9999999999999998866544332  24455444433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.81  E-value=1e-19  Score=201.23  Aligned_cols=156  Identities=13%  Similarity=0.036  Sum_probs=131.5

Q ss_pred             CCCCCcchhhhhhcCCh--hhhhcchhhcCCCcccccchhhhHHHHH---------------------------------
Q psy6441          84 MPDGHGSIVNGMENTHL--NSARLPFSVLGVSDMDRVKYLEEQLREA---------------------------------  128 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~--~iVk~LL~~~ga~~~~~d~~G~TpLh~A---------------------------------  128 (464)
                      +..|.||||+|+..|+.  ++|++|++. |++++.+|..|+||||+|                                 
T Consensus       209 D~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~  287 (764)
T PHA02716        209 NNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHS  287 (764)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHH
Confidence            46899999999999964  899999999 999999999999999975                                 


Q ss_pred             ----HhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc------
Q psy6441         129 ----SCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK--RGQKDIVSYLLKHGADKSLLTSKEETPLALAT------  196 (464)
Q Consensus       129 ----a~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~--~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~------  196 (464)
                          +..|+.+++++|+++|++++.+|. .|+||||+|+.  .++.+++++|+++||+++.+|..|+||||+|+      
T Consensus       288 ~i~AA~~g~leiVklLLe~GAdIN~kD~-~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~  366 (764)
T PHA02716        288 YITLARNIDISVVYSFLQPGVKLHYKDS-AGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVV  366 (764)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCceeccCC-CCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhh
Confidence                456888999999999999999955 99999999874  46899999999999999999999999999873      


Q ss_pred             -----------cHHHHHHHhCCCCCcccCCCCCCCccc----ccCCCCcHHHHHHHHhCC
Q psy6441         197 -----------KPEVRILLGGEPGVTINTADLPIVPNY----IKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       197 -----------~~~i~~LL~~~~~~~~~~~~~~~tpl~----laa~~~h~a~~~~l~sn~  241 (464)
                                 +.+++++|...+......+..|.||++    .+....+.++.++|.+.+
T Consensus       367 ~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        367 NILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             ccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence                       357888885544434556778999998    244556778888888764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.80  E-value=6e-19  Score=188.63  Aligned_cols=171  Identities=16%  Similarity=0.137  Sum_probs=96.8

Q ss_pred             CCCCcchhhhhhcC---ChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC---HHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          85 PDGHGSIVNGMENT---HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD---FEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G---~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~---~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      ..|.||||+|+..|   +.+++++|++. |++++..|..|.||||+|+..|+   .+++++|+++|++++.+++..|+||
T Consensus       107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        107 SDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             CCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            35556666655543   44555555555 56666666666666666665555   5566666666666655544455566


Q ss_pred             HHHHHHc----CCHHHHHHHHHCCCCCCCCCCCCCchhHh-------hc---cHHHHHHHhCCCCCcccCCCCCCCcccc
Q psy6441         159 LHWAAKR----GQKDIVSYLLKHGADKSLLTSKEETPLAL-------AT---KPEVRILLGGEPGVTINTADLPIVPNYI  224 (464)
Q Consensus       159 LH~Aa~~----G~~eiv~lLL~~GAdin~~D~~G~TPLh~-------A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~l  224 (464)
                      ||.++..    ++.+++++|+++|++++..+..|.|+++.       +.   ...++.+|..+.+. +..+..|.||++.
T Consensus       186 Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv-N~~d~~G~TPL~~  264 (489)
T PHA02798        186 LHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI-NQVDELGFNPLYY  264 (489)
T ss_pred             HHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC-CCcCcCCccHHHH
Confidence            6655443    24555555555555555544444444330       10   12344444333222 3345567788888


Q ss_pred             cCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCccc
Q psy6441         225 KNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVT  258 (464)
Q Consensus       225 aa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~~~  258 (464)
                      |+...+..+.++|+..++...... ..+.+|..-
T Consensus       265 A~~~~~~~~v~~LL~~GAdin~~d-~~G~TpL~~  297 (489)
T PHA02798        265 SVSHNNRKIFEYLLQLGGDINIIT-ELGNTCLFT  297 (489)
T ss_pred             HHHcCcHHHHHHHHHcCCcccccC-CCCCcHHHH
Confidence            888888888888888877766665 455666443

>KOG0514|consensus

Probab=99.79  E-value=2e-19  Score=178.85  Aligned_cols=159  Identities=20%  Similarity=0.148  Sum_probs=140.5

Q ss_pred             HhcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhc-----CCHHHHHHHHHCCCCcccccCCCC
Q psy6441          81 LSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCL-----GDFEAVCELVSKGIDINAQHDMNG  155 (464)
Q Consensus        81 l~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~-----G~~eiVk~LL~~Gadvn~~dd~~G  155 (464)
                      ...|.+|+|+||+|+.++++++|+.||+..-++++..+.-|+||+++|+..     .+..+|..|.+.| |+|++-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhc
Confidence            344679999999999999999999999997789999999999999998864     3677888888775 7888777799


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCc-ccCCCCCCCcccccCCCCcH
Q psy6441         156 WTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVT-INTADLPIVPNYIKNEPLDP  231 (464)
Q Consensus       156 ~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~-~~~~~~~~tpl~laa~~~h~  231 (464)
                      .|+|++|+..|+.++|+.||..|||+|++|.+|-|+|++|+   +.+|+++|.+.+..+ ...+..|.|++.+|-.++|-
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            99999999999999999999999999999999999999997   789999998888777 55677888999999999998


Q ss_pred             HHHHHHHhC
Q psy6441         232 RVNDYQVSN  240 (464)
Q Consensus       232 a~~~~l~sn  240 (464)
                      ++.-.+...
T Consensus       421 eIa~mlYa~  429 (452)
T KOG0514|consen  421 EIAVMLYAH  429 (452)
T ss_pred             HHHHHHHHH
Confidence            876655444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=4e-19  Score=163.86  Aligned_cols=123  Identities=19%  Similarity=0.151  Sum_probs=107.2

Q ss_pred             CCCCCcchhhhhhcCCh----hhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHH---HHHHHHCCCCcccccCCCCC
Q psy6441          84 MPDGHGSIVNGMENTHL----NSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEA---VCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~----~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~ei---Vk~LL~~Gadvn~~dd~~G~  156 (464)
                      +.++.++||.||+.|+.    +++++|++. |+.++.+|..|+||||+|+..|+.+.   +++|++.|+++|.++...|+
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            45778899999999998    555566666 88999999999999999999998654   89999999999998645899


Q ss_pred             cHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHhCC
Q psy6441         157 TALHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLGGE  207 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~  207 (464)
                      ||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+   +.+++++|...
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999995 79999999999999999996   46788888443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.79  E-value=3.9e-19  Score=190.06  Aligned_cols=172  Identities=13%  Similarity=0.120  Sum_probs=128.8

Q ss_pred             CCCCCcchhhhhhc-----CChhhhhcchhhcCCCcccccchhhhHHHHHHhcC---CHHHHHHHHHCCCCcccccCCCC
Q psy6441          84 MPDGHGSIVNGMEN-----THLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG---DFEAVCELVSKGIDINAQHDMNG  155 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~-----G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G---~~eiVk~LL~~Gadvn~~dd~~G  155 (464)
                      +..|.||||.|+..     ++.+++++|++. |++++.+|..|+||||+|+..+   +.+++++|+++|++++.++. .|
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g  145 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK-DG  145 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC-CC
Confidence            46899999998864     678999999999 9999999999999999999876   78999999999999999954 99


Q ss_pred             CcHHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCCchhHhhc-------cHHHHHHHhCCCCCcccCCCCCCCccc-
Q psy6441         156 WTALHWAAKRGQ---KDIVSYLLKHGADKSLLT-SKEETPLALAT-------KPEVRILLGGEPGVTINTADLPIVPNY-  223 (464)
Q Consensus       156 ~TpLH~Aa~~G~---~eiv~lLL~~GAdin~~D-~~G~TPLh~A~-------~~~i~~LL~~~~~~~~~~~~~~~tpl~-  223 (464)
                      +||||+|+..|+   .+++++|+++|++++.++ ..|.||||.+.       +.+++++|...+......+..+.++++ 
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~  225 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFME  225 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHH
Confidence            999999999998   999999999999999885 57899999874       357888875443322333333344433 


Q ss_pred             ------ccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCcccC
Q psy6441         224 ------IKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVVTT  259 (464)
Q Consensus       224 ------laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~~~~  259 (464)
                            .+...++..+..++... .....+. ..+.+|..-+
T Consensus       226 ~l~~l~~~~~~~~~~i~~~l~~~-~dvN~~d-~~G~TPL~~A  265 (489)
T PHA02798        226 YLNSLLYDNKRFKKNILDFIFSY-IDINQVD-ELGFNPLYYS  265 (489)
T ss_pred             HHHHHHhhcccchHHHHHHHHhc-CCCCCcC-cCCccHHHHH
Confidence                  13344455555555543 3333333 3455565433

>KOG0510|consensus

Probab=99.79  E-value=6.8e-19  Score=189.32  Aligned_cols=215  Identities=19%  Similarity=0.128  Sum_probs=170.3

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCC
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTH   99 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~   99 (464)
                      +...++|+|......+....+...+.   +...-..++.+.+...+..|....+..        +.+|++|+|.|++.|.
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s  199 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS  199 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence            34566777777666666666665553   223334467888888888776554443        3688899999999999


Q ss_pred             hhhhhcchhhc----CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCC---------------cccccCCCCCcHHH
Q psy6441         100 LNSARLPFSVL----GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID---------------INAQHDMNGWTALH  160 (464)
Q Consensus       100 ~~iVk~LL~~~----ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gad---------------vn~~dd~~G~TpLH  160 (464)
                      .++.+..+.+.    +..++.-+..|.||||.|+..|+.++++.+|+.|+.               +|..| .+|.||||
T Consensus       200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d-~dg~tpLH  278 (929)
T KOG0510|consen  200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED-NDGCTPLH  278 (929)
T ss_pred             hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc-ccCCchHH
Confidence            99999888821    667888889999999999999999999999998754               33343 48999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc----HHHHHHHhCCCC-CcccCCCCCCCcccccCCCCcHHHHH
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPG-VTINTADLPIVPNYIKNEPLDPRVND  235 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~----~~i~~LL~~~~~-~~~~~~~~~~tpl~laa~~~h~a~~~  235 (464)
                      +||+.|+.++++.|+..||+++.++.++.||||.|+.    ..+.+||..... .-+..+..+.||+|+++..+|..+++
T Consensus       279 ~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~q  358 (929)
T KOG0510|consen  279 YAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQ  358 (929)
T ss_pred             HHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHH
Confidence            9999999999999999999999999999999999973    356677762322 33667778999999999999999999


Q ss_pred             HHHhCCCCCCC
Q psy6441         236 YQVSNQNRTHQ  246 (464)
Q Consensus       236 ~l~sn~~~~~~  246 (464)
                      .|+.+++....
T Consensus       359 lLl~~GA~~~~  369 (929)
T KOG0510|consen  359 LLLNKGALFLN  369 (929)
T ss_pred             HHHhcChhhhc
Confidence            99999887764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1e-18  Score=175.40  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=122.2

Q ss_pred             hcCCCCCc-chhhhhhcCChhhhhcchhhcCCCccccc----chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCC
Q psy6441          82 SQMPDGHG-SIVNGMENTHLNSARLPFSVLGVSDMDRV----KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        82 ~~~~~g~T-pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d----~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                      .++..|.| +||.|+..|+.+++++|+++ |++++.++    ..|.||||+|+..|+.+++++|+++||++|.+++..|+
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            44566666 56777888999999999999 99999874    58999999999999999999999999999987555799


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                      ||||+|+..|+.+++++|+.+||+++.+|..|+||||+|+   +..++.++. +.+    .+..+.+|....   ...++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC-DNE----ISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc-CCc----ccccccChhhhh---ccHHH
Confidence            9999999999999999999999999999999999999995   445665552 221    122223444432   24677


Q ss_pred             HHHHHhCCC
Q psy6441         234 NDYQVSNQN  242 (464)
Q Consensus       234 ~~~l~sn~~  242 (464)
                      .+.+.++..
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.78  E-value=2.5e-18  Score=184.09  Aligned_cols=222  Identities=14%  Similarity=0.076  Sum_probs=157.1

Q ss_pred             ChHhHHHHHHHhc--CCCCHHHHHHhcCCchh--hhccchhHHHHh------hhHHHHHHHhc--------CCCCCcchh
Q psy6441          31 TYYSLLNICCKEL--NIDSPQTILKIRKLPNT--IIRKDKDVARLT------MFQEIELVLSQ--------MPDGHGSIV   92 (464)
Q Consensus        31 ~~~~lL~i~c~~~--~i~~~~~l~~~~~l~~~--~~~~~~~~a~l~------~~~ei~~ll~~--------~~~g~TpLh   92 (464)
                      .+.++++.++...  ..+.++.+...+.-.+.  ...++.+.+...      ...++..++.+        +..|.||||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~  113 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIV  113 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            3556665544433  34555566554432221  123455544321      12333333322        357899999


Q ss_pred             hhhhc---CChhhhhcchhhcCCCc-ccccchhhhHHHHHHhc--CCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcC
Q psy6441          93 NGMEN---THLNSARLPFSVLGVSD-MDRVKYLEEQLREASCL--GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        93 ~Aa~~---G~~~iVk~LL~~~ga~~-~~~d~~G~TpLh~Aa~~--G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      .|+..   |+.+++++|++. |+++ +.+|..|+||||+|+..  ++.+++++|+++|++++...+..|.||||+|+..+
T Consensus       114 ~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        114 CFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc
Confidence            87654   678999999998 9999 78899999999998754  68899999999999998843558999999987764


Q ss_pred             ----CHHHHHHHHHCCCCCCCCCCCCCchhHhhc---------cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         167 ----QKDIVSYLLKHGADKSLLTSKEETPLALAT---------KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       167 ----~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---------~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                          +.+++++|+++|++++.+|..|.||||.+.         ...++++|..+.+. +..+..|.||++.|+..++..+
T Consensus       193 ~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv-n~~d~~G~TpL~~Aa~~~~~~~  271 (494)
T PHA02989        193 IDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI-NKKDKKGFNPLLISAKVDNYEA  271 (494)
T ss_pred             cccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC-CCCCCCCCCHHHHHHHhcCHHH
Confidence                889999999999999999888889998763         23566666554333 4456778899999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCC
Q psy6441         234 NDYQVSNQNRTHQTNPVTANQN  255 (464)
Q Consensus       234 ~~~l~sn~~~~~~~~p~~~~~p  255 (464)
                      .++|+++++....+. ..+.+|
T Consensus       272 v~~LL~~Gadin~~d-~~G~Tp  292 (494)
T PHA02989        272 FNYLLKLGDDIYNVS-KDGDTV  292 (494)
T ss_pred             HHHHHHcCCCccccC-CCCCCH
Confidence            999998887766655 344444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.78  E-value=3.3e-18  Score=189.87  Aligned_cols=108  Identities=25%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             CCCcchhhhhhcCCh-hhhhcchhhcCCCcccccchhhhHHHHHHhcC-CHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          86 DGHGSIVNGMENTHL-NSARLPFSVLGVSDMDRVKYLEEQLREASCLG-DFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~-~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G-~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      .|.||||+|+..|+. ++++.|++. |++++..|..|+||||+|+..| +.+++++|+..|++++.++. .|+||||+|+
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~-~g~TpLh~A~  349 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR-LYITPLHQAS  349 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc-CCCcHHHHHH
Confidence            344555555554443 244444444 5555555555555555555554 34455555555555554432 4555555554


Q ss_pred             Hc-CCHHHHHHHHHCCCCCCCCCCCCCchhHhh
Q psy6441         164 KR-GQKDIVSYLLKHGADKSLLTSKEETPLALA  195 (464)
Q Consensus       164 ~~-G~~eiv~lLL~~GAdin~~D~~G~TPLh~A  195 (464)
                      .. ++.+++.+|+++|++++.+|..|+||||+|
T Consensus       350 ~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~A  382 (682)
T PHA02876        350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYA  382 (682)
T ss_pred             HhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence            43 234445555555555555555555555555

>KOG0512|consensus

Probab=99.78  E-value=4.3e-19  Score=161.16  Aligned_cols=138  Identities=25%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             chhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD  169 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~e  169 (464)
                      -+.+|+..+.+..|+.||+...-.+|.+|.+|.||||.|+++||.+||+.|+..||+++++.. .||||||-||+-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~-~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN-EGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc-cCccchhhhhcccchh
Confidence            467899999999999999985566899999999999999999999999999999999999966 9999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCchhHhhcc----HHHHHHHhCCCCCc-ccCCCCCCCcccccCCC
Q psy6441         170 IVSYLLKHGADKSLLTSKEETPLALATK----PEVRILLGGEPGVT-INTADLPIVPNYIKNEP  228 (464)
Q Consensus       170 iv~lLL~~GAdin~~D~~G~TPLh~A~~----~~i~~LL~~~~~~~-~~~~~~~~tpl~laa~~  228 (464)
                      |+.+||++|||+|+.....+||||+|+.    ...+.+|....... -..+...-||..+|...
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            9999999999999999999999999962    35556664444433 22334455777776554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=3.7e-19  Score=161.19  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=102.5

Q ss_pred             HHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCC-------CcccccchhhhHHHHHHhcCCH---HHHHHHHHCCCCc
Q psy6441          78 ELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGV-------SDMDRVKYLEEQLREASCLGDF---EAVCELVSKGIDI  147 (464)
Q Consensus        78 ~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga-------~~~~~d~~G~TpLh~Aa~~G~~---eiVk~LL~~Gadv  147 (464)
                      ......+.+|.||||+|++.|+.  +..+... +.       .++..|..|+||||+|+..|+.   +++++|++.|+++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~-~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFK-NAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHH-HHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            33445567899999999999984  3333222 21       2335688999999999999987   4688999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         148 NAQHDMNGWTALHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       148 n~~dd~~G~TpLH~Aa~~G~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +.+++..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+   +.+++++|.
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99865589999999999999999999998 59999999999999999996   467777774

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.77  E-value=3.3e-18  Score=193.76  Aligned_cols=136  Identities=16%  Similarity=0.039  Sum_probs=114.1

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +..|.||||+|+..|+.++++.|+++ |++++.+|..|+||||+|+..|+.+++++|++.++..+..   .|.++||+|+
T Consensus       555 d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~---~~~~~L~~Aa  630 (823)
T PLN03192        555 DSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPH---AAGDLLCTAA  630 (823)
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcc---cCchHHHHHH
Confidence            46899999999999999999999998 9999999999999999999999999999999888766543   6779999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC-CCCCcccCCCCCCCccc
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG-EPGVTINTADLPIVPNY  223 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~-~~~~~~~~~~~~~tpl~  223 (464)
                      ..|+.+++++|+++|+|+|.+|.+|+||||+|+   +.+++++|.. +++.+........+|..
T Consensus       631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~  694 (823)
T PLN03192        631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE  694 (823)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999999999996   5678887743 33333322222255543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.6e-18  Score=191.38  Aligned_cols=151  Identities=12%  Similarity=-0.010  Sum_probs=100.0

Q ss_pred             CCCCcchhhhhhcCChhh----hhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          85 PDGHGSIVNGMENTHLNS----ARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~i----Vk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      ..|+||||+|+..|+.++    ++.|++. +...+..+.  .+++|+|+..|+.++|++|+++|+++|.++. +|+||||
T Consensus        66 ~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~-~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~g~T~L~  141 (661)
T PHA02917         66 WRQLTPLEEYTNSRHVKVNKDIAMALLEA-TGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-NHRSVIE  141 (661)
T ss_pred             CCCCCHHHHHHHcCChhHHHHHHHHHHhc-cCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCC-CCccHHH
Confidence            456777777777666433    3445544 222222221  2455666666777888888888888888854 8888888


Q ss_pred             HHH--HcCCHHHHHHHHHCCCCCCCCCC---CC-----------CchhHhhc--------------cHHHHHHHhCCCCC
Q psy6441         161 WAA--KRGQKDIVSYLLKHGADKSLLTS---KE-----------ETPLALAT--------------KPEVRILLGGEPGV  210 (464)
Q Consensus       161 ~Aa--~~G~~eiv~lLL~~GAdin~~D~---~G-----------~TPLh~A~--------------~~~i~~LL~~~~~~  210 (464)
                      +|+  ..|+.+++++|+++||+++.+|.   .|           .||||+|+              +.+++++|...+..
T Consensus       142 ~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad  221 (661)
T PHA02917        142 NYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK  221 (661)
T ss_pred             HHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC
Confidence            543  46788888888888888876553   23           48888884              24677777544433


Q ss_pred             cccCCCCCCCcccccCCCCcH--HHHHHHHh
Q psy6441         211 TINTADLPIVPNYIKNEPLDP--RVNDYQVS  239 (464)
Q Consensus       211 ~~~~~~~~~tpl~laa~~~h~--a~~~~l~s  239 (464)
                      .+..+..|.||+++++..++.  ++++.|..
T Consensus       222 vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        222 PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            355567788888888877774  57777764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.76  E-value=2e-18  Score=180.26  Aligned_cols=156  Identities=8%  Similarity=-0.052  Sum_probs=131.9

Q ss_pred             CCCCCcchhhhhh--cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC-----CCCC
Q psy6441          84 MPDGHGSIVNGME--NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD-----MNGW  156 (464)
Q Consensus        84 ~~~g~TpLh~Aa~--~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd-----~~G~  156 (464)
                      +..++|+||.|+.  .|+.++|++|+++ |++++..  .+.||||+|+..|+.+++++|+++|++.+...+     ..|.
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            3567999999999  8999999999999 9999885  458999999999999999999999985432211     2478


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCC----
Q psy6441         157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPL----  229 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~----  229 (464)
                      |++|.|+..++.+++++|+++|||+|.+|..|.||||+|+   +.+++++|...+......+..|.||++.|+..+    
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~  269 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIA  269 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccc
Confidence            9999999999999999999999999999999999999996   567888885554444566778999999998776    


Q ss_pred             ----cHHHHHHHHhCCC
Q psy6441         230 ----DPRVNDYQVSNQN  242 (464)
Q Consensus       230 ----h~a~~~~l~sn~~  242 (464)
                          |..+.+.|+++++
T Consensus       270 ~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        270 RRETHLKILEILLREPL  286 (437)
T ss_pred             ccccHHHHHHHHHhCCC
Confidence                5678888886554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.76  E-value=6.7e-18  Score=186.42  Aligned_cols=214  Identities=13%  Similarity=0.021  Sum_probs=156.9

Q ss_pred             CCChHhHHHHHHHh---cCCCCHHHHHHhcCCch---hhhccchhHHHHhhhHH----HHHHHh-c----C-CCCCcchh
Q psy6441          29 ELTYYSLLNICCKE---LNIDSPQTILKIRKLPN---TIIRKDKDVARLTMFQE----IELVLS-Q----M-PDGHGSIV   92 (464)
Q Consensus        29 ~l~~~~lL~i~c~~---~~i~~~~~l~~~~~l~~---~~~~~~~~~a~l~~~~e----i~~ll~-~----~-~~g~TpLh   92 (464)
                      +..+.++||++|..   ...+.++.+...+.-.+   ....++++.+...+..+    +..++. .    + .+..+++|
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~  108 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY  108 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence            55678999998777   44665666665443332   23346777777655422    223332 2    1 23346678


Q ss_pred             hhhhcCChhhhhcchhhcCCCcccccchhhhHHHHH--HhcCCHHHHHHHHHCCCCcccccC--CCC-----------Cc
Q psy6441          93 NGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREA--SCLGDFEAVCELVSKGIDINAQHD--MNG-----------WT  157 (464)
Q Consensus        93 ~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~A--a~~G~~eiVk~LL~~Gadvn~~dd--~~G-----------~T  157 (464)
                      +|+..|+.++|++|++. |++++.+|..|+||||+|  +..|+.+++++|+++|+++|..+.  ..|           +|
T Consensus       109 ~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccccc
Confidence            89999999999999999 999999999999999964  357899999999999999986532  234           59


Q ss_pred             HHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc-----HHHHHHHhCCCCCc---ccCCCCC
Q psy6441         158 ALHWAAK-----------RGQKDIVSYLLKHGADKSLLTSKEETPLALATK-----PEVRILLGGEPGVT---INTADLP  218 (464)
Q Consensus       158 pLH~Aa~-----------~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~-----~~i~~LL~~~~~~~---~~~~~~~  218 (464)
                      |||+|+.           +++.+++++|+++|||++.+|.+|+||||+|+.     .+++++|..+.+..   ...+..+
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~  267 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTC  267 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCccc
Confidence            9999986           568999999999999999999999999999972     37999986544332   1233445


Q ss_pred             CCcccccCC---------CCcHHHHHHHHhCCCC
Q psy6441         219 IVPNYIKNE---------PLDPRVNDYQVSNQNR  243 (464)
Q Consensus       219 ~tpl~laa~---------~~h~a~~~~l~sn~~~  243 (464)
                      .+|++++..         ..+..+++.|+.++..
T Consensus       268 ~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        268 CTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             ccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            565555541         2377888999988753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.75  E-value=8e-18  Score=190.66  Aligned_cols=160  Identities=12%  Similarity=0.000  Sum_probs=139.8

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      .++.++||.||..|+.++++.|++. |++++..|..|+||||+||..|+.+++++|+++|+++|.+|. +|+||||+|+.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~  600 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAIS  600 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHH
Confidence            3567899999999999999999999 999999999999999999999999999999999999999955 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      .||.+++++|++.++..+.  ..|.++||+|+   +.+++++|...+...+..+..+.||+++|+..++..++++|+.++
T Consensus       601 ~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  678 (823)
T PLN03192        601 AKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG  678 (823)
T ss_pred             hCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            9999999999998876653  45779999997   456777664433333556788999999999999999999999988


Q ss_pred             CCCCCCC
Q psy6441         242 NRTHQTN  248 (464)
Q Consensus       242 ~~~~~~~  248 (464)
                      +......
T Consensus       679 Adv~~~~  685 (823)
T PLN03192        679 ADVDKAN  685 (823)
T ss_pred             CCCCCCC
Confidence            7766555

>KOG4177|consensus

Probab=99.75  E-value=2.6e-18  Score=194.06  Aligned_cols=175  Identities=25%  Similarity=0.281  Sum_probs=145.7

Q ss_pred             cCCChHhHHHHHHHhc-CCCCHHHHHHhcCCchhhh---ccchhHHHHhhhHHHHHHHhcC--------CCCCcchhhhh
Q psy6441          28 TELTYYSLLNICCKEL-NIDSPQTILKIRKLPNTII---RKDKDVARLTMFQEIELVLSQM--------PDGHGSIVNGM   95 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~-~i~~~~~l~~~~~l~~~~~---~~~~~~a~l~~~~ei~~ll~~~--------~~g~TpLh~Aa   95 (464)
                      +++.+++++|+++..+ .......+......++...   .+..+.++..+..+++.++...        +.+.++||.|.
T Consensus       436 ~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  436 KAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             HhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh
Confidence            4456688999998887 3332223333333344333   3557778877777777766653        57889999999


Q ss_pred             hcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy6441          96 ENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL  175 (464)
Q Consensus        96 ~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL  175 (464)
                      ..++..+++.++++ |++++.++.+|.||||.||.+|+.++|++||++|+++++++ ..|+||||.||..|+.+|+.+|+
T Consensus       516 ~~~~v~~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             hhhhHHHHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhhHHHHcChHHHHHHHH
Confidence            99999999999999 99999999999999999999999999999999999999996 59999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCchhHhhc---cHHHHHHH
Q psy6441         176 KHGADKSLLTSKEETPLALAT---KPEVRILL  204 (464)
Q Consensus       176 ~~GAdin~~D~~G~TPLh~A~---~~~i~~LL  204 (464)
                      ++||++|..|.+|.|||++|.   +..++++|
T Consensus       594 k~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  594 KHGASVNAADLDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             HcCCCCCcccccCcchhHHHHHhcccchhhHH
Confidence            999999999999999999995   45677776

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1e-17  Score=179.36  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=101.9

Q ss_pred             CCCcchhhhhhc--CChhhhhcchhhcCCCcccccchhhhHHHHHHhcC------CHHHHHHHHHCCCCcccccCCCCCc
Q psy6441          86 DGHGSIVNGMEN--THLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG------DFEAVCELVSKGIDINAQHDMNGWT  157 (464)
Q Consensus        86 ~g~TpLh~Aa~~--G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G------~~eiVk~LL~~Gadvn~~dd~~G~T  157 (464)
                      .|.|+||.++..  ++.++|++|++. |++++.++ .+.||||+|+..+      +.+++++|+++|+++|.++. .|+|
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~t  110 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF-NGVS  110 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCC-CCCc
Confidence            567777654432  356777777777 77777665 4577777776543      45677777777777777743 7777


Q ss_pred             HHHHHHHc---CCHHHHHHHHHCCCCC-CCCCCCCCchhHhhc-----cHHHHHHHhC-CCCCcccCCCCCCCcccccCC
Q psy6441         158 ALHWAAKR---GQKDIVSYLLKHGADK-SLLTSKEETPLALAT-----KPEVRILLGG-EPGVTINTADLPIVPNYIKNE  227 (464)
Q Consensus       158 pLH~Aa~~---G~~eiv~lLL~~GAdi-n~~D~~G~TPLh~A~-----~~~i~~LL~~-~~~~~~~~~~~~~tpl~laa~  227 (464)
                      |||.|+..   |+.+++++|+++|||+ +.+|..|+||||+|+     +.+++++|.. +.+.....+..+.||++.+..
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            77776544   5677777777777777 677777777777763     3466666632 222222234566677765533


Q ss_pred             ----CCcHHHHHHHHhCCCCCCCC
Q psy6441         228 ----PLDPRVNDYQVSNQNRTHQT  247 (464)
Q Consensus       228 ----~~h~a~~~~l~sn~~~~~~~  247 (464)
                          ..+.++.++|++++......
T Consensus       191 ~~~~~~~~~iv~~Ll~~Ga~vn~~  214 (494)
T PHA02989        191 NDIDVISIKVIKYLIKKGVNIETN  214 (494)
T ss_pred             cccccccHHHHHHHHhCCCCcccc
Confidence                34667777777766554443

>KOG0502|consensus

Probab=99.73  E-value=1.3e-18  Score=163.27  Aligned_cols=113  Identities=24%  Similarity=0.244  Sum_probs=106.5

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ..|+.|.|||+||+.+|++.+|++||+. |++++...+...++|.+|++.|..++|++||.++.|+|.- |.+|-|||-|
T Consensus       155 ~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy-DwNGgTpLly  232 (296)
T KOG0502|consen  155 ACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY-DWNGGTPLLY  232 (296)
T ss_pred             CccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee-ccCCCceeee
Confidence            3468999999999999999999999999 9999999999999999999999999999999999999998 5699999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      |++.||.+|++.||..|||++..+..|.+++.+|.
T Consensus       233 Avrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  233 AVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             eecCChHHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence            99999999999999999999999999999999995

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=1.2e-17  Score=137.08  Aligned_cols=89  Identities=35%  Similarity=0.439  Sum_probs=82.0

Q ss_pred             hhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHH
Q psy6441          91 IVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI  170 (464)
Q Consensus        91 Lh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~ei  170 (464)
                      ||+|++.|+.+++++|++. +.+++.    |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD-KNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS-TTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC-CCCCCHHHHHHHcCCHHH
Confidence            7999999999999999997 888877    8899999999999999999999999999996 599999999999999999


Q ss_pred             HHHHHHCCCCCCCCC
Q psy6441         171 VSYLLKHGADKSLLT  185 (464)
Q Consensus       171 v~lLL~~GAdin~~D  185 (464)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.4e-17  Score=172.29  Aligned_cols=144  Identities=19%  Similarity=0.095  Sum_probs=118.2

Q ss_pred             hccchhHHHH--hhhHHHHHHHhcC------CCCCcchhhhhhcCChhhhhcchhhcCCCccccc------chhhhHHHH
Q psy6441          62 IRKDKDVARL--TMFQEIELVLSQM------PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV------KYLEEQLRE  127 (464)
Q Consensus        62 ~~~~~~~a~l--~~~~ei~~ll~~~------~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d------~~G~TpLh~  127 (464)
                      ..+.++.+..  .+..++...+...      .++.||||.|+..|+.+++++|+++ |++.....      ..+.|++|.
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~  194 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFL  194 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHH
Confidence            3455565555  4455555444432      3668999999999999999999999 87433221      347899999


Q ss_pred             HHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc----------
Q psy6441         128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----------  197 (464)
Q Consensus       128 Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~----------  197 (464)
                      |+..++.+++++|+++|+++|.++. .|+||||+|+..|+.+++++|+++||+++.+|..|+||||+|+.          
T Consensus       195 a~~~~~~eIve~LIs~GADIN~kD~-~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~  273 (437)
T PHA02795        195 VDEPTVLEIYKLCIPYIEDINQLDA-GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRET  273 (437)
T ss_pred             HHhcCHHHHHHHHHhCcCCcCcCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccccc
Confidence            9999999999999999999999955 99999999999999999999999999999999999999999952          


Q ss_pred             -HHHHHHHhCC
Q psy6441         198 -PEVRILLGGE  207 (464)
Q Consensus       198 -~~i~~LL~~~  207 (464)
                       .+++++|...
T Consensus       274 ~~eIvelLL~~  284 (437)
T PHA02795        274 HLKILEILLRE  284 (437)
T ss_pred             HHHHHHHHHhC
Confidence             3688888543

>KOG4177|consensus

Probab=99.71  E-value=2e-17  Score=186.98  Aligned_cols=180  Identities=21%  Similarity=0.173  Sum_probs=155.6

Q ss_pred             ccchhHHHHhh-hHHHHHHHhcC--------CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC
Q psy6441          63 RKDKDVARLTM-FQEIELVLSQM--------PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD  133 (464)
Q Consensus        63 ~~~~~~a~l~~-~~ei~~ll~~~--------~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~  133 (464)
                      .+..+++...+ +.++...+.+.        +.|.||||.|+..||.++++.|++. ++..+.....|-++||.|...++
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~-~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG-GANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhc-CCccCccchhccchhhhhhhhhh
Confidence            35566676666 44444443332        6899999999999999999999988 77888888899999999999999


Q ss_pred             HHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCC
Q psy6441         134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV  210 (464)
Q Consensus       134 ~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~  210 (464)
                      ..+++.++++|++++.++. .|.||||.||.+|+.++|++||++|||++++|+.|+||||.|+   +.+|+.+|...+..
T Consensus       520 v~~~~~l~~~ga~v~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             HHHHHHHhhcCCceehhcc-cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            9999999999999999954 9999999999999999999999999999999999999999997   67899999777777


Q ss_pred             cccCCCCCCCcccccCCCCcHHHHHHHHhCCCCC
Q psy6441         211 TINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRT  244 (464)
Q Consensus       211 ~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~  244 (464)
                      .+..+..+.||++.+...+++.+...+......+
T Consensus       599 vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            6778888999999999999999999888666554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=7e-17  Score=181.11  Aligned_cols=208  Identities=14%  Similarity=-0.002  Sum_probs=153.3

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHh-----cCCchhhhccchh-HHHHhhhHHHHHHHhcC----CCCCcchhhhhhcC---
Q psy6441          32 YYSLLNICCKELNIDSPQTILKI-----RKLPNTIIRKDKD-VARLTMFQEIELVLSQM----PDGHGSIVNGMENT---   98 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~-----~~l~~~~~~~~~~-~a~l~~~~ei~~ll~~~----~~g~TpLh~Aa~~G---   98 (464)
                      .+..+..|++.+++..+..+...     .+..+..+++..+ .|...+..++..++...    ..|.||||.|+..+   
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence            46778888999888777666654     2234456677888 77777777777666443    57999999999722   


Q ss_pred             ChhhhhcchhhcCCC------cc----cccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC-------------CCC
Q psy6441          99 HLNSARLPFSVLGVS------DM----DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD-------------MNG  155 (464)
Q Consensus        99 ~~~iVk~LL~~~ga~------~~----~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd-------------~~G  155 (464)
                      ...++..+... +..      ++    .....|.||||+||..|+.++|++|+++|++++.++.             ..|
T Consensus        97 v~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g  175 (743)
T TIGR00870        97 VEAILLHLLAA-FRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG  175 (743)
T ss_pred             HHHHHHHHhhc-ccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccccc
Confidence            22333333333 211      11    1235699999999999999999999999999997532             258


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccH------------HHHHHH---hCCCCCc----ccCCC
Q psy6441         156 WTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKP------------EVRILL---GGEPGVT----INTAD  216 (464)
Q Consensus       156 ~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~------------~i~~LL---~~~~~~~----~~~~~  216 (464)
                      .||||+|+..|+.+++++|+++|||++.+|..|+||||+|+..            .+.+++   .+.....    .-.+.
T Consensus       176 ~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~  255 (743)
T TIGR00870       176 ESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH  255 (743)
T ss_pred             ccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC
Confidence            9999999999999999999999999999999999999999632            233333   1221111    23456


Q ss_pred             CCCCcccccCCCCcHHHHHHHHhC
Q psy6441         217 LPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       217 ~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      .+.||+++|+..++..+.+.++..
T Consensus       256 ~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       256 QGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             CCCCchhhhhhcCCccHHHHHHHH
Confidence            788999999999999999988753

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195|consensus

Probab=99.70  E-value=1.5e-17  Score=161.37  Aligned_cols=111  Identities=25%  Similarity=0.294  Sum_probs=104.7

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +..|.+||||||+.||..+|+.|+.. |+.+|..+....||||+|+..||.++|+.|++..+|+|+.+. .|.|||||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne-hgntplhyac  108 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE-HGNTPLHYAC  108 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc-cCCCchhhhh
Confidence            46899999999999999999999999 999999999899999999999999999999999999999976 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      .-|...+++-|+..||.+++.++.|.|||..|.
T Consensus       109 fwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  109 FWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            999999999999999999999999999999884

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.70  E-value=6.4e-17  Score=149.16  Aligned_cols=107  Identities=19%  Similarity=0.064  Sum_probs=97.8

Q ss_pred             hcCCCCCcchhhhhhcCChhh---hhcchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHH-CCCCcccccCCCCC
Q psy6441          82 SQMPDGHGSIVNGMENTHLNS---ARLPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVS-KGIDINAQHDMNGW  156 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~i---Vk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~-~Gadvn~~dd~~G~  156 (464)
                      ..+..|+||||+|+..|+.+.   +++|+.. |++++.++ ..|.||||+|+..|+.+++++|+. .|++++.++. .|+
T Consensus        52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-~g~  129 (166)
T PHA02743         52 RYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY-QHE  129 (166)
T ss_pred             ccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC-CCC
Confidence            446789999999999998765   7899988 99999998 589999999999999999999995 7999999954 999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy6441         157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET  190 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~T  190 (464)
                      ||||+|+..|+.+++++|+++|++++.++..|..
T Consensus       130 tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        130 TAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            9999999999999999999999999999988753

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.68  E-value=1.9e-16  Score=143.40  Aligned_cols=136  Identities=16%  Similarity=0.204  Sum_probs=106.9

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChh---hhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLN---SAR  104 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~---iVk  104 (464)
                      .+..+.++||+||+...+   ..+.....   ...  .         .....+...+..|.||||+|+..|+.+   +++
T Consensus        13 ~d~~g~tpLh~A~~~g~~---~~l~~~~~---~~~--~---------~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~   75 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV---TDLLAFKN---AIS--D---------ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLK   75 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH---HHHHHHHH---Hhc--c---------hhHHHHHHhcCCCCEEEEeecccCchhHHHHHH
Confidence            344588999999998763   12211100   000  0         001112234678999999999999874   578


Q ss_pred             cchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy6441         105 LPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       105 ~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin  182 (464)
                      +|++. |++++.++ ..|+||||+|+..|+.+++++|+.. |++++.++. .|+||||+|+..|+.+++++|+++||+.+
T Consensus        76 ~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         76 LLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-AFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            89988 99999998 5999999999999999999999984 999999954 99999999999999999999999999875

>KOG0502|consensus

Probab=99.67  E-value=5.6e-17  Score=152.32  Aligned_cols=139  Identities=19%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      ++|+.+++...+++++..+.+   ..+|..|+.|.|||.||+..|++++|++||+.||++++. .+...|+|.+|+..|.
T Consensus       130 ~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l-gk~resALsLAt~ggy  205 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL-GKYRESALSLATRGGY  205 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh-hhhhhhhHhHHhcCCh
Confidence            344444444444444443332   256777888888888888888888888888888888877 4466688888888888


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCc
Q psy6441         168 KDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLD  230 (464)
Q Consensus       168 ~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h  230 (464)
                      .+||++||.++.|+|..|++|-|||-||+   +-.+++.|...+......++.|.+++.+|...+.
T Consensus       206 tdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  206 TDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            88888888888888888888888888886   4466666655555445556666666666655443

>PHA02741 hypothetical protein; Provisional

Probab=99.67  E-value=2.6e-16  Score=145.33  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=106.1

Q ss_pred             ccccchhhhHHHHHHhcCCHHHHHHHHH------CCCCcccccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCC
Q psy6441         115 MDRVKYLEEQLREASCLGDFEAVCELVS------KGIDINAQHDMNGWTALHWAAKRGQ----KDIVSYLLKHGADKSLL  184 (464)
Q Consensus       115 ~~~d~~G~TpLh~Aa~~G~~eiVk~LL~------~Gadvn~~dd~~G~TpLH~Aa~~G~----~eiv~lLL~~GAdin~~  184 (464)
                      +.++..|.||||+|+..|+.+++++|+.      .|++++.+|. .|+||||+|+..|+    .+++++|+++|++++.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            3467889999999999999999999853      3688999965 99999999999999    58999999999999999


Q ss_pred             CC-CCCchhHhhc---cHHHHHHHhCCCCCc-ccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         185 TS-KEETPLALAT---KPEVRILLGGEPGVT-INTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       185 D~-~G~TPLh~A~---~~~i~~LL~~~~~~~-~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      +. .|+||||+|+   +.+++++|....+++ ...+..+.||+++|....+..+...|....
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            85 9999999996   568888875433333 445677899999999999999888877543

>KOG0512|consensus

Probab=99.67  E-value=1.6e-16  Score=144.53  Aligned_cols=143  Identities=24%  Similarity=0.240  Sum_probs=118.1

Q ss_pred             hhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhc
Q psy6441          60 TIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCL  131 (464)
Q Consensus        60 ~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~  131 (464)
                      ..++.-+.++....+.++..++..        +.+|.||||.|+.+||.++|+.|+.. |++++.+...||||||-||..
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcc
Confidence            344444455555555566555543        58999999999999999999999999 999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH-HHHHHHHH-CCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK-DIVSYLLK-HGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       132 G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~-eiv~lLL~-~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      .+.+++-+||++|+|||++.+ ..+||||+||...+. ..+++|+. .+.++-..+..+.||+.+|-+..+...|
T Consensus       141 nN~~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~l  214 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYL  214 (228)
T ss_pred             cchhHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHH
Confidence            999999999999999999954 788999999976654 56677766 5889999999999999999766544444

>KOG0505|consensus

Probab=99.65  E-value=1.3e-16  Score=165.69  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=126.4

Q ss_pred             hhhHHHHHHHhc-------CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCC
Q psy6441          72 TMFQEIELVLSQ-------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKG  144 (464)
Q Consensus        72 ~~~~ei~~ll~~-------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~G  144 (464)
                      ....++..++..       +.+|.|+||.||...+.++|++|++. |++++..|..||||||.|+..||..++++|+.+|
T Consensus        51 ~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~g  129 (527)
T KOG0505|consen   51 GDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHG  129 (527)
T ss_pred             ccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhh
Confidence            344555555543       36899999999999999999999999 9999999999999999999999999999999998


Q ss_pred             CCcccccC----------------------------------------------------------CCCCcHHHHHHHcC
Q psy6441         145 IDINAQHD----------------------------------------------------------MNGWTALHWAAKRG  166 (464)
Q Consensus       145 advn~~dd----------------------------------------------------------~~G~TpLH~Aa~~G  166 (464)
                      +++.+.+.                                                          ..|.|+||.|+.+|
T Consensus       130 A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~G  209 (527)
T KOG0505|consen  130 ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANG  209 (527)
T ss_pred             hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhh
Confidence            87544431                                                          23899999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCC
Q psy6441         167 QKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNE  227 (464)
Q Consensus       167 ~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~  227 (464)
                      ..++.++|+++|.+++++|.+||||||.|+   ..+++++|......-......+.+|+-++..
T Consensus       210 y~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  210 YTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999999999999997   4567777744433333344455566655533

>KOG0195|consensus

Probab=99.65  E-value=2.9e-16  Score=152.44  Aligned_cols=142  Identities=21%  Similarity=0.105  Sum_probs=120.5

Q ss_pred             hhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q psy6441          94 GMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSY  173 (464)
Q Consensus        94 Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~l  173 (464)
                      =|+.|+.--|+..|+...-+.|.-|..|.+||||||+.||..+|+.|+.+|+.+|..+. ...||||+|+..||.++|+.
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm-gddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM-GDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC-CCCcchhhhhhcccHHHHHH
Confidence            36778777788888876788999999999999999999999999999999999999854 66699999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         174 LLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       174 LL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      ||++.+|+|+.+..|.|||||||   ...|.+=|...+....-.++.|.||+..+.+++...+.+.
T Consensus        86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~  151 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEI  151 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHH
Confidence            99999999999999999999998   4567766655555445567778899998888776554443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.65  E-value=1.6e-15  Score=165.53  Aligned_cols=172  Identities=17%  Similarity=0.069  Sum_probs=132.7

Q ss_pred             hcCCCCCcchhhhhhcC---ChhhhhcchhhcCCCcccccchhhhHHHHHHhcC--CHHHHHHHHHCCCC--cccccCCC
Q psy6441          82 SQMPDGHGSIVNGMENT---HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLG--DFEAVCELVSKGID--INAQHDMN  154 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G---~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gad--vn~~dd~~  154 (464)
                      .++.+|+||||+|+..|   +.++|++|+++ |++++.+|..|+||||+|+..+  +.++|++|++.|++  ++..+. .
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~-~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN-I  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc-c
Confidence            45678999999999987   58999999999 9999999999999999999977  79999999999654  476633 6


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHH-CCCCCCCCCC-----CCCchhHhhc---cHHHHHHHhCCCCCcc--------cCC
Q psy6441         155 GWTALHWAAK--RGQKDIVSYLLK-HGADKSLLTS-----KEETPLALAT---KPEVRILLGGEPGVTI--------NTA  215 (464)
Q Consensus       155 G~TpLH~Aa~--~G~~eiv~lLL~-~GAdin~~D~-----~G~TPLh~A~---~~~i~~LL~~~~~~~~--------~~~  215 (464)
                      +++|||.++.  .++.+++++|+. .|+|++....     .|.+|+++|+   +.+|+++|...+....        ...
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDS  193 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccC
Confidence            8999999988  899999999997 6789886633     7899999996   5789998844332221        111


Q ss_pred             CCCCCccc---cc---CCCCcHHHHHHHHhCCCCCCCCCCCCCCCCc
Q psy6441         216 DLPIVPNY---IK---NEPLDPRVNDYQVSNQNRTHQTNPVTANQNV  256 (464)
Q Consensus       216 ~~~~tpl~---la---a~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~  256 (464)
                      ....|.++   ++   ......++++.|+++++....+. ..+.+|.
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd-~~G~TpL  239 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD-EGGSLPI  239 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC-CCCCCHH
Confidence            11112222   12   46667889999999998877666 5666665

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.64  E-value=2.6e-16  Score=176.45  Aligned_cols=176  Identities=20%  Similarity=0.160  Sum_probs=133.6

Q ss_pred             cCCChHhHHH-HHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhH---HHHHHHhc------------------CC
Q psy6441          28 TELTYYSLLN-ICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQ---EIELVLSQ------------------MP   85 (464)
Q Consensus        28 ~~l~~~~lL~-i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~---ei~~ll~~------------------~~   85 (464)
                      .+..++++|+ .|++....+..+.+..... ....+.+..+.+......   .+...+..                  ..
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  126 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSC-RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT  126 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCC-CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccC
Confidence            3456889999 7777777765555555443 344566777777763222   22222111                  13


Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCccccc--------------chhhhHHHHHHhcCCHHHHHHHHHCCCCccccc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV--------------KYLEEQLREASCLGDFEAVCELVSKGIDINAQH  151 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d--------------~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d  151 (464)
                      .|.||||+|+..|+.++|+.|++. |++++.++              ..|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            589999999999999999999999 99998653              368999999999999999999999999999996


Q ss_pred             CCCCCcHHHHHHHcC---------CHHHHHHHHHCCCCC-------CCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         152 DMNGWTALHWAAKRG---------QKDIVSYLLKHGADK-------SLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       152 d~~G~TpLH~Aa~~G---------~~eiv~lLL~~GAdi-------n~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      . .|+||||+|+..+         ...+.++++..++..       +..|.+|.||||+|+   +.+++++|.+
T Consensus       206 ~-~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       206 S-LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             h-hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            5 9999999999987         234667777766554       678999999999996   4567777643

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.63  E-value=3.9e-16  Score=167.19  Aligned_cols=161  Identities=22%  Similarity=0.120  Sum_probs=140.1

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      .++.+|.|+||.|+.+|+.++++.|++. .+-++..|..|.+|||+|++.|+.+++++|+.++..+|+.+. .|.||||.
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhl  121 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHL  121 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccch
Confidence            4456999999999999999999999998 888999999999999999999999999999999999999955 99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCC-C-------CcccCCCCCCCcccccCCCCc
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEP-G-------VTINTADLPIVPNYIKNEPLD  230 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~-~-------~~~~~~~~~~tpl~laa~~~h  230 (464)
                      |++.||.+++.+||++|+|+-++|..+.|+|.+|+   +.+++++|.... .       -.....-...+|+|+|+..+|
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            99999999999999999999999999999999997   456777763221 0       023344566789999999999


Q ss_pred             HHHHHHHHhCCCCC
Q psy6441         231 PRVNDYQVSNQNRT  244 (464)
Q Consensus       231 ~a~~~~l~sn~~~~  244 (464)
                      ..+++.++..+-..
T Consensus       202 ~~~~~~ll~ag~di  215 (854)
T KOG0507|consen  202 VECMQALLEAGFDI  215 (854)
T ss_pred             HHHHHHHHhcCCCc
Confidence            99999988665443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=3.4e-15  Score=126.41  Aligned_cols=119  Identities=36%  Similarity=0.434  Sum_probs=109.2

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +.+|.||||.|+..|+.+++++|+.. +.+.+..+..|.||||+|+..++.+++++|++.|++++..+ ..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHH
Confidence            35799999999999999999999999 88888999999999999999999999999999999999885 58999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHH
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILL  204 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL  204 (464)
                      ..++.+++++|+++|.+++..+..|.||+++|.   +.++.++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            999999999999999999999999999999996   34555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514|consensus

Probab=99.62  E-value=4.2e-15  Score=148.32  Aligned_cols=147  Identities=24%  Similarity=0.244  Sum_probs=120.6

Q ss_pred             cCCchhhhccchhHHHHhhhHHHHHHHh---------cCCCCCcchhhhhh-----cCChhhhhcchhhcCCCccccc-c
Q psy6441          55 RKLPNTIIRKDKDVARLTMFQEIELVLS---------QMPDGHGSIVNGME-----NTHLNSARLPFSVLGVSDMDRV-K  119 (464)
Q Consensus        55 ~~l~~~~~~~~~~~a~l~~~~ei~~ll~---------~~~~g~TpLh~Aa~-----~G~~~iVk~LL~~~ga~~~~~d-~  119 (464)
                      .++.+.-+.+.+|++......++...+.         ++.-|+||+++|+.     ..+..+|..|+..  .++|.+- .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhhhh
Confidence            3445555556666665544444444333         34789999999876     3567888888887  4777766 6


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchhHhh---
Q psy6441         120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALA---  195 (464)
Q Consensus       120 ~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~-GAdin~~D~~G~TPLh~A---  195 (464)
                      .|+|+|++|+.+|+.++|+.||..|||||.+|+ +|.|+|+.||..||.+|+++||.. ++|+...|.+|-|+|.+|   
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            899999999999999999999999999999987 999999999999999999999996 899999999999999998   


Q ss_pred             ccHHHHHHH
Q psy6441         196 TKPEVRILL  204 (464)
Q Consensus       196 ~~~~i~~LL  204 (464)
                      .+.+|.-+|
T Consensus       418 gh~eIa~ml  426 (452)
T KOG0514|consen  418 GHREIAVML  426 (452)
T ss_pred             CchHHHHHH
Confidence            477888888

>KOG4214|consensus

Probab=99.60  E-value=1.8e-15  Score=124.63  Aligned_cols=112  Identities=23%  Similarity=0.324  Sum_probs=103.3

Q ss_pred             chhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD  169 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~e  169 (464)
                      -+.|++++|.++.|+..+.. |.++|..- .|++|||+|+-+|..+++++|+..|++++.+ |+.|-|||.-|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~k-DKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDK-DKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCc-cccCCcHHHHHHHHhhHH
Confidence            46899999999999999998 87777655 8999999999999999999999999999999 569999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         170 IVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       170 iv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      +|++||+.|||-..+.-.|.+.+..+-+.+|.++|
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence            99999999999999989998888888788898887

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.56  E-value=2e-14  Score=144.63  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=97.7

Q ss_pred             ccccchhhh-HHHHHHhcCCHHHHHHHHHCCCCccccc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCC
Q psy6441         115 MDRVKYLEE-QLREASCLGDFEAVCELVSKGIDINAQH---DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL-TSKEE  189 (464)
Q Consensus       115 ~~~d~~G~T-pLh~Aa~~G~~eiVk~LL~~Gadvn~~d---d~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~-D~~G~  189 (464)
                      -.+|..|+| +||+|+..|+.+++++|+++|+++|.++   +..|.||||+|+..|+.+++++|+++|||++.+ +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            356666765 5677778899999999999999999873   348999999999999999999999999999996 46899


Q ss_pred             chhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHH
Q psy6441         190 TPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVND  235 (464)
Q Consensus       190 TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~  235 (464)
                      ||||+|+   +.+++++|...+......+..|.||++.|....+..+..
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~  154 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAF  154 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence            9999995   568888885444443456677889999887765555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.53  E-value=8.3e-14  Score=152.26  Aligned_cols=154  Identities=12%  Similarity=0.028  Sum_probs=110.0

Q ss_pred             CCCCcchhhhhhcC--ChhhhhcchhhcCCCc--ccccchhhhHHHHHHh--cCCHHHHHHHHH-CCCCcccccC----C
Q psy6441          85 PDGHGSIVNGMENT--HLNSARLPFSVLGVSD--MDRVKYLEEQLREASC--LGDFEAVCELVS-KGIDINAQHD----M  153 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G--~~~iVk~LL~~~ga~~--~~~d~~G~TpLh~Aa~--~G~~eiVk~LL~-~Gadvn~~dd----~  153 (464)
                      ..|+||||+|+..+  +.++|++|++. |++.  +..+..+.+|||.++.  .++.++|++|+. .+++++....    .
T Consensus        75 ~~G~TPLh~Aa~~~~~~~eIv~~Ll~~-~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~  153 (672)
T PHA02730         75 NEGLTPLGVYSKRKYVKSQIVHLLISS-YSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHC  153 (672)
T ss_pred             CCCCChHHHHHHcCCCcHHHHHHHHhc-CCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccc
Confidence            57888888888866  68888888887 5544  6666667888887777  778888888886 5677765522    2


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCC-------CCCCCCC-chhHhh---------ccHHHHHHHhCCCCCcccCCC
Q psy6441         154 NGWTALHWAAKRGQKDIVSYLLKHGADKS-------LLTSKEE-TPLALA---------TKPEVRILLGGEPGVTINTAD  216 (464)
Q Consensus       154 ~G~TpLH~Aa~~G~~eiv~lLL~~GAdin-------~~D~~G~-TPLh~A---------~~~~i~~LL~~~~~~~~~~~~  216 (464)
                      .|.+|+++|+..++.++|++|+++||+++       ..+..+. |.||++         ...+++++|...+..-+..+.
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~  233 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE  233 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC
Confidence            67788888888888888888888888884       2333444 344433         145788888655544466777


Q ss_pred             CCCCccc--ccCCCCcHHHHHHHHh
Q psy6441         217 LPIVPNY--IKNEPLDPRVNDYQVS  239 (464)
Q Consensus       217 ~~~tpl~--laa~~~h~a~~~~l~s  239 (464)
                      .|.||+|  .++..++.+++++|++
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHh
Confidence            8888886  4666677888888886

>PHA02792 ankyrin-like protein; Provisional

Probab=99.52  E-value=3.9e-14  Score=153.50  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=90.4

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCcccccchh--hhHHHHHHhcCCH---HHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYL--EEQLREASCLGDF---EAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G--~TpLh~Aa~~G~~---eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ...+++.|+..|+.++|++|+++ |++++.+|..|  .||||+|+.....   +++++|+++|+++|.+|. .|+||||+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~-~G~TPLh~  416 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDK-HGRSILYY  416 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccc-cCcchHHH
Confidence            44567888888999999999998 99998888664  6889887776654   357888899999998854 89999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      |+..++.+++++|+++||+++.+|..|+||||+|.
T Consensus       417 Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        417 CIESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999884

>KOG0505|consensus

Probab=99.51  E-value=2.6e-14  Score=148.83  Aligned_cols=156  Identities=25%  Similarity=0.220  Sum_probs=123.1

Q ss_pred             hhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHH
Q psy6441          91 IVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI  170 (464)
Q Consensus        91 Lh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~ei  170 (464)
                      +.-|+..|.++-|..|+.. |++++..+.+|.|+||.+|...+.+||++|+++|++||..|. .||||||.|+..||..+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccccHHH
Confidence            4568899999999999999 899999999999999999999999999999999999999965 99999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCC-----------------------------------------------------------ch
Q psy6441         171 VSYLLKHGADKSLLTSKEE-----------------------------------------------------------TP  191 (464)
Q Consensus       171 v~lLL~~GAdin~~D~~G~-----------------------------------------------------------TP  191 (464)
                      +++|+++||++.+.+..|.                                                           |+
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            9999999988755444444                                                           44


Q ss_pred             hHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         192 LALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       192 Lh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      ||.|+   ..++.++|...+......+..+|+|+|.++..++..+.+.|+.++..-....
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence            45443   3355555543333334456667777777777777777776666655544444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=8.3e-14  Score=114.15  Aligned_cols=77  Identities=40%  Similarity=0.485  Sum_probs=70.2

Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHH
Q psy6441         125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVR  201 (464)
Q Consensus       125 Lh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~  201 (464)
                      ||+|++.|+.+++++|++.+++++.     |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+   +.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7999999999999999999988875     889999999999999999999999999999999999999996   56788


Q ss_pred             HHHhC
Q psy6441         202 ILLGG  206 (464)
Q Consensus       202 ~LL~~  206 (464)
                      ++|..
T Consensus        76 ~~Ll~   80 (89)
T PF12796_consen   76 KLLLE   80 (89)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88743

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=6.8e-14  Score=129.87  Aligned_cols=119  Identities=29%  Similarity=0.308  Sum_probs=108.0

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC-----HHHHHHHHHCCC---CcccccCCCCC
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD-----FEAVCELVSKGI---DINAQHDMNGW  156 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~-----~eiVk~LL~~Ga---dvn~~dd~~G~  156 (464)
                      ..+.+++|.++..+...++++++.. +++++.++..|.||||+|+..|+     .+++++|++.|+   ..+.+ +..|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~-~~~g~  148 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR-DEDGN  148 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc-CCCCC
Confidence            3488999999999999999999999 99999999999999999999999     999999999999   44455 45999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       157 TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      ||||||+..|+.+++++|++.|++++.++..|.|++++|+   +..+...+.
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHH
Confidence            9999999999999999999999999999999999999997   445666653

>PHA02792 ankyrin-like protein; Provisional

Probab=99.48  E-value=1.8e-13  Score=148.37  Aligned_cols=121  Identities=20%  Similarity=0.163  Sum_probs=106.2

Q ss_pred             CCCCcchhh-hhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHh-cCCHHHHHHHHHCCCCccc-------------
Q psy6441          85 PDGHGSIVN-GMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASC-LGDFEAVCELVSKGIDINA-------------  149 (464)
Q Consensus        85 ~~g~TpLh~-Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~-~G~~eiVk~LL~~Gadvn~-------------  149 (464)
                      -+|.+++|. |+..|++++|++|+.+ |++++.++..|.||||+|+. .++.+++++|+++||++++             
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            578889986 6778999999999999 99999999999999999965 6999999999999987432             


Q ss_pred             ----------------------ccCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCCchhHhhc----
Q psy6441         150 ----------------------QHDMNGWTALHWAAKRG-------QKDIVSYLLKHGADKSLLTSKEETPLALAT----  196 (464)
Q Consensus       150 ----------------------~dd~~G~TpLH~Aa~~G-------~~eiv~lLL~~GAdin~~D~~G~TPLh~A~----  196 (464)
                                            -++..|.||||+|+..+       +.+++++|+.+||+++.+|..|.||||+|.    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                                  11346999999999999       899999999999999999999999999994    


Q ss_pred             -cHHHHHHHhC
Q psy6441         197 -KPEVRILLGG  206 (464)
Q Consensus       197 -~~~i~~LL~~  206 (464)
                       +.+++++|..
T Consensus       228 i~~ei~~~L~~  238 (631)
T PHA02792        228 IKREIFDALFD  238 (631)
T ss_pred             chHHHHHHHHh
Confidence             4578888843

>KOG0507|consensus

Probab=99.47  E-value=6.8e-14  Score=150.22  Aligned_cols=193  Identities=21%  Similarity=0.116  Sum_probs=147.6

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      ++.++.+++|-+|-+........++....   ++..-.....+.++..+..++...+..        ...|.||||.|++
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence            55688999999999998875555544332   444444566778887777777654432        2578999999999


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCc-------ccccCCCCCcHHHHHHHcCCHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDI-------NAQHDMNGWTALHWAAKRGQKD  169 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadv-------n~~dd~~G~TpLH~Aa~~G~~e  169 (464)
                      +||.++|.+|+.+ |+++-.++..+.|+|-.|++.|..++|+.|++....+       .......+.+|||.|+++||.+
T Consensus       125 hgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~  203 (854)
T KOG0507|consen  125 HGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVE  203 (854)
T ss_pred             hcchHHHHHHHhc-CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHH
Confidence            9999999999999 9999999999999999999999999999998763221       1112356889999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcc
Q psy6441         170 IVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPN  222 (464)
Q Consensus       170 iv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl  222 (464)
                      +++.|++.|.|+|.....| |+||-|+   ..+++.+|..-+......+..+.|.+
T Consensus       204 ~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtal  258 (854)
T KOG0507|consen  204 CMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTAL  258 (854)
T ss_pred             HHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHH
Confidence            9999999999999988877 8999985   56777777443333333344444544

>KOG3676|consensus

Probab=99.45  E-value=1.4e-13  Score=149.33  Aligned_cols=157  Identities=22%  Similarity=0.164  Sum_probs=125.0

Q ss_pred             CCCCCcchhhhhh---cCChhhhhcchhhcCCCccc---c-cchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC----
Q psy6441          84 MPDGHGSIVNGME---NTHLNSARLPFSVLGVSDMD---R-VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD----  152 (464)
Q Consensus        84 ~~~g~TpLh~Aa~---~G~~~iVk~LL~~~ga~~~~---~-d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd----  152 (464)
                      ...|.|.||.|.-   .++-++++.|++...--+|.   . ...|+||||.|+.+.+.++|++|++.||||+++..    
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            5689999999876   56678899998863322222   2 25799999999999999999999999999987621    


Q ss_pred             ------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc---HHHHHHHh-CCCC-
Q psy6441         153 ------------------MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLG-GEPG-  209 (464)
Q Consensus       153 ------------------~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~---~~i~~LL~-~~~~-  209 (464)
                                        +.|..||.+||..++.+|+++|+++|||++++|.+|+|.||...-   .++..++. .++. 
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                              247899999999999999999999999999999999999998852   34444442 2222 


Q ss_pred             CcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         210 VTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       210 ~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ...-.+..+.||+.+|+.-+..++-+.+++.
T Consensus       300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            1355667789999999999999988887755

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.3e-13  Score=104.51  Aligned_cols=55  Identities=44%  Similarity=0.726  Sum_probs=30.6

Q ss_pred             HHHCC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhh
Q psy6441         140 LVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA  195 (464)
Q Consensus       140 LL~~G-advn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A  195 (464)
                      ||++| ++++.+|. .|.||||+||.+|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T-TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88888854 899999999999999999999988999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=2.7e-13  Score=150.39  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=98.1

Q ss_pred             chhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKD  169 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~e  169 (464)
                      .|+.|+..|+.+.++.|++. |++++.+|..|+||||+||..|+.+++++|+++|++++.+|. .|+||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-DGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHH
Confidence            48899999999999999998 999999999999999999999999999999999999999955 9999999999999999


Q ss_pred             HHHHHHHC-------CCCCCCCCCCCCchhHhhc
Q psy6441         170 IVSYLLKH-------GADKSLLTSKEETPLALAT  196 (464)
Q Consensus       170 iv~lLL~~-------GAdin~~D~~G~TPLh~A~  196 (464)
                      ++++|+.+       |++++..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999       8999999999998887664

>KOG3676|consensus

Probab=99.40  E-value=7e-13  Score=143.92  Aligned_cols=111  Identities=29%  Similarity=0.332  Sum_probs=102.8

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCccccc-----------------------chhhhHHHHHHhcCCHHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-----------------------KYLEEQLREASCLGDFEAVCELV  141 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-----------------------~~G~TpLh~Aa~~G~~eiVk~LL  141 (464)
                      ..|.||||+|+.+.+.++|++|++. |||++++-                       ..|+.||.+||+.++.+++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            5899999999999999999999999 99986432                       25788999999999999999999


Q ss_pred             HCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCchhHhhcc
Q psy6441         142 SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD--KSLLTSKEETPLALATK  197 (464)
Q Consensus       142 ~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd--in~~D~~G~TPLh~A~~  197 (464)
                      ++|||++++|. .|+|.||..+..-..++..++|++|++  ...+|..|.|||.+|+.
T Consensus       261 ~~gAd~~aqDS-~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  261 AHGADPNAQDS-NGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             hcCCCCCcccc-CCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence            99999999966 999999999999999999999999999  88999999999999973

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.40  E-value=2.6e-12  Score=108.65  Aligned_cols=120  Identities=30%  Similarity=0.297  Sum_probs=99.8

Q ss_pred             ccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         117 RVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       117 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      .+..|.||||+|+..|+.+++++|++.|++.+..+ ..|.||||+|+..++.+++++|+..|++++..+..|.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            45689999999999999999999999999987774 49999999999999999999999999999999999999999996


Q ss_pred             ---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         197 ---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       197 ---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                         +.+++++|..........+..+.+|++.+....+..+.+++
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence               46788888554433344456667888887776666665543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0515|consensus

Probab=99.39  E-value=4.8e-13  Score=138.60  Aligned_cols=112  Identities=23%  Similarity=0.263  Sum_probs=99.2

Q ss_pred             hhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHH
Q psy6441          91 IVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI  170 (464)
Q Consensus        91 Lh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~ei  170 (464)
                      |.-|+..|-+++|+..+.. --|+...+..|-|+||-|++.||.+||++|++.|++||+.|. +||||||+|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhhhhhhcCchHH
Confidence            4558999999999999998 778888999999999999999999999999999999999966 99999999999999999


Q ss_pred             HHHHHHCCCCCCCCC-CCCCchhHhhc-----cHHHHHHH
Q psy6441         171 VSYLLKHGADKSLLT-SKEETPLALAT-----KPEVRILL  204 (464)
Q Consensus       171 v~lLL~~GAdin~~D-~~G~TPLh~A~-----~~~i~~LL  204 (464)
                      ++.|++.||.+-+.. .++.||..-+-     ...+.++|
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            999999998776544 46788888763     34677777

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.34  E-value=1.7e-12  Score=97.26  Aligned_cols=54  Identities=46%  Similarity=0.634  Sum_probs=44.8

Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy6441         121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL  175 (464)
Q Consensus       121 G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL  175 (464)
                      |+||||+||+.|+.+++++|+++|+++|.+|. +|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~-~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE-DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence            67999999999999999999999999999954 9999999999999999999986

...

>KOG1710|consensus

Probab=99.31  E-value=3.7e-12  Score=124.10  Aligned_cols=118  Identities=22%  Similarity=0.255  Sum_probs=108.7

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      .-..+|..++..|..+.+..||.. .-++|.+|..|+++|..|+..|+.++|++||+.|+|+|...+..+.||||+|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            456788999999999999999987 6669999999999999999999999999999999999987677899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHH
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILL  204 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL  204 (464)
                      |+.++.++|++.||.+...+.-|+|+..+|+   +.+++..+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999999999999999999996   66777777

>KOG4369|consensus

Probab=99.29  E-value=2.5e-12  Score=141.85  Aligned_cols=161  Identities=21%  Similarity=0.193  Sum_probs=139.4

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      .+-.|+|-.||..||.+.|.+|+.. |+++..+|+.|.+||.+|+..||..+|+.|+.+.++++++.|+.+.|+|.+||.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh-cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            4667999999999999999999999 999999999999999999999999999999999999999989999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh-CCCCCc-ccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG-GEPGVT-INTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~-~~~~~~-~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      .|..++|++||.+||+-..++-...|||.+|.   ...|+.+|. .+..+. ....+.++.|+.++...+|-+....++.
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            99999999999999999999999999999995   456666663 343444 3345678899999999999998888776


Q ss_pred             CCCCCCC
Q psy6441         240 NQNRTHQ  246 (464)
Q Consensus       240 n~~~~~~  246 (464)
                      .++.-..
T Consensus       914 ~gsdiNa  920 (2131)
T KOG4369|consen  914 PGSDINA  920 (2131)
T ss_pred             ccchhcc
Confidence            6544333

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=2.3e-12  Score=97.62  Aligned_cols=56  Identities=30%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             chhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441         106 PFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus       106 LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      ||+...++++.+|..|.||||+||.+|+.+++++|++.|++++.+|. .|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK-DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence            46662389999999999999999999999999999999999999965 999999997

>KOG4369|consensus

Probab=99.27  E-value=4.9e-12  Score=139.52  Aligned_cols=223  Identities=17%  Similarity=0.112  Sum_probs=173.1

Q ss_pred             hhcccccCCChHhHHHHHHHhcCCCCHHHHHHhcCCchh---hhccchhHHHHhhhHHHHHHH---------hcCCCCCc
Q psy6441          22 IELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNT---IIRKDKDVARLTMFQEIELVL---------SQMPDGHG   89 (464)
Q Consensus        22 vei~rl~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~---~~~~~~~~a~l~~~~ei~~ll---------~~~~~g~T   89 (464)
                      ..|+-+.+-+.+..|-++|...+-+..+.++....-..+   .....+-.++..++..+..++         ..+..+.|
T Consensus       747 ~~id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt  826 (2131)
T KOG4369|consen  747 TVIDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDT  826 (2131)
T ss_pred             eeeccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCc
Confidence            345555778888999999998888877766665321111   111222223333332222222         23578999


Q ss_pred             chhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc-CCCCCcHHHHHHHcCCH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH-DMNGWTALHWAAKRGQK  168 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d-d~~G~TpLH~Aa~~G~~  168 (464)
                      +|.+||.-|..++|..||.. |++-..++-...|||.+|...|..++|..|+..|+.+|.+. .+.|..||++|+.+||.
T Consensus       827 ~lSlacsggr~~vvelLl~~-gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNA-GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHh-hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            99999999999999999999 99999999999999999999999999999999999999763 35788999999999999


Q ss_pred             HHHHHHHHCCCCCCCC-CCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCC
Q psy6441         169 DIVSYLLKHGADKSLL-TSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRT  244 (464)
Q Consensus       169 eiv~lLL~~GAdin~~-D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~  244 (464)
                      +.++.||+.|.|+|+. ..+-+|+|.+|+   +.+++.+|.+.......+...|+||++-.+..+-+++-..|+..++..
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            9999999999999976 456789999996   678888886655555667788999999999999988888888776654


Q ss_pred             C
Q psy6441         245 H  245 (464)
Q Consensus       245 ~  245 (464)
                      .
T Consensus       986 n  986 (2131)
T KOG4369|consen  986 N  986 (2131)
T ss_pred             c
Confidence            3

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=8.4e-11  Score=109.03  Aligned_cols=129  Identities=22%  Similarity=0.188  Sum_probs=108.5

Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCC
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ-----KDIVSYLLKHGA---DKSL  183 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~-----~eiv~lLL~~GA---din~  183 (464)
                      ......+..+.+++|+|+..+...++++|+..|++++.++ ..|.||||+|+..|+     .+++++|++.|+   +.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc-CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            3344566678999999999999999999999999998885 599999999999999     999999999999   6667


Q ss_pred             CCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         184 LTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       184 ~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      +|..|+||||+|+   +..++++|...+......+..+.|+++.+....+..+...+....
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7999999999996   456777765544444445778889999999999999888777543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=5.3e-11  Score=132.21  Aligned_cols=85  Identities=35%  Similarity=0.451  Sum_probs=78.2

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cH
Q psy6441         122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KP  198 (464)
Q Consensus       122 ~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~  198 (464)
                      .+.|+.|+..|+.+++++|++.|+++|.+|. .|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+   +.
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDY-DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            3569999999999999999999999999954 9999999999999999999999999999999999999999996   56


Q ss_pred             HHHHHHhCC
Q psy6441         199 EVRILLGGE  207 (464)
Q Consensus       199 ~i~~LL~~~  207 (464)
                      +++++|...
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            888888544

>KOG4214|consensus

Probab=99.17  E-value=6.3e-11  Score=97.98  Aligned_cols=94  Identities=26%  Similarity=0.262  Sum_probs=80.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHH
Q psy6441         123 EQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPE  199 (464)
Q Consensus       123 TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~  199 (464)
                      --+.|+.++|..+-|+..+..|.++|..  ..|+||||+|+-+|..++++||+..||+++.+|+.|-|||--|.   +..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            3578999999999999999999999977  48999999999999999999999999999999999999999885   678


Q ss_pred             HHHHHhCCCCCcccCCCCC
Q psy6441         200 VRILLGGEPGVTINTADLP  218 (464)
Q Consensus       200 i~~LL~~~~~~~~~~~~~~  218 (464)
                      ++++|...+.........|
T Consensus        82 cVklLL~~GAdrt~~~PdG  100 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDG  100 (117)
T ss_pred             HHHHHHHcCcccceeCCCc
Confidence            8888865554443333333

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.16  E-value=2.5e-11  Score=90.90  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHH
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELV  141 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL  141 (464)
                      |+||||+|++.|+.+++++|++. |.+++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999 9999999999999999999999999999996

...

>KOG0515|consensus

Probab=99.03  E-value=2.7e-10  Score=118.48  Aligned_cols=92  Identities=16%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH-
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA-  162 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A-  162 (464)
                      +.+|.|+||.|+..||+++|++|++. |+++|..|.+||||||+||..++..+++.|++.|+-|-+..-.++.||.--+ 
T Consensus       580 NdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  580 NDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             CccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcc
Confidence            36899999999999999999999999 9999999999999999999999999999999999988776555788887665 


Q ss_pred             -HHcCCHHHHHHHHH
Q psy6441         163 -AKRGQKDIVSYLLK  176 (464)
Q Consensus       163 -a~~G~~eiv~lLL~  176 (464)
                       -..|+.+|.+||..
T Consensus       659 e~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  659 EMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhhHHHHHHHHHH
Confidence             35688899999864

>KOG1710|consensus

Probab=98.98  E-value=1.4e-09  Score=106.38  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=92.7

Q ss_pred             HHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHHCCCCcc
Q psy6441          70 RLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVSKGIDIN  148 (464)
Q Consensus        70 ~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn  148 (464)
                      +...+..+..+...|..|.++|..|+..|+.++|+.||+. |+|+|... ..+.||||+||..|+.++.++|++.|+...
T Consensus        28 a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~  106 (396)
T KOG1710|consen   28 ALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMY  106 (396)
T ss_pred             HHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccc
Confidence            3334445666778899999999999999999999999999 99998754 789999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy6441         149 AQHDMNGWTALHWAAKRGQKDIVSYLL  175 (464)
Q Consensus       149 ~~dd~~G~TpLH~Aa~~G~~eiv~lLL  175 (464)
                      ..|. -|+|+-.+|+.-||-++|..+-
T Consensus       107 ~vNs-vgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  107 LVNS-VGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cccc-hhhhHHHHHHHhcchHHHHHHh
Confidence            9966 8999999999999999988763

>KOG0783|consensus

Probab=98.83  E-value=1.5e-09  Score=117.80  Aligned_cols=87  Identities=25%  Similarity=0.288  Sum_probs=79.8

Q ss_pred             CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy6441         111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET  190 (464)
Q Consensus       111 ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~T  190 (464)
                      +--.+.+|..|+|+||+|+..+..+++++||++|++++.+|...||||||-|..+|+++++-+||.+|+...++|+.|..
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegls  121 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLS  121 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCC
Confidence            33467889999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             hhHhhcc
Q psy6441         191 PLALATK  197 (464)
Q Consensus       191 PLh~A~~  197 (464)
                      ||..-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            9997753

>PF13606 Ank_3: Ankyrin repeat

Probab=98.72  E-value=1.6e-08  Score=66.96  Aligned_cols=30  Identities=57%  Similarity=0.824  Sum_probs=25.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy6441         154 NGWTALHWAAKRGQKDIVSYLLKHGADKSL  183 (464)
Q Consensus       154 ~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~  183 (464)
                      +|+||||+||..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888863

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.68  E-value=2.8e-08  Score=66.95  Aligned_cols=33  Identities=55%  Similarity=0.805  Sum_probs=27.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy6441         154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS  186 (464)
Q Consensus       154 ~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~  186 (464)
                      +|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478888888888888888888888888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.53  E-value=2.2e-07  Score=96.50  Aligned_cols=74  Identities=35%  Similarity=0.360  Sum_probs=70.0

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhh
Q psy6441         122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA  195 (464)
Q Consensus       122 ~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A  195 (464)
                      ..-||..++.|+.+..-.||..||++|..+...|.||||.|++.|+.--+++|+-+|||+++.|.+|.||+.||
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHH
Confidence            34599999999999999999999999998777899999999999999999999999999999999999999999

>KOG0506|consensus

Probab=98.49  E-value=1.1e-07  Score=98.38  Aligned_cols=86  Identities=30%  Similarity=0.363  Sum_probs=79.0

Q ss_pred             chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchhHhhc-
Q psy6441         119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALAT-  196 (464)
Q Consensus       119 ~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~-GAdin~~D~~G~TPLh~A~-  196 (464)
                      .++.-++++|++.|+...++.+.-.|.|++.+ |++.+|+||.||..|+.+++++|++. +.+++.+|.+|+|||.-|. 
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccccccc-ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            35567899999999999999999999999998 56999999999999999999999995 8999999999999999995 


Q ss_pred             --cHHHHHHHh
Q psy6441         197 --KPEVRILLG  205 (464)
Q Consensus       197 --~~~i~~LL~  205 (464)
                        +.+++++|.
T Consensus       583 F~h~~v~k~L~  593 (622)
T KOG0506|consen  583 FKHKEVVKLLE  593 (622)
T ss_pred             cCcHHHHHHHH
Confidence              789999994

>KOG0818|consensus

Probab=98.47  E-value=2.2e-07  Score=96.54  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=77.5

Q ss_pred             chhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      -||..++.|+.++.-.||.. |+++|..+ ..|.||||.|++.|+..-+++|+-+|||+++.|. +|+||+.+|-..||-
T Consensus       136 QLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~-~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS-SGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC-CCCcHHHHHHhcCch
Confidence            48999999999999999998 99999988 7899999999999999999999999999999965 999999999999998


Q ss_pred             HHHHHHH
Q psy6441         169 DIVSYLL  175 (464)
Q Consensus       169 eiv~lLL  175 (464)
                      ++.+-|+
T Consensus       214 ~laeRl~  220 (669)
T KOG0818|consen  214 ELAERLV  220 (669)
T ss_pred             HHHHHHH
Confidence            8776665

>KOG0506|consensus

Probab=98.47  E-value=8.6e-08  Score=99.14  Aligned_cols=92  Identities=21%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      .++...+++|+..|++..++.+.-. |.+++.+|.+.+|+||.||..|+.+++++|++. +.+++.+| ++|+|||--|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD-Rw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD-RWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh-ccCCCcchHhH
Confidence            4566789999999999999999888 999999999999999999999999999999987 89999995 59999999999


Q ss_pred             HcCCHHHHHHHHHCC
Q psy6441         164 KRGQKDIVSYLLKHG  178 (464)
Q Consensus       164 ~~G~~eiv~lLL~~G  178 (464)
                      ..+|.+++++|-+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999999998753

>PF13606 Ank_3: Ankyrin repeat

Probab=98.45  E-value=1.6e-07  Score=62.21  Aligned_cols=30  Identities=33%  Similarity=0.380  Sum_probs=27.3

Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHCCCCccc
Q psy6441         120 YLEEQLREASCLGDFEAVCELVSKGIDINA  149 (464)
Q Consensus       120 ~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~  149 (464)
                      +|+||||+||+.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.43  E-value=2.5e-07  Score=62.24  Aligned_cols=32  Identities=31%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHCCCCccccc
Q psy6441         120 YLEEQLREASCLGDFEAVCELVSKGIDINAQH  151 (464)
Q Consensus       120 ~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d  151 (464)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            48899999999999999999999999999885

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.40  E-value=2.7e-07  Score=100.74  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             HHhcCCCCCcchhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          80 VLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        80 ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      ....|.-|+|+||+|+..|..+++++||++ |++++.+| ..|+||||.|..+|+++++-+||.+|+.+..+| ++|..|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D-keglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD-KEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec-ccCCCH
Confidence            344567899999999999999999999999 99999999 679999999999999999999999999999995 599999


Q ss_pred             HHHHHHc
Q psy6441         159 LHWAAKR  165 (464)
Q Consensus       159 LH~Aa~~  165 (464)
                      |.+-++-
T Consensus       123 lq~~~r~  129 (1267)
T KOG0783|consen  123 LQFLSRV  129 (1267)
T ss_pred             HHHHhhc
Confidence            9988773

>KOG0705|consensus

Probab=98.35  E-value=4.9e-07  Score=95.46  Aligned_cols=83  Identities=28%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCc--cc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---c
Q psy6441         124 QLREASCLGDFEAVCELVSKGIDI--NA-QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---K  197 (464)
Q Consensus       124 pLh~Aa~~G~~eiVk~LL~~Gadv--n~-~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~  197 (464)
                      -|..|+...+...+-+||.+|...  |. ..+.+|+|+||+||..|+..+.++|+-+|+|+.++|.+|+|||.||-   .
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            355566666666666777766432  21 12235677777777777777777777777777777777777777773   3


Q ss_pred             HHHHHHHhC
Q psy6441         198 PEVRILLGG  206 (464)
Q Consensus       198 ~~i~~LL~~  206 (464)
                      .++..+|..
T Consensus       707 qec~d~llq  715 (749)
T KOG0705|consen  707 QECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHH
Confidence            456665543

>KOG0782|consensus

Probab=98.34  E-value=8.7e-07  Score=93.28  Aligned_cols=115  Identities=23%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             hhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCC--cccccCCCCCcHHHHHHHcCCHH
Q psy6441          92 VNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID--INAQHDMNGWTALHWAAKRGQKD  169 (464)
Q Consensus        92 h~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gad--vn~~dd~~G~TpLH~Aa~~G~~e  169 (464)
                      ..|+..+++--+..+... |.++..++.+..+.||+|+..|+-++|+|+|++|..  ++..+. .|.|+||-|+..++..
T Consensus       871 l~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de-~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE-TGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHHhcchH
Confidence            445555555444555555 778888888899999999999999999999999864  455544 8999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCchhHhh---ccHHHHHHHhCCC
Q psy6441         170 IVSYLLKHGADKSLLTSKEETPLALA---TKPEVRILLGGEP  208 (464)
Q Consensus       170 iv~lLL~~GAdin~~D~~G~TPLh~A---~~~~i~~LL~~~~  208 (464)
                      +.++|++.||.+...|..|.||-.-|   ...+...+|+...
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999999998877   3667888885433

>KOG0522|consensus

Probab=98.26  E-value=1.3e-06  Score=91.80  Aligned_cols=87  Identities=24%  Similarity=0.322  Sum_probs=71.6

Q ss_pred             cchhhhhhcCChhhhhc-chhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          89 GSIVNGMENTHLNSARL-PFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~-LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      -|||+++.....+-... |....+..++.+|..|.||||+|+..|+...++.|+.+|+++-.+|. .||+|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~-~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN-EGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc-ccccHHHHHHHcCC
Confidence            45888888776655544 33334667888999999999999999999999999999999999965 99999999999999


Q ss_pred             HHHHHHHHH
Q psy6441         168 KDIVSYLLK  176 (464)
Q Consensus       168 ~eiv~lLL~  176 (464)
                      .+++..+|.
T Consensus       101 ~q~i~~vlr  109 (560)
T KOG0522|consen  101 EQIITEVLR  109 (560)
T ss_pred             HHHHHHHHH
Confidence            887766664

>KOG0511|consensus

Probab=98.22  E-value=3.6e-06  Score=85.34  Aligned_cols=80  Identities=31%  Similarity=0.307  Sum_probs=68.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHH
Q psy6441         124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRIL  203 (464)
Q Consensus       124 pLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~L  203 (464)
                      -|..||+.|..+.|++|++.|.++|++| ....+||.+|+..||.++|++||++||-.+.-...|..++.-|-+..|.++
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD-~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd~IR~m  117 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVD-RFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALNDRIRRM  117 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhh-cccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhHHHHHH
Confidence            4899999999999999999999999995 488899999999999999999999999766656678777666667777766


Q ss_pred             H
Q psy6441         204 L  204 (464)
Q Consensus       204 L  204 (464)
                      |
T Consensus       118 l  118 (516)
T KOG0511|consen  118 L  118 (516)
T ss_pred             H
Confidence            6

>KOG0705|consensus

Probab=98.10  E-value=1.4e-05  Score=84.83  Aligned_cols=89  Identities=22%  Similarity=0.302  Sum_probs=77.3

Q ss_pred             hhhhhhcCChhhhhcchhhcCCCc----ccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcC
Q psy6441          91 IVNGMENTHLNSARLPFSVLGVSD----MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        91 Lh~Aa~~G~~~iVk~LL~~~ga~~----~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      |.-|+...++..+-.||.+ |...    ...+.+|+|+||+||+.|+..+.++|+.+|+|+.++|. .|+|||.||-+.|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a~  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhcc
Confidence            5667778888888888887 5432    23446789999999999999999999999999999965 9999999999999


Q ss_pred             CHHHHHHHHHCCCCC
Q psy6441         167 QKDIVSYLLKHGADK  181 (464)
Q Consensus       167 ~~eiv~lLL~~GAdi  181 (464)
                      .-+|+..||++|+-.
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999999854

>KOG0782|consensus

Probab=98.06  E-value=3.5e-06  Score=88.88  Aligned_cols=95  Identities=21%  Similarity=0.210  Sum_probs=84.5

Q ss_pred             HhcCCCCCcchhhhhhcCChhhhhcchhhcCCC--cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          81 LSQMPDGHGSIVNGMENTHLNSARLPFSVLGVS--DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        81 l~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~--~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      +.++.+..+.||+|+..|+-++|+++|++ |..  ++..|..|+|+||.|+..++..++++|++.|+.+-..|. .|.||
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh-~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~-kg~tp  970 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDH-GPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDS-KGKTP  970 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhc-CCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheeccc-CCCCh
Confidence            44457788999999999999999999999 433  567789999999999999999999999999999988855 99999


Q ss_pred             HHHHHHcCCHHHHHHHHHC
Q psy6441         159 LHWAAKRGQKDIVSYLLKH  177 (464)
Q Consensus       159 LH~Aa~~G~~eiv~lLL~~  177 (464)
                      -.-|-+.|..++..||-.+
T Consensus       971 ~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  971 QERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcCCchHHHHHhhh
Confidence            9999999999999998654

>KOG0522|consensus

Probab=98.01  E-value=9.5e-06  Score=85.48  Aligned_cols=73  Identities=27%  Similarity=0.329  Sum_probs=62.2

Q ss_pred             hHHHHHHhcCCHHHHHHHH--HCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         123 EQLREASCLGDFEAVCELV--SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       123 TpLh~Aa~~G~~eiVk~LL--~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      -|||+++.....+-...++  +.+..++.. |..|.||||+|+..||.+.++.|+.+||++..+|..||+|||-|.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH
Confidence            4699999888776555433  335677777 458999999999999999999999999999999999999999994

>KOG0521|consensus

Probab=97.98  E-value=7.7e-06  Score=92.00  Aligned_cols=85  Identities=34%  Similarity=0.445  Sum_probs=77.2

Q ss_pred             chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc--
Q psy6441         119 KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT--  196 (464)
Q Consensus       119 ~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~--  196 (464)
                      ..|.|+||.|+..|..-++++|+++|+++|..+. .|+||||.+...|+...+..|+++||+.++.|..|.+||++|.  
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~-~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS-KGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhc-cCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            5679999999999999999999999999999955 9999999999999999999999999999999999999999993  


Q ss_pred             -cHHHHHHH
Q psy6441         197 -KPEVRILL  204 (464)
Q Consensus       197 -~~~i~~LL  204 (464)
                       +..++-+|
T Consensus       733 ~~~d~~~l~  741 (785)
T KOG0521|consen  733 ANADIVLLL  741 (785)
T ss_pred             ccccHHHHH
Confidence             44444444

>KOG2384|consensus

Probab=97.90  E-value=5.8e-05  Score=70.50  Aligned_cols=74  Identities=22%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy6441         111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT  185 (464)
Q Consensus       111 ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~G-advn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D  185 (464)
                      +.++|.+|..|||+|+.|+..|..+.+.+|+.+| +.+...+ ..|.+++.+|-+.|+.++++.|-++-.+-+..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-ESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc-cccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            4688999999999999999999999999999999 8888884 599999999999999999999998755544443

>KOG0520|consensus

Probab=97.90  E-value=5.3e-06  Score=93.26  Aligned_cols=96  Identities=23%  Similarity=0.258  Sum_probs=77.0

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHH-HHCCCCcccccCCCCCcHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCEL-VSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~L-L~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      ..|.+-+|+++..++.-.+..+++..+......|.+|.-.+|+ |..++.+.+.+| ...|..++.+|. .||||||||+
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~-~G~tpL~wAa  649 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR-NGWTPLHWAA  649 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC-CCCcccchHh
Confidence            5788999999999999999998885455566667777777888 455555555444 456889999965 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCC
Q psy6441         164 KRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin  182 (464)
                      .+|+..++..|++.|++..
T Consensus       650 ~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPG  668 (975)
T ss_pred             hcCHHHHHHHHHHhccccc
Confidence            9999999999999888765

>KOG0521|consensus

Probab=97.74  E-value=2.2e-05  Score=88.40  Aligned_cols=90  Identities=21%  Similarity=0.192  Sum_probs=82.2

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      ...|.|+||.|+..|..-++++|++. |+++|..|..|.+|||.+...|+...+..|+++|++.++.+ .+|.+||++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~-~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD-PDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC-ccCcchhhHHh
Confidence            35789999999999999999999999 99999999999999999999999999999999999999995 59999999998


Q ss_pred             HcCCHHHHHHHH
Q psy6441         164 KRGQKDIVSYLL  175 (464)
Q Consensus       164 ~~G~~eiv~lLL  175 (464)
                      ...+.+++-+|.
T Consensus       731 ~~~~~d~~~l~~  742 (785)
T KOG0521|consen  731 EAANADIVLLLR  742 (785)
T ss_pred             hhccccHHHHHh
Confidence            877777765554

>KOG2384|consensus

Probab=97.62  E-value=0.0001  Score=68.85  Aligned_cols=61  Identities=34%  Similarity=0.359  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       144 Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~G-Adin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +.++|++| ..|||||+.|+..|..+.+.+|+.+| |++...|..|.+++.+|-   ..+++.+|.
T Consensus         2 e~~in~rD-~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lf   66 (223)
T KOG2384|consen    2 EGNINARD-AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLF   66 (223)
T ss_pred             CCCccchh-hhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHH
Confidence            46889995 49999999999999999999999999 899999999999999994   668888883

>KOG0511|consensus

Probab=97.54  E-value=9.5e-05  Score=75.26  Aligned_cols=85  Identities=20%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      .--|..||+.|+.+.|++|++. |.++|..|.....||.+|+..||.++|++||++||-.. ++..+|... |+++.+. 
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~RC-~YgaLnd-  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDRC-HYGALND-  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcchh-hhhhhhH-
Confidence            3447889999999999999997 99999999999999999999999999999999998654 445677655 5555443 


Q ss_pred             HHHHHHHHHC
Q psy6441         168 KDIVSYLLKH  177 (464)
Q Consensus       168 ~eiv~lLL~~  177 (464)
                       .|-+.||.+
T Consensus       113 -~IR~mllsy  121 (516)
T KOG0511|consen  113 -RIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHH
Confidence             344566655

>KOG2505|consensus

Probab=97.26  E-value=0.00047  Score=72.45  Aligned_cols=72  Identities=26%  Similarity=0.372  Sum_probs=61.1

Q ss_pred             HHHHHHHHHCCCCcccc-----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHHh
Q psy6441         134 FEAVCELVSKGIDINAQ-----HDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLG  205 (464)
Q Consensus       134 ~eiVk~LL~~Gadvn~~-----dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL~  205 (464)
                      ...+++|.+++++.|..     ++..-.|+||+|+..|..++|.+||+.|+|+..+|..|+||..++++.+|...+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHH
Confidence            56788888888777543     1224569999999999999999999999999999999999999999888887763

>KOG3609|consensus

Probab=97.22  E-value=0.00053  Score=76.21  Aligned_cols=91  Identities=23%  Similarity=0.233  Sum_probs=45.4

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCc---------ccccCCC
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDI---------NAQHDMN  154 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadv---------n~~dd~~  154 (464)
                      |.-|+++|+.|+.+-+.++++.|++. +...       ..+|.+|+..|..++|+.++.+-...         +...-.-
T Consensus        59 d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~  130 (822)
T KOG3609|consen   59 DPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTP  130 (822)
T ss_pred             ChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCC
Confidence            34455555555555555555555555 2222       22455555555555555555442111         1010113


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy6441         155 GWTALHWAAKRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       155 G~TpLH~Aa~~G~~eiv~lLL~~GAdin  182 (464)
                      +.|||.+||..++.||+++||.+|+.+.
T Consensus       131 ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  131 DITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             CccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            4456666666666666666665555543

>KOG0520|consensus

Probab=97.13  E-value=0.00082  Score=76.15  Aligned_cols=92  Identities=30%  Similarity=0.253  Sum_probs=75.8

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc-----CCCCCcHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH-----DMNGWTAL  159 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d-----d~~G~TpL  159 (464)
                      .+|...+|. |..++++.+-+|+...|..++.+|..||||||||+.+|+..++..|++.|++.+...     ...|.|+-
T Consensus       606 ~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~  684 (975)
T KOG0520|consen  606 RDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAA  684 (975)
T ss_pred             ccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchh
Confidence            567777788 556777777777776699999999999999999999999999999998877655432     34689999


Q ss_pred             HHHHHcCCHHHHHHHHHC
Q psy6441         160 HWAAKRGQKDIVSYLLKH  177 (464)
Q Consensus       160 H~Aa~~G~~eiv~lLL~~  177 (464)
                      -.|..+|+..+..+|-+.
T Consensus       685 ~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  685 DLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhhhcccccchHHHHhhh
Confidence            999999999888777654

>KOG3609|consensus

Probab=97.07  E-value=0.00099  Score=74.12  Aligned_cols=112  Identities=22%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcC---CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLG---VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~g---a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+......|+..|+...|+..++...   .++|..|..|+++|+.|..+.+.+++++|++++..+  .      .+|-+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g------dALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G------DALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c------hHHHHH
Confidence            34445678999999999999888643   478899999999999999999999999999987655  2      489999


Q ss_pred             HHcCCHHHHHHHHHCCCCC----------CCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADK----------SLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdi----------n~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +..|..++|++++.+-...          ...-.-+-||+.+||   +.+|+++|.
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll  151 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLL  151 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHH
Confidence            9999999999999873322          122234668888886   347777773

>smart00248 ANK ankyrin repeats

Probab=96.99  E-value=0.0013  Score=40.06  Aligned_cols=28  Identities=46%  Similarity=0.709  Sum_probs=21.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy6441         155 GWTALHWAAKRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       155 G~TpLH~Aa~~G~~eiv~lLL~~GAdin  182 (464)
                      |+||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6788888888888888888888777654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.20  E-value=0.0064  Score=36.79  Aligned_cols=28  Identities=39%  Similarity=0.419  Sum_probs=23.8

Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHCCCCcc
Q psy6441         121 LEEQLREASCLGDFEAVCELVSKGIDIN  148 (464)
Q Consensus       121 G~TpLh~Aa~~G~~eiVk~LL~~Gadvn  148 (464)
                      |.||||+|+..++.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6788999999999999999998887654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=94.50  E-value=0.039  Score=58.45  Aligned_cols=71  Identities=20%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             hhhhcchhhcCCCcc------cccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy6441         101 NSARLPFSVLGVSDM------DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL  174 (464)
Q Consensus       101 ~iVk~LL~~~ga~~~------~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lL  174 (464)
                      ..+.+|.++ +++.|      ..+..-.|+||+|+..|..++|.+||+.|+|+..+|. .|+||..+++   +.+|-..+
T Consensus       405 ~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  405 DSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhccc-CCCCcccccc---cHHHHHHH
Confidence            445555555 44443      3334567999999999999999999999999999965 9999999987   45555444


Q ss_pred             HH
Q psy6441         175 LK  176 (464)
Q Consensus       175 L~  176 (464)
                      +.
T Consensus       480 ~a  481 (591)
T KOG2505|consen  480 IA  481 (591)
T ss_pred             HH
Confidence            43

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.03  E-value=0.14  Score=49.47  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             hhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCCccccc----chhhhHHHHHHh--cCCHHHHHH
Q psy6441          66 KDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV----KYLEEQLREASC--LGDFEAVCE  139 (464)
Q Consensus        66 ~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d----~~G~TpLh~Aa~--~G~~eiVk~  139 (464)
                      .++....++.++.......++-.+++.+|..++..+++.+|+...  .....|    ..+.--+-++..  .-+..++++
T Consensus       158 edAV~AsN~~~i~~~VtdKkdA~~Am~~si~~~K~dva~~lls~f--~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~  235 (284)
T PF06128_consen  158 EDAVKASNYEEISNLVTDKKDAHQAMWLSIGNAKEDVALYLLSKF--NFTKQDVASMEKELYDIEYLLSEHSASYKVLEY  235 (284)
T ss_pred             HHHHhhcCHHHHHHHhcchHHHHHHHHHHhcccHHHHHHHHHhhc--ceecchhhhcCcchhhHHHHHhhcCCcHHHHHH
Confidence            344555667777777766677889999999999999999999863  222333    122223444433  236788999


Q ss_pred             HHHCC-CCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy6441         140 LVSKG-IDINAQ--HDMNGWTALHWAAKRGQKDIVSYLLKHGAD  180 (464)
Q Consensus       140 LL~~G-advn~~--dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd  180 (464)
                      .+++| +++|.+  .-..|.|-|--|.++++.+++.+||++||-
T Consensus       236 Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  236 FINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            99997 677743  123699999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	464
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		7e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		7e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+SKG D+NA+ D +G T LH+AAK G K+IV  L+  GAD +  
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            S   TPL  A K      V++L+    G  +NT+D
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNTSD 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  G T LH AAKRG  +IV  LLKHGAD
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
            +   S   TPL LA        V +LL  E G  +N  D
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D  GWT LH AA  G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +   S   TPL LA +      V +LL  + G  +N +D
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLL--KNGADVNASD 110

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G+ + V +L+  G D+NA  D +G T LH AA+ G K++V  LL  GAD
Sbjct: 4   LGKRLIEAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILL--GGEPGVTINTADLPI 219
            +   S  +TPL LA     K  V++LL  G +P    +    P+
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 107

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +GWT LH AA  G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            + +     TPL LA 
Sbjct: 73  VNAVDHAGMTPLRLAA 88

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  G T LH AAKRG  +IV  LLKHGAD
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
            +       TPL LA        V +LL  E G  +N  D
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  G T LH AAKRG  +IV  LLKHGAD
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATK----PEVRILLGGEPGVTINTAD 216
            +       TPL LA        V +LL  E G  +N  D
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQD 110

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA  D+ G T LH AA  G  +IV  LLKHGAD +  
Sbjct: 51  LHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +   TPL LA K      V +LL  + G  +N  D
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLL--KHGADVNAQD 143

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +G+T LH AA+ G  +IV  LLK GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +       TPL LA +      V +LL  + G  +N  D
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 110

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +G+T LH AA+ G  +IV  LLK GAD
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +       TPL LA +      V +LL  + G  +N  D
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 98

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +G+T LH AA+ G  +IV  LLK GAD
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +       TPL LA +      V +LL  + G  +N  D
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKD 98

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +G T LH AA +G  +IV  LLKHGAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            +      +TPL LA 
Sbjct: 73  VNAADKMGDTPLHLAA 88

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D NG T LH AA  GQ +IV  LLK+GAD
Sbjct: 6   LGKKLLEAAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 181 KSLLTSKEETPLALAT 196
            +   S   TPL LA 
Sbjct: 65  VNASDSAGITPLHLAA 80

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           Y +  L  A+ +G  E V  L+  G D+NA  D +G T LH AAKRG  +IV  LLK+GA
Sbjct: 46  YGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 180 DKSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
           D +   +   TPL LA        V +LL  + G  +N  D
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLL--KYGADVNAQD 143

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  E +  L+    D+NA  D +GWT LH AA RG  +IV  LLK+GAD + +  +  TP
Sbjct: 58  GHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTP 116
Query: 192 LALATKPE----VRILLGGEPGVTINTAD 216
           L LA +      V +LL  + G  +N  D
Sbjct: 117 LHLAAEDGHLEIVEVLL--KYGADVNAQD 143

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
           D + V +L+  G ++N Q +  GWT LH A +  ++DIV  LL+HGAD  L      TP 
Sbjct: 37  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 193 ALAT-KPEVRIL-LGGEPGVTINTADL 217
            LA     V++L L    G  +N  D 
Sbjct: 97  ILAAIAGSVKLLKLFLSKGADVNECDF 123

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 133 DFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL 192
           D + V +L+  G ++N Q +  GWT LH A +  ++DIV  LL+HGAD  L      TP 
Sbjct: 17  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 193 ALAT-KPEVRIL-LGGEPGVTINTADL 217
            LA     V++L L    G  +N  D 
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDF 103

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G+ + V +L+  G D NA  D +G T LH+AA+ G K+IV  LL  GAD
Sbjct: 4   LGKRLIEAAENGNKDRVKDLLENGADPNAS-DSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILL--GGEPGVTINTADLPI 219
            +   S   TPL  A     K  V++LL  G +P    +    P+
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D+ GWT LH AA  G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            +   +   TPL LA 
Sbjct: 73  VNAYDTLGSTPLHLAA 88

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+ +G  E V  L+  G D+NA+ D +GWT LH AA  G  +IV  LLK+GAD +  
Sbjct: 51  LHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +   TPL LA        V +LL  + G  +N  D
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVLL--KHGADVNAQD 143

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS  G    V  LVS G D+NAQ   NG TALH A      D+VS LLK GAD + +
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Query: 185 TSKEETPLALA-TKPEVRI 202
           T +  +P  L   +P  RI
Sbjct: 178 TYQGYSPYQLTWGRPSTRI 196

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 33  YSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQE------IELVLSQMPD 86
           Y+ L+I  K+  ++  +++L+     N      + V  L +  +      + L+LS+  +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 87  GHGSIVNGMENTHL--NSARLPFS------VLGVSDMDRVKYLEEQLREASCLGDFEAVC 138
           G+    +G+   HL      +P +       + V    R+ Y    L  AS  G+ + V 
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY--TPLHVASHYGNIKLVK 328
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
            L+    D+NA+  + G++ LH AA++G  DIV+ LLK+GA  + ++S   TPLA+A +
Sbjct: 329 FLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS  G    V  LVS G D+NAQ   NG TALH A      D+VS LLK GAD + +
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 185 TSKEETPLALA-TKPEVRI 202
           T +  +P  L   +P  RI
Sbjct: 181 TYQGYSPYQLTWGRPSTRI 199

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G+ + V +L+  G D+NA  D +G T LH AA+ G K++V  L+  GAD
Sbjct: 4   LGKRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 181 KSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
            +   S   TPL  A     K  V++L+    G  +N  D
Sbjct: 63  VNAKDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKD 100

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D +G T LH AA  G  +IV  LLKHGAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            + +     TPL LA 
Sbjct: 73  VNAIDIXGSTPLHLAA 88

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D +G T LH AA  G  +IV  LLKHGAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            + +     TPL LA 
Sbjct: 73  VNAIDIMGSTPLHLAA 88

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  GWT LH AA  G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALAT 196
            +   S   TPL LA 
Sbjct: 73  VNADDSLGVTPLHLAA 88

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GAD +       TP
Sbjct: 13  GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 192 LALATK----PEVRILLGGEPGVTINTAD 216
           L LA +      V++LL  E G  +N  D
Sbjct: 72  LHLAARNGHLEVVKLLL--EAGADVNAKD 98

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           Y    L  A+ +G  E V  L+  G D+NA  D NG T LH AA  G  +IV  LLK+GA
Sbjct: 34  YGRTPLHMAAAVGHLEIVEVLLRNGADVNAV-DTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 180 DKSLLTSKEETPLALA 195
           D +   +   TPL LA
Sbjct: 93  DVNAKDATGITPLYLA 108

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  G T LH AA  G  +IV  LLKHGAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTADL 217
                    TPL LA        V +LL  + G  +N  D+
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDM 111

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D++A  D+ G+T LH AA  G  +IV  LLK+GAD + +
Sbjct: 51  LHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            S   TPL LA K      V +LL  + G  +N  D
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLL--KHGADVNAQD 143

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V +L+SKG D+NA+   +G T LH AAK G  +IV  LL  GAD +  
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 185 TSKEETPLALATK 197
           +    TP  LA K
Sbjct: 72  SKDGNTPEHLAKK 84

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D  G T LH AAK G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +   +   TPL LA        V +LL  + G  +N  D
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLL--KHGADVNAKD 110

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
           V +L++   DINA  D +G TALHWAA     + V+ LL H A++     K+ETPL LA 
Sbjct: 134 VEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 197 K 197
           +
Sbjct: 193 R 193

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
           G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GAD +       TP
Sbjct: 13  GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 192 LALATK 197
           L LA +
Sbjct: 72  LHLAAR 77

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
           D  G+T L WAA  GQ  +V +LL++GAD  LL    E+ L+LA        V++LL  +
Sbjct: 49  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 106
Query: 208 PGVTINTAD 216
            GV +N  D
Sbjct: 107 CGVDVNEYD 115

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L + G D+NA +D  G T LH AA  G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
            +   +   TPL LA   +    V +LL  + G  +N  D
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLL--KHGADVNAQD 110

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
           D  G+T L WAA  GQ  +V +LL++GAD  LL    E+ L+LA        V++LL  +
Sbjct: 31  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 88
Query: 208 PGVTINTAD 216
            GV +N  D
Sbjct: 89  CGVDVNEYD 97

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE----VRILLGGE 207
           D  G+T L WAA  GQ  +V +LL++GAD  LL    E+ L+LA        V++LL  +
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL--D 90
Query: 208 PGVTINTAD 216
            GV +N  D
Sbjct: 91  CGVDVNEYD 99

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D +G+T LH AA+ G  +IV  LLK GAD
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA  D +G T LH AA+ G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 181 KSLLTSKEETPLALA 195
            +   +   TPL LA
Sbjct: 73  VNAEDNFGITPLHLA 87

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA +D  G T LH AA     +IV  LLKHGAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 181 KSLLTSKEETPLALA 195
            +   +   TPL LA
Sbjct: 73  VNAHDNDGSTPLHLA 87

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D  G T LH AA     +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLAL 194
            + + +  ETPL L
Sbjct: 73  VNAIDAIGETPLHL 86

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  +KEETPL LA +
Sbjct: 33  DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  +KEETPL LA +
Sbjct: 107 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  ++EETPL LA +
Sbjct: 143 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  ++EETPL LA +
Sbjct: 142 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  ++EETPL LA +
Sbjct: 110 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G +E    L+  G  +NA  D+  +T LH AA + + ++ S LL HGAD +L+
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 185 TSKEETPLALATKPEVR 201
               ++ + +A  PE+R
Sbjct: 154 NCHGKSAVDMAPTPELR 170

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L++   D+NA  D+ G +ALHWAA     D    LLK+GA+K +  ++EETPL LA +
Sbjct: 142 DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
           GVS   R K     L  A+  G    V  L+  G D+NA+ DM   TALHWA +   +++
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEV 115
Query: 171 VSYLLKHGAD 180
           V  L+K+GAD
Sbjct: 116 VELLIKYGAD 125

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L ++L EA+  G  + V  L++ G D+NA+ D  G T L+ A   G  +IV  LLK+GAD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 181 KSLLTSKEETPLALA 195
            + + +   TPL LA
Sbjct: 73  VNAVDAIGFTPLHLA 87

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + + +  G+ + + E + KG ++  + D  G+T L WA+  G+ + V +LL+ GAD  +L
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 185 TSKEETPLALAT 196
             + E+ L+LA+
Sbjct: 66  AKERESALSLAS 77

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + + +  G+ + + E + KG ++  + D  G+T L WA+  G+ + V +LL+ GAD  +L
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 185 TSKEETPLALAT 196
             + E+ L+LA+
Sbjct: 66  AKERESALSLAS 77

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPE 199
           L+  G ++NAQ   +G +ALH A+ RG   +V  L++ GAD SL     +TPL +A    
Sbjct: 169 LLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 200 VRILLGGE 207
           V  +L G+
Sbjct: 228 VIDILRGK 235

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 129 SCLGD-FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           +C+ D  + V  LV  G +IN Q D  GW  LH AA  G  DI  YL+  GA    + S+
Sbjct: 80  ACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 188 EETPL 192
            +TPL
Sbjct: 139 GDTPL 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	464
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	5e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	8e-10
2rfa_A	232	Transient receptor potential cation channel subfa	8e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	8e-10
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-06

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.5 bits (202), Expect = 4e-19
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 118 VKYLEEQ-----------LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG 166
              L  +           L EA+  G  + V  L++ G D+ A+ D NG T LH AA+ G
Sbjct: 10  SSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNG 68

Query: 167 QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
             ++V  LL+ GAD        +T   ++  
Sbjct: 69  HLEVVKLLLEAGADVXAQDKFGKTAFDISID 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
            S          LV +G  + +    +    L  AA+ GQ D V  L+ +GAD +     
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 188 EETPLALATK 197
             TPL LA +
Sbjct: 57  GSTPLHLAAR 66

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
           L  A+  G  E V  L+  G D+ AQ D  G TA   +   G +D+   L
Sbjct: 61  LHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 9/59 (15%)

Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
            +        S L+  G+      S     L  A       EVRIL+    G  +   D
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILM--ANGADVAAKD 54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 83.2 bits (207), Expect = 5e-19
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + + +  G+   +   + +   IN   D  G+T L WAA  GQ  +V +LL++GAD  LL
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
               E+ L+LA        V++LL  + GV +N  D
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLL--DCGVDVNEYD 99

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 7e-18
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G  + V  L+  G+D+N   D NG T L +A        V  LL+ GAD ++ 
Sbjct: 73  LSLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131

Query: 185 TSKEETPLALATK 197
           T      + LA  
Sbjct: 132 TDSGYNSMDLAVA 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.2 bits (194), Expect = 3e-17
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G    V  L+  G D          +AL  A  +G  DIV  LL  G D +  
Sbjct: 40  LMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TPL  A      + V++LL  E G       
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLL--ESGADPTIET 132

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           L  A      + V  L+  G D   +   +G+ ++  A   G + +   +  H    
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPG 209
               ++H  A +G+   ++  ++     +    +  TPL  A        V  LL  + G
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL--QNG 59

Query: 210 VTINTAD 216
                  
Sbjct: 60  ADPQLLG 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.7 bits (198), Expect = 3e-18
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
              A   GD + V + V+KG D+N      G   LH+AA  GQ +I+ +LL  GAD +  
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 185 TSKEETPLALA 195
                TPL  A
Sbjct: 70  DKHHITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E +  L+ KG DINA  D +  T L  A   G    V  LL  GADK++ 
Sbjct: 44  LHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102

Query: 185 TSKEETPLALATKPEVRILL 204
                T         ++ LL
Sbjct: 103 GPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 11/42 (26%), Positives = 13/42 (30%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
                  WA K G  D V   +  G D +        PL  A
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA 47

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 80.2 bits (199), Expect = 6e-18
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS  G  + V  L+ + +DIN   D NG T L +A +      V  LL  GAD +  
Sbjct: 73  LSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TP+ LA      +  +++      + +  ++
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIE--NHILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 8e-18
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKGID-INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           + + +  G+ + + E + KG + +N   D  G+T L WA+  G+ + V +LL+ GAD  +
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 184 LTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           L  + E+ L+LA+     + V +LL  E  V IN  D
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL--ERDVDINIYD 99

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.8 bits (193), Expect = 4e-17
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS  G+ E V  L+  G D +        +AL  A+  G  DIV  LL+   D ++ 
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TPL  A +    + V  LL    G  + T  
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALL--ARGADLTTEA 132

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A      + V  L+++G D+  +   +G+T +  A   G + +   +  H       
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164

Query: 185 TSKEETP 191
                 P
Sbjct: 165 NLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.0 bits (131), Expect = 8e-09
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE-ETPLALATK---PE-VRILLGGEPG 209
              ++H  A +G+ D +   L+ G +      +   TPL  A+     E VR LL  E G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL--EWG 59

Query: 210 VTINTAD 216
              +   
Sbjct: 60  ADPHILA 66

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L EA   G  + V  L+     +N        + LH AAK G  DIV  LL +GA ++ +
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105

Query: 185 TSKEETPLALATK 197
                 P+     
Sbjct: 106 NIFGLRPVDYTDD 118

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           AS  GD  +V  L+  G D N + D  GWT LH A   G   +V  LL+H A  +    +
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75

Query: 188 EETPLALATK 197
            ++PL  A K
Sbjct: 76  NDSPLHDAAK 85

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
           GID     +  G T LH A+ +G    V YLL++G+D ++      TPL  A
Sbjct: 1   GIDPFT--NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.7 bits (151), Expect = 8e-12
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
           L +A+  G  + V  L+S G   NA  ++ G   + +      K ++    K+ +  +
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A    + + V  LV  G +IN   D  GW  LH AA  G  DI  YL+  GA    + S+
Sbjct: 80  ACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query: 188 EETPLALATK---PEVRILLGGEPGVTINTAD 216
            +TPL +A +    E+        GV I  A 
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+  G  E +  L+    D+N + D +GWT LH AA  G+++    L+++  D   +   
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264

Query: 188 EETPLALATKPEVRIL--LGGEPGVTINTAD 216
            +T   +A +  +  L  L  +  +  +   
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.8 bits (190), Expect = 9e-16
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
            A   GD E V  L+ +G DIN   +++G TALH A      D+V +L+++GA+ +   +
Sbjct: 46  AACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 187 KEETPLALA 195
           +   PL  A
Sbjct: 105 EGWIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 116 DRVKYL--------EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ 167
           + ++          E   +E   +   +A   L S  I+    H  +G TALH AA +G 
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGGTALHVAAAKGY 211

Query: 168 KDIVSYLLKHGADKSLLTSKEETPLALATK 197
            +++  L++   D ++      TPL  A  
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSL 183
           L  A+  G  +    L+S+G  + A  +  G T L  A +   ++++   + + G D   
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 184 LTSKEETPLALATKPEVRILLGGEPGVTINTAD 216
              +EE  +        + L  G   +      
Sbjct: 169 ARKEEERIMLRDA---RQWLNSG--HINDVRHA 196

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
              +G    +   V K      +   +       A   G  + V  LL+ GAD +     
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLERGADINYANVD 72

Query: 188 EETPLALATKPE----VRILLGGEPGVTINTAD 216
             T L  A   +    V+ L+  E G  IN  D
Sbjct: 73  GLTALHQACIDDNVDMVKFLV--ENGANINQPD 103

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
           L  A+  G  EA   LV    D+ A  +  G TA   A +     +     K     S
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 6/73 (8%)

Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRIL 203
           +    D             G +  +   +       +        LA  +     EV  L
Sbjct: 1   MKMA-DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 204 LGGEPGVTINTAD 216
           L  E G  IN A+
Sbjct: 60  L--ERGADINYAN 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L +A    D + V +L+  G ++N Q +  GWT LH A +  ++DIV  LL+HGAD  L 
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TP  LA      + +++ L    G  +N  D
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFL--SKGADVNECD 102

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 8e-16
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A  +   + V  L+  G D   +   NG T    AA  G   ++   L  GAD +  
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                T    A        ++ L   + G  +N   
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLY--KRGANVNLRR 135

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 8e-13
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 125 LREASCLGDFEAVCE----LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGA 179
           L  A    D   V      L+  G D+N +    G T L  A ++    +V  LL +   
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 180 DKSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTADL 217
           + +   S  +T L LA +    +   +L   + G + +  DL
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLC--KRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 5e-12
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 20/110 (18%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ---------HDMNGWTALHWAAKRGQKDIVSYLL 175
             EA+  G  +A+  L  +G ++N +             G TAL  AA++G  +++  LL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 176 KH-GADKSLLTSKEETPLALAT--------KPEVRILLGGEPGVTINTAD 216
              GAD +   +     L  A         +    +LL  + G  +N   
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL--DHGADVNVRG 216

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK-EETPLALAT----KPEVRILLGG 206
            +     L  A +    D+V  LL+ GA+ +    +   TPL  A     +  V +LL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-- 59

Query: 207 EPGVTINTAD 216
             G       
Sbjct: 60  RHGADPVLRK 69

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L   + LG  + V  L   G D++ +    G TALH AA   + ++V  L++ GAD  + 
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 185 TSKEETPLALATK 197
             +  T L LA +
Sbjct: 140 DERGLTALELARE 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.7 bits (169), Expect = 9e-14
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
              A+   D +A+   + +  D++A  D NG TAL + A  G    V  L + GAD    
Sbjct: 48  WWTAARKADEQAL-SQLLEDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 185 TSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
             +   T L +A        V  L+  E G  I   D
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVED 140

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A+     E V  LV  G DI  + D  G TAL  A +  +       ++ G  
Sbjct: 114 LHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
                  G   +         D+ +       T    AA++  +  +S LL    D   +
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLL-EDRDVDAV 72

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                T L           VR+L   E G  ++  D
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLA--EAGADLDHRD 106

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 10/78 (12%)

Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KP 198
               I ++    G        K G            AD     S+ ETP   A     + 
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQ 58

Query: 199 EVRILLGGEPGVTINTAD 216
            +  LL       ++  D
Sbjct: 59  ALSQLLE---DRDVDAVD 73

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L   + LG  + V  L   G D++ +    G TALH AA   + ++V  L++ GAD  + 
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 185 TSKEETPLALATK 197
             +  T L LA +
Sbjct: 141 DERGLTALELARE 153

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+     E V  LV  G DI  + D  G TAL  A +  +       ++ G    L 
Sbjct: 115 LHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRRIGL- 172

Query: 185 TSKEETPLALATKPE----VRILLGGEPGVTI 212
             ++   +      E      I+     G  +
Sbjct: 173 --EKVINVLEGQVFEYAEVDEIVEKRGKGKDV 202

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
              A+   D +A+   + +  D++A  D NG TAL + A  G    V  L + GAD    
Sbjct: 49  WWTAARKADEQAL-SQLLEDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 185 TSK-EETPLALATK---PE-VRILLGGEPGVTINTAD 216
             +   T L +A     PE V  L+  E G  I   D
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVED 141

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
                  G   +         D+ +       T    AA++  +  +S LL    D   +
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLL-EDRDVDAV 73

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                T L           VR+L   E G  ++  D
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLA--EAGADLDHRD 107

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRI 202
           I ++    G        K G            AD   + S+ ETP   A     +  +  
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQ 63

Query: 203 LLGGEPGVTINTAD 216
           LL       ++  D
Sbjct: 64  LL---EDRDVDAVD 74

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 8/77 (10%), Positives = 14/77 (18%), Gaps = 21/77 (27%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQH---------------------DMNGWTALHWAA 163
           L  A  +         +  G  I  +                         G    +   
Sbjct: 148 LELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVR 207

Query: 164 KRGQKDIVSYLLKHGAD 180
            +   D       H A+
Sbjct: 208 WKDGGDCEWVKGVHVAE 224

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.0 bits (191), Expect = 2e-17
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GAD +  
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97

Query: 185 TSKEETPLALATK 197
                TPL LA +
Sbjct: 98  DKNGRTPLHLAAR 110

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 3e-16
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GAD +  
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TPL LA +    E V++LL  E G  +N  D
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKD 98

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.5 bits (169), Expect = 2e-14
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  A+  G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GA
Sbjct: 72  LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 1e-11
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPG 209
           NG T LH AA+ G  ++V  LL+ GAD +       TPL LA        V++LL  E G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58

Query: 210 VTINTAD 216
             +N  D
Sbjct: 59  ADVNAKD 65

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 3e-17
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+ L     + +L++   D+NA  D  G +ALHWAA     D    LLK+GA+K +  ++
Sbjct: 131 AARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189

Query: 188 EETPLALATK 197
           EETPL LA +
Sbjct: 190 EETPLFLAAR 199

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+ + + +A   L+  G + + Q +    T L  AA+ G  +    LL H A++ + 
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDIT 219

Query: 185 TSKEETPLALATK 197
              +  P  +A +
Sbjct: 220 DHMDRLPRDIAQE 232

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 137 VCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
           V    + +G  ++ Q D  G TALH AA+  + D    LL+  AD ++  +   TPL  A
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97

Query: 196 TK 197
             
Sbjct: 98  VS 99

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
           L  A+     +A   L+    D N Q D  G T LH A     + +   L+++ A D   
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 184 LTSKEETPLALATK 197
                 TPL LA +
Sbjct: 120 RMHDGTTPLILAAR 133

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A+  G +E    L+    + +   D         A +R   DIV  L      
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A           L+     D++A+   +G T L  AA+   + ++  L+   AD + 
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
           +    ++ L  A          +LL  + G   +  +
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLL--KNGANKDMQN 187

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 145 IDINAQHDMNGWTALHWAAKRGQ-------------KDIVSYLLKHGADKSLLTSKE-ET 190
           +D+N +   +G+T L  A+  G                ++S  +  GA     T +  ET
Sbjct: 1   MDVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 191 PLALAT----KPEVRILLGGEPGVTINTAD 216
            L LA         + LL  E     N  D
Sbjct: 60  ALHLAARYSRSDAAKRLL--EASADANIQD 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GAD +  
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 185 TSKEETPLALATK 197
                TPL LA +
Sbjct: 65  DKNGRTPLHLAAR 77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  A+  G  E V  L+  G D+NA+ D NG T LH AA+ G  ++V  LL+ GA
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPG 209
           NG T LH AA+ G  ++V  LL+ GAD +       TPL LA +    E V++LL  E G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAG 58

Query: 210 VTINTAD 216
             +N  D
Sbjct: 59  ADVNAKD 65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 6e-17
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+ +G    V  L+    + N      G T LH AA+ G  + V  LL+  A ++ +
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQACM 142

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           T K  TPL +A K        +LL  E     N A 
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLL--ERDAHPNAAG 176

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.6 bits (200), Expect = 2e-16
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS +G    V  L+ +G   N   ++   T LH AA+ G  ++  YLL++ A  +  
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
              ++TPL  A        V++LL  E     N A 
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLL--ENNANPNLAT 110

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E    L+     +NA+   +  T LH AA+ G  ++V  LL++ A+ +L 
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           T+   TPL +A +    E V  LL  E   +     
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL--EKEASQACMT 143

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 2e-16
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A    + + V  L+ +G   ++    NG+T LH AAK+ Q ++   LL++G   +  
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           + +  TPL LA +    E V +LL        N  +
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLL--SKQANGNLGN 275

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+     E    L+  G   NA+  + G T LH AA+ G  ++V+ LL   A+ +L 
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                TPL L       P   +L+  + GV ++   
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI--KHGVMVDATT 308

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 2e-15
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS  G+ + V  L+    D+NA+    G++ LH AA++G  DIV+ LLK+GA  + +
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 185 TSKEETPLALATK---PEVRILL--GGEPGVTINTAD 216
           +S   TPLA+A +     V  +L    +    +  +D
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L   +  G       L+  G+ ++A     G+T LH A+  G   +V +LL+H AD +  
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           T    +PL  A +    + V +LL  + G + N   
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLL--KNGASPNEVS 374

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 1e-14
 Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G       L+ +    NA    NG T LH A      DIV  LL  G      
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TPL +A K    E  R LL  + G + N   
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLL--QYGGSANAES 242

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 1e-14
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+ K           G+T LH AAK G+  +   LL+  A  +  
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                TPL +A      + V++LL    G + ++  
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL--PRGGSPHSPA 209

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+SK  + N   + +G T LH  A+ G   +   L+KHG      
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 185 TSKEETPLALATK 197
           T    TPL +A+ 
Sbjct: 308 TRMGYTPLHVASH 320

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 5e-14
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 142 SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---P 198
           S GI        +G T LH A+  G   IV  LL+ GA  ++   K ETPL +A +    
Sbjct: 2   SPGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 199 E-VRILLGGEPGVTINTAD 216
           E  + LL  +    +N   
Sbjct: 61  EVAKYLL--QNKAKVNAKA 77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L +A+  G  + V  L+  G   N     +G T L  A + G   +   L     + S +
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406

Query: 185 TSKEE 189
              ++
Sbjct: 407 LVSDK 411

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.6 bits (195), Expect = 6e-17
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 125 LREASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD--- 180
           L +A    +F  V E L SK   +  + D +G   LHW+      +I S+LL    +   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 181 KSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                    TP  +A      E V+ L        +N   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 72.5 bits (179), Expect = 8e-15
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 125 LREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKS 182
           L  A+ +G  + +  L   G   +N Q D  GWT L  A   G  D    L+ K+GA+  
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202

Query: 183 LLTSKEETPLALATKPEVRILL 204
           L+ +K      +A   +V+   
Sbjct: 203 LVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 7e-13
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 128 ASCLGDFEAVCELVSK--GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT 185
           A  +G+ E V  L  +    D+N      G T LH A  +   ++  +L+++GA   +  
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137

Query: 186 SKEETPLALA 195
              + PL  A
Sbjct: 138 KFNQIPLHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.7 bits (164), Expect = 8e-13
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKSLLTS 186
           A     FE    L+  G  +  + D      LH AA  G   ++  L   G +  +    
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 187 KEETPLALATK---PEVRILLGGEPGVTINTAD 216
           +  TPL  A      +  +LL  + G   +  D
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L  A   G  +A   LV K G + +   D  G  A   A     + +  + L +
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLV-DNKGAKAEDVAL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 1/44 (2%)

Query: 155 GWTALHWAAKRGQKDIV-SYLLKHGADKSLLTSKEETPLALATK 197
               LH A    +   V   L    +           PL  +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 45

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 7e-17
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G +E    L+  G  +NA  D+  +T LH AA + + ++ S LL HGAD +L+
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153

Query: 185 TSKEETPLALATKPE----VRILLGG 206
               ++ + +A  PE    +     G
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKG 179

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+     + +  L   G  +NA  D  G TALH AA  G       LL +G+D S++
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309

Query: 185 TSKEETPLALATKPEVRILLGGEPGVTINTAD 216
           + +  T   +  +  V+ +L       + T+D
Sbjct: 310 SLQGFTAAQMGNE-AVQQIL--SESTPMRTSD 338

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L EA+  G+ E +   L    ++ +A  D    T LH AA   +  IV  LL+HGAD   
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 184 LTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                  PL  A      E   +LL  + G  +N  D
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLL--KHGACVNAMD 121

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+       V  L+  G D++A+ D  G   LH A   G  ++   LLKHGA  + +   
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 188 EETPLALATK 197
           + TPL  A  
Sbjct: 124 QFTPLHEAAS 133

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT--- 196
           L+ KG ++N + + +  T LH AA+R   D++  L KHGA  + L S  +T L  A    
Sbjct: 233 LLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291

Query: 197 -KPEVRILLGGEPGVTINTAD 216
                R+LL    G   +   
Sbjct: 292 HLQTCRLLL--SYGSDPSIIS 310

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.4 bits (171), Expect = 4e-13
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 116 DRVKYLEEQ--LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG---QKDI 170
           +R+ Y  +   L +A+   D   V + ++  I    Q   +  TALH A       +K +
Sbjct: 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQV 229

Query: 171 VSYLLKHGADKSLLTSKEETPLALATK 197
              LL+ GA+ +       TPL +A +
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAE 256

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L EA+     E    L+S G D     + +G +A+  A     ++ ++Y  K  + 
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSL 182

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 139 ELVSKGIDINAQHDMNGWTALHWAAKRG-QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +L           +      L  AA+ G ++ +++ L     +      ++ TPL LA  
Sbjct: 9   DLADPSAKAVLTGE-YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.0 bits (196), Expect = 7e-17
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 20/119 (16%)

Query: 116 DRVKYLEEQ--------------LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW 161
           +R + L E               L  A+     + V   +SKG  ++        T LHW
Sbjct: 23  ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82

Query: 162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
           A ++G   +V  L+K+GAD SL+  +  + + LA        V  L+    G  ++  D
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMD 139

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.7 bits (190), Expect = 4e-16
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + +A+  G +E   ELV  G D+    D    T LHWAA   + D+V Y +  GA    L
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 185 TSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
                 TPL  AT       V  L+  + G   +  D
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLM--KYGADPSLID 106

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.9 bits (188), Expect = 6e-16
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
           +    L++  + +N     +  TALHWA   G   ++S LL+ GA+      K E+ L L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

Query: 195 ATK 197
           A +
Sbjct: 217 AKQ 219

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G    V +L+  G D +   D  G + +H AA+ G   IV+YL+  G D  ++
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 185 TSKEETPLALAT----KPE-VRILLGGEPGVTINTAD 216
                TPL  A       +  R+LL     V++N  D
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLL--TFNVSVNLGD 173

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           A   G+   +  L+  G +++AQ ++ G +AL  A +R    ++++L +    K
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.0 bits (144), Expect = 4e-10
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 7/74 (9%)

Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRI 202
           +    D      +  A + G  +    L++ G D      +  T L  A        V+ 
Sbjct: 2   MTHI-DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 203 LLGGEPGVTINTAD 216
            +    G  ++   
Sbjct: 61  YI--SKGAIVDQLG 72

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.1 bits (186), Expect = 8e-17
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+  G  E V +L+SKG D+NA+   +G T LH AAK G  +IV  LL  GAD +  +  
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74

Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
             TP  LA        V++L     G  +N   
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLD--AKGADVNARS 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.4 bits (179), Expect = 9e-16
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L++KG D+NA+   +G T  H A K G  +IV  L   GAD +  
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 185 TSKEETPL 192
           +       
Sbjct: 105 SWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPE 199
           G         +G T LH AAK G  + V  LL  GAD +  +    TPL LA        
Sbjct: 1   GHMWG---SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57

Query: 200 VRILLGGEPGVTINTAD 216
           V++LL    G  +N   
Sbjct: 58  VKLLL--AKGADVNARS 72

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 76.6 bits (190), Expect = 1e-16
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           LR A+  G  E V  L+  G D+NA  DM G T LH AA  G  +IV  LLK+GAD +  
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142

Query: 185 TSKEETPLALATK 197
               +T   ++  
Sbjct: 143 DKFGKTAFDISID 155

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.3 bits (184), Expect = 6e-16
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA  D  G T L  AA  G  +IV  LLK+GAD +  
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
             +  TPL LA        V +LL  + G  +N  D
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLL--KNGADVNAQD 143

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L EA+  G  + V  L++ G D+NA+ D +GWT LH AA  G  +IV  LLK+GAD + +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                TPL LA        V +LL  + G  +N  D
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLL--KNGADVNAND 110

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +G   +  H  +    L  AA+ G+ D V  L+ +GAD +   +   TPL LA  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 3e-11
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L  A+  G  E V  L+  G D+NAQ D  G TA   +   G +D+   L K 
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 168

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G    V  L+  G D+NA+ DM   TALHWA +   +++V  L+K+GAD    
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129

Query: 185 TSKEETPLALATK 197
           +   +T   ++  
Sbjct: 130 SKFCKTAFDISID 142

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+  G F     L+  G+  +A+      T LH AA  G  +IV  LLKHGAD +     
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99

Query: 188 EETPLALATK 197
           + T L  AT+
Sbjct: 100 KMTALHWATE 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.9 bits (175), Expect = 8e-15
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L EA+  G  + V  L++ G       D  G + LH AA+ G       LL+ G  +   
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 185 TSKEETPLALATK 197
           T  + TPL +A  
Sbjct: 64  TKVDRTPLHMAAS 76

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.5 bits (130), Expect = 7e-09
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
           L  A+     E V  L+  G D++ Q      TA   +   G +D+   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.8 bits (123), Expect = 7e-08
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGAD--KSLLTSKEETPLALATK 197
           +    L  AA+ GQ D V  L+ +GA            +PL LA +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQ 43

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 31/70 (44%), Positives = 37/70 (52%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           AS  G    V  LVS G D+NAQ   NG TALH A      D+VS LLK GAD + +T +
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 188 EETPLALATK 197
             +P  L   
Sbjct: 184 GYSPYQLTWG 193

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 75.7 bits (187), Expect = 8e-16
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A  L + + V  L+  G D+N      G++       R    I   L +   +   +  +
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216

Query: 188 EETPLALAT 196
            E   +  T
Sbjct: 217 SEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A      E    L+  G D   + D  G T LH A ++G    V  L +      L +  
Sbjct: 52  AVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 188 EE------TPLALAT----KPEVRILLGGEPGVTINTAD 216
           +       T L LA+       V +L+    G  +N  +
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLV--SLGADVNAQE 147

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
            E + ++      +N Q +    T LH A    Q +I   LL  G D  L   +  TPL 
Sbjct: 25  MEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83

Query: 194 LATK 197
           LA +
Sbjct: 84  LACE 87

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 152 DMNGWTALHWAAKRGQK----DIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRIL 203
             +G + LH A    +K    +++  +    A  +   + ++TPL LA     PE    L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 204 LGGEPGVTINTAD 216
           L    G      D
Sbjct: 65  L--GAGCDPELRD 75

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 4e-16
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G +E    LV  G  +N   D+  +T LH AA +G+ +I   LL+HGAD +  
Sbjct: 79  LHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137

Query: 185 TSKEETPLALATK 197
                TPL L   
Sbjct: 138 NRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+       V  L+  G D++A+ D  G   LH A   G  ++   L+KHGA  ++    
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW 107

Query: 188 EETPLALA 195
           + TPL  A
Sbjct: 108 KFTPLHEA 115

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.0 bits (165), Expect = 2e-13
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L EA+  GD E V +L +   ++     +    T LH+AA   +  +V YLL+HGAD   
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

Query: 184 LTSKEETPLALATK 197
                  PL  A  
Sbjct: 71  KDKGGLVPLHNACS 84

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L EA+  G +E    L+  G D   + + +G T L      G  DI   L    A
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALATK 197
           G   N+         L  AAK G  + V  L      +   +  ++ TPL  A  
Sbjct: 1   GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG 51

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.7 bits (190), Expect = 4e-16
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A        V  L+  G ++NAQ   +G +ALH A+ RG   +V  L++ GAD SL    
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 215

Query: 188 EETPLALATK 197
            +TPL +A  
Sbjct: 216 NDTPLMVARS 225

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.4 bits (184), Expect = 3e-15
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 128 ASCLGDFEAVCELVS----KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           A   G+  AV  LV+     G +++   +    T LH A       +V  L+  GA    
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74

Query: 184 LTSKEETPLALATK---PE-VRILL--GGEPGVTINTAD 216
           L    +T   LA +   P  +R LL       + +   +
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A      E V  L+ +G DI+A    +G + L  A +     +V  LL+HGA+ +  
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                + L  A+     P VR L+    G   +  +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLV--RSGADSSLKN 213

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A        V  LV+ G    A  D +G TA H A +      +  LL   A  +L 
Sbjct: 50  LHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

Query: 185 ----TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                    T L +A     +  V++LL  E G  I+  D
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVD 146

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.1 bits (165), Expect = 8e-13
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  AS  G    V  LV  G D + + + +  T L  A  R   DI+       A
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 128 ASCLGDFEAVCELVSKG----IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           A        +  L+       +D+ A+ + +G TALH A     ++ V  LL+ GAD   
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGADIDA 144

Query: 184 LTSKE-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
           +  K   +PL  A        V++LL  + G  +N   
Sbjct: 145 VDIKSGRSPLIHAVENNSLSMVQLLL--QHGANVNAQM 180

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 147 INAQHDMNGWTALHWAAKRGQKDIV----SYLLKHGADKSLLTSKEETPLALATK---PE 199
                D +G T LH A  +G    V    +   + G +  +  +  +TPL LA     P 
Sbjct: 2   ATRA-DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 200 -VRILLGGEPGVTINTAD 216
            VR+L+    G +    D
Sbjct: 61  VVRLLV--TAGASPMALD 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.9 bits (188), Expect = 6e-16
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+ L     + +L++   D+NA  D  G +ALHWAA     D    LLK+GA+K +  ++
Sbjct: 99  AARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157

Query: 188 EETPLALATK 197
           EETPL LA +
Sbjct: 158 EETPLFLAAR 167

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+ + + +A   L+  G + + Q +    T L  AA+ G  +    LL H A++ +    
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 190

Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
           +  P  +A        VR+L   E  +  +   
Sbjct: 191 DRLPRDIAQERMHHDIVRLLD--EYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.4 bits (179), Expect = 9e-15
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 132 GDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET 190
           GD  AV    + +G  ++ Q D  G TALH AA+  + D    LL+  AD ++  +   T
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 191 PLALATK 197
           PL  A  
Sbjct: 61  PLHAAVS 67

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.4 bits (171), Expect = 8e-14
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
           L  A+     +A   L+    D N Q D  G T LH A     + +   L+++ A D   
Sbjct: 29  LHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 184 LTSKEETPLALATK 197
                 TPL LA +
Sbjct: 88  RMHDGTTPLILAAR 101

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.2 bits (168), Expect = 3e-13
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS 182
           L  A+  G +E    L+    + +   D         A +R   DIV  L ++   +S
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.0 bits (157), Expect = 7e-12
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A           L+     D++A+   +G T L  AA+   + ++  L+   AD + 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 184 LTSKEETPLALATK 197
           +    ++ L  A  
Sbjct: 121 VDDLGKSALHWAAA 134

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A   G  + V  L ++  I++N Q +  G TALH AA +G  DIV  LL  GA   L
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

Query: 184 LTSKEETPLALATKPE----VRILLGGEPGVTINTAD 216
              +++    +AT       ++   G         ++
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQG--TDAVRTLSN 203

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  + V  L++KG   + + ++    A   A       ++       A ++L 
Sbjct: 144 LHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202

Query: 185 TSKEETPLALA 195
            +++      +
Sbjct: 203 NAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
              +     +  Q   +    LH AAKRG    +   L +    + L     T L  A  
Sbjct: 57  RTGLIPSNYVAEQ-AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115

Query: 197 ---KPEVRILLGGEPGVTINTAD 216
              K  V +L   +P + +N  +
Sbjct: 116 GGHKDIVEMLF-TQPNIELNQQN 137

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 12/96 (12%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           +  A    +     EL  +  DI         T       +G+  ++         +S  
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVAEQAES-- 72

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
               + PL  A        +R  L  +  V +N  D
Sbjct: 73  ---IDNPLHEAAKRGNLSWLRECL--DNRVGVNGLD 103

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 7/44 (15%), Positives = 11/44 (25%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
            G   +  A    +      L     D   +T   +T     T 
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS 54

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.4 bits (184), Expect = 6e-16
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  + V +L+    DINA  + +G   LH+A   GQ  +   L+ +GA  S+ 
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134

Query: 185 TSKEETPLALATK 197
               E P+  A  
Sbjct: 135 NKYGEMPVDKAKA 147

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.4 bits (184), Expect = 7e-16
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           +      G+  AV   +     D+N   D +G++ LHWA + G+  +V  L+  GA  ++
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
           +   ++TPL LA     +  V+ LL  +    IN  +
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLL--QYKADINAVN 102

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 1/45 (2%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGA-DKSLLTSKEETPLALATK 197
                +    + G    V   L +   D +       +PL  A +
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR 48

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.9 bits (188), Expect = 7e-16
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  +    L++   D++A  +++G + LH AA+  + D V   L   +D +L 
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206

Query: 185 TSKEETPLALATK 197
             + ETPL  A+ 
Sbjct: 207 NKEGETPLQCASL 219

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.5 bits (187), Expect = 1e-15
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  +    LV  G +I+     +  T L  AA+    + V YL+K GA     
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 185 TSKEETPLALATK 197
            ++  T L LA K
Sbjct: 74  DAEGSTCLHLAAK 86

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.2 bits (181), Expect = 5e-15
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           +  A+     + V  L+SKG DIN + D      LHWAA  G  DI   LL    D   +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173

Query: 185 TSKEETPLALATK 197
               ++PL +A +
Sbjct: 174 NIHGDSPLHIAAR 186

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.9 bits (175), Expect = 3e-14
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
           L EA+     EAV  L+  G  ++ + D  G T LH AAK+G  ++V YLL +G  D + 
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                 TP+  AT       V++LL    G  IN  D
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLL--SKGSDINIRD 141

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 4e-14
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A+  G +E V  L+S G +D+N Q D  GWT + WA +    D+V  LL  G+D ++
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

Query: 184 LTSKEETPLALATK 197
             ++E   L  A  
Sbjct: 140 RDNEENICLHWAAF 153

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 3e-12
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A+    ++ V   +S+  D+  + +  G T L  A+   Q      + K   D
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 4e-12
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 145 IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           ++   +   N  + LH AA+ G  DI   L++ GA+    +  + TPL  A +
Sbjct: 2   MNFKME-HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE 53

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L +A+  G+ E V + V +  D +   +  G TALH A       IV +L+  GA+ +  
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
            S   TPL  A           L+  + G  I    
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALV--QHGAAIFATT 117

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.7 bits (179), Expect = 9e-15
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 24/140 (17%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA--KRGQKDIVSYLLKHGADKS 182
           L  A+   D      LV  G  I A    +G TA       + G  D  +YL        
Sbjct: 91  LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150

Query: 183 LLTSKEETPLALATK---PEVRILLGGEPGVTINTAD---------------LPIVP-NY 223
           L+ S     L   +     E+    G    VT+   D                  VP NY
Sbjct: 151 LMNSGAVYALWDYSAEFGDELSFREGE--SVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

Query: 224 IKNEP-LDPRVNDYQVSNQN 242
               P + P+ +  +  + +
Sbjct: 209 FGLFPRVKPQRSKVKHHHHH 228

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 140 LVSKGIDINA--QHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
           ++ K        +  +N    L  AA  G+ ++V   +K   D S    +  T L  A  
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63

Query: 197 ---KPEVRILLGGEPGVTINTAD 216
                 V  L+    G  +N+ D
Sbjct: 64  GANYSIVDFLI--TAGANVNSPD 84

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L ++S  G+F+ V  ++ +  D +   +  G TALH A   G  +IV +L++ G + +  
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99

Query: 185 TSKEETPLALA 195
            S   TPL  A
Sbjct: 100 DSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A C G  E V  LV  G+++NA  D +GWT LH AA      +  +L++ GA    +
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132

Query: 185 TSKEE---TPLALATK 197
           T  +           +
Sbjct: 133 TYSDMQTAADKCEEME 148

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L         +   E ++ G+ +    +      L  ++  G+ D+V  ++    D SL 
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
             +  T L  A        V+ L+  + GV +N AD
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAAD 100

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 2/72 (2%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQ--HDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT 185
           A+   + +    LV  G  + A    DM          + G      +L        ++ 
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169

Query: 186 SKEETPLALATK 197
                 L     
Sbjct: 170 KGVIYALWDYEP 181

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGE 207
           ++ G  +L    +   +   S  + HG             L  ++       V+ ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRII--Y 58

Query: 208 PGVTINTAD 216
                +  +
Sbjct: 59  EVDDPSLPN 67

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
             E    G  +    L      +   +      AL     +   ++    +K G   +++
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNK-GVIYALWDYEPQNDDEL---PMKEGDCMTII 198

Query: 185 TSK--EETPLALA 195
             +  +E     A
Sbjct: 199 HREDEDEIEWWWA 211

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 1e-15
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
               G      EL+ +G   N Q D +G + +H AA+ G  D +  L++HGAD ++    
Sbjct: 42  VMMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 188 EETPLALA 195
              P+ LA
Sbjct: 101 GALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.7 bits (177), Expect = 4e-15
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A+  GD + V  L+  + +  +A  +  G TAL      G   I   LLK GA  ++
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQGASPNV 63

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
             +   +P+  A        +++L+  E G  +N  D
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLV--EHGADVNVPD 98

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.2 bits (168), Expect = 6e-14
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + +A+  G  + +  LV  G D+N   D  G   +H A + G   +VS+L    +D    
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR 129

Query: 185 TSKEETPLALATK 197
            ++  TPL LA +
Sbjct: 130 DARGLTPLELALQ 142

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           V   ++   D++ + D  G T L  A +RG +D+V  L  H
Sbjct: 116 VVSFLAAESDLHRR-DARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 155 GWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV 210
               L  AA RG    V  LL +       L    +T L +           LL  + G 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGA 59

Query: 211 TINTAD 216
           + N  D
Sbjct: 60  SPNVQD 65

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G D+NA  D  G+T LH AA  G  +I   LLKHGAD +  
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109

Query: 185 TSKEETPLALATK 197
               +T   ++  
Sbjct: 110 DKFGKTAFDISIG 122

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L EA+  G  + V  L++ G D+NA+ D  G T L+ A   G  +IV  LLK+GAD + +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 185 TSKEETPLALATK 197
            +   TPL LA  
Sbjct: 77  DAIGFTPLHLAAF 89

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.0 bits (152), Expect = 6e-12
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +G   +  H  +    L  AA+ GQ D V  L+ +GAD +       TPL LAT 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L  A+ +G  E    L+  G D+NAQ D  G TA   +   G +D+   L K 
Sbjct: 84  LHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           + EA+  G   ++  L+S+G  +N     +  + LH A   G    V  LLKHGA  + +
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
           T+   TPL  A      + V +LL  + G ++    
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLL--QHGASVQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A        V +L+  G D+N        + LH   +   +++   L+  GAD    
Sbjct: 194 LYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251

Query: 185 TSKEETPLALATK--PEVRILL 204
            ++ + P+ L     P  ++ L
Sbjct: 252 NAEGKRPVELVPPESPLAQLFL 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G ++ V  L+  G  +  + D    + +H AA+RG  + V+ L+ +G +    
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
            S   TPL LA     +  V+ LL  E G  +N   
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL--ESGADVNQGK 220

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT- 196
             L+S  +  +A    + W+ +H AA  G +  +  L+  G   +++T+   +PL  A  
Sbjct: 45  IRLLSNPLMGDAV---SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101

Query: 197 ---KPEVRILLGGEPGVTINTAD 216
                 V+ILL  + G  +N   
Sbjct: 102 GGHLSCVKILL--KHGAQVNGVT 122

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L         E  C L+  G D  A+ +  G   +           + +L + GA 
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAK-NAEGKRPVELVPPESPLAQL-FLEREGAS 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 23/70 (32%), Positives = 28/70 (40%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A    D E V  L   G D+N      G T LH A +     ++  LLK GAD +     
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 188 EETPLALATK 197
             TPL  A  
Sbjct: 225 GRTPLGSALL 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A        +  L+  G D  A+    G T L  A  R    +   L  HGA +      
Sbjct: 199 AVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

Query: 188 EETPLALATK 197
           + +P + +  
Sbjct: 258 KLSPCSSSGS 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 128 ASCLGDFEAVCELVSKGID---INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           A        +  L+        ++ Q +  G TALH AA  G+   V  L   GA   + 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 185 TSKEETPLALAT----KPEVRILLGGEPGVTINTADLPIVPNYIKNE 227
                T L LA          +LL   P    + +D  +  +     
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+ LG+   V +L + G  +    +  G TALH A +         LL+         S 
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 188 EETPLALATKPE 199
                +    P+
Sbjct: 111 TYLTQSQDCTPD 122

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           +    + E         + + A+ + +G T LH A      ++V  L   GAD +     
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190

Query: 188 E-ETPLALAT----KPEVRILLGGEPGVTINTAD 216
              TPL LA        + +LL  + G       
Sbjct: 191 CGRTPLHLAVEAQAASVLELLL--KAGADPTARM 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 147 INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATK---PE- 199
                  +G TALH A     +  + +LL   A    L  + +   T L LA        
Sbjct: 2   FGYV-TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 200 VRILLGGEPGVTINTAD 216
           V  L     G  +  A+
Sbjct: 61  VEKLY--AAGAGVLVAE 75

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 5/54 (9%), Positives = 12/54 (22%), Gaps = 1/54 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           L  A    +      L + G         +  +    +      D      ++ 
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEPED-GGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 16/109 (14%), Positives = 26/109 (23%), Gaps = 19/109 (17%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ---------HDMNGWT----ALHWAAKRGQKDIV 171
           L  A  +      C L+                   D    T    A   +    + +  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 172 SYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                             TPL +A        VR+L   + G  +N  +
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR--DAGADLNKPE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  +   G  E    L+  G ++N + ++ G T L  A+K G+ +IV  LL+ GAD S  
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 185 TSKEETPLALATK 197
                T  A A  
Sbjct: 164 DLTGLTAEASARI 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 7e-15
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A          +L+SKG ++N + D +G T L W+   G  ++  +LL+HGA+ +    +
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133

Query: 188 EETPLALATK 197
            ETPL +A+K
Sbjct: 134 GETPLIVASK 143

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.7 bits (177), Expect = 9e-15
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A  LG   A+ +LV     +  + D+ G TAL WA K  +  I   LL  G++ +  
Sbjct: 39  LMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 185 TSKEETPLALATK 197
               +TPL  +  
Sbjct: 98  DFSGKTPLMWSII 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 136 AVCELVSKGID--INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
              + +++ +D   N + D    T L  A   G ++ +  L+++         +  T L 
Sbjct: 15  KDEKSINQNLDFLRNYR-DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI 73

Query: 194 LATK 197
            A K
Sbjct: 74  WAVK 77

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.5 bits (148), Expect = 7e-11
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  AS  G  E V +L+  G DI+A+ D+ G TA   A   G+++++    +   
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEVIKIFTEVRR 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+     +    L      ++   D  G T L+ A      +I   L+  GAD +L 
Sbjct: 10  LEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 185 TSKEETPLALATK 197
            S  ++P   A  
Sbjct: 69  NSISDSPYLYAGA 81

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
           L  A    D E    L+ +G DIN Q +    +   +A  +G+ +I++Y+LKH   D + 
Sbjct: 43  LNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101

Query: 184 LTSKEETPLALATK 197
                   L  A +
Sbjct: 102 HNRYGGNALIPAAE 115

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.7 bits (164), Expect = 6e-13
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 125 LREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWAA-----KRGQKDIVSYLLKHG 178
           L  A+  G  + V  L+  G  DI+ Q +  G+TAL  A       +  +DIV  L+++G
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 179 ADKSLLTSKEETPLALATK 197
           AD+S+  +   T +  A +
Sbjct: 169 ADQSIKDNSGRTAMDYANQ 187

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKS 182
              A   G  E +  ++     D+N   +  G  AL  AA++G  D V  LL+ G  D  
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 183 LLTSKEETPLALATKPE---------VRILLGGEPGVTINTAD 216
                  T L  A             V++L+  E G   +  D
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLM--ENGADQSIKD 175

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L+  G D + + D +G TA+ +A ++G  +I   L ++
Sbjct: 164 LMENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGE 207
                  L  A +R  K +   L         + ++  TPL +A         + L+  +
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI--D 60

Query: 208 PGVTINTAD 216
            G  IN  +
Sbjct: 61  RGADINLQN 69

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.9 bits (175), Expect = 9e-15
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
              LG+ E    L+ +G + + + D  G+  +H AA+ G  D +  LL+  AD ++  ++
Sbjct: 44  VMKLGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102

Query: 188 EETPLALATK 197
              PL LA K
Sbjct: 103 GNLPLHLAAK 112

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.9 bits (170), Expect = 4e-14
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSL 183
           + +A+  G  + +  L+    D+N + D  G   LH AAK G   +V +L+KH A +   
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132

Query: 184 LTSKEETPLALATK 197
              K +T   LA  
Sbjct: 133 RNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  GD E +  L+   +++NAQ +  G TAL      G  +I   LL  GA+  L 
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66

Query: 185 TSKEETPLALATK 197
                  +  A +
Sbjct: 67  DRTGFAVIHDAAR 79

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.2 bits (150), Expect = 2e-11
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 125 LREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  A+  G    V  LV     ++  + +  G TA   A   G+ ++VS +  +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.9 bits (131), Expect = 6e-09
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--PE-VRILLGGEPGV 210
                L  AA RG  + ++ LL++  + +       T L +     PE  R LL    G 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL--LRGA 61

Query: 211 TINTAD 216
             +  D
Sbjct: 62  NPDLKD 67

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
            +G  +    L+  G + N   D    T  +H AA+ G  D +  L + GA   +  +  
Sbjct: 53  MMGSAQVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG 111

Query: 189 ETPLALATK 197
             P+ LA +
Sbjct: 112 RLPVDLAEE 120

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V +L+  G D NA  +  G   +      G   +   LL HGA+ +  
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA 73

Query: 185 TSKEET-PLALAT----KPEVRILLGGEPGVTINTAD 216
                T P+  A        + +L     G  ++  D
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLH--RAGARLDVCD 108

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           + +A+  G  + +  L   G  ++   D  G   +  A ++G +DI  YL     D
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--PE-V 200
              I+     +    L  AA RGQ + V  LL+ GAD + L      P+ +      +  
Sbjct: 2   SPGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVA 60

Query: 201 RILLGGEPGVTINTAD 216
            +LL    G   N AD
Sbjct: 61  ELLL--LHGAEPNCAD 74

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           +  A+  G  + V  L+  G+    Q +  G TALH A K G  D   YL   G   S  
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHS-- 80

Query: 185 TSKEETPLALATK 197
               + P+ LA  
Sbjct: 81  LWHGQKPIHLAVM 93

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 125 LREASCLGDFEAVCELV-----SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA 179
           L  A    + EA+  ++        + ++   +  G + LHWA     +D+    ++ G 
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 180 DKSLLTSKEETPLALATK 197
           D ++  ++   PL L+ +
Sbjct: 236 DVNMEDNEHTVPLYLSVR 253

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 1/68 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+     E +  L  K  ++       G        K+    +    L   A     +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRS-LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355

Query: 188 EETPLALA 195
                A++
Sbjct: 356 RARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.1 bits (170), Expect = 6e-13
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G  +    L S G   +     +G   +H A    + D+V  L++   +    
Sbjct: 57  LHLACKFGCVDTAKYLASVGEVHSLW---HGQKPIHLAVMANKTDLVVALVEGAKE---- 109

Query: 185 TSKEETPLALATK 197
             + + P +L  +
Sbjct: 110 --RGQMPESLLNE 120

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
                ++     D      +H AA++GQ D V  L++ G   ++      T L LA
Sbjct: 6   TDFPKLNRIKS-DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           A  +   +     V  GID+N + D      L+ + +     +   LL+    
Sbjct: 218 AILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-----KHGADKSLLTSKEETPLAL 194
           LV  G    A+ D    T L  A +   ++ +  ++     K          +  + L  
Sbjct: 159 LVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 195 AT----KPEVRILLGGEPGVTINTAD 216
           A     +      +  E G+ +N  D
Sbjct: 218 AILINWEDVAMRFV--EMGIDVNMED 241

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 18/108 (16%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ------------HDMNGWTALHWAAKRGQKDIVS 172
           L  +          EL+ K      Q              +     +  AA   +++++ 
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307

Query: 173 YLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
            L +   +     +          K   P   R+ L   P   + T  
Sbjct: 308 LLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL--APSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 31/122 (25%)

Query: 125 LREASCLGDFEAVCELVSKG---------------------IDINAQHDMNGWTALHWAA 163
           +  A      + V  LV                        I  + +H   G TALHW  
Sbjct: 88  IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCV 146

Query: 164 KRGQ--KDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEP---GVTINT 214
             G    +++  L++ GA  +     +ETPL  A     +  + +++   P    + ++ 
Sbjct: 147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 215 AD 216
           A+
Sbjct: 207 AN 208

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A    +   VC L++ G   N          LH AA      IV  LL  G D S    K
Sbjct: 38  AIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK 94

Query: 188 EETPLALAT----KPEVRILLGGEPGVTINTAD 216
             T L  A        V++ +  +    +    
Sbjct: 95  GNTALYYAVDSGNMQTVKLFV--KKNWRLMFYG 125

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
              A  L D   V   +S+             + +H   K G  D++  LL +    +  
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 185 TSKEETP-LALATK---PE-VRILLGGEPGVTINTAD 216
            S    P + LA      E ++ L   +  + I +A+
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALF--KYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGW-TALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A   G+ + V   V K   +       GW T+ + A       IVSY L        
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF- 156

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
             +   + + +         + +LL  +   + NT +
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLL--DYMTSTNTNN 191

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP 191
              + +        D     D++G +A ++A       +V  LL  GA K+    + E P
Sbjct: 10  WKSKQLKSF-LSSKDTFKA-DVHGHSASYYAIADNNVRLVCTLLNAGALKN--LLENEFP 65

Query: 192 LALATK---PE-VRILLGGEPGVTINTAD 216
           L  A      + V+ILL    G+  +  D
Sbjct: 66  LHQAATLEDTKIVKILL--FSGLDDSQFD 92

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 8/97 (8%), Positives = 26/97 (26%), Gaps = 15/97 (15%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSL 183
           +      G  + +  L+      N   +   +   +  A      +++  L K+  +   
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINI-- 221

Query: 184 LTSKEETPLALAT----KPEVRILLGGEPGVTINTAD 216
                 +              ++++  E  V   +  
Sbjct: 222 -----YSANLENVLLDDAEIAKMII--EKHVEYKSDS 251

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           ++ A    D E +  L    I+I         +A          +I   +++   +    
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 185 TSKEETPLALATK 197
           +  ++  +    K
Sbjct: 251 SYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 8/71 (11%)

Query: 118 VKYL-------EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
           ++ L            E   L D E    ++ K ++  +         +    K  +   
Sbjct: 211 LQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSD-SYTKDLDIVKNNKLDEIIS 269

Query: 171 VSYLLKHGADK 181
            +  L+     
Sbjct: 270 KNKELRLMYVN 280

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.4 bits (171), Expect = 3e-14
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWT-ALHWAAKRGQKDIVSYLLKHGADKSLLTSKE 188
            +G       L+  G + N   D    T  +H AA+ G  D +  L + GA   +  +  
Sbjct: 53  MMGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111

Query: 189 ETPLALATK 197
             P+ LA +
Sbjct: 112 RLPVDLAEE 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+  G + NA  +  G   +      G   +   LL HGA+ +  
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73

Query: 185 TSKEET-PLALATK---PE-VRILLGGEPGVTINTAD 216
                T P+  A +    + + +L     G  ++  D
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLH--RAGARLDVRD 108

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 141 VSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK--P 198
           +      +          L  AA RG+ + V  LL+ GA+ +   S    P+ +      
Sbjct: 1   MEPAAGSS---MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA 57

Query: 199 E-VRILLGGEPGVTINTAD 216
               +LL    G   N AD
Sbjct: 58  RVAELLL--LHGAEPNCAD 74

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 125 LREASCLGDFEAV--------CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
           L   +     E           E ++ G D+NA  D +  T L  A    ++ +V+YL+K
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMK 187

Query: 177 HGADKSLLTSKEETPLALAT----KPEVRILLG-GEPGVTINTAD 216
            GAD ++    E + L  A        +  +L   +    I   D
Sbjct: 188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 125 LREASCLGDFEAVCELVS-KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
           L  A+ + +   V  LV  KG + + Q D +G T +  AA+ G+ ++V YL++ GA    
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQ-DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341

Query: 184 LTSKEETPLALATK 197
           + + + T   LA  
Sbjct: 342 VDATDHTARQLAQA 355

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           A+  G  E V  L+ +G  + A  D    TA   A      +IV    +   ++
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 130 CLGDFEAVCELVSKGIDINAQH-------DMNGWTALHWAAKRGQKDIVSYLLKH-GADK 181
                 +   LV KG  ++             G TALH+AA+     IV YL+   G++K
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

Query: 182 SLLTSKEETPLALATK 197
                  +TP+ LA +
Sbjct: 307 DKQDEDGKTPIMLAAQ 322

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 8/103 (7%)

Query: 84  MPDGHGSIVNGMENTHLNSARLPFSVLGVS-DMDRVKYLEEQ-----LREASCLGDFEAV 137
           MP       N   +  + S++           + R +   +        +    G+    
Sbjct: 18  MPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 138 CELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
               +         +      LH  A  G   I   + +   +
Sbjct: 78  DFNHTNLQIPTEP-EPESPIKLHTEAA-GSYAITEPITRESVN 118

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH--------GA 179
               G +     +  + ++I      +  T LHW A     +    L+ H        GA
Sbjct: 100 TEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 157

Query: 180 DKSLLTSKEETPLALATK 197
           D + +   E TPL LA  
Sbjct: 158 DVNAMDCDENTPLMLAVL 175

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 125 LREASCLGDFEAVCELVSK---GIDINAQHDMNGWTALHWAAKRGQKD---IVSYLLKHG 178
           L +A+   DF  +  +++      DI    D NG TAL   A    +D       L++ G
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 179 AD--KSLLTSKEE------TPLALAT----KPEVRILLGGEPGVTINTAD 216
           A         K+       T L  A      P V+ L+ GE G   +  D
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV-GEKGSNKDKQD 310

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 3/61 (4%), Positives = 8/61 (13%), Gaps = 1/61 (1%)

Query: 137 VCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT 196
                      N                 G   +  +   +    +    +    L    
Sbjct: 44  ASYDGYIKRQRNEL-QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA 102

Query: 197 K 197
            
Sbjct: 103 A 103

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 128 ASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
            +  G  + + E +++         D +  TALHWA   G  +IV +LL+ G   +    
Sbjct: 13  LAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71

Query: 187 KEETPLALA 195
              +PL +A
Sbjct: 72  AGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A   G  E V  L+  G+ +N + D  GW+ LH AA  G  +IV  LL  GA  + +
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 185 TSKEETPLALATK------PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV---ND 235
                TPL  A          + +  G  P    +     +     K       +     
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 236 YQVSNQNRTHQTNPVTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIV 292
              + Q+    T    A           +V    +      + K+   V      ++
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 5/45 (11%), Positives = 13/45 (28%)

Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           ++     + A      ++   +L   +  +       T L  A  
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS 49

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 86  DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI 145
               ++       +L    +       S   +       L  A      E    LV++G 
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
            I  + +    T L  A   G   ++   L  G +
Sbjct: 197 SIYIE-NKEEKTPLQVAK--GGLGLILKRLAEGEE 228

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 8e-14
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
           E      +  +++N   D +G T LHW       ++V +L+KHG+++    +  E+ L  
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170

Query: 195 ATK 197
           A K
Sbjct: 171 AVK 173

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 62.4 bits (151), Expect = 6e-11
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
                     E +         +NAQ D NG T L+ AA+ G   IV  LL +GAD  + 
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQ-DSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 185 TSKEETPLALA 195
                 P+   
Sbjct: 313 NKSGLRPVDFG 323

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 128 ASCLGDFEAVCE-LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
           A+   D +A+ + L  +G +++ +    G TALH AA     +    L++   +      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68

Query: 187 KE-----ETPLALATK---PE-VRILLGGEPGVTINTAD 216
                  +T L +A        VR LL    G +++   
Sbjct: 69  TSELYEGQTALHIAVINQNVNLVRALL--ARGASVSARA 105

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ------------HDMNGWTALHWAAKRGQKDIVS 172
           L  A    +   V  L+++G  ++A+                G   L +AA  G ++IV 
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 173 YLLKHGADKSLLTSKEETPLALATK 197
            L++HGAD     S   T L +   
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHILIL 163

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQH----DMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A+   + EA   L+    ++  +        G TALH A      ++V  LL  GA 
Sbjct: 41  LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)

Query: 140 LVSKGIDINAQ-----HDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L+S     + +      +  G T    A   G   +  +L++    
Sbjct: 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 153 MNGWTALHWAAKRGQKDIVS-YLLKHGADKSLLTSKEETPLALATK 197
           M   + L  AAK      +S  L   G +     +  ET L +A  
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMN--GWTALHWAAKRGQKDIVSYLLKHGADKS 182
           +  A+ LG +E   EL  KG +       +   +  L       +  I  +L+  GAD  
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

Query: 183 LLTSKEETPLALA----------TKPEVRILLGGEPGVTINTAD 216
             T +  T               T    +I L  E G  I    
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFL--EKGADITALY 111

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
               G+ +  + D  G TAL +  +  +   +  +  +   
Sbjct: 140 FSQSGLQLLIK-DKWGLTALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 14/96 (14%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVS-------YLLKHGADKSLL 184
           G  E     + KG DI A         +         D             + G    + 
Sbjct: 92  GTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150

Query: 185 TSKEETPLALATK---PE-VRILLGGEPGVTINTAD 216
                T L    +   P  ++++   +     N  +
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMME--DYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 9/71 (12%)

Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATKPE----VRILLG 205
           M+ +  +  AA  G  +    L + G +      K       L              L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI- 62

Query: 206 GEPGVTINTAD 216
              G  I +  
Sbjct: 63  -NKGADIKSRT 72

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 94  GMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDM 153
            +   H N               + + +        C    + +C L++    +      
Sbjct: 68  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA- 126

Query: 154 NGWTALHWAAKRGQKDIVSYLLKHGADK--SLLTSKEETPLALA 195
             + A   AA+ G   +++ L +    +  +++ ++      LA
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 17/97 (17%)

Query: 116 DRVKYLEEQ--------------LREASCLGDFEAVCELVSKGIDIN-AQHDMNGWTALH 160
           D +  L                  R A+  G    +  L         A      + A  
Sbjct: 109 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168

Query: 161 WAAKRGQKDIVSYLLKHGADKSL--LTSKEETPLALA 195
            AA+ G   +++ L +    ++   + ++       A
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 4/57 (7%)

Query: 141 VSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
           +            +    L  A + G +   + LL   +  +L    +     +   
Sbjct: 306 IKALAPTATI-PGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANNYYINET 358

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
           + +       V  ++  G  ++A+   +G TALH+AA   Q D +  LLK  A    +  
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257

Query: 187 KEETPLALATKP 198
             ET L +A K 
Sbjct: 258 AGETALDIARKK 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 93/564 (16%), Positives = 172/564 (30%), Gaps = 210/564 (37%)

Query: 11  IAQDMDDDFIEIELNRLTELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVAR 70
           I    +D F++               N  CK++  D P++IL   ++ + I+ KD     
Sbjct: 21  ILSVFEDAFVD---------------NFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 71  LTMF------QE------IELVL--------------SQMPDGHGSIVNGMENTHLNSAR 104
           L +F      QE      +E VL               + P     +     +   N  +
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 105 LPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCEL-VSKGIDINAQHDMNG----WTAL 159
             F+   VS   R++    +LR        +A+ EL  +K + I     + G    W AL
Sbjct: 125 -VFAKYNVS---RLQ-PYLKLR--------QALLELRPAKNVLI---DGVLGSGKTWVAL 168

Query: 160 ----------------HWAAKRGQKDIVSYLLK------HGADKSLLTSKE---ETPLAL 194
                            W       +    +L+      +  D +  +  +      L +
Sbjct: 169 DVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 195 -ATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN----QNRTHQTNP 249
            + + E+R LL  +P        L +         L   V + +  N      +      
Sbjct: 228 HSIQAELRRLLKSKPYEN----CLLV---------LL-NVQNAKAWNAFNLSCKI----- 268

Query: 250 VTANQNVVTTSHHSIVNHSTTNTPAQLDGKSADVVTTSHHSIVNHSTANTPAQLDELVLK 309
                 ++TT    + +                  TT+H S+ +HS   TP ++  L+LK
Sbjct: 269 ------LLTTRFKQVTD-------------FLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 310 VRIAQDMDD-----------------DFIEIELNRLTELTYYSLLNICCKELNIDSPQTI 352
             +     D                 + I   L        +       K +N D   TI
Sbjct: 310 Y-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNW-------KHVNCDKLTTI 358

Query: 353 LK--IRKLPNTIIRK--------DKDV----ARLTMF------QEIELVLSQMPDGHGSI 392
           ++  +  L     RK                  L++        ++ +V++++     S+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSL 416

Query: 393 VN--GMENT-HLNSARLPFSAKGVNNYPSIHNTKITRFCTRTTEEIPVCGVHDPLGSLQG 449
           V     E+T  + S  L    K + N  ++H + +  +       IP     D       
Sbjct: 417 VEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHY------NIPKT--FDS------ 461

Query: 450 ENDIIPGLED---------HFSAA 464
            +D+IP   D         H    
Sbjct: 462 -DDLIPPYLDQYFYSHIGHHLKNI 484

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 125 LREASCLGD---FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           L  A    D      V  LV    +++ Q    G TALH+       + +  LL+  A  
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 182 SLLTSKEETPLALATK 197
            +     ETPL +A +
Sbjct: 232 EIANESGETPLDIAKR 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L      G  +    L           +  G T L  AAK G+ +I  ++L+    
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 125 LREASCLGDFEAVCELVSKGI---DINAQ---------------HDMNGWTALHWAAKRG 166
           L  A+C   ++ V  L+        + A                 +    +AL      G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 167 QKDIVSYLLKHGADKSLLTSKEETPLALATK 197
              + + L      + +   +  TPL LA K
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 27/119 (22%)

Query: 116 DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL 175
             +  L +  +++                     +    G +ALH A ++     V  L+
Sbjct: 60  ACIMPLLQIDKDSGNPKPL--------VNAQCTDE-FYQGHSALHIAIEKRSLQCVKLLV 110

Query: 176 KHGADKSLLTSKE-------------ETPLALATK---PE-VRILL-GGEPGVTINTAD 216
           ++GAD  L                  E PL+LA      + V  LL       ++   D
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 123 EQLREASCLGDFEAVCELVSKGI-------DINAQHDMNGWTALHWAA---KRGQKDIVS 172
           ++L      G  E +  L+           D        G T L  A    + G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 173 YLLKHGADK 181
            LL+   D 
Sbjct: 64  PLLQIDKDS 72

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 29/114 (25%)

Query: 132 GDFEAVCELVSKGIDINAQH----------DMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           G  + +  L+      ++               G TALH A +R    +V+ L+++GAD 
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 182 --------------SLLTSKEETPLALATK---PE-VRILLG-GEPGVTINTAD 216
                                E PL+LA        V+ LL        I+  D
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
               +L           +  G T L  AA  G+  +++Y+L+           E      
Sbjct: 214 ILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 195 ATK 197
           A  
Sbjct: 266 AAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELV-------SKGIDINAQHDMNGWTALHWA 162
           +   +     Y    + +A    + + +  L+        +  D   +    G T L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 163 ---AKRGQKDIVSYLLKHGADKSLLT-----------SKEETPLALAT----KPEVRILL 204
                 GQ D ++ LL        L             K +T L +A        V +L+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 205 GGEPGVTINTAD 216
             E G  +  A 
Sbjct: 122 --ENGADVQAAA 131

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 20/92 (21%)

Query: 125 LREASCLGDFEAVCELVSKGI---DINAQHDMNGWTALHWAAKRGQKDIVS--------- 172
           L  A+C      V  L+       DI+A+ D  G T LH   +     + +         
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 173 -------YLLKHGADKSLLTSKEETPLALATK 197
                   L      + +   K  TPLALA  
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAAS 242

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L +A+      A   L+  G ++N   D  G   LH A   G   +    LK GAD    
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297

Query: 185 TSKEETPLALA 195
            S+   PL +A
Sbjct: 298 DSEGRDPLTIA 308

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 114 DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDM-NGWTALHWAAKRGQKDIVS 172
           D+  +       R +        + + ++ G D+N  +   +  T L  A          
Sbjct: 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACE 252

Query: 173 YLLKHGADKSLLTSKEETPLALATK 197
           +LL++GA+ +   S    PL  AT 
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATI 277

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 22/104 (21%)

Query: 135 EAVCELVSKGIDINAQH---DMNGWTALHWAAKRGQKDIVSYLLKHGAD----------- 180
           +   +  +    IN+        G TALH A +R  K  V  L++ GAD           
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 181 ---KSLLTSKEETPLALATK---PE-VRILLG-GEPGVTINTAD 216
              +       E PL+LA     P  V  L   G     +   D
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 140 LVSKGIDINAQ------HDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L+ K   +          + +G + L  AAK G+  I  ++++    
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 20/89 (22%)

Query: 128 ASCLGDFEAVCELVSKGI---DINAQHDMNGWTALHWAA---------KRGQKDIVSYLL 175
           A+C      V  L   G    D+  Q D  G T LH             +    +   LL
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205

Query: 176 KHGADKSLLTSKEE-------TPLALATK 197
              A     T+ E        +PL +A K
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 10/71 (14%)

Query: 120 YLEEQLREASCLGDFE---AVCE-LVSKGIDINA---QHDMNGWTALHWAA---KRGQKD 169
           +    L +    G  +    +   L++    +     +    G T L  A      G+ D
Sbjct: 4   FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 170 IVSYLLKHGAD 180
            +  LL     
Sbjct: 64  TIPILLDIAEK 74

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 127 EASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTS 186
           + +       V  ++  G  ++A+   +G TALH+AA   Q D +  LLK  A    +  
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238

Query: 187 KEETPLALATKPE 199
             ET L +A K  
Sbjct: 239 AGETALDIARKKH 251

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 12/102 (11%)

Query: 115 MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH-----DMNGWTALHWAAKRGQKD 169
             R     ++L  A C  D  +V E  + G D                 LH A K   + 
Sbjct: 126 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 185

Query: 170 ---IVSYLLKHGADKSLLTSKEETPLALAT---KPE-VRILL 204
              +V +++++G       +   T L  A    +P+ +++LL
Sbjct: 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	464
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.86
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.86
2pnn_A	273	Transient receptor potential cation channel subfa	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.78
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.62

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=3.1e-27  Score=216.46  Aligned_cols=154  Identities=26%  Similarity=0.256  Sum_probs=127.4

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      ++|+.||+.|+.++|+.|++. |++++.+|..|+||||+|+..++.+++++|+++|++++.++. .|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-CCCCHHHHHHHcCCH
Confidence            358889999999999999988 899999999999999999999999999999999999998854 899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCC
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRT  244 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~  244 (464)
                      +++++|+++|+++|.+|.+|+||||+|+   +.+++++|...+......+..+.||+++|...++.++.++|+++++..
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            9999999999999999999999999986   567777774443333455677889999999889999999888776543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=7.4e-27  Score=224.24  Aligned_cols=212  Identities=19%  Similarity=0.126  Sum_probs=147.8

Q ss_pred             cCCChHhHHHHHHHhc-------------CCCCHHHHHHhcCC----chhhhccchhHHHHhhhHHHHHHHhc-------
Q psy6441          28 TELTYYSLLNICCKEL-------------NIDSPQTILKIRKL----PNTIIRKDKDVARLTMFQEIELVLSQ-------   83 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~-------------~i~~~~~l~~~~~l----~~~~~~~~~~~a~l~~~~ei~~ll~~-------   83 (464)
                      .+..+.++|++|+..+             ..+.++.+......    .+....+..+.+...+..++...+.+       
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   85 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI   85 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            4566888999988755             45444444443322    23344566777777666665554433       


Q ss_pred             -CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          84 -MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        84 -~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                       +..|.||||+|+..|+.+++++|++....+++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A  164 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWA  164 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TSCBHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CCCCHHHHH
Confidence             257889999999999999999999983348889999999999999999999999999999999999854 899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++.++..++..
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999996   5577777754433334556778899999999999999998874


Q ss_pred             C
Q psy6441         240 N  240 (464)
Q Consensus       240 n  240 (464)
                      .
T Consensus       245 ~  245 (253)
T 1yyh_A          245 E  245 (253)
T ss_dssp             -
T ss_pred             H
Confidence            3

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=4.5e-26  Score=219.26  Aligned_cols=206  Identities=15%  Similarity=0.053  Sum_probs=131.8

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcch
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPF  107 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL  107 (464)
                      .+-.+.++|++||.....+.++.+.....-+.                   .+...+..|.||||+|+..|+.+++++|+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   65 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------------YLDLQNDLGQTALHLAAILGEASTVEKLY   65 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-------------------cccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34567899999999988876666655332211                   01223456777777777777777777777


Q ss_pred             hhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCC-----------------------------------------
Q psy6441         108 SVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID-----------------------------------------  146 (464)
Q Consensus       108 ~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gad-----------------------------------------  146 (464)
                      +. |++++..+..|+||||+|+..|+.+++++|+++|++                                         
T Consensus        66 ~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (282)
T 1oy3_D           66 AA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD  144 (282)
T ss_dssp             HT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------C
T ss_pred             Hc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhh
Confidence            76 777777777777777777777777777777766544                                         


Q ss_pred             ------cccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCchhHhhc---cHHHHHHHhCCCCCcccCCC
Q psy6441         147 ------INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK-EETPLALAT---KPEVRILLGGEPGVTINTAD  216 (464)
Q Consensus       147 ------vn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~-G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~  216 (464)
                            ++.++ ..|+||||+|+..|+.+++++|+++|++++.++.. |+||||+|+   +.+++++|...+......+.
T Consensus       145 ~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          145 EDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             CCGGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhhhcCCCcC-CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence                  45553 36777777777777777777777777777776643 777777774   44566665433332244455


Q ss_pred             CCCCcccccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy6441         217 LPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQN  255 (464)
Q Consensus       217 ~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p  255 (464)
                      .+.||+++|...++..+.++|+.++.....+. ..+.+|
T Consensus       224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~tp  261 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDG-GDKLSP  261 (282)
T ss_dssp             TSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC-Cccccc
Confidence            66677777777777777777777766655555 334444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=4.5e-26  Score=214.65  Aligned_cols=211  Identities=16%  Similarity=0.079  Sum_probs=164.2

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHh-------cCCchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKI-------RKLPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIV   92 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~-------~~l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh   92 (464)
                      .+-.+.++|++||....++.++.+...       ....+....+..+.+...+..++...+.+        +..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   84 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            345678999999999998877776651       12333445567777777766666554443        357889999


Q ss_pred             hhhhcCChhhhhcchhhcCC----CcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          93 NGMENTHLNSARLPFSVLGV----SDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        93 ~Aa~~G~~~iVk~LL~~~ga----~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      +|+..|+.+++++|++. +.    +++..+..|+||||+|+..|+.+++++|+++|++++..+...|+||||+|+..|+.
T Consensus        85 ~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence            99999999999999988 65    78888889999999999999999999999999999988645899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++.++.+.+.+
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            9999999999999999999999999996   4577777744333334456678899999998888888776553

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=1.6e-25  Score=205.01  Aligned_cols=122  Identities=35%  Similarity=0.433  Sum_probs=115.8

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|. +|+||||+|
T Consensus        33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A  110 (169)
T 4gpm_A           33 SDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHA  110 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHH
Confidence            357899999999999999999999999 999999999999999999999999999999999999999965 999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|..
T Consensus       111 ~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A          111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999996   6788888843

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=8.4e-25  Score=206.07  Aligned_cols=208  Identities=17%  Similarity=0.073  Sum_probs=162.6

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      .+..+.++++.|+....++.++.+.....   .......+..+.+...+..++...+.+        +..|.||||+|+.
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence            45667899999999999987777776543   222334466777777666665554433        2568889999999


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .|+.+++++|++....+++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|++
T Consensus        87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999883388888888899999999999999999999999999988854 88999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         177 HGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      +|++++.+|..|+||||+|+   +.+++++|...+......+..|.||+++|....+......
T Consensus       166 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~  228 (237)
T 3b7b_A          166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ  228 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999985   5577777754444335556778899999988888754443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=220.11  Aligned_cols=200  Identities=17%  Similarity=0.078  Sum_probs=150.9

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCch-----------hhhccchhHHHH-hhhHHH-HHHHh-------cCCCCC
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPN-----------TIIRKDKDVARL-TMFQEI-ELVLS-------QMPDGH   88 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~-----------~~~~~~~~~a~l-~~~~ei-~~ll~-------~~~~g~   88 (464)
                      +....++|..||..+.++.++.++.......           .......+.+.. .....+ ..++.       .+.+|+
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~   87 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGS   87 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSC
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCC
Confidence            4455678999999999887777765432111           111122222222 112222 22222       346899


Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      ||||+|+..|+.++|++|++. |++++..+..|.||||+|+..++.+++++|++.|+++|.+|. .|+||||+||..|+.
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~-~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL-SGNTPLIYACSGGHH  165 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCG
T ss_pred             CHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCH
Confidence            999999999999999999998 999999999999999999999999999999999999999954 999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCc
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLD  230 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h  230 (464)
                      +++++|+++|+|+|.+|..|+||||+|+   +.+++++|...+......+..|.||+++|+...+
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999999999996   5678888754433334566788999999988776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=2.7e-25  Score=208.71  Aligned_cols=206  Identities=17%  Similarity=0.077  Sum_probs=127.6

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcC----CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRK----LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTH   99 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~----l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~   99 (464)
                      ...+++.|+..+.++.++.+.....    ..+....+..+.+...+..++...+.+        +..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            4567888888888876666655332    122233344555555444444333322        2456677777777777


Q ss_pred             hhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy6441         100 LNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA  179 (464)
Q Consensus       100 ~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GA  179 (464)
                      .+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|+
T Consensus        86 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~  163 (231)
T 3aji_A           86 DEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKA  163 (231)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            7777777766 667766666677777777777777777777777777766643 66777777777777777777777777


Q ss_pred             CCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         180 DKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       180 din~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|....+..+.+++..
T Consensus       164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            77777777777777764   3455555533322223445556677776666666666665543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=1.6e-25  Score=205.67  Aligned_cols=157  Identities=17%  Similarity=0.048  Sum_probs=142.2

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ..+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~  107 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMW  107 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHH
Confidence            4567999999999999999999999999 999999999999999999999999999999999999999955 99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.++|.
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999996   567887775443333455678889999999999999999887


Q ss_pred             hC
Q psy6441         239 SN  240 (464)
Q Consensus       239 sn  240 (464)
                      +.
T Consensus       188 ~~  189 (192)
T 2rfm_A          188 EV  189 (192)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=3.5e-25  Score=213.06  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=51.6

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCC---cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVS---DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~---~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      +.+|+||||+|+..|+.++|++|++. |++   ++.++..|+||||+|+..|+.+++++|+++|++++.++. .|+||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~   83 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALH   83 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHH
Confidence            34555555555555555555555555 444   445555555555555555555555555555555555532 5555555


Q ss_pred             HHHHcCCHHHHHHHHHCCC
Q psy6441         161 WAAKRGQKDIVSYLLKHGA  179 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GA  179 (464)
                      +|+..|+.+++++|+++|+
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~  102 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRP  102 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHcCCcchhHhhhccCC
Confidence            5555555555555555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=5.6e-25  Score=205.73  Aligned_cols=183  Identities=19%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             HhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC-
Q psy6441          33 YSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG-  111 (464)
Q Consensus        33 ~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g-  111 (464)
                      .++++.||.....+.++.+........                     ...+..|.||||+|+..|+.+++++|++. | 
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~   60 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLL---------------------LQKDQDGRIPLHWSVSFQAHEITSFLLSK-ME   60 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGT---------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CT
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCcccc---------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cc
Confidence            467888888888776666554332110                     01233445555555555555555555544 4 


Q ss_pred             -CCccc-ccchhhhHHHHHHhcCCHHHHHHHHHCC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy6441         112 -VSDMD-RVKYLEEQLREASCLGDFEAVCELVSKG--IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK  187 (464)
Q Consensus       112 -a~~~~-~d~~G~TpLh~Aa~~G~~eiVk~LL~~G--advn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~  187 (464)
                       .+++. .+..|+||||+|+..|+.+++++|+++|  ++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        61 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  139 (228)
T 2dzn_A           61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF  139 (228)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             cccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC
Confidence             33333 3444455555555555555555555544  44444422 4555555555555555555555555555555555


Q ss_pred             CCchhHhhc---cHHHHHHHhCCC-CCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         188 EETPLALAT---KPEVRILLGGEP-GVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       188 G~TPLh~A~---~~~i~~LL~~~~-~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      |+||||+|+   +.+++++|...+ ......+..+.||+++|...++..+.++|+
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555543   234444443322 111223344445555555445555444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=1.6e-25  Score=225.53  Aligned_cols=220  Identities=11%  Similarity=0.037  Sum_probs=182.2

Q ss_pred             hhcccccCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhcC------CCCCcchh
Q psy6441          22 IELNRLTELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQM------PDGHGSIV   92 (464)
Q Consensus        22 vei~rl~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~~------~~g~TpLh   92 (464)
                      ++... .+..+.++|++|+....++.++.+.....   ..+....+.++.+...+..++..++...      .+|.||||
T Consensus        11 ~~~~~-~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~   89 (364)
T 3ljn_A           11 LNRIK-SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH   89 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred             CCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence            34444 45668999999999999998888887542   3344456778888888777776665442      38999999


Q ss_pred             hhhhcCChhhhhcchhhc---CCCccc-----------------ccchhhhHHHHHHhcC--CHHHHHHHHHCCCCcccc
Q psy6441          93 NGMENTHLNSARLPFSVL---GVSDMD-----------------RVKYLEEQLREASCLG--DFEAVCELVSKGIDINAQ  150 (464)
Q Consensus        93 ~Aa~~G~~~iVk~LL~~~---ga~~~~-----------------~d~~G~TpLh~Aa~~G--~~eiVk~LL~~Gadvn~~  150 (464)
                      +|+..|+.+++++|++..   |++++.                 .+..|+||||+|+..|  +.+++++|+++|++++.+
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            999999999999999862   555555                 8889999999999999  999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcc
Q psy6441         151 HDMNGWTALHWAAKRGQKDIVSYLLKHGAD-----KSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPN  222 (464)
Q Consensus       151 dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd-----in~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl  222 (464)
                      +. .|+||||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+   +.+++++|...+......+..+.||+
T Consensus       170 d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          170 DK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             CT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            54 999999999999999999999999999     9999999999999996   56888888554444455677899999


Q ss_pred             cccCCCCcHHHHHHHHhCCCC
Q psy6441         223 YIKNEPLDPRVNDYQVSNQNR  243 (464)
Q Consensus       223 ~laa~~~h~a~~~~l~sn~~~  243 (464)
                      ++|+..++..++++|+.++..
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHHhChHHHHHHHHHcCCc
Confidence            999999999999999977544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=2.9e-25  Score=210.12  Aligned_cols=197  Identities=18%  Similarity=0.077  Sum_probs=160.8

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      +..+.++|++|+.....+.++.+.......      .            ..+...+..|.||||+|+..|+.+++++|++
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   66 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGD------L------------AFLNFQNNLQQTPLHLAVITNQPEIAEALLG   66 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----------C------------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhcc------H------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            345778999999888876443332211000      0            0112335689999999999999999999999


Q ss_pred             hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID------INAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       109 ~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gad------vn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin  182 (464)
                      . |++++..+..|+||||+|+..|+.+++++|++.|++      ++.. +..|+||||+|+..|+.+++++|+++|++++
T Consensus        67 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  144 (236)
T 1ikn_D           67 A-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSLGADVN  144 (236)
T ss_dssp             C-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC-CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             c-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9 999999999999999999999999999999999976      4555 4489999999999999999999999999999


Q ss_pred             CCCC-CCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCC
Q psy6441         183 LLTS-KEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTH  245 (464)
Q Consensus       183 ~~D~-~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~  245 (464)
                      .++. .|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.++|++++..+.
T Consensus       145 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9998 9999999996   5688888865544445567789999999999999999999998876544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=1.1e-25  Score=226.84  Aligned_cols=211  Identities=15%  Similarity=0.126  Sum_probs=175.1

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchh-hhccchhHHHHhhhHHHHHHHh------------------------
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNT-IIRKDKDVARLTMFQEIELVLS------------------------   82 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~-~~~~~~~~a~l~~~~ei~~ll~------------------------   82 (464)
                      .+..+.++|++|+.....+.++.+......... ...+..+.+...+..++...+.                        
T Consensus        49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  128 (364)
T 3ljn_A           49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE  128 (364)
T ss_dssp             CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEE
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhh
Confidence            455678999999999999988888876654433 4567778887777666654443                        


Q ss_pred             -----cCCCCCcchhhhhhcC--ChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCC-----cccc
Q psy6441          83 -----QMPDGHGSIVNGMENT--HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGID-----INAQ  150 (464)
Q Consensus        83 -----~~~~g~TpLh~Aa~~G--~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gad-----vn~~  150 (464)
                           .+..|.||||+|+..|  +.++|++|++. |++++..|..|+||||+|+..|+.+++++|+++|++     ++.+
T Consensus       129 ~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  207 (364)
T 3ljn_A          129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA  207 (364)
T ss_dssp             ETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred             hccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Confidence                 3347999999999999  99999999999 999999999999999999999999999999999999     9998


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCC------------cccCC
Q psy6441         151 HDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV------------TINTA  215 (464)
Q Consensus       151 dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~------------~~~~~  215 (464)
                      +. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+   +.+++++|...+..            ....+
T Consensus       208 ~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  286 (364)
T 3ljn_A          208 NK-QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPD  286 (364)
T ss_dssp             CT-TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGG
T ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccc
Confidence            55 9999999999999999999999999999999999999999996   56888887433211            12244


Q ss_pred             CCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         216 DLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       216 ~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ..+++|++.++..++......++..
T Consensus       287 ~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          287 RVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             GCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             ccccccchhhhhccCHHHHHHHHHH
Confidence            5677888889988888766665533

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=6.8e-25  Score=204.80  Aligned_cols=192  Identities=22%  Similarity=0.186  Sum_probs=161.9

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      +..+.++++.|+.....+.++.+.....-+                      ...+..|.||||+|+..|+.+++++|++
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADA----------------------NIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCC----------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            456788999999998887666655432111                      1235689999999999999999999999


Q ss_pred             hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE  188 (464)
Q Consensus       109 ~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G  188 (464)
                      ....+++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            84448999999999999999999999999999999999999954 99999999999999999999999999999999999


Q ss_pred             CchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCC
Q psy6441         189 ETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNR  243 (464)
Q Consensus       189 ~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~  243 (464)
                      +||||+|+   +.+++++|...+......+..+.||+++|....+..+.++|...+..
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999996   56777777444333345567788999999999999999999977654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=3.5e-25  Score=198.56  Aligned_cols=153  Identities=18%  Similarity=0.026  Sum_probs=138.4

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      .|.||||.|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHc
Confidence            689999999999999999999999 999999999999999999999999999999999999999954 999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.+++.++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999999999999996   56788877544333345667788999999999999999988765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=8.5e-26  Score=218.66  Aligned_cols=200  Identities=18%  Similarity=0.112  Sum_probs=158.5

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhc---CChhhhhc
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMEN---THLNSARL  105 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~---G~~~iVk~  105 (464)
                      +..+.++|+.|+....++.++.+.....-......              ......+..|.||||+|+..   |+.++|++
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~   75 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT--------------DSEFKDPETGKTCLLKAMLNLHNGQNDTIAL   75 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT--------------SGGGSCTTTCCCHHHHHHHSCBTTBCHHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccC--------------CcccccCcCCCCHHHHHHHHHhcCChHHHHH
Confidence            34678999999999999877666542110000000              00112357899999999986   99999999


Q ss_pred             chhhcCCCc-----------ccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC-------------CCCCcHHHH
Q psy6441         106 PFSVLGVSD-----------MDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD-------------MNGWTALHW  161 (464)
Q Consensus       106 LL~~~ga~~-----------~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd-------------~~G~TpLH~  161 (464)
                      |++. |++.           ...|..|+||||+|+..|+.+++++|+++|++++.++.             ..|+||||+
T Consensus        76 Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~  154 (273)
T 2pnn_A           76 LLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL  154 (273)
T ss_dssp             HHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred             HHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHH
Confidence            9998 6542           22567899999999999999999999999999999854             269999999


Q ss_pred             HHHcCCHHHHHHHHH---CCCCCCCCCCCCCchhHhhcc------------HHHHHHHhC-CCCCc------ccCCCCCC
Q psy6441         162 AAKRGQKDIVSYLLK---HGADKSLLTSKEETPLALATK------------PEVRILLGG-EPGVT------INTADLPI  219 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~---~GAdin~~D~~G~TPLh~A~~------------~~i~~LL~~-~~~~~------~~~~~~~~  219 (464)
                      |+..|+.+++++|++   +|++++.+|..|+||||+|+.            .+++++|.. +...+      ...+..+.
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~  234 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL  234 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCC
Confidence            999999999999999   999999999999999999974            567776632 22221      23677889


Q ss_pred             CcccccCCCCcHHHHHHHHhCCCC
Q psy6441         220 VPNYIKNEPLDPRVNDYQVSNQNR  243 (464)
Q Consensus       220 tpl~laa~~~h~a~~~~l~sn~~~  243 (464)
                      ||+++|+..++..++++|++++..
T Consensus       235 TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          235 TPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhChHHHHHHHHHCCCC
Confidence            999999999999999999988874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=215.33  Aligned_cols=168  Identities=18%  Similarity=0.188  Sum_probs=137.2

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +.+|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.. + .|+||||+|+
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~-~g~t~L~~A~  165 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-S-DLASPIHEAA  165 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-C-TTSCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-C-CCCCHHHHHH
Confidence            46788999999999999999999988 8999999999999999999999999999999999988865 3 5899999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|... +++...+..+.||+++|+...+..+.++|+..
T Consensus       166 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999999999999999999999996   55777776433 23333466788999999999999999998888


Q ss_pred             CCCCCCCCCCCCCCCc
Q psy6441         241 QNRTHQTNPVTANQNV  256 (464)
Q Consensus       241 ~~~~~~~~p~~~~~p~  256 (464)
                      +.....+. ..+.+|.
T Consensus       245 gad~~~~d-~~g~t~l  259 (285)
T 3d9h_A          245 GADTQAKN-AEGKRPV  259 (285)
T ss_dssp             TCCTTCCC-TTSCCGG
T ss_pred             CCCCCCcC-CCCCCHH
Confidence            76665555 3344433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=6.8e-25  Score=196.28  Aligned_cols=156  Identities=20%  Similarity=0.200  Sum_probs=128.4

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +.+|.|+||.|+..|+.++++.|++..+.+++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-CCCCHHHHHH
Confidence            346778899999999999999999876778888888889999999999999999999999999998854 8999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||++++.. .+..+.++|..+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            999999999999999999999999999999986   5677777754433335566778899988776 888888888765


Q ss_pred             C
Q psy6441         241 Q  241 (464)
Q Consensus       241 ~  241 (464)
                      +
T Consensus       163 g  163 (165)
T 3twr_A          163 A  163 (165)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=2.1e-24  Score=202.58  Aligned_cols=163  Identities=21%  Similarity=0.184  Sum_probs=147.0

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~  114 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAA  114 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH
Confidence            57899999999999999999999999 999999999999999999999999999999999999999954 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ..|+.+++++|+++|++++.+|..|.||||+|+   +.+++++|...+......+..+.||+++|....+..+.++|+++
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            999999999999999999999999999999996   56777777544433345567888999999999999999999988


Q ss_pred             CCCCCCCC
Q psy6441         241 QNRTHQTN  248 (464)
Q Consensus       241 ~~~~~~~~  248 (464)
                      +.....+.
T Consensus       195 ga~~~~~~  202 (231)
T 3aji_A          195 GASIYIEN  202 (231)
T ss_dssp             TCCSCCCC
T ss_pred             CCCCCCCC
Confidence            77665544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=1.8e-24  Score=196.58  Aligned_cols=162  Identities=20%  Similarity=0.150  Sum_probs=136.7

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      .++.++||.|+..|+.+++++|++..+.+++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHH
Confidence            46788999999999999999999987788999999999999999999999999999999999999854 89999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      .|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|....+..+.+++...+
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999996   567777775444434556777889999999988989999988776


Q ss_pred             CCCCCC
Q psy6441         242 NRTHQT  247 (464)
Q Consensus       242 ~~~~~~  247 (464)
                      ......
T Consensus       162 ~~~~~~  167 (179)
T 3f6q_A          162 QNLNRI  167 (179)
T ss_dssp             CCCSCB
T ss_pred             cCcccC
Confidence            665443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=1.4e-25  Score=214.90  Aligned_cols=197  Identities=15%  Similarity=0.035  Sum_probs=154.3

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhc---CChhhhhcchh
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMEN---THLNSARLPFS  108 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~---G~~~iVk~LL~  108 (464)
                      ++++|+.|+....++.++.+.+..      .....++..        .....+..|.||||+|+..   |+.+++++|++
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l------~~~g~~i~~--------~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~   67 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYL------RWNSKYLTD--------SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ   67 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHH------HHHTCCTTS--------GGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHH------HHcCCCccc--------ccccCCCCCCCHHHHHHHccccchHHHHHHHHh
Confidence            468899999998887554333310      000000000        0012467999999999999   99999999999


Q ss_pred             hcCCCccc-----------ccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCC------------CCCcHHHHHHHc
Q psy6441         109 VLGVSDMD-----------RVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDM------------NGWTALHWAAKR  165 (464)
Q Consensus       109 ~~ga~~~~-----------~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~------------~G~TpLH~Aa~~  165 (464)
                      . |++++.           .|..|+||||+|+..|+.+++++|+++|++++.++..            .|+||||+|+..
T Consensus        68 ~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  146 (256)
T 2etb_A           68 I-DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT  146 (256)
T ss_dssp             H-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred             c-CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence            8 777653           3478999999999999999999999999999998652            299999999999


Q ss_pred             CCHHHHHHHHH---CCCCCCCCCCCCCchhHhhcc-----HH-------HHHHHhCC-CCCc------ccCCCCCCCccc
Q psy6441         166 GQKDIVSYLLK---HGADKSLLTSKEETPLALATK-----PE-------VRILLGGE-PGVT------INTADLPIVPNY  223 (464)
Q Consensus       166 G~~eiv~lLL~---~GAdin~~D~~G~TPLh~A~~-----~~-------i~~LL~~~-~~~~------~~~~~~~~tpl~  223 (464)
                      |+.+++++|++   +|++++.+|..|+||||+|+.     .+       ++++|... .+..      ...+..+.||++
T Consensus       147 ~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            99999999999   999999999999999999963     34       77777432 2221      456778899999


Q ss_pred             ccCCCCcHHHHHHHHhCCCC
Q psy6441         224 IKNEPLDPRVNDYQVSNQNR  243 (464)
Q Consensus       224 laa~~~h~a~~~~l~sn~~~  243 (464)
                      +|+..++..+.++|++++..
T Consensus       227 ~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          227 LAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhCCCC
Confidence            99999999999999876543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.92  E-value=2.2e-25  Score=213.58  Aligned_cols=201  Identities=16%  Similarity=0.065  Sum_probs=155.5

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhh---hcCChhhhhcchh
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGM---ENTHLNSARLPFS  108 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa---~~G~~~iVk~LL~  108 (464)
                      .+++++.|++.+.++.++.+....      ........    .    .....+..|.||||+|+   ..|+.+++++|++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l------~~~~~~~~----~----~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~   70 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFL------LTHKKRLT----D----EEFREPSTGKTCLPKALLNLSAGRNDTIPILLD   70 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHH------HHHTCCTT----S----GGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHH------HhcCCCcc----h----hhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence            467889999998887655444310      00000000    0    00122367999999998   7899999999999


Q ss_pred             hcCC-----------CcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC-------------CCCCcHHHHHHH
Q psy6441         109 VLGV-----------SDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD-------------MNGWTALHWAAK  164 (464)
Q Consensus       109 ~~ga-----------~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd-------------~~G~TpLH~Aa~  164 (464)
                      . |+           ..+..|..|+||||+|+..|+.++|++|+++|++++.++.             ..|+||||+|+.
T Consensus        71 ~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  149 (260)
T 3jxi_A           71 I-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC  149 (260)
T ss_dssp             H-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred             h-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence            7 53           3455566999999999999999999999999999999863             479999999999


Q ss_pred             cCCHHHHHHHHH---CCCCCCCCCCCCCchhHhhcc------------HHHHHHHhCC-CCCc------ccCCCCCCCcc
Q psy6441         165 RGQKDIVSYLLK---HGADKSLLTSKEETPLALATK------------PEVRILLGGE-PGVT------INTADLPIVPN  222 (464)
Q Consensus       165 ~G~~eiv~lLL~---~GAdin~~D~~G~TPLh~A~~------------~~i~~LL~~~-~~~~------~~~~~~~~tpl  222 (464)
                      .|+.+++++|++   +|++++.+|..|+||||+|+.            .+++++|... ....      ...+..+.||+
T Consensus       150 ~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred             cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence            999999999999   999999999999999999972            3677766322 2221      34677889999


Q ss_pred             cccCCCCcHHHHHHHHhCCCCCCCC
Q psy6441         223 YIKNEPLDPRVNDYQVSNQNRTHQT  247 (464)
Q Consensus       223 ~laa~~~h~a~~~~l~sn~~~~~~~  247 (464)
                      ++|+..++..++++|++++..+...
T Consensus       230 ~~A~~~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          230 MMAAKTGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHhCCCcccc
Confidence            9999999999999999876554443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=2.6e-24  Score=211.04  Aligned_cols=211  Identities=18%  Similarity=0.123  Sum_probs=174.4

Q ss_pred             hcccccCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcch
Q psy6441          23 ELNRLTELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSI   91 (464)
Q Consensus        23 ei~rl~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpL   91 (464)
                      ++.. .+..+.++|++|+.....+.++.+.....   ..+....+..+.+...+..++...+.+        +..|.|||
T Consensus        51 ~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           51 PLMG-DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL  129 (285)
T ss_dssp             TTCS-SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred             cccC-CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            3444 56778999999999999988887777542   233445677888888777776655543        36799999


Q ss_pred             hhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHH
Q psy6441          92 VNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIV  171 (464)
Q Consensus        92 h~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv  171 (464)
                      |+|+..|+.+++++|++. |++++..+ .|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHH
Confidence            999999999999999999 99987655 599999999999999999999999999999965 999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         172 SYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       172 ~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ++|+++|++++. |..|+||||+|+   +.+++++|...+......+..+.||++++..  +..+.+.|+..
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            999999999995 899999999996   5688888855444345567788999999995  34666777755

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=4.5e-25  Score=196.22  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=136.7

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      ...||||.|+..|+.+++++|++. |++++..+..|+||||+|+. |+.+++++|+++|++++.++. .|+||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence            466899999999999999999998 99999999999999999999 999999999999999999854 999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCC-cccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV-TINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~-~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+.. ....+..+.||+++|...++..+.++|++++
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999999999999999996   56788777443333 3556677889999999999999999998776


Q ss_pred             C
Q psy6441         242 N  242 (464)
Q Consensus       242 ~  242 (464)
                      +
T Consensus       161 A  161 (162)
T 1ihb_A          161 A  161 (162)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=4.3e-24  Score=199.70  Aligned_cols=170  Identities=15%  Similarity=0.007  Sum_probs=140.8

Q ss_pred             chhhhccchhHHHHhhhHHHHHHHhc-----------CCCCCcchhhhhhcCChhhhhcchhhcC--CCcccccchhhhH
Q psy6441          58 PNTIIRKDKDVARLTMFQEIELVLSQ-----------MPDGHGSIVNGMENTHLNSARLPFSVLG--VSDMDRVKYLEEQ  124 (464)
Q Consensus        58 ~~~~~~~~~~~a~l~~~~ei~~ll~~-----------~~~g~TpLh~Aa~~G~~~iVk~LL~~~g--a~~~~~d~~G~Tp  124 (464)
                      .+....+..+.+...+..++...+.+           +..|.||||+|+..|+.+++++|++. |  ++++..+..|+||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~  110 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTC  110 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCH
Confidence            44455677777777666555544432           25789999999999999999999998 7  8889999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchhHhhc---cHHH
Q psy6441         125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG-ADKSLLTSKEETPLALAT---KPEV  200 (464)
Q Consensus       125 Lh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~G-Adin~~D~~G~TPLh~A~---~~~i  200 (464)
                      ||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+   +.++
T Consensus       111 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~  189 (228)
T 2dzn_A          111 LHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  189 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999955 9999999999999999999999999 999999999999999996   5677


Q ss_pred             HHHHh-CCCCCcccCCCCCCCcccccCCCC
Q psy6441         201 RILLG-GEPGVTINTADLPIVPNYIKNEPL  229 (464)
Q Consensus       201 ~~LL~-~~~~~~~~~~~~~~tpl~laa~~~  229 (464)
                      +++|. ..+......+..+.||+++|....
T Consensus       190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          190 AVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             HHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            77775 333333456677889999997653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=6.9e-24  Score=203.18  Aligned_cols=207  Identities=18%  Similarity=0.115  Sum_probs=137.5

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCc----hhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLP----NTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTH   99 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~----~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~   99 (464)
                      +.++++.|++...++.++.+.....-.    .....+..+.+...+..++...+.+        +..|.||||+|+..|+
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            566777777777776666665543322    2223345666665555555444332        2467777777777777


Q ss_pred             hhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc---------CCCCCcHHHHHHHcCCHHH
Q psy6441         100 LNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH---------DMNGWTALHWAAKRGQKDI  170 (464)
Q Consensus       100 ~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d---------d~~G~TpLH~Aa~~G~~ei  170 (464)
                      .+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++..+         +..|+||||+|+..|+.++
T Consensus        85 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           85 VKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             HHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHc-CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            7777777777 77777777777777777777777777777777777777652         2367777777777777777


Q ss_pred             HHHHHHC-CCCCCCCCCCCCchhHhhc---c----HHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         171 VSYLLKH-GADKSLLTSKEETPLALAT---K----PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       171 v~lLL~~-GAdin~~D~~G~TPLh~A~---~----~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +++|+++ |++++.+|..|+||||+|+   +    .+++++|...+......+..+.||+++|...++..+.++|+.
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            7777776 7777777777777777774   2    456666543333233445566677777777777777777776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=9.9e-25  Score=196.84  Aligned_cols=154  Identities=23%  Similarity=0.186  Sum_probs=133.4

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..+.++|++|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHH
Confidence            4567899999999999999999998 999999999999999999999999999999999999998854 89999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      .|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.++|.+.
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999999996   56777777544333345567788999999999999998888753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.91  E-value=1.3e-24  Score=208.47  Aligned_cols=163  Identities=12%  Similarity=0.095  Sum_probs=146.5

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCC-CcccccCCCCCcHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWA  162 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Ga-dvn~~dd~~G~TpLH~A  162 (464)
                      +..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|+ +++.++. .|+||||+|
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A  131 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILA  131 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHH
Confidence            57899999999999999999999999 99999999999999999999999999999999987 8998854 999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|+..++..+.++|+.
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999996   5677777754433334556778899999999999999999998


Q ss_pred             CCCCCCCCC
Q psy6441         240 NQNRTHQTN  248 (464)
Q Consensus       240 n~~~~~~~~  248 (464)
                      .+.....+.
T Consensus       212 ~ga~~~~~d  220 (253)
T 1yyh_A          212 HFANRDITD  220 (253)
T ss_dssp             TTCCTTCCC
T ss_pred             cCCCccccc
Confidence            877665554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=7.5e-24  Score=199.54  Aligned_cols=188  Identities=22%  Similarity=0.230  Sum_probs=159.9

Q ss_pred             hhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHh
Q psy6441          59 NTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASC  130 (464)
Q Consensus        59 ~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~  130 (464)
                      +....+..+.+...+..++...+.+        +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+.
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCHHHHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHH
Confidence            3344566777776666555544432        36789999999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHHCC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         131 LGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       131 ~G~~eiVk~LL~~G-advn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      .|+.+++++|++.| ++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+   +.+++++|..
T Consensus        87 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           87 KGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999998 89998854 9999999999999999999999999999999999999999996   5678888855


Q ss_pred             CCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         207 EPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       207 ~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      .+......+..+.||+++|....+..+.++|++++.....+.
T Consensus       166 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  207 (237)
T 3b7b_A          166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN  207 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence            444445566778999999999999999999998877665554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=6.6e-24  Score=203.34  Aligned_cols=217  Identities=18%  Similarity=0.121  Sum_probs=182.4

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhc
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMEN   97 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~   97 (464)
                      +..+.+++++|+.....+.++.+.....   ..+....+..+.+...+..++...+.+        +..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            4456799999999999987877776543   233345577788877766666555433        36799999999999


Q ss_pred             CChhhhhcchhhcCCCcccc----------cchhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHHHHHHcC
Q psy6441          98 THLNSARLPFSVLGVSDMDR----------VKYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        98 G~~~iVk~LL~~~ga~~~~~----------d~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      |+.+++++|++. |++++..          +..|.||||+|+..|+.+++++|++. |++++.++. .|+||||+|+..|
T Consensus       116 ~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~  193 (285)
T 1wdy_A          116 GKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSS  193 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCS
T ss_pred             CCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHcc
Confidence            999999999999 9999887          77899999999999999999999998 999999954 9999999999999


Q ss_pred             C----HHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCC-cccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         167 Q----KDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGV-TINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       167 ~----~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~-~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      +    .+++++|+++|++++.+|..|+||||+|+   +.+++++|....+. ....+..+.||+++|....+..+.++|+
T Consensus       194 ~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  273 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence            9    99999999999999999999999999996   56788877553333 3556678899999999999999999999


Q ss_pred             hCCCCCCCC
Q psy6441         239 SNQNRTHQT  247 (464)
Q Consensus       239 sn~~~~~~~  247 (464)
                      .++..+...
T Consensus       274 ~~Ga~~~~~  282 (285)
T 1wdy_A          274 KRGASTDCG  282 (285)
T ss_dssp             HHSSCSCCS
T ss_pred             HcCCCCCcc
Confidence            888776554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=9.7e-25  Score=196.58  Aligned_cols=155  Identities=20%  Similarity=0.073  Sum_probs=115.8

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcC
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      +.||||.|+..|+.++++.|++.....++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-cCCCHHHHHHHCC
Confidence            457888888888888888888873333777778888888888888888888888888888887744 7888888888888


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCC
Q psy6441         167 QKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       167 ~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~  242 (464)
                      +.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.+++..++.
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            888888888888888888888888888885   4566666643333334455667788888888888888877776543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=6.1e-24  Score=210.01  Aligned_cols=217  Identities=18%  Similarity=0.063  Sum_probs=170.6

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcC----CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcC
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRK----LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENT   98 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~----l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G   98 (464)
                      .+.+.++.++..+.++.+..+.....    ..+....+..+.+...+..++...+.+        +..|.||||+|+..|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence            35678888999888876655544321    233344567788877776666555443        367899999999999


Q ss_pred             ChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc---------------------------
Q psy6441          99 HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH---------------------------  151 (464)
Q Consensus        99 ~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d---------------------------  151 (464)
                      +.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++..+                           
T Consensus       103 ~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~  181 (351)
T 3utm_A          103 HYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS  181 (351)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence            99999999998 99999999999999999999999999999999999877542                           


Q ss_pred             --------------------------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHH
Q psy6441         152 --------------------------DMNGWTALHWAAKR---GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPE  199 (464)
Q Consensus       152 --------------------------d~~G~TpLH~Aa~~---G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~  199 (464)
                                                +..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+|+   +.+
T Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  261 (351)
T 3utm_A          182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND  261 (351)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH
Confidence                                      23678999999998   4478999999999999999999999999996   567


Q ss_pred             HHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         200 VRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       200 i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      ++++|...+......+..+.||+++|...++..++++|+.++..+....
T Consensus       262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~  310 (351)
T 3utm_A          262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS  310 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence            8877754443334556778899999999999999999998877655554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=9.1e-24  Score=205.83  Aligned_cols=184  Identities=17%  Similarity=0.145  Sum_probs=122.5

Q ss_pred             CChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhh
Q psy6441          30 LTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSV  109 (464)
Q Consensus        30 l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~  109 (464)
                      ..+.++++.||..+.++.++.+.....-.+                      ..+..|.||||+|+..|+.+++++|++.
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~----------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   95 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADIN----------------------YANVDGLTALHQACIDDNVDMVKFLVEN   95 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT----------------------CBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCc----------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            456789999999998887776665432111                      1234555555555555555555555555


Q ss_pred             cCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc--------------------------------------
Q psy6441         110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH--------------------------------------  151 (464)
Q Consensus       110 ~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d--------------------------------------  151 (464)
                       |++++..|..|+||||+|+..|+.+++++|+++|++++..+                                      
T Consensus        96 -ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  174 (299)
T 1s70_B           96 -GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE  174 (299)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             -CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhh
Confidence             55555555555555555555555555555555555554432                                      


Q ss_pred             ---------------------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCC
Q psy6441         152 ---------------------DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGE  207 (464)
Q Consensus       152 ---------------------d~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~  207 (464)
                                           +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...
T Consensus       175 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  254 (299)
T 1s70_B          175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (299)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence                                 236788899999999999999999999999999999999999986   56777777444


Q ss_pred             CCCcccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         208 PGVTINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       208 ~~~~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      +......+..+.||+++|.....-.+.+.
T Consensus       255 gad~~~~d~~g~t~l~~A~~~~~~~l~~l  283 (299)
T 1s70_B          255 LCDMEAVNKVGQTAFDVADEDILGYLEEL  283 (299)
T ss_dssp             TCCTTCCCTTSCCTTTSCCSGGGHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence            33334456778899998877554444443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=8e-24  Score=199.18  Aligned_cols=186  Identities=16%  Similarity=0.041  Sum_probs=155.0

Q ss_pred             hhccchhHHHHhhhHHHHH-HHh-----------cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHH
Q psy6441          61 IIRKDKDVARLTMFQEIEL-VLS-----------QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREA  128 (464)
Q Consensus        61 ~~~~~~~~a~l~~~~ei~~-ll~-----------~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~A  128 (464)
                      ...+..+.+...+..++.. ++.           .+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A   86 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLA   86 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHH
Confidence            3445566666655544333 222           135799999999999999999999998 999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCC----CcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCchhHhhc---cHHH
Q psy6441         129 SCLGDFEAVCELVSKGI----DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLT-SKEETPLALAT---KPEV  200 (464)
Q Consensus       129 a~~G~~eiVk~LL~~Ga----dvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A~---~~~i  200 (464)
                      +..|+.+++++|++.|+    +++..+ ..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+   +.++
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCccccccccC-cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence            99999999999999987    888885 499999999999999999999999999999999 88999999996   5678


Q ss_pred             HHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         201 RILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       201 ~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      +++|...+......+..+.||+++|+..++..+.++|+.++.....+.
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  213 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN  213 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcC
Confidence            887754433334556778899999999999999999998877665554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=1.8e-24  Score=191.48  Aligned_cols=151  Identities=19%  Similarity=0.196  Sum_probs=130.8

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcC
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      +.|+||.|+..|+.++++.|++..+.+++..+..|+||||+ +..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC
Confidence            45789999999999999999988666888999999999999 999999999999999999999854 8999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         167 QKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       167 ~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      +.+++++|+++|++++.+|..|+||||+|+   +.+++++|... ......+..+.||+++|...++..+.++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999996   56788888655 33345567788999999999999998888753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=5.1e-24  Score=200.40  Aligned_cols=158  Identities=19%  Similarity=0.138  Sum_probs=139.3

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCc-----ccccCCCCCcHHH
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDI-----NAQHDMNGWTALH  160 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadv-----n~~dd~~G~TpLH  160 (464)
                      .|.||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.+++++|+++|+++     +.. +..|+||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCST-TTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccccccc-CCCCcCHHH
Confidence            58999999999999999999999879999999999999999999999999999999999987     555 348999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCC-------------CCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccc
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLTS-------------KEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYI  224 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D~-------------~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~l  224 (464)
                      +|+..|+.+++++|+++|++++.++.             .|+||||+|+   +.+++++|...+......+..+.||+++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  160 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999998876             7999999996   5678887754433335567788999999


Q ss_pred             cCCCCcHHHH----HHHHhCCCCC
Q psy6441         225 KNEPLDPRVN----DYQVSNQNRT  244 (464)
Q Consensus       225 aa~~~h~a~~----~~l~sn~~~~  244 (464)
                      |+...+..+.    ++|++.+...
T Consensus       161 A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHcCChHHHHHHHHHHHhcCCch
Confidence            9999999887    8888776654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=6e-24  Score=218.93  Aligned_cols=215  Identities=20%  Similarity=0.147  Sum_probs=140.9

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCch---hhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCCh
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPN---TIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHL  100 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~---~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~  100 (464)
                      +.++++.|+....++.++.+......++   ....+..+.+...+..++...+..        +..|.||||+|+..|+.
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  225 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV  225 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            4455666666555554444444322111   122344555555555454444432        13567777777777777


Q ss_pred             hhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy6441         101 NSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD  180 (464)
Q Consensus       101 ~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd  180 (464)
                      +++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++
T Consensus       226 ~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~  303 (437)
T 1n11_A          226 EVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM  303 (437)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCcc
Confidence            777777776 777777777777777777777777777777777777777743 777777777777777777777777777


Q ss_pred             CCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         181 KSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       181 in~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      ++.+|..|+||||+|+   +.+++++|...+...+..+..+.||+++|+..++.+++++|+.++..+....
T Consensus       304 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC
Confidence            7777777888888775   3466666643333234455667788888888888888888777766555444

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=4.5e-24  Score=196.10  Aligned_cols=155  Identities=17%  Similarity=0.123  Sum_probs=138.5

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHH-HCCCCcccccCCCCCcHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL-~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      +..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+ ..+++++..+. .|+||||+|
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A  113 (201)
T 3hra_A           36 DTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPA  113 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccC-CCCcHHHHH
Confidence            46899999999999999999999999 9999999999999999999999999999999 56889999854 999999999


Q ss_pred             HHcCCHHHHHHHHHCC-CCCCCCCCCCCchhHhhc---c-----HHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         163 AKRGQKDIVSYLLKHG-ADKSLLTSKEETPLALAT---K-----PEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       163 a~~G~~eiv~lLL~~G-Adin~~D~~G~TPLh~A~---~-----~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                      +..|+.+++++|+++| ++++.+|..|+||||+|+   .     .+++++|...+......+..+.||+++|...++.++
T Consensus       114 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  193 (201)
T 3hra_A          114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI  193 (201)
T ss_dssp             HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence            9999999999999998 999999999999999996   2     678887754443335566778899999999999999


Q ss_pred             HHHHHhC
Q psy6441         234 NDYQVSN  240 (464)
Q Consensus       234 ~~~l~sn  240 (464)
                      .++|++.
T Consensus       194 ~~~Ll~~  200 (201)
T 3hra_A          194 SKILAQY  200 (201)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhc
Confidence            9988754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.9e-24  Score=183.72  Aligned_cols=118  Identities=24%  Similarity=0.242  Sum_probs=112.5

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHH
Confidence            4688999999999999999999998 999999999999999999999999999999999999999965 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      .|+.+++++|+++|++++.+|..|+||||+|...++.++|
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            9999999999999999999999999999999999988887

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=2e-24  Score=191.37  Aligned_cols=147  Identities=22%  Similarity=0.192  Sum_probs=84.6

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      .++||.|+..|+.+++++|++. |++++ .+..|+||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCh
Confidence            3556666666666666666665 55544 355566666666666666666666666666665533 56666666666666


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         168 KDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       168 ~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      .+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+.++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666666666666666666666666664   34555555332222233344555666666666665555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=7.5e-24  Score=197.72  Aligned_cols=163  Identities=12%  Similarity=0.091  Sum_probs=145.3

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCC-CcccccCCCCCcHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI-DINAQHDMNGWTALHWA  162 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Ga-dvn~~dd~~G~TpLH~A  162 (464)
                      +..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|++.++ +++..+ ..|+||||+|
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A   99 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILA   99 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHHHH
Confidence            56899999999999999999999999 99999999999999999999999999999999987 888885 4999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|+..++..+.++|+.
T Consensus       100 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999996   5677777754433334556788899999999999999999998


Q ss_pred             CCCCCCCCC
Q psy6441         240 NQNRTHQTN  248 (464)
Q Consensus       240 n~~~~~~~~  248 (464)
                      .+.....+.
T Consensus       180 ~ga~~~~~~  188 (223)
T 2f8y_A          180 HFANRDITD  188 (223)
T ss_dssp             TTCCTTCCC
T ss_pred             cCCCCcccc
Confidence            876655443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=1e-23  Score=217.26  Aligned_cols=218  Identities=18%  Similarity=0.132  Sum_probs=178.1

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCC---chhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKL---PNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l---~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      .+-++.++|++|+..+.++.++.+.....-   .+....+..+.+...+..++...+.+        +..|.||||+|+.
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            345678999999999999888887775432   23334567788887777666655543        3678999999999


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .|+.++|++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|++
T Consensus        90 ~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~  167 (437)
T 1n11_A           90 IGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLE  167 (437)
T ss_dssp             HTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999 999999999999999999999999999999999999998854 89999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCC
Q psy6441         177 HGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQT  247 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~  247 (464)
                      +|++++..+..|.||||+|+   +.+++++|...+......+..+.||++.++..++..+.++|+..+.....+
T Consensus       168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  241 (437)
T 1n11_A          168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE  241 (437)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            99999999999999999996   568888885544444455667889999999999999999999876554443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=1.7e-24  Score=195.06  Aligned_cols=121  Identities=25%  Similarity=0.258  Sum_probs=114.6

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A  109 (172)
T 3v30_A           32 PDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYA  109 (172)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-TTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHH
Confidence            356899999999999999999999999 99999999999999999999999999999999999999995 4999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus       110 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (172)
T 3v30_A          110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE  155 (172)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999999999999999999996   567888874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=1.3e-23  Score=192.84  Aligned_cols=154  Identities=21%  Similarity=0.165  Sum_probs=135.7

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcch
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPF  107 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL  107 (464)
                      .+..+.++++.||.....+.++.+......                      +...+..|.||||+|+..|+.+++++|+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   88 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDK----------------------LEDKDIEGSTALIWAVKNNRLGIAEKLL   88 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------------cccccccCccHHHHHHHcCCHHHHHHHH
Confidence            456678899999998888766666543211                      1123568999999999999999999999


Q ss_pred             hhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy6441         108 SVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK  187 (464)
Q Consensus       108 ~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~  187 (464)
                      +. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        89 ~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  166 (192)
T 2rfm_A           89 SK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADISARDLT  166 (192)
T ss_dssp             HH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             HC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            99 999999999999999999999999999999999999999954 9999999999999999999999999999999999


Q ss_pred             CCchhHhhc---cHHHHHHHh
Q psy6441         188 EETPLALAT---KPEVRILLG  205 (464)
Q Consensus       188 G~TPLh~A~---~~~i~~LL~  205 (464)
                      |+||||+|+   +.+++++|.
T Consensus       167 g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          167 GLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHHHHH
Confidence            999999996   668888873

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=1.5e-23  Score=187.52  Aligned_cols=155  Identities=21%  Similarity=0.233  Sum_probs=131.5

Q ss_pred             CChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhh
Q psy6441          30 LTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSV  109 (464)
Q Consensus        30 l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~  109 (464)
                      ..+.++++.|++...++.++.+......                     .....+..|.||||+|+..|+.+++++|++.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~---------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   64 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSV---------------------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH   64 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTT---------------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCC---------------------CccccccCCCCHHHHHHHcChHHHHHHHHhc
Confidence            3466778888888777544443321110                     0012245789999999999999999999999


Q ss_pred             cCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy6441         110 LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE  189 (464)
Q Consensus       110 ~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~  189 (464)
                       |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus        65 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           65 -GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence             999999999999999999999999999999999999999955 999999999999999999999999999999999999


Q ss_pred             chhHhhc--cHHHHHHHhCC
Q psy6441         190 TPLALAT--KPEVRILLGGE  207 (464)
Q Consensus       190 TPLh~A~--~~~i~~LL~~~  207 (464)
                      ||||+|.  +.+++++|...
T Consensus       143 t~l~~a~~~~~~i~~~L~~~  162 (165)
T 3twr_A          143 TPLDLVKDGDTDIQDLLRGD  162 (165)
T ss_dssp             CTGGGSCTTCHHHHHHHHTC
T ss_pred             ChhHhHhcCChHHHHHHhhc
Confidence            9999996  56899998544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=7.5e-24  Score=184.28  Aligned_cols=120  Identities=22%  Similarity=0.186  Sum_probs=113.9

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY-QNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG-GGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC-CCCCHHHHH
Confidence            457899999999999999999999999 999999999999999999999999999999999999999955 999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.....+++
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            999999999999999999999999999999999977666666

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=5.7e-24  Score=216.60  Aligned_cols=212  Identities=14%  Similarity=0.102  Sum_probs=163.1

Q ss_pred             CChHhHHHHHHHhcCCCCHHHHHH--------hc---CCchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcc
Q psy6441          30 LTYYSLLNICCKELNIDSPQTILK--------IR---KLPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGS   90 (464)
Q Consensus        30 l~~~~lL~i~c~~~~i~~~~~l~~--------~~---~l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~Tp   90 (464)
                      ..+.++|++|+.....+.++.+..        ..   +..+....+.++.|...+..++..++.+        +..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            467889999999888876666542        11   2334455667778877777666655543        2578899


Q ss_pred             hhhhhhcCChhhhhcchhhcC---CCcccccchhhhHHHHHHhcC---CHHHHHHHHHCCCCcccc-------cCCCCCc
Q psy6441          91 IVNGMENTHLNSARLPFSVLG---VSDMDRVKYLEEQLREASCLG---DFEAVCELVSKGIDINAQ-------HDMNGWT  157 (464)
Q Consensus        91 Lh~Aa~~G~~~iVk~LL~~~g---a~~~~~d~~G~TpLh~Aa~~G---~~eiVk~LL~~Gadvn~~-------dd~~G~T  157 (464)
                      ||+|+..|+.+++++|++. +   ++++..|..|+||||+|+..|   +.+++++|+++|++++..       .+..|+|
T Consensus       203 L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            9999999999999999887 5   788888888999999999887   788999999999888762       1347889


Q ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         158 ALHWAAKRGQKDIVSYLLKHG-ADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       158 pLH~Aa~~G~~eiv~lLL~~G-Adin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                      |||+|+..|+.+++++|+++| ++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|...++..+
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999765 899999999999999986   5577777744433334456678899999999999999


Q ss_pred             HHHHHhCCC
Q psy6441         234 NDYQVSNQN  242 (464)
Q Consensus       234 ~~~l~sn~~  242 (464)
                      +++|..++.
T Consensus       362 v~~Ll~~~a  370 (373)
T 2fo1_E          362 VDIFDRCRP  370 (373)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHhcCc
Confidence            888886543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.6e-23  Score=185.53  Aligned_cols=148  Identities=22%  Similarity=0.244  Sum_probs=128.8

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG  111 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g  111 (464)
                      +.++++.|+....++.++.+.......                       ..+..|.||||+|+..|+.+++++|++. |
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g   57 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-----------------------TTDWLGTSPLHLAAQYGHFSTTEVLLRA-G   57 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-----------------------CCCTTCCCHHHHHHHHTCHHHHHHHHTT-T
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-----------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence            346777777777776555554422100                       1245799999999999999999999998 9


Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCch
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP  191 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TP  191 (464)
                      ++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        58 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99999999999999999999999999999999999999954 99999999999999999999999999999999999999


Q ss_pred             hHhhc---cHHHHHHH
Q psy6441         192 LALAT---KPEVRILL  204 (464)
Q Consensus       192 Lh~A~---~~~i~~LL  204 (464)
                      ||+|+   +.+++++|
T Consensus       137 l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            99996   56888887

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.90  E-value=1.8e-23  Score=203.77  Aligned_cols=109  Identities=26%  Similarity=0.323  Sum_probs=102.8

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      +|.|+||.||..|+.++|++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~  116 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASC  116 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHc
Confidence            567899999999999999999999 999999999999999999999999999999999999999955 999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      |+.+++++|+++|++++.+|..|.||||+|+
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  147 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAE  147 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999888887777764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=6.7e-24  Score=200.70  Aligned_cols=165  Identities=15%  Similarity=0.032  Sum_probs=139.4

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhc---CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVL---GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTAL  159 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~---ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpL  159 (464)
                      .+.+|.||||+|+..|+.+++++|++..   +++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHH
Confidence            3578999999999999999999999872   237899999999999999999999999999999999999955 999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCchhHhhc---cHHHHHHHhC-CCCCcccCCCCCCCcccccCCCC
Q psy6441         160 HWAAKRGQKDIVSYLLKHGAD------KSLLTSKEETPLALAT---KPEVRILLGG-EPGVTINTADLPIVPNYIKNEPL  229 (464)
Q Consensus       160 H~Aa~~G~~eiv~lLL~~GAd------in~~D~~G~TPLh~A~---~~~i~~LL~~-~~~~~~~~~~~~~tpl~laa~~~  229 (464)
                      |+|+..|+.+++++|+++|++      ++..|..|+||||+|+   +.+++++|.. +..........+.||+++|+..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999986      5778889999999996   5677777743 33343333337899999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCC
Q psy6441         230 DPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       230 h~a~~~~l~sn~~~~~~~~  248 (464)
                      +..++++|++++.......
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCC
T ss_pred             CHHHHHHHHHcCCCCCccc
Confidence            9999999998876655544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=204.32  Aligned_cols=169  Identities=15%  Similarity=0.074  Sum_probs=126.2

Q ss_pred             CCCCcchhhhhhcCChh-hhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLN-SARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~-iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      ..|.||||.|+..++.+ +++.|++. |++++..|..|+||||+|+..|+.++|++|++.|++++.++. .|+||+|+|+
T Consensus        50 ~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~  127 (269)
T 4b93_B           50 PEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLAC  127 (269)
T ss_dssp             -------------------------C-CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT-TCCCHHHHHH
T ss_pred             ccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC-CCCCcccccc
Confidence            56889999999988764 77888888 999999999999999999999999999999999999999955 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      ..++.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+...+..+..+.||+++|+..++..++++|+++
T Consensus       128 ~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999999999999999999999997   45677777443333345677889999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCc
Q psy6441         241 QNRTHQTNPVTANQNV  256 (464)
Q Consensus       241 ~~~~~~~~p~~~~~p~  256 (464)
                      +.....+. ..+.+|.
T Consensus       208 Gad~~~~d-~~G~TpL  222 (269)
T 4b93_B          208 GASVQVLN-KRQRTAV  222 (269)
T ss_dssp             TCCSCCCC-TTSCCSG
T ss_pred             CCCCCCcC-CCCCCHH
Confidence            87766655 3444443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.90  E-value=2.2e-23  Score=207.66  Aligned_cols=210  Identities=16%  Similarity=0.080  Sum_probs=140.7

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcCCc------------------------------------hhhhccchhHHHHhhh
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRKLP------------------------------------NTIIRKDKDVARLTMF   74 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~l~------------------------------------~~~~~~~~~~a~l~~~   74 (464)
                      .+.++|++|+.....+.++.++.....+                                    +....+..+.+...+.
T Consensus        58 ~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~  137 (337)
T 4g8k_A           58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  137 (337)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence            4678999999998888777776643221                                    1122234445554444


Q ss_pred             HHHHHHHhc------------------CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC---
Q psy6441          75 QEIELVLSQ------------------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD---  133 (464)
Q Consensus        75 ~ei~~ll~~------------------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~---  133 (464)
                      .++...+..                  +..|.||||+|+..|+.++|++||++.|++++..|..|.|+||+++..++   
T Consensus       138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~  217 (337)
T 4g8k_A          138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  217 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT
T ss_pred             HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc
Confidence            444333321                  13467788888888888888888766577888777778888777665443   


Q ss_pred             -HHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchhHhhc---cHHHHHHHhCCC
Q psy6441         134 -FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALAT---KPEVRILLGGEP  208 (464)
Q Consensus       134 -~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~-GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~  208 (464)
                       ..++++|+++|+++|.++. .|+||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+   +.+++++|...+
T Consensus       218 ~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          218 VEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence             3467777788888887754 788888888888888888887774 7788888888888888885   456777664332


Q ss_pred             CCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCC
Q psy6441         209 GVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQ  246 (464)
Q Consensus       209 ~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~  246 (464)
                       ++.    ...+|++.|+..++.+++++|+++++.+..
T Consensus       297 -Ad~----n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          297 -AST----DCGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             -CSS----TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             -CCC----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence             221    123577888777888888888877765543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=4.6e-23  Score=203.71  Aligned_cols=208  Identities=17%  Similarity=0.076  Sum_probs=169.6

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      .+..+.++|++|+....++.++.+.....   ..+....+..+.+...+..++...+.+        +..|.||||+|+.
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45567899999999999988888777543   233445577888888777777665544        3578999999999


Q ss_pred             cCChhhhhcchhhcCCCccccc------------------------------------------------------chhh
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRV------------------------------------------------------KYLE  122 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d------------------------------------------------------~~G~  122 (464)
                      .|+.+++++|++. |++++..+                                                      ..|+
T Consensus       134 ~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  212 (351)
T 3utm_A          134 KNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE  212 (351)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred             cCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence            9999999999999 88877544                                                      4567


Q ss_pred             hHHHHHHhc---CCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---
Q psy6441         123 EQLREASCL---GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---  196 (464)
Q Consensus       123 TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---  196 (464)
                      ||||+|+..   +..+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   
T Consensus       213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            999999999   558999999999999999955 9999999999999999999999999999999999999999996   


Q ss_pred             cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         197 KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       197 ~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      +.+++++|...+......+..+.||++++    +.++.+.+..+.
T Consensus       292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~  332 (351)
T 3utm_A          292 HLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSEST  332 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcc
Confidence            56888888544444455667788999988    456667666553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=8.2e-24  Score=207.71  Aligned_cols=159  Identities=15%  Similarity=0.065  Sum_probs=121.4

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCC-CcHHHHHHH
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNG-WTALHWAAK  164 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G-~TpLH~Aa~  164 (464)
                      +|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .| .||||+|+.
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~  138 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVM  138 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHH
Confidence            578888888888888888888888 888888888888888888888888888888888888888854 77 688888888


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCc-ccccCCCCcHHHHHHHHhC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVP-NYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tp-l~laa~~~h~a~~~~l~sn  240 (464)
                      .|+.+++++|+++|+++... ..|+||||+|+   +.+++++|...+......+..+.|| +++|....+..+.++|+++
T Consensus       139 ~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             TTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             cCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            88888888888888776322 27888888885   4577777743322223345566676 8888888888888888876


Q ss_pred             CCCCCCC
Q psy6441         241 QNRTHQT  247 (464)
Q Consensus       241 ~~~~~~~  247 (464)
                      +......
T Consensus       218 gad~~~~  224 (285)
T 3kea_A          218 DINIYSA  224 (285)
T ss_dssp             CBCSTTT
T ss_pred             CCCCCCC
Confidence            6554443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=205.06  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=142.0

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCC-CcccccchhhhHHHHHH-----hcCCHHHHHHHHHCCCCcccccCCCC
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGV-SDMDRVKYLEEQLREAS-----CLGDFEAVCELVSKGIDINAQHDMNG  155 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga-~~~~~d~~G~TpLh~Aa-----~~G~~eiVk~LL~~Gadvn~~dd~~G  155 (464)
                      ..+..|.||||+|+..|+.++|++|++. |+ +++..+..|+||||+|+     ..++.+++++|++.|++++..+ ..|
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-~~g  183 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS-QAG  183 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT-TTC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC-CCC
Confidence            4468999999999999999999999999 76 99999999999999999     6689999999999999998885 489


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCc-ccCCCCCCCcccccCCCCcH
Q psy6441         156 WTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVT-INTADLPIVPNYIKNEPLDP  231 (464)
Q Consensus       156 ~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~-~~~~~~~~tpl~laa~~~h~  231 (464)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|....+++ ...+..+.||+++|...++.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999996   568888886633333 55677889999999999999


Q ss_pred             HHHHHHHhCC
Q psy6441         232 RVNDYQVSNQ  241 (464)
Q Consensus       232 a~~~~l~sn~  241 (464)
                      ++.++|++..
T Consensus       264 ~iv~~Ll~~~  273 (276)
T 4hbd_A          264 EIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999988654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=4.6e-23  Score=185.87  Aligned_cols=154  Identities=23%  Similarity=0.204  Sum_probs=132.9

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      .....++++.|++...++.++.+.....-.                      ...+..|.||||+|+..|+.+++++|++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   68 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV----------------------NAEDASGWTPLHLAAFNGHLEIVEVLLK   68 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC----------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            344567888888888887666555432111                      1235689999999999999999999999


Q ss_pred             hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE  188 (464)
Q Consensus       109 ~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G  188 (464)
                      . |++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        69 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  146 (169)
T 2y1l_E           69 N-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG  146 (169)
T ss_dssp             T-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             c-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            9 999999999999999999999999999999999999999954 99999999999999999999999999999999999


Q ss_pred             CchhHhhc---cHHHHHHHhC
Q psy6441         189 ETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       189 ~TPLh~A~---~~~i~~LL~~  206 (464)
                      .||||+|+   +.+++++|..
T Consensus       147 ~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          147 KTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHhCCHHHHHHHHH
Confidence            99999996   5688888843

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=7.1e-24  Score=184.70  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=113.4

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCC-CCcHHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMN-GWTALHW  161 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~-G~TpLH~  161 (464)
                      .+..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+. |+.+++++|+++|++++.++. . |+||||+
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~   84 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-ATLTRPVHD   84 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-TTTBCHHHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCCHHHH
Confidence            457899999999999999999999999 99999999999999999999 999999999999999999966 7 9999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999996   567888773

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=2.3e-23  Score=186.62  Aligned_cols=149  Identities=19%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG  111 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g  111 (464)
                      +.++++.|+....++.++.+......                      +...+..|.||||+|+..|+.+++++|++. |
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g   59 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENV----------------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQN-G   59 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSC----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCC----------------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-C
Confidence            34567777777776655544432211                      122356899999999999999999999999 9


Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCch
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP  191 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TP  191 (464)
                      ++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999999999999999999999954 99999999999999999999999999999999999999


Q ss_pred             hHhhc---cHHHHHHH
Q psy6441         192 LALAT---KPEVRILL  204 (464)
Q Consensus       192 Lh~A~---~~~i~~LL  204 (464)
                      ||+|+   +.+++++|
T Consensus       139 l~~A~~~~~~~~~~~L  154 (167)
T 3v31_A          139 MDLAVALGYRSVQQVI  154 (167)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHH
Confidence            99996   56788777

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=6.5e-24  Score=189.24  Aligned_cols=138  Identities=18%  Similarity=0.192  Sum_probs=113.6

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCc-HHHH
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWT-ALHW  161 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~T-pLH~  161 (464)
                      .+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+ .|+.+++++|+++|++++.++. .|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-ATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-TTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHH
Confidence            356899999999999999999999999 9999999999999999985 9999999999999999999955 9999 9999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCccc
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNY  223 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~  223 (464)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+......+..+.||..
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            99999999999999999999999999999999996   568888885444333444444555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=6.2e-24  Score=208.57  Aligned_cols=162  Identities=17%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ..+..|.||||+|+..|+.+++++|++. |++++..+  |+||||+|+..|+.+++++|+++|++++.++. .|+||||+
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~  101 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD-KGNTALYY  101 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT-TSCCHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCcHHHH
Confidence            4457899999999999999999999999 99998884  89999999999999999999999999999955 99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCC-CchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKE-ETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G-~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      |+..|+.+++++|+++|++++.+|..| .||||+|+   +.+++++|...+.. ......+.||+++|+..++..+.++|
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT-TCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc-cccccCCccHHHHHHHcChHHHHHHH
Confidence            999999999999999999999999999 79999996   56888888544332 22223778999999999999999999


Q ss_pred             HhCCCCCCCCC
Q psy6441         238 VSNQNRTHQTN  248 (464)
Q Consensus       238 ~sn~~~~~~~~  248 (464)
                      ++++.....+.
T Consensus       181 l~~gad~n~~~  191 (285)
T 3kea_A          181 LDYMTSTNTNN  191 (285)
T ss_dssp             HHHHHHTCTTC
T ss_pred             HHcCCCCCccc
Confidence            98766554444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=3.4e-23  Score=184.03  Aligned_cols=149  Identities=21%  Similarity=0.201  Sum_probs=128.7

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG  111 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g  111 (464)
                      +.++++.|+....++.++.+.....-                      +...+..|.||||+|+. |+.+++++|++. |
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g   60 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN----------------------VNAQNGFGRTALQVMKL-GNPEIARRLLLR-G   60 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC----------------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-T
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC----------------------ccccCccCccHHHHHHc-CcHHHHHHHHHc-C
Confidence            56788888888877655554432110                      11235689999999999 999999999999 9


Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD-KSLLTSKEET  190 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAd-in~~D~~G~T  190 (464)
                      ++++.++..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus        61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            99999999999999999999999999999999999999955 999999999999999999999999998 6999999999


Q ss_pred             hhHhhc---cHHHHHHHh
Q psy6441         191 PLALAT---KPEVRILLG  205 (464)
Q Consensus       191 PLh~A~---~~~i~~LL~  205 (464)
                      |||+|+   +.+++++|.
T Consensus       140 ~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A          140 ACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999996   568888874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=4.9e-23  Score=192.62  Aligned_cols=210  Identities=14%  Similarity=0.018  Sum_probs=159.2

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcCC---chhhhccchhHHHHhhhHHHHHHHhcC---------CCCCcchhhhhhcC
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRKL---PNTIIRKDKDVARLTMFQEIELVLSQM---------PDGHGSIVNGMENT   98 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~l---~~~~~~~~~~~a~l~~~~ei~~ll~~~---------~~g~TpLh~Aa~~G   98 (464)
                      .+..+++.|++...++.++.+.....-   .+....+..+.+...+..++...+.+.         ..|.||||+|+..|
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence            345678889998888877777664422   222334566777666655555444332         23788999999999


Q ss_pred             ChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHHC
Q psy6441          99 HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ-KDIVSYLLKH  177 (464)
Q Consensus        99 ~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~-~eiv~lLL~~  177 (464)
                      +.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..++ .+++++|++.
T Consensus        88 ~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A           88 HLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             CHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC-CCCcHHHHHHHhCChHHHHHHHHhc
Confidence            99999999888 888888888899999999999999999999999999888854 88899999987666 7888899999


Q ss_pred             CCCCCCCCC-CCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCC
Q psy6441         178 GADKSLLTS-KEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       178 GAdin~~D~-~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~  242 (464)
                      |++++..+. .|.||||+|+   +.+++++|...+......+..+.||+++|....+..+.+++..++.
T Consensus       166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            999988886 8889999986   4567777643333334456677889999988888888888876544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=1.5e-22  Score=201.68  Aligned_cols=214  Identities=20%  Similarity=0.132  Sum_probs=172.4

Q ss_pred             CChHhHHHHHHHhcCCCCHHHHHHhcCCch----hhhccchhHHHHhhhHHHHHHHhc----------------------
Q psy6441          30 LTYYSLLNICCKELNIDSPQTILKIRKLPN----TIIRKDKDVARLTMFQEIELVLSQ----------------------   83 (464)
Q Consensus        30 l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~----~~~~~~~~~a~l~~~~ei~~ll~~----------------------   83 (464)
                      ..+.++|+.|++...++.++.++....-++    ....++++.|...+..++..+|.+                      
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            346789999999999998888887654332    224567888888877777665532                      


Q ss_pred             -------------------CCCCCcchhhhhhcCChhhhhcchhhcCCCcccc----------cchhhhHHHHHHhcCCH
Q psy6441          84 -------------------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDR----------VKYLEEQLREASCLGDF  134 (464)
Q Consensus        84 -------------------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~----------d~~G~TpLh~Aa~~G~~  134 (464)
                                         +..|.||||+|+..|+.+++++|++. |++++..          +..|.||||+|+..|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                               35788999999999999999999998 8887654          34689999999999999


Q ss_pred             HHHHHHHH-CCCCcccccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         135 EAVCELVS-KGIDINAQHDMNGWTALHWAAKRGQ----KDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       135 eiVk~LL~-~Gadvn~~dd~~G~TpLH~Aa~~G~----~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      ++|++||+ .|++++.++. .|+|+||+++..++    ..++++|+++|++++.+|..|+||||+|+   +.+++++|..
T Consensus       182 ~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            99999996 5999999955 99999999887654    46889999999999999999999999996   4566666654


Q ss_pred             CCCCc-ccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCC
Q psy6441         207 EPGVT-INTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTH  245 (464)
Q Consensus       207 ~~~~~-~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~  245 (464)
                      ..+.+ ...+..|.||+++|+..++..++++|+.+++...
T Consensus       261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            43333 5567788999999999999999999998776543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=1.9e-23  Score=181.99  Aligned_cols=119  Identities=26%  Similarity=0.333  Sum_probs=112.9

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..+.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHH
Confidence            4678999999999999999999999 999999999999999999999999999999999999999965 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      .|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  133 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ  133 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999996   568888874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.89  E-value=7.7e-23  Score=187.81  Aligned_cols=163  Identities=14%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..+.||||.|+..|+.+.++.|+...+.+++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHH
Confidence            46889999999999999999999996669999999999999999999999999999999999999955 99999999999


Q ss_pred             cCCHHHHHHHH-HCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCC-CCcccCCCCCCCcccccCCCCc-----HHHH
Q psy6441         165 RGQKDIVSYLL-KHGADKSLLTSKEETPLALAT---KPEVRILLGGEP-GVTINTADLPIVPNYIKNEPLD-----PRVN  234 (464)
Q Consensus       165 ~G~~eiv~lLL-~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~-~~~~~~~~~~~tpl~laa~~~h-----~a~~  234 (464)
                      .|+.+++++|+ ..+++++..|..|.||||+|+   +.+++++|...+ ......+..+.||++.+.....     ..+.
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            99999999999 568899999999999999996   567777775444 3335566778999999987766     8899


Q ss_pred             HHHHhCCCCCCCCC
Q psy6441         235 DYQVSNQNRTHQTN  248 (464)
Q Consensus       235 ~~l~sn~~~~~~~~  248 (464)
                      ++|+..+.....+.
T Consensus       162 ~~Ll~~ga~~~~~~  175 (201)
T 3hra_A          162 KLLMENGADQSIKD  175 (201)
T ss_dssp             HHHHHTTCCTTCCC
T ss_pred             HHHHHCCCCCCccC
Confidence            99998876655544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=5.8e-24  Score=216.54  Aligned_cols=161  Identities=18%  Similarity=0.132  Sum_probs=105.2

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCC---CCcccccCCCCCcHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKG---IDINAQHDMNGWTALHW  161 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~G---advn~~dd~~G~TpLH~  161 (464)
                      ..|.||||+|+..|+.++|++|++. |++++..+..|+||||+|+..|+.+++++|+++|   ++++..+. .|+||||+
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~  241 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMI  241 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHH
Confidence            5667777777777777777777776 7777777777777777777777777777777665   66666643 67777777


Q ss_pred             HHHcC---CHHHHHHHHHCCCCCCC--------CCCCCCchhHhhc---cHHHHHHHhCCC-CCcccCCCCCCCcccccC
Q psy6441         162 AAKRG---QKDIVSYLLKHGADKSL--------LTSKEETPLALAT---KPEVRILLGGEP-GVTINTADLPIVPNYIKN  226 (464)
Q Consensus       162 Aa~~G---~~eiv~lLL~~GAdin~--------~D~~G~TPLh~A~---~~~i~~LL~~~~-~~~~~~~~~~~tpl~laa  226 (464)
                      |+..|   +.+++++|+++|++++.        .|..|+||||+|+   +.+++++|.... ......+..+.||+++|+
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            77666   66777777777777664        4556777777774   455666654322 222344556667777777


Q ss_pred             CCCcHHHHHHHHhCCCCCCCC
Q psy6441         227 EPLDPRVNDYQVSNQNRTHQT  247 (464)
Q Consensus       227 ~~~h~a~~~~l~sn~~~~~~~  247 (464)
                      ..++..++++|+.++.....+
T Consensus       322 ~~g~~~iv~~Ll~~gad~~~~  342 (373)
T 2fo1_E          322 QEGRIEVVMYLIQQGASVEAV  342 (373)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCC
T ss_pred             HcCCHHHHHHHHHcCCCccCC
Confidence            777777777777665544443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=1.8e-22  Score=183.33  Aligned_cols=120  Identities=21%  Similarity=0.193  Sum_probs=113.3

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~  113 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYAC  113 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHH
Confidence            46899999999999999999999999 999999999999999999999999999999999999999964 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      ..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus       114 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A          114 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999997   446777773

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1.6e-22  Score=178.92  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=127.9

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG  111 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g  111 (464)
                      +.++++.|+....++.++.+.......                     +...+..|.||||+ +..|+.+++++|++. |
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g   58 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH---------------------PDALNRFGKTALQV-MMFGSTAIALELLKQ-G   58 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC---------------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-T
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC---------------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHC-C
Confidence            456777787777776555554431000                     01234679999999 999999999999999 9


Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCch
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETP  191 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TP  191 (464)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++ ++++.+|..|+||
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~  136 (156)
T 1bd8_A           59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP  136 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence            99999999999999999999999999999999999999965 999999999999999999999999 9999999999999


Q ss_pred             hHhhc---cHHHHHHHh
Q psy6441         192 LALAT---KPEVRILLG  205 (464)
Q Consensus       192 Lh~A~---~~~i~~LL~  205 (464)
                      ||+|+   +.+++++|.
T Consensus       137 l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A          137 LELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHH
Confidence            99996   678888874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=4.6e-23  Score=196.83  Aligned_cols=157  Identities=21%  Similarity=0.175  Sum_probs=103.5

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      .|.||||.|++.|+.++++.|+++ |++++.. ..|.||||+|+..|+.+++++|++.|++++.++. .|+||||+||..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHc
Confidence            689999999999999999999999 9998865 6789999999999999999999999999999955 899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh-CCCCCcccCCCCCCCccccc--CCCCcHHHHHHHHh
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG-GEPGVTINTADLPIVPNYIK--NEPLDPRVNDYQVS  239 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~-~~~~~~~~~~~~~~tpl~la--a~~~h~a~~~~l~s  239 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+   +.+++++|. .+.+........+.||++++  ...++..+.++|+.
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            9999999999999999999999999999996   567777774 44444444444445999998  77788889998887


Q ss_pred             CCCCCC
Q psy6441         240 NQNRTH  245 (464)
Q Consensus       240 n~~~~~  245 (464)
                      .+....
T Consensus       161 ~~a~~~  166 (239)
T 1ycs_B          161 VQEKMG  166 (239)
T ss_dssp             HHHHTT
T ss_pred             hhhccc
Confidence            654433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=1.5e-22  Score=171.17  Aligned_cols=118  Identities=34%  Similarity=0.427  Sum_probs=112.0

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      +|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHc
Confidence            589999999999999999999999 999999999999999999999999999999999999999955 999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  121 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL  121 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9999999999999999999999999999996   567777773

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.3e-22  Score=188.25  Aligned_cols=149  Identities=13%  Similarity=0.036  Sum_probs=125.6

Q ss_pred             CCcchhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCCH----HHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGDF----EAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~~----eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      +.++|+.|++.|+.+.++.++.. +  ++..+ ..|+||||+|+..|+.    +++++|+++|+++|.++ ..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-KEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Confidence            56889999999999999998877 4  45555 7899999999999975    58999999999999996 499999999


Q ss_pred             HHHcCC------HHHHHHHHHCCCCCCCCCCCCC-chhHhhcc--------HHHHHHHhC-CCCCcccCCCCCCCccccc
Q psy6441         162 AAKRGQ------KDIVSYLLKHGADKSLLTSKEE-TPLALATK--------PEVRILLGG-EPGVTINTADLPIVPNYIK  225 (464)
Q Consensus       162 Aa~~G~------~eiv~lLL~~GAdin~~D~~G~-TPLh~A~~--------~~i~~LL~~-~~~~~~~~~~~~~tpl~la  225 (464)
                      |+..|+      .+++++|+++|||+|.+|..|+ ||||+|+.        .+++++|.. .+......+..|.||+++|
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            999987      6789999999999999999999 99999975        357777765 3333356677888999999


Q ss_pred             CCCCcHHHHHHHHh
Q psy6441         226 NEPLDPRVNDYQVS  239 (464)
Q Consensus       226 a~~~h~a~~~~l~s  239 (464)
                      ....+..++++|..
T Consensus       162 ~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          162 KRCQKPIALKMMED  175 (186)
T ss_dssp             HTTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999988887663

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=2.6e-23  Score=199.01  Aligned_cols=157  Identities=19%  Similarity=0.099  Sum_probs=133.6

Q ss_pred             CCcchhhhhhcCChhhhhcchh----hcCCCccc----ccchhhhHHHHHHhc---CCHHHHHHHHHCCCCccccc----
Q psy6441          87 GHGSIVNGMENTHLNSARLPFS----VLGVSDMD----RVKYLEEQLREASCL---GDFEAVCELVSKGIDINAQH----  151 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~----~~ga~~~~----~d~~G~TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~d----  151 (464)
                      |+||||+|+..|+.++|+.|++    . |++++.    .|..|+||||+|+..   |+.+++++|++.|++++..+    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            7899999999999987765554    6 999998    899999999999999   99999999999998876432    


Q ss_pred             ------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCchhHhhc---cHHHHHHHhC---
Q psy6441         152 ------DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK-------------EETPLALAT---KPEVRILLGG---  206 (464)
Q Consensus       152 ------d~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~-------------G~TPLh~A~---~~~i~~LL~~---  206 (464)
                            +..|+||||+|+..|+.+++++|+++|++++.+|..             |+||||+|+   +.+++++|..   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                  247999999999999999999999999999999987             999999996   5688888865   


Q ss_pred             CCCCcccCCCCCCCcccccCC--CCcHH-------HHHHHHhCCCCC
Q psy6441         207 EPGVTINTADLPIVPNYIKNE--PLDPR-------VNDYQVSNQNRT  244 (464)
Q Consensus       207 ~~~~~~~~~~~~~tpl~laa~--~~h~a-------~~~~l~sn~~~~  244 (464)
                      .+......+..+.||+++|+.  ..+.+       +.++|+..+...
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            333335567789999999987  77877       888888765444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=6.2e-23  Score=197.20  Aligned_cols=139  Identities=19%  Similarity=0.108  Sum_probs=127.7

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      .|.||||+|+..|+.++++.|++  |++++.+|..|+||||+|+..|+.++|++|+++|++++.+++..|+||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            68899999999999999999999  8999999999999999999999999999999999999999756899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+.     ++         ....+.+|+++++..++..+.+++...
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~-----~~---------~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELARE-----IL---------KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-----HH---------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HH---------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            99999999999999999999999999999974     22         124456999999999999999988854

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=6.2e-23  Score=187.86  Aligned_cols=138  Identities=18%  Similarity=0.077  Sum_probs=121.9

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..|.||||+|+..|+.++++.|++  |++++..|..|+||||+|+..|+.+++++|+++|++++.+++..|+||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            367899999999999999999998  889999999999999999999999999999999999999975699999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         165 RGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      .|+.+++++|+++|++++.+|..|+||||+|+...              ......+++.+++..++..+.+.|.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~--------------~~~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREIL--------------KTTPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH--------------HTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc--------------cCcccccHHHHHHHcCHHHHHHHHH
Confidence            99999999999999999999999999999997421              1123347777777777777766665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=7.1e-24  Score=202.47  Aligned_cols=185  Identities=16%  Similarity=0.035  Sum_probs=123.8

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      ..++.++++.|+....++.++.+.....-.                      ...+..|.||||+|+..|+.+++++|++
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDP----------------------SQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCT----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCC----------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            445667777777776665555444322111                      1124567777777777777777777777


Q ss_pred             hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHCCCCCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA--AKRGQKDIVSYLLKHGADKSLLTS  186 (464)
Q Consensus       109 ~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A--a~~G~~eiv~lLL~~GAdin~~D~  186 (464)
                      . |++++..|..|+||||+|+..|+.+++++|+++|++++.+++..|+||||+|  +..|+.+++++|+++|++++.+|.
T Consensus        76 ~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           76 A-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             T-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            7 7777777777777777777777777777777777777776545777777777  777777777777777777777777


Q ss_pred             CCCchhHhhccHHHHHHHhCCC-CC-cccCCCCCCCcccccCCCCcHHHHHH
Q psy6441         187 KEETPLALATKPEVRILLGGEP-GV-TINTADLPIVPNYIKNEPLDPRVNDY  236 (464)
Q Consensus       187 ~G~TPLh~A~~~~i~~LL~~~~-~~-~~~~~~~~~tpl~laa~~~h~a~~~~  236 (464)
                      .|.||++.++.....++|...+ .. ....+..|.||+++|+..++.++++.
T Consensus       155 ~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          155 GAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             GEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             CchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            7777777555433334442222 22 14456678899999988888776553

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=7.6e-23  Score=195.32  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=121.6

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      .++.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+.
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpLh~A~~   96 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS-HGWTPLHCAAS   96 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHH
Confidence            4677899999999999999999998 999999999999999999999999999999999999999965 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCC-CCCCchhHhh--c---cHHHHHHHhCCCCCcccCCCCCCCcccccCC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLT-SKEETPLALA--T---KPEVRILLGGEPGVTINTADLPIVPNYIKNE  227 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A--~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~  227 (464)
                      .|+.+++++|+++|++++.++ ..|+||||+|  +   +.+++++|...+......+..+.++++..+.
T Consensus        97 ~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~  165 (229)
T 2vge_A           97 CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA  165 (229)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCC
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhh
Confidence            999999999999999999997 6999999999  4   5678888743222222234455677775444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=183.15  Aligned_cols=184  Identities=18%  Similarity=0.123  Sum_probs=149.3

Q ss_pred             ccchhHHHHhhhHHHHH-HHhc-------CCCCCcchhhhhhcCChhhhhcchhhcCCCccccc-chhhhHHHHHHhcCC
Q psy6441          63 RKDKDVARLTMFQEIEL-VLSQ-------MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV-KYLEEQLREASCLGD  133 (464)
Q Consensus        63 ~~~~~~a~l~~~~ei~~-ll~~-------~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d-~~G~TpLh~Aa~~G~  133 (464)
                      ....+.+...+..++.. ++..       +..|.||||+|+..|+.+++++|++. |.+++..+ ..|+||||+|+..|+
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCC
Confidence            34445555544444333 3332       36789999999999999999999999 88877655 559999999999999


Q ss_pred             HHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc----HHHHHHH-hCCC
Q psy6441         134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK----PEVRILL-GGEP  208 (464)
Q Consensus       134 ~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~----~~i~~LL-~~~~  208 (464)
                      .+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.    .+++++| ..+.
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~  167 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV  167 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCC
Confidence            9999999999999999854 99999999999999999999999999999999999999999972    3566666 4444


Q ss_pred             CCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCC
Q psy6441         209 GVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTN  248 (464)
Q Consensus       209 ~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~  248 (464)
                      .........+.||+++|...++..+.++|++.+.....+.
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  207 (240)
T 3eu9_A          168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN  207 (240)
T ss_dssp             CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred             CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            4444444478899999999999999999998766554443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=1.2e-22  Score=203.44  Aligned_cols=182  Identities=11%  Similarity=-0.001  Sum_probs=138.7

Q ss_pred             hHHHHhhhHHHHHHHh---------cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC---H
Q psy6441          67 DVARLTMFQEIELVLS---------QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD---F  134 (464)
Q Consensus        67 ~~a~l~~~~ei~~ll~---------~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~---~  134 (464)
                      +.+......++..++.         .+..|+||||+|+..|+.++|++|++. |++++.+|..|+||||+|+..|+   .
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            3444445555554433         457899999999999999999999999 99999999999999999999998   7


Q ss_pred             HHHHHHHHCC-CCcccccCCCCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCCC
Q psy6441         135 EAVCELVSKG-IDINAQHDMNGWTALHWAAK----RGQKDIVSYLLKH--------------------GADKSLLTSKEE  189 (464)
Q Consensus       135 eiVk~LL~~G-advn~~dd~~G~TpLH~Aa~----~G~~eiv~lLL~~--------------------GAdin~~D~~G~  189 (464)
                      ++++.|++.+ ++++.++. .|+||||+|+.    .|+.+++++|++.                    |++++.+|..|+
T Consensus       181 ~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~  259 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  259 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence            8888898886 78999955 99999999999    9999999999987                    899999999999


Q ss_pred             chhHhhccHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCc
Q psy6441         190 TPLALATKPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNV  256 (464)
Q Consensus       190 TPLh~A~~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~  256 (464)
                      ||||+|+.  +..+|..  +. ...+..+.||+++|+..++..++++|++.+.....+. ..+.+|.
T Consensus       260 t~L~~a~~--~~~Ll~~--~~-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL  320 (327)
T 1sw6_A          260 DSILENLD--LKWIIAN--ML-NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN-KSGLRPV  320 (327)
T ss_dssp             CHHHHHCS--HHHHHHH--TT-TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC-TTSCCGG
T ss_pred             ChhHHHHH--HHHHHHh--CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHH
Confidence            99999987  4444433  22 3456678899999999999999999999988776665 4444444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=2e-22  Score=189.29  Aligned_cols=121  Identities=27%  Similarity=0.227  Sum_probs=113.6

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALH  160 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH  160 (464)
                      ..+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+||..|+.+++++|++. |++++.++. .|+||||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~  145 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALH  145 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHH
Confidence            3456899999999999999999999998 999999999999999999999999999999999 999999955 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.....++|
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l  189 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL  189 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHH
Confidence            99999999999999999999999999999999999876655555

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.86  E-value=4.5e-22  Score=194.60  Aligned_cols=122  Identities=25%  Similarity=0.302  Sum_probs=113.7

Q ss_pred             CCCCCcchhhhh-----hcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          84 MPDGHGSIVNGM-----ENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        84 ~~~g~TpLh~Aa-----~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      +..|.||||+|+     ..++.++++.|++. |...+..+..|+||||+|+..|+.++|++|+++|+++|.+|. .|+||
T Consensus       142 ~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~Tp  219 (276)
T 4hbd_A          142 NRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTA  219 (276)
T ss_dssp             CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCH
T ss_pred             CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCH
Confidence            468999999999     77999999999999 999999999999999999999999999999999999999965 99999


Q ss_pred             HHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHhCC
Q psy6441         159 LHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLGGE  207 (464)
Q Consensus       159 LH~Aa~~G~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~  207 (464)
                      ||+|+..|+.+++++|++ .|++++.+|..|+||||+|+   +.+++++|...
T Consensus       220 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999 89999999999999999996   56888888543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.86  E-value=2.5e-22  Score=191.77  Aligned_cols=151  Identities=19%  Similarity=0.152  Sum_probs=109.7

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      +.+++++|+.++.....+..+.+.....          +.             .....|.||||.|+..|+.+++++|++
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~----------~~-------------~~~~~~~t~L~~A~~~g~~~~v~~Ll~   58 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGM----------RV-------------KFNPLPLALLLDSSLEGEFDLVQRIIY   58 (239)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTS
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCC----------Cc-------------ccCchhhHHHHHHHHcCCHHHHHHHHH
Confidence            4567788888877766653333322111          00             012468899999999999999999999


Q ss_pred             hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE  188 (464)
Q Consensus       109 ~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G  188 (464)
                      . |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus        59 ~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           59 E-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             T-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             c-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence            9 999999999999999999999999999999999999999965 99999999999999999999999999999999888


Q ss_pred             C-chhHhh--c---cHHHHHHH
Q psy6441         189 E-TPLALA--T---KPEVRILL  204 (464)
Q Consensus       189 ~-TPLh~A--~---~~~i~~LL  204 (464)
                      . ||||+|  +   +.+++++|
T Consensus       137 ~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B          137 MQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             CCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CcchHHHHHHhhhccHHHHHHH
Confidence            7 999999  3   35677777

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=1.7e-22  Score=187.49  Aligned_cols=119  Identities=13%  Similarity=0.015  Sum_probs=107.7

Q ss_pred             CCCCcchhhhhhcCCh----hhhhcchhhcCCCcccccchhhhHHHHHHhcCC------HHHHHHHHHCCCCcccccCCC
Q psy6441          85 PDGHGSIVNGMENTHL----NSARLPFSVLGVSDMDRVKYLEEQLREASCLGD------FEAVCELVSKGIDINAQHDMN  154 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~----~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~------~eiVk~LL~~Gadvn~~dd~~  154 (464)
                      ..|+||||+|+..|+.    +++++|++. |++++.+|..|+||||+|+..|+      .+++++|+++|+++|.+|. .
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~  113 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-P  113 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG-G
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC-C
Confidence            3599999999999975    589999999 99999999999999999999987      6789999999999999965 8


Q ss_pred             CC-cHHHHHHHcC-----CHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         155 GW-TALHWAAKRG-----QKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       155 G~-TpLH~Aa~~G-----~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      |+ ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|+   +.+++++|.
T Consensus       114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99 9999999954     4579999999 99999999999999999996   567888773

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.86  E-value=2.3e-22  Score=192.57  Aligned_cols=161  Identities=20%  Similarity=0.155  Sum_probs=129.9

Q ss_pred             CChHhHHHHHH---HhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHH--HHhcCCCCCcchhhhhhcCChhhhh
Q psy6441          30 LTYYSLLNICC---KELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIEL--VLSQMPDGHGSIVNGMENTHLNSAR  104 (464)
Q Consensus        30 l~~~~lL~i~c---~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~--ll~~~~~g~TpLh~Aa~~G~~~iVk  104 (464)
                      ..+.++|++|+   +....+.++.+......+..             ...+..  +...+..|+||||+|+..|+.++|+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~-------------~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  110 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN-------------MREFINSPFRDVYYRGQTALHIAIERRCKHYVE  110 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC-------------HHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHH
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc-------------hHhhhcccccccccCCCCHHHHHHHcCCHHHHH
Confidence            34778999888   56777656555543211100             000000  0111238999999999999999999


Q ss_pred             cchhhcCCCccccc--------------chhhhHHHHHHhcCCHHHHHHHHH---CCCCcccccCCCCCcHHHHHHHcCC
Q psy6441         105 LPFSVLGVSDMDRV--------------KYLEEQLREASCLGDFEAVCELVS---KGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus       105 ~LL~~~ga~~~~~d--------------~~G~TpLh~Aa~~G~~eiVk~LL~---~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      +|++. |++++..+              ..|+||||+|+..|+.+++++|++   +|++++.+|. .|+||||+|+..|+
T Consensus       111 ~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          111 LLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIAD  188 (260)
T ss_dssp             HHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCC
T ss_pred             HHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhcc
Confidence            99999 99999998              589999999999999999999999   9999999965 99999999999888


Q ss_pred             ---------HHHHHHHHHCCCCC-------CCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         168 ---------KDIVSYLLKHGADK-------SLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       168 ---------~eiv~lLL~~GAdi-------n~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                               .+++++|+++|+++       +.+|..|+||||+|+   +.+++++|.
T Consensus       189 ~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  245 (260)
T 3jxi_A          189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII  245 (260)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence                     79999999999999       679999999999996   568888874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.86  E-value=5e-22  Score=192.13  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=131.5

Q ss_pred             CCChHhHHHHHHHh---cCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHh-----cCCCCCcchhhhhhcCCh
Q psy6441          29 ELTYYSLLNICCKE---LNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLS-----QMPDGHGSIVNGMENTHL  100 (464)
Q Consensus        29 ~l~~~~lL~i~c~~---~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~-----~~~~g~TpLh~Aa~~G~~  100 (464)
                      +..+.++|++||..   ...+.++.+........                .+..++.     .+..|.||||+|+..|+.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~----------------~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~  114 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD----------------SLKQFVNASYTDSYYKGQTALHIAIERRNM  114 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT----------------CHHHHHTCCCCSTTTTTCCHHHHHHHTTCH
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc----------------chhHHhhcccccccCCCCCHHHHHHHcCCH
Confidence            45678899999875   66655555444321000                0001111     245899999999999999


Q ss_pred             hhhhcchhhcCCCcccccc--------------hhhhHHHHHHhcCCHHHHHHHHH---CCCCcccccCCCCCcHHHHHH
Q psy6441         101 NSARLPFSVLGVSDMDRVK--------------YLEEQLREASCLGDFEAVCELVS---KGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus       101 ~iVk~LL~~~ga~~~~~d~--------------~G~TpLh~Aa~~G~~eiVk~LL~---~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      ++|++|++. |++++..+.              .|+||||+|+..|+.+++++|++   +|++++.+|. .|+||||+|+
T Consensus       115 ~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~  192 (273)
T 2pnn_A          115 TLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGNTVLHALV  192 (273)
T ss_dssp             HHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHH
T ss_pred             HHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHH
Confidence            999999999 999999997              79999999999999999999999   9999999965 9999999999


Q ss_pred             HcCC---------HHHHHHHHHCCCCCC-------CCCCCCCchhHhhc---cHHHHHHHhCC
Q psy6441         164 KRGQ---------KDIVSYLLKHGADKS-------LLTSKEETPLALAT---KPEVRILLGGE  207 (464)
Q Consensus       164 ~~G~---------~eiv~lLL~~GAdin-------~~D~~G~TPLh~A~---~~~i~~LL~~~  207 (464)
                      ..|+         .+++++|+++|++++       .+|..|+||||+|+   +.+++++|...
T Consensus       193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence            9998         899999999999997       48999999999996   66888888443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=1.7e-21  Score=173.51  Aligned_cols=142  Identities=13%  Similarity=0.068  Sum_probs=107.3

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFS  108 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~  108 (464)
                      .-.+.++++.|+....++.++.+.....-                      +...+..|.||||+|+ .|+.+++++|++
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~   65 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN----------------------PNAPNSYGRRPIQVMM-MGSARVAELLLL   65 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHT
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC----------------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHH
Confidence            34467889999888887755555442211                      1123568999999996 899999999999


Q ss_pred             hcCCCcccccchhhh-HHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy6441         109 VLGVSDMDRVKYLEE-QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK  187 (464)
Q Consensus       109 ~~ga~~~~~d~~G~T-pLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~  187 (464)
                      . |++++.+|..|+| |||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        66 ~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B           66 H-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             T-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred             c-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence            9 9999999999999 99999999999999999999999999955 9999999999999999999999999999999999


Q ss_pred             CCchhHhh
Q psy6441         188 EETPLALA  195 (464)
Q Consensus       188 G~TPLh~A  195 (464)
                      |.||.+-+
T Consensus       144 g~t~~~~~  151 (156)
T 1bi7_B          144 RIDAAEGP  151 (156)
T ss_dssp             --------
T ss_pred             cCcccccC
Confidence            99998743

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=4.7e-21  Score=156.14  Aligned_cols=93  Identities=32%  Similarity=0.438  Sum_probs=85.9

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      +|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence            488999999999999999999998 999999999999999999999999999999999999999954 999999999999


Q ss_pred             CCHHHHHHHHHCCCC
Q psy6441         166 GQKDIVSYLLKHGAD  180 (464)
Q Consensus       166 G~~eiv~lLL~~GAd  180 (464)
                      |+.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.83  E-value=3.8e-21  Score=192.51  Aligned_cols=113  Identities=19%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             CCCCCcchhhhhhcCC---hhhhhcchhhcCCCcccccchhhhHHHHHHh----cCCHHHHHHHHHC-------------
Q psy6441          84 MPDGHGSIVNGMENTH---LNSARLPFSVLGVSDMDRVKYLEEQLREASC----LGDFEAVCELVSK-------------  143 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~---~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~----~G~~eiVk~LL~~-------------  143 (464)
                      +..|+||||+|+..|+   .++++.|++...++++.+|..|+||||+|+.    .|+.+++++|++.             
T Consensus       161 d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i  240 (327)
T 1sw6_A          161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI  240 (327)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHH
Confidence            4567788888888777   6777777777446777777778888888877    7777888777766             


Q ss_pred             -------CCCcccccC------------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchh
Q psy6441         144 -------GIDINAQHD------------------------MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL  192 (464)
Q Consensus       144 -------Gadvn~~dd------------------------~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPL  192 (464)
                             |++++.++.                        ..|+||||+|+..|+.++|++|+++|||++.+|..|+|||
T Consensus       241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  320 (327)
T 1sw6_A          241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  320 (327)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             HhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence                   444444422                        2555555555555555555555555555555555555555


Q ss_pred             Hhhc
Q psy6441         193 ALAT  196 (464)
Q Consensus       193 h~A~  196 (464)
                      |+|+
T Consensus       321 ~~A~  324 (327)
T 1sw6_A          321 DFGA  324 (327)
T ss_dssp             GGTC
T ss_pred             HHHH
Confidence            5554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=2.2e-21  Score=163.60  Aligned_cols=109  Identities=29%  Similarity=0.300  Sum_probs=102.0

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ..+.+|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK-DGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT-TCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCCHHHH
Confidence            4567999999999999999999999999 999999999999999999999999999999999999999965 99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCchh
Q psy6441         162 AAKRGQKDIVSYLLKHGADKSLLTSKEETPL  192 (464)
Q Consensus       162 Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPL  192 (464)
                      |+..|+.+++++|+++||+++.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999884

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=4.4e-21  Score=166.97  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=115.5

Q ss_pred             CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CC
Q psy6441         111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK-EE  189 (464)
Q Consensus       111 ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~-G~  189 (464)
                      +++++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+. |+.+++++|+++|++++.+|.. |+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            578899999999999999999999999999999999999954 99999999999 9999999999999999999999 99


Q ss_pred             chhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCC
Q psy6441         190 TPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       190 TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~  242 (464)
                      ||||+|+   +.+++++|...+......+..+.||+++|....+..+.++|+++++
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999997   5678888754443335556788999999999999999999886643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.82  E-value=1.5e-20  Score=163.32  Aligned_cols=125  Identities=24%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy6441         111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEET  190 (464)
Q Consensus       111 ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~T  190 (464)
                      |+++ .+|..|+||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            5666 7889999999999999999999999999999999954 9999999999999999999999999999999999999


Q ss_pred             hhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         191 PLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       191 PLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      |||+|+   +.+++++|...+......+..+.||+++|.......+...+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            999996   56788887544333355677889999999887666655543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=8.8e-21  Score=188.81  Aligned_cols=135  Identities=24%  Similarity=0.168  Sum_probs=114.2

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCccc------ccchhhhHHHHHHhc---CCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMD------RVKYLEEQLREASCL---GDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~------~d~~G~TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      .++|+.|+..|+.+.++.|+.. |++++.      .+..|+||||+|+..   |+.+++++|+++|+++|.+|. .|+||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-~G~Tp  229 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTA  229 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-TCCCH
T ss_pred             HHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-CCCCH
Confidence            3569999999999999999988 999988      689999999999997   899999999999999999964 99999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCc
Q psy6441         159 LHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLD  230 (464)
Q Consensus       159 LH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h  230 (464)
                      ||+|+..|+.+++++|+++||+++.+|..|+||||+|+   +.+++++|.....      ..+.||+++|+..++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga------~~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA------GTFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH------HTTSSCCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC------CCCCChhHHHHhcCC
Confidence            99999999999999999999999999999999999996   5688888843221      135588888776554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.80  E-value=1.9e-19  Score=156.48  Aligned_cols=123  Identities=26%  Similarity=0.249  Sum_probs=107.7

Q ss_pred             ccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         117 RVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       117 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      ....+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            346789999999999999999999999999999954 9999999999999999999999999999999999999999997


Q ss_pred             ---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         197 ---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       197 ---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                         +.+++++|...+......+..+.||+++|....+..+.++|++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence               56788877544333345567789999999999999999988754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.1e-19  Score=186.54  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=111.1

Q ss_pred             CCCcchhhhhhc-CChhhhhcchhhcCCCccccc--chhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHH
Q psy6441          86 DGHGSIVNGMEN-THLNSARLPFSVLGVSDMDRV--KYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWA  162 (464)
Q Consensus        86 ~g~TpLh~Aa~~-G~~~iVk~LL~~~ga~~~~~d--~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~A  162 (464)
                      .+.|+||.|+.. |+.++++.|++. |++++..+  ..|+||||+|+..|+.+++++|+++|+++|.+|. .|+||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHH
Confidence            456799999999 999999999998 99999998  8999999999999999999999999999999955 999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +..|+.+++++||++||+++.+|..|+||||+|+   +.+++++|.
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999996   668888883

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=5.7e-20  Score=194.72  Aligned_cols=117  Identities=26%  Similarity=0.205  Sum_probs=109.1

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccc------cchhhhHHHHHHh---cCCHHHHHHHHHCCCCcccccCCCCCcH
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDR------VKYLEEQLREASC---LGDFEAVCELVSKGIDINAQHDMNGWTA  158 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~------d~~G~TpLh~Aa~---~G~~eiVk~LL~~Gadvn~~dd~~G~Tp  158 (464)
                      .+.||.|+..|+.++|+.|++. |++++..      +..|+||||+||.   .|+.+++++|+++|+++|.+|. .|+||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~-~g~Tp  210 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTA  210 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS-SSCCH
T ss_pred             HHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC-CCCcH
Confidence            3679999999999999999999 9999887      8899999999966   9999999999999999999965 99999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         159 LHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       159 LH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      ||+||..|+.+++++||++|||++.+|..|+||||+|+   +.+++++|..
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  261 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ  261 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999996   5788888843

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=2.5e-19  Score=176.14  Aligned_cols=115  Identities=22%  Similarity=0.245  Sum_probs=106.5

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcc------cccchhhhHHHHHHhc---CCHHHHHHHHHCCCCcccccCCCCCcHH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDM------DRVKYLEEQLREASCL---GDFEAVCELVSKGIDINAQHDMNGWTAL  159 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~------~~d~~G~TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~dd~~G~TpL  159 (464)
                      ++|+.|+..|+.+.++.++.. |++++      ..+..|+||||+|+..   |+.+++++|+++|+++|.+|. .|+|||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-~g~TpL  209 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTAL  209 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TCCCHH
T ss_pred             hhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-CCCCHH
Confidence            579999999999999999998 88844      4578999999999999   899999999999999999965 999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         160 HWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       160 H~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      |+|+..|+.+++++|+++|||++.+|..|+||||+|+   +.+++++|.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  258 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT  258 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999996   678888884

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=4.5e-19  Score=151.31  Aligned_cols=110  Identities=25%  Similarity=0.281  Sum_probs=94.7

Q ss_pred             cchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc-
Q psy6441         118 VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT-  196 (464)
Q Consensus       118 d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~-  196 (464)
                      +..|.||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ 
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45789999999999999999999999999999955 9999999999999999999999999999999999999999996 


Q ss_pred             --cHHHHHHHhCCCCCcccCCCCCCCcccccCCC
Q psy6441         197 --KPEVRILLGGEPGVTINTADLPIVPNYIKNEP  228 (464)
Q Consensus       197 --~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~  228 (464)
                        +.+++++|...+......+..+.||+++|...
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence              56788887544333355677888999998553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.78  E-value=2.7e-19  Score=163.56  Aligned_cols=132  Identities=22%  Similarity=0.179  Sum_probs=107.9

Q ss_pred             hhhhhcCChhhhhcchhhcCCCcc-----------cccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          92 VNGMENTHLNSARLPFSVLGVSDM-----------DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        92 h~Aa~~G~~~iVk~LL~~~ga~~~-----------~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      ..|++.|..+++++|+.. +....           ..+..|+||||+|+..|+.+++++|++ |++++.++. .|+||||
T Consensus         5 ~~aa~~~~~~~~~~li~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~   81 (183)
T 3deo_A            5 IIGSRTAGEGAMEYLIEW-KDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE-NGRTALL   81 (183)
T ss_dssp             EEEEEEETTTEEEEEEEE-TTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT-TSCCHHH
T ss_pred             HHHHHhcCCchhHHHHHH-hCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC-CCCCHHH
Confidence            467788888888888865 22221           235789999999999999999999999 999999965 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCC-CCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccC
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLT-SKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKN  226 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa  226 (464)
                      +|+..|+.+++++|+++|++++.+| ..|+||||+|+   +.+++++|...+......+..+.||+++|.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A           82 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            9999999999999999999999998 89999999996   567888774433333445666778777664

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.78  E-value=1.1e-20  Score=194.32  Aligned_cols=155  Identities=14%  Similarity=0.027  Sum_probs=128.1

Q ss_pred             HHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCC---cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCc---cccc
Q psy6441          78 ELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVS---DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDI---NAQH  151 (464)
Q Consensus        78 ~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~---~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadv---n~~d  151 (464)
                      ..++..+.++.||||+|+..|+.++|++|++. |+.   .+..+..|.||||+||..|+.++|++|+++|+++   +..+
T Consensus        83 ~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~  161 (376)
T 2aja_A           83 SDAHKKGIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  161 (376)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             HHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Confidence            34556677888999999999999999999998 762   2345568899999999999999999999999862   3332


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCchhHhhc----cHHHHHHHhCCCCCcccCCCCCCCccccc
Q psy6441         152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSL--LTSKEETPLALAT----KPEVRILLGGEPGVTINTADLPIVPNYIK  225 (464)
Q Consensus       152 d~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~--~D~~G~TPLh~A~----~~~i~~LL~~~~~~~~~~~~~~~tpl~la  225 (464)
                      . + +||||+||..|+.++|++|+++|++++.  .|..|+||||+|+    +.+++++|...+ .      .+.||++.|
T Consensus       162 ~-~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a------~~~taL~~A  232 (376)
T 2aja_A          162 E-N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V------MLAYAEIHE  232 (376)
T ss_dssp             H-H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H------HHHHHHHCT
T ss_pred             C-C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C------ccchHHHHH
Confidence            2 3 8999999999999999999999999987  8999999999998    468999995532 2      256999999


Q ss_pred             CCCCcHHHHHHHHhCCC
Q psy6441         226 NEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       226 a~~~h~a~~~~l~sn~~  242 (464)
                      +..++.++.++|.+++.
T Consensus       233 a~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             TTTTTTTHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCc
Confidence            99999999999886643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=7.5e-19  Score=148.31  Aligned_cols=122  Identities=29%  Similarity=0.286  Sum_probs=108.2

Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---
Q psy6441         120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---  196 (464)
Q Consensus       120 ~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---  196 (464)
                      +|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            488999999999999999999999999999855 9999999999999999999999999999999999999999996   


Q ss_pred             cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCC
Q psy6441         197 KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       197 ~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~  242 (464)
                      +.+++++|...+......+..+.||+++|....+..+.++|.++++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            5678888754433334556778899999999999999999987654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=8e-19  Score=142.81  Aligned_cols=85  Identities=39%  Similarity=0.472  Sum_probs=78.6

Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---
Q psy6441         120 YLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---  196 (464)
Q Consensus       120 ~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---  196 (464)
                      +|+||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            489999999999999999999999999999965 9999999999999999999999999999999999999999996   


Q ss_pred             cHHHHHHHh
Q psy6441         197 KPEVRILLG  205 (464)
Q Consensus       197 ~~~i~~LL~  205 (464)
                      +.+++++|.
T Consensus        80 ~~~~~~~Ll   88 (93)
T 1n0q_A           80 HLEVVKLLL   88 (93)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            567888774

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=2.2e-19  Score=168.52  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=122.7

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcC---------------CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccc
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLG---------------VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINA  149 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~g---------------a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~  149 (464)
                      .++.++.+++.+.|....+..+.+. +               .-++..+..|.||||+||..|+.+++++|++.|++++.
T Consensus        23 ~~~~~~~el~~~~Gd~~~v~~~~~~-~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  101 (222)
T 3ehr_A           23 FEPRTPDELYIEEGDIIYITDMSDT-NWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG  101 (222)
T ss_dssp             CCCSSTTBCCCCTTCEEEEEECCSS-SEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCcccccCCCEEEEeccccc-hhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCccc
Confidence            4677788888888887666544332 1               01233556789999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCccccc
Q psy6441         150 QHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIK  225 (464)
Q Consensus       150 ~dd~~G~TpLH~Aa~~G~~eiv~lLL~~-GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~la  225 (464)
                      ++. .|+||||+||..|+.+++++|+++ |++++.+|..|+||||+|+   +.+++++|...+......+..+.||+++|
T Consensus       102 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  180 (222)
T 3ehr_A          102 LDK-AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA  180 (222)
T ss_dssp             CCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence            955 999999999999999999999998 9999999999999999996   56788877544333345667789999999


Q ss_pred             CCCCcHHHHHHHHhCCCCCCCC
Q psy6441         226 NEPLDPRVNDYQVSNQNRTHQT  247 (464)
Q Consensus       226 a~~~h~a~~~~l~sn~~~~~~~  247 (464)
                      ....+..+.+.+...+.....+
T Consensus       181 ~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          181 TNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             CSHHHHHHHC------------
T ss_pred             cchhHHHHHHHHhccchhhhcc
Confidence            9988888888877665554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=4.1e-19  Score=176.74  Aligned_cols=106  Identities=15%  Similarity=0.056  Sum_probs=97.0

Q ss_pred             CCCCCcchhhhhhc---CChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          84 MPDGHGSIVNGMEN---THLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~---G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      +..|.||||+|+..   |+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~  264 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALD  264 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCT-TSCCHHH
T ss_pred             CCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHH
Confidence            45789999999997   899999999999 999999999999999999999999999999999999999955 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhcc
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK  197 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~~  197 (464)
                      +|+..|+.+++++|+++|++      .|.||||+|+.
T Consensus       265 ~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          265 IARKKHHKECEELLEQAQAG------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH------TTSSCCC----
T ss_pred             HHHHcCCHHHHHHHHHhcCC------CCCChhHHHHh
Confidence            99999999999999999987      58999999974

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=8e-19  Score=168.45  Aligned_cols=136  Identities=23%  Similarity=0.182  Sum_probs=113.2

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAK  164 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~  164 (464)
                      ..+.+++.+++..|+.+.+..+... +.   ..+..|.||||+|+..|+.+++++|++ |+++|.++. .|+||||+||.
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~-~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~~A~~   86 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYI-AA---DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE-NGRTALLFVAG   86 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGS-CH---HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT-TSCBHHHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccc-cc---ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC-CCCCHHHHHHH
Confidence            3577888889999998888776554 32   344689999999999999999999999 999999965 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCC-CCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccC
Q psy6441         165 RGQKDIVSYLLKHGADKSLLT-SKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKN  226 (464)
Q Consensus       165 ~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa  226 (464)
                      .|+.+++++|+++|++++.+| ..|+||||+|+   +.+++++|...+......+..+.||+++|+
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            999999999999999999998 88999999996   568888875443333445667778877664

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=7e-18  Score=141.95  Aligned_cols=91  Identities=38%  Similarity=0.453  Sum_probs=84.2

Q ss_pred             cccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhh
Q psy6441         116 DRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA  195 (464)
Q Consensus       116 ~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A  195 (464)
                      .+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            5678999999999999999999999999999999954 999999999999999999999999999999999999999999


Q ss_pred             c---cHHHHHHHhCC
Q psy6441         196 T---KPEVRILLGGE  207 (464)
Q Consensus       196 ~---~~~i~~LL~~~  207 (464)
                      +   +.+++++|...
T Consensus        83 ~~~~~~~~~~~Ll~~   97 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAK   97 (115)
T ss_dssp             HTTTCHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHc
Confidence            6   56788888543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.71  E-value=7.4e-18  Score=165.67  Aligned_cols=95  Identities=12%  Similarity=0.034  Sum_probs=90.9

Q ss_pred             CCCCCcchhhhhhc---CChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          84 MPDGHGSIVNGMEN---THLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~---G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      +..|.||||+|+..   |+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tpL~  243 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLD  243 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred             ccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccC-CCCCHHH
Confidence            35699999999999   899999999999 999999999999999999999999999999999999999965 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCC
Q psy6441         161 WAAKRGQKDIVSYLLKHGAD  180 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAd  180 (464)
                      +|+..|+.+++++|+++|++
T Consensus       244 ~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          244 IAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=3.6e-17  Score=137.60  Aligned_cols=91  Identities=29%  Similarity=0.389  Sum_probs=74.7

Q ss_pred             CcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchh
Q psy6441         113 SDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPL  192 (464)
Q Consensus       113 ~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPL  192 (464)
                      .....+..|+||||+|+..|+.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence            3455677889999999999999999999999999998854 899999999999999999999999999999999999999


Q ss_pred             Hhhc---cHHHHHHH
Q psy6441         193 ALAT---KPEVRILL  204 (464)
Q Consensus       193 h~A~---~~~i~~LL  204 (464)
                      |+|+   +.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            9986   45777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=2e-17  Score=139.19  Aligned_cols=91  Identities=22%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             hcCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHH
Q psy6441          82 SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHW  161 (464)
Q Consensus        82 ~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~  161 (464)
                      ..+.+|.|+||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~   96 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDI   96 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-CCCcHHHH
Confidence            3457899999999999999999999999 999999999999999999999999999999999999999965 99999999


Q ss_pred             HHHcCCHHHHHHH
Q psy6441         162 AAKRGQKDIVSYL  174 (464)
Q Consensus       162 Aa~~G~~eiv~lL  174 (464)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=3.3e-18  Score=175.94  Aligned_cols=123  Identities=17%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             cchhHHHHhhhHHHHHHHhcC-----------CCCCcchhhhhhcCChhhhhcchhhcCCCc---ccccchhhhHHHHHH
Q psy6441          64 KDKDVARLTMFQEIELVLSQM-----------PDGHGSIVNGMENTHLNSARLPFSVLGVSD---MDRVKYLEEQLREAS  129 (464)
Q Consensus        64 ~~~~~a~l~~~~ei~~ll~~~-----------~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~---~~~d~~G~TpLh~Aa  129 (464)
                      +..+.|...+..++...+...           ..|.||||+|+..|+.++|++|++. |+++   +..+.. +||||+||
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-CCHHHHHH
Confidence            455555555555544444322           1345688888888888888888877 6542   222223 78888888


Q ss_pred             hcCCHHHHHHHHHCCCCccc--ccCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc
Q psy6441         130 CLGDFEAVCELVSKGIDINA--QHDMNGWTALHWAA-KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT  196 (464)
Q Consensus       130 ~~G~~eiVk~LL~~Gadvn~--~dd~~G~TpLH~Aa-~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~  196 (464)
                      ..|+.++|++|+++|++++.  .+. .|+||||+|+ ..|+.++|++|+++|++       |.||||+|+
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa  233 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEF  233 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTT
T ss_pred             HCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHH
Confidence            88888888888888877765  543 6778888888 88888888888777653       667777774

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.62  E-value=1e-15  Score=157.00  Aligned_cols=126  Identities=17%  Similarity=0.077  Sum_probs=108.6

Q ss_pred             cccchhhhHHHHHHhc-CCHHHHHHHHHCCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhH
Q psy6441         116 DRVKYLEEQLREASCL-GDFEAVCELVSKGIDINAQHD-MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA  193 (464)
Q Consensus       116 ~~d~~G~TpLh~Aa~~-G~~eiVk~LL~~Gadvn~~dd-~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh  193 (464)
                      .....+.|+||+|+.. |+.+++++|+++|+++|..+. ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3445678999999999 999999999999999999851 58999999999999999999999999999999999999999


Q ss_pred             hhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         194 LAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       194 ~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      +|+   +.+++++|...+......+..+.||+++|....+..++.+|+..+
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            996   567888875444333556778899999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	464
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 3e-15
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  AS +G    V  L+ +G   N   ++   T LH AA+ G  ++  YLL++ A  +  
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 185 TSKEETPLALATK 197
              ++TPL  A +
Sbjct: 63  AKDDQTPLHCAAR 75

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 5e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK 197
              G++ LH AA++G  DIV+ LLK+GA  + ++S   TPLA+A +
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-09
 Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
             S     K     L  A+  G       L+ +    NA    NG T LH A      DI
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDI 180

Query: 171 VSYLLKHGADKSLLTSKEETPL 192
           V  LL  G           TPL
Sbjct: 181 VKLLLPRGGSPHSPAWNGYTPL 202

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L +A+  G  + V  L+  G   N     +G T L  A + G   +   L     + S +
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 392

Query: 185 TSKEETPLALATKPEV 200
              ++  +   + PE 
Sbjct: 393 LVSDKHRM---SFPET 405

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A+  G  E    L+     +NA+   +  T LH AA+ G  ++V  LL++ A+
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PE-VRILLGGEPGVTI 212
           T LH A+  G   IV  LL+ GA  ++   K ETPL +A +    E  + LL  +    +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKV 59

Query: 213 NTAD 216
           N   
Sbjct: 60  NAKA 63

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E V  L+SK  + N   + +G T LH  A+ G   +   L+KHG      
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 185 TSKEETPL 192
           T    TPL
Sbjct: 294 TRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A    + + V  L+ +G   ++    NG+T LH AAK+ Q ++   LL++G   +  
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 185 TSKEETPLALATK 197
           + +  TPL LA +
Sbjct: 228 SVQGVTPLHLAAQ 240

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           A+  G  E V  L+ K           G+T LH AAK G+  +   LL+  A  +     
Sbjct: 106 AAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 164

Query: 188 EETPLALATK 197
             TPL +A  
Sbjct: 165 GLTPLHVAVH 174

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 86  DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGI 145
           +G   +   + + +L+  +L     G S           L  A+     E    L+  G 
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
             NA   + G T LH AA+ G  ++V+ LL   A+ +L      TPL L 
Sbjct: 223 SANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  E +  L+    D+N +   +GWT LH AA  G+++    L+++  D   +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 185 TSKEETPLALATKPEVRILL 204
               +T   +A +  +  L 
Sbjct: 262 NKVGQTAFDVADEDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+  G  EA   LV    D+ A  +  G TA   A     +DI+ YL +    ++LL
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVAD----EDILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
             +       A   G  + V  LL+ GAD +       T L  A
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
              A   GD E V  L+ +G DIN   +++G TALH A      D+V +L+++
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVEN 95

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 93  NGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD 152
            G     +        +L      +   +E   +E   +   +A   L S  I+    H 
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-HA 196

Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT----KPEVRILLGGEP 208
            +G TALH AA +G  +++  L++   D ++      TPL  A     +   RIL+  E 
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV--EN 254

Query: 209 GVTINTAD 216
              +   +
Sbjct: 255 LCDMEAVN 262

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 8e-13
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 1/102 (0%)

Query: 80  VLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCE 139
           + ++  DGH  +   + +      RL        +          L  A        +  
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 140 LVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
           L+  G D  A+    G T L  A  R    +   L  HGA +
Sbjct: 211 LLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 9e-09
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE---TPLALATK 197
             +G TALH A     +  + +LL   A    L  + +   T L LA  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 21/64 (32%), Positives = 26/64 (40%)

Query: 134 FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA 193
            E V  L   G D+N      G T LH A +     ++  LLK GAD +       TPL 
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230

Query: 194 LATK 197
            A  
Sbjct: 231 SALL 234

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 125 LREASCLGDFEAVCELVSKGIDINA--QHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L  A        +  L+            +  G TALH AA  G+   V  L   
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 82  SQMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELV 141
           S+   G  ++    + +++   +      G +   + +  +  +  A+  G  E V  L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 142 SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
            +G  + A  D    TA   A      +IV    +
Sbjct: 242 QQGASVEAV-DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 9e-10
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+ + +   V  LV +      + D +G T +  AA+ G+ ++V YL++ GA    +
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 185 TSKEETPLALATK 197
            + + T   LA  
Sbjct: 251 DATDHTARQLAQA 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 9e-08
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH--------GA 179
               G +     +  + +  N     +  T LHW A     +    L+ H        GA
Sbjct: 8   TEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 65

Query: 180 DKSLLTSKEETPL 192
           D + +   E TPL
Sbjct: 66  DVNAMDCDENTPL 78

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           L  A        V  L+ +  I+IN   D +G TAL  A +   K I   L K GA 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 7e-10
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           L +A    D + V +L+  G ++N Q +  GWT LH A +  ++DIV  LL+H
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH-GADKSLLTSKEETPLA 193
                L+  G D+N +    G T L  A ++    +V  LL+    + +   S  +T L 
Sbjct: 200 AITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 194 LATKPE----VRILLGGEPGVTINTADL 217
           LA + +      +L   + G + +  DL
Sbjct: 259 LAVELKLKKIAELLC--KRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKE-ETPLALATK 197
           +     L  A +    D+V  LL+ GA+ +    +   TPL  A +
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ 48

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 125 LREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQ---KDIVSYLLKHGAD 180
           L +A+  G  E +  L+ + G D+NA  +M     +H          + I   LL HGAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 181 KSLLTSKEETPLALATK---PEVRILLGGEPGVTINTAD 216
            ++   + +TPL LA +     +   L  +  + IN  D
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLLKH-GAD 180
           +    G TAL  AA++G  +++  LL   GAD
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLAL 194
           E      +  +++N   D +G T LHW       ++V +L+KHG+++    +  E+ L  
Sbjct: 87  EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 146

Query: 195 A 195
           A
Sbjct: 147 A 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 144 GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALA 195
              +NAQ D NG T L+ AA+ G   IV  LL +GAD  +       P+   
Sbjct: 249 ANMLNAQ-DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA 163
           L  A+ LG+   V  L+  G D     + +G   + + A
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 300

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 135 EAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           + + +L+++G ++NA  D  G T+LH AA+  + D    LL  
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYL 174
            L  A+  G +EA   L+    +     D         A++R   DIV  L
Sbjct: 159 PLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLL 184
           L  A+ + + EAV  L+    + +AQ D    T L  AA+ G  +    LL + A++ + 
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFANREIT 185

Query: 185 TSKEETPLALATK 197
              +  P  +A++
Sbjct: 186 DHMDRLPRDVASE 198

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 4e-09
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
           G +   ++      L  AS  G    V  LV  G D + + + +  T L  A  R   DI
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDI 225

Query: 171 V 171
           +
Sbjct: 226 L 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 33/68 (48%)

Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE 189
              +  ++ +L+ +          +G +ALH A+ RG   +V  L++ GAD SL     +
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211

Query: 190 TPLALATK 197
           TPL +A  
Sbjct: 212 TPLMVARS 219

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 154 NGWTALHWAAKRGQKDIVSYLLK----HGADKSLLTSKEETPLALATK 197
           +G T LH A  +G    V  L+      G +  +  +  +TPL LA  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 125 LREASCLGDFEAVCELVS----KGIDINAQHDMNGWTALHWAAKR 165
           L  A   G+  AV  LV+     G +++   +    T LH A   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVIT 50

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD--KSLLTSK 187
           C    + +C L++    +        + A   AA+ G   +++ L +       +++ ++
Sbjct: 102 CSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 160

Query: 188 EETPL 192
                
Sbjct: 161 NYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 99  HLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD----MN 154
            L++    F ++  S+  +  Y+   L   +     + +  L+S               +
Sbjct: 257 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 316

Query: 155 GWTALHWAAKRGQKDIVSYLLKHGADKSL 183
               L  A + G +   + LL   +  +L
Sbjct: 317 ANELLRLALRLGNQGACALLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ-HDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
            R A+  G    +  L                + A   AA+ G   +++ L +    +
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 123 EQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSY---LLKHGA 179
           EQ+R+  CL              D + +  +        AA  G    +     LL    
Sbjct: 59  EQVRQLLCLYYAHYNRNAKQLWSDAHKK-GIKSEVICFVAAITGCSSALDTLCLLLTSDE 117

Query: 180 DKSLLTSKEETPLALATK 197
              ++ ++      LA +
Sbjct: 118 IVKVIQAENYQAFRLAAE 135

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 97  NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGW 156
                             + R     +++ +A  L + + V +LV+K             
Sbjct: 224 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS---ECLQGFYML 280

Query: 157 TALHWAAKRGQKDIVSYLLKHGADKSLL-----TSKEETPLALATK 197
             L         D + +LL     K+L             L LA +
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL 183
            L  A+  G  E V  L+ KG  +NA  + NG T LH+AA + + +I   LL+ GA+   
Sbjct: 73  PLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131

Query: 184 LTSKEETPL 192
               E T +
Sbjct: 132 KDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 124 QLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK 176
            L  A      E    LVS+G  I  + +    T L  A   G   I+  +++
Sbjct: 172 PLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 35/117 (29%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQ--------------------------------HD 152
           L  A+     E    L+  G + +A+                                 D
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 166

Query: 153 MNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALATK---PEVRILLGG 206
             G T LH A    + +    L+  GA   +   +E+TPL +A       ++ ++ G
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 132 GDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ 167
           G  E + E +     +  + D +  TALHWA   G 
Sbjct: 14  GKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 125 LREASCLGDFEAVCELVSKGIDINAQH-----DMNGWTALHWAAK---RGQKDIVSYLLK 176
           L EA    D   + +  + G+D+  +           TALH A +   R    IV +L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 177 HGAD 180
           +  +
Sbjct: 70  NSGN 73

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 151 HDMNGWTALHWAAKRGQKDIVSYLLKHGADK 181
            + +G T L  A +   +     L +  + +
Sbjct: 110 ANESGETPLDIAKRLKHEHCEELLTQALSGR 140

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 143 KGIDINAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALATKPEVR 201
            G       D  GWT L  A   G  D    L+ K+GA+  L+ +K      +A   +V+
Sbjct: 160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK 219

Query: 202 ILL 204
              
Sbjct: 220 KFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 133 DFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
             +A   LV K G + +   D  G  A   A     + +  + L +  D
Sbjct: 184 HGDAAVLLVEKYGAEYDLV-DNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 125 LREASCLGDFEAVCELV-SKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
           L +A    +F  V EL+ SK   +  + D +G   LHW+      +I S+LL   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 1/42 (2%)

Query: 157 TALHWAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALATK 197
             LH A    +   V  LL    +           PL  +  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 43

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-07
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 130 CLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHG 178
             G    V  LV          +  G TA   A   G+ ++VS +  +G
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 157 TALHWAAKRGQKDIVSYLLKHGAD 180
             L  AA RG  + ++ LL++  +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN 26

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 146 DINAQHDMNGWTALHWAAKRGQKDIVSYLLKH 177
           D++ + D  G T L  A +RG +D+V  L  H
Sbjct: 125 DLHRR-DARGLTPLELALQRGAQDLVDILQGH 155

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 31/70 (44%), Positives = 37/70 (52%)

Query: 128 ASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSK 187
           AS  G    V  LVS G D+NAQ   NG TALH A      D+VS LLK GAD + +T +
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 188 EETPLALATK 197
             +P  L   
Sbjct: 178 GYSPYQLTWG 187

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 154 NGWTALHWAAKRGQ----KDIVSYLLKHGADKSLLTSKEETPLALATKP 198
           +G + LH A    +     +++  +    A  +   + ++TPL LA   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDI 170
           G     +       L  A+     E V  L+  G D++ Q      TA   +   G +D+
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDL 148

Query: 171 VSYL 174
              L
Sbjct: 149 AEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 152 DMNGWTALHWAAKRGQKDIVSYLLKHGAD 180
           D+     L  AA+ GQ D V  L+ +GA 
Sbjct: 1   DLG--KKLLEAARAGQDDEVRILMANGAP 27

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 140 LVSKGIDINAQHDMNGWTA--LHWAAKRGQKDIVSYLLKHGA 179
           LV  G  + A    +  TA       + G      +L     
Sbjct: 86  LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 150 QHDMNGWTALHWAAKRGQKDIVSYLL 175
             D  G   +  A + G +D+  YL 
Sbjct: 97  VRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 155 GWTALHWAAKRGQKDIVSYLLKHGA 179
               L  AA RG+ + V  LL+ GA
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGA 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	464
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.85
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.82
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.81
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.8
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.77
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.77
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.73
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.73
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.72
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.71
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.62

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.7e-26  Score=193.60  Aligned_cols=115  Identities=25%  Similarity=0.267  Sum_probs=109.1

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      .|||++|++.|+.++|++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++|.+|. .|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~-~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS-SCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeeccc-ccccchhhhhhcCc
Confidence            4799999999999999999999 999999999999999999999999999999999999999954 99999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         168 KDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       168 ~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      .+++++|+++|+|++.+|..|+||||+|.+..+..+|
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~i~~LL  117 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL  117 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCSSTTTGGGG
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHhHHHHHHhc
Confidence            9999999999999999999999999999876666655

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.8e-24  Score=197.18  Aligned_cols=200  Identities=17%  Similarity=0.073  Sum_probs=132.5

Q ss_pred             HHHHHHhcCCCCHHHHHHhcC----CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhhcCChhhh
Q psy6441          36 LNICCKELNIDSPQTILKIRK----LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGMENTHLNSA  103 (464)
Q Consensus        36 L~i~c~~~~i~~~~~l~~~~~----l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~~G~~~iV  103 (464)
                      +...|..+.++.++.+.....    ..+..+.++++.|...+..++..++..        ...+.++++.|+..|+.+++
T Consensus         7 ~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (223)
T d1uoha_           7 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIV   86 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchh
Confidence            344455555554444433221    233344455666655555554443332        14566777788888888888


Q ss_pred             hcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy6441         104 RLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSL  183 (464)
Q Consensus       104 k~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~  183 (464)
                      ++|++. +++++..|..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+..|++++.
T Consensus        87 ~~Ll~~-~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~-~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~  164 (223)
T d1uoha_          87 KALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYKASTNI  164 (223)
T ss_dssp             HHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHhcc-CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCccchhhhhcCCcchhhhhccccceeee
Confidence            888777 777777787888888888888888888888888888877743 777888888888888888888888888888


Q ss_pred             CCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         184 LTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       184 ~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      +|..|+||||+|+   +.+++++|...+......+..+.||+++|. .++..+.+.|+
T Consensus       165 ~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             ccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            8888888888875   446666664332222445566778887764 46666666654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.9e-24  Score=198.61  Aligned_cols=181  Identities=17%  Similarity=0.082  Sum_probs=146.9

Q ss_pred             hhccchhHHHHhhhHHHHHHHh-----------cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHH
Q psy6441          61 IIRKDKDVARLTMFQEIELVLS-----------QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREAS  129 (464)
Q Consensus        61 ~~~~~~~~a~l~~~~ei~~ll~-----------~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa  129 (464)
                      .+.+..|.|...+..++...+.           .+..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccchhhhhhh
Confidence            3456677777766655544332           235789999999999999999999999 9999999999999999999


Q ss_pred             hcCCHHHHHHHHHCCC-----------------------------------------------CcccccCCCCCcHHHHH
Q psy6441         130 CLGDFEAVCELVSKGI-----------------------------------------------DINAQHDMNGWTALHWA  162 (464)
Q Consensus       130 ~~G~~eiVk~LL~~Ga-----------------------------------------------dvn~~dd~~G~TpLH~A  162 (464)
                      ..|+.+++++|++.+.                                               +++.+ +..|+||||+|
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~-d~~g~TpLh~A  165 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVA  165 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHHHH
T ss_pred             ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc-cccCccccccc
Confidence            9999999999876432                                               13344 35799999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC-CCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         163 AKRGQKDIVSYLLKHGADKSLL-TSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       163 a~~G~~eiv~lLL~~GAdin~~-D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      |..|+.+++++|+++|++.+.. +..|+||||+|+   +.+++++|...+......+..+.||+++|....+..+.+.|+
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999998864 678999999996   567888775443333556777899999999999999999999


Q ss_pred             hCCCC
Q psy6441         239 SNQNR  243 (464)
Q Consensus       239 sn~~~  243 (464)
                      +++++
T Consensus       246 ~~Ga~  250 (255)
T d1oy3d_         246 AHGAP  250 (255)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            98875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-23  Score=193.91  Aligned_cols=176  Identities=18%  Similarity=0.173  Sum_probs=113.2

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCchh---hhccchhHHHHhhhHHHHHHHh--------cCCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPNT---IIRKDKDVARLTMFQEIELVLS--------QMPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~---~~~~~~~~a~l~~~~ei~~ll~--------~~~~g~TpLh~Aa~   96 (464)
                      .+..++++||+|+..+..+.++.+.........   ........+......++...+.        .+..|.||||+|+.
T Consensus        33 ~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          33 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHH
Confidence            455567777777777777655555443322211   1112233333333333333222        23567777777777


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .|+.+++++|++. |++++.++..|.||||+|+..++.+++++|+..|++++.++. +|+||||+|+..|+.++|++||+
T Consensus       113 ~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~-~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         113 KNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccC-CCCceeccccccCcHHHHHHHHH
Confidence            7777777777776 777777777777777777777777777777777777777744 77777777777777777777777


Q ss_pred             CCCCCCCCCCCCCchhHhhc--cHHHHHHHh
Q psy6441         177 HGADKSLLTSKEETPLALAT--KPEVRILLG  205 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~--~~~i~~LL~  205 (464)
                      +|||++.+|.+|+||||+|.  +.+|+++|.
T Consensus       191 ~Gad~~~~d~~g~tpl~~A~~~~~~i~~~Ll  221 (223)
T d1uoha_         191 QGASIYIENKEEKTPLQVAKGGLGLILKRMV  221 (223)
T ss_dssp             TTCCSCCCCTTSCCHHHHCCTTHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHCCCHHHHhccc
Confidence            77777777777777777774  345555553

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.6e-23  Score=195.70  Aligned_cols=180  Identities=20%  Similarity=0.123  Sum_probs=148.8

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcC------CchhhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRK------LPNTIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~------l~~~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      .|.++||+||+......++.+.....      ..+....++.+.|...+..++...+..        +.+|.||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            56899999999999988887766542      222344577888888777776655433        3689999999999


Q ss_pred             cCChhhhhcchhh----------------------------------------------cCCCcccccchhhhHHHHHHh
Q psy6441          97 NTHLNSARLPFSV----------------------------------------------LGVSDMDRVKYLEEQLREASC  130 (464)
Q Consensus        97 ~G~~~iVk~LL~~----------------------------------------------~ga~~~~~d~~G~TpLh~Aa~  130 (464)
                      .|+.++++.|++.                                              .+.+++.++..|+||||+|+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            9999999888652                                              122335677889999999999


Q ss_pred             cCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCC
Q psy6441         131 LGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGE  207 (464)
Q Consensus       131 ~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~  207 (464)
                      .|+.+++++|++.+++.+..++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             ccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999776678999999999999999999999999999999999999999995   67899998655


Q ss_pred             CCC
Q psy6441         208 PGV  210 (464)
Q Consensus       208 ~~~  210 (464)
                      ++.
T Consensus       248 Ga~  250 (255)
T d1oy3d_         248 GAP  250 (255)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.3e-24  Score=182.40  Aligned_cols=119  Identities=17%  Similarity=0.182  Sum_probs=109.5

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      .+.++||+|+..|++++|++|++. |++++.++..|+||||+| ..|+.+++++|+++|++++.++...+.||||+|+..
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCcccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            467899999999999999999998 999999999999999976 479999999999999999999764445799999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      |+.+++++|+++|++++.+|..|+||||+|+   +.+++++|..
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999996   5789999854

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9e-23  Score=176.42  Aligned_cols=114  Identities=21%  Similarity=0.246  Sum_probs=105.3

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      +.|+.||..|+.++|+.|++. |++++.+|..|+||||+|+..|+.+++++|++.|++++.+|. +|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccc-cCcccccccchhhHH
Confidence            568999999999999999999 999999999999999999999999999999999999999955 999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCC-CCCchhHhhc-----cHHHHHHH
Q psy6441         169 DIVSYLLKHGADKSLLTS-KEETPLALAT-----KPEVRILL  204 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~-~G~TPLh~A~-----~~~i~~LL  204 (464)
                      +++++|+++||+++.++. .|+||++++.     +.+++++|
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            999999999999998875 5889988773     34788877

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-22  Score=175.77  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=134.9

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      ++||+||..|+.++|++|++. |++++.+|..|+||||+|+ .|+.+++++|+++|++++.++. .|.++|++++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccc-cCccccccccccccc
Confidence            789999999999999999999 9999999999999999885 7899999999999999999955 999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh-CCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCC
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG-GEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQ  241 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~-~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~  241 (464)
                      +++++|+.++.+++..|..|.+|+|+|+   +.+++++|. ..+......+..+.||+++|....+.+++++|++++
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999996   456776663 333344666778899999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.5e-22  Score=175.56  Aligned_cols=149  Identities=19%  Similarity=0.214  Sum_probs=128.4

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      +.|+.||..|+.++|+.|+...+++++..|..|+||||+|+ .|+.+++++|++++++++..+. .|++||++|+..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            34899999999999999998768899999999999999886 4888999999999999998854 899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhC
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn  240 (464)
                      +++++++++|++++.+|..|+||||+|+   +.+++++|..+.+. ...+..|.||+++|...++.++.++|+++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999996   56788888755444 44567788999999999999999988864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.4e-21  Score=174.24  Aligned_cols=150  Identities=16%  Similarity=0.030  Sum_probs=121.3

Q ss_pred             CCCCcchhhhhhcCChhhhhcchh---hcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC---------
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFS---VLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD---------  152 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~---~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd---------  152 (464)
                      .+|+||||+||..|+.++|+.|++   ..|++++.+|..|+||||+|+..|+.+++++|+++|++++....         
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            379999999999999999998885   24899999999999999999999999999999999988665532         


Q ss_pred             -------------------------------------------------------------CCCCcHHHHHHHcCCHHHH
Q psy6441         153 -------------------------------------------------------------MNGWTALHWAAKRGQKDIV  171 (464)
Q Consensus       153 -------------------------------------------------------------~~G~TpLH~Aa~~G~~eiv  171 (464)
                                                                                   ..|+++||+|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                         3577888888888888888


Q ss_pred             HHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHH
Q psy6441         172 SYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVN  234 (464)
Q Consensus       172 ~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~  234 (464)
                      +.++++|.+++.+|..|.||||+|+   +.+++++|...+......+..|.||+++|....+.+++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            8888888888888888889998886   55777777433322244566788888888877766554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3e-21  Score=178.51  Aligned_cols=176  Identities=17%  Similarity=0.158  Sum_probs=135.3

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCc------hhhhccchhHHHHhhhHHHHHHHhc----------CCCCCcch
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLP------NTIIRKDKDVARLTMFQEIELVLSQ----------MPDGHGSI   91 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~------~~~~~~~~~~a~l~~~~ei~~ll~~----------~~~g~TpL   91 (464)
                      .+..+.++|++|+.....+.++.+.....-+      ........+.+......++......          +..+.+++
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566888999999988887777766543211      1122234445554444444332221          24677889


Q ss_pred             hhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCC-CCcccccCCCCCcHHHHHHHcCCHHH
Q psy6441          92 VNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKG-IDINAQHDMNGWTALHWAAKRGQKDI  170 (464)
Q Consensus        92 h~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~G-advn~~dd~~G~TpLH~Aa~~G~~ei  170 (464)
                      +.++..++.++++.|+.. +...+..+..|+||||+|+..|+.+++++|++.| .+++.+|. +|+||||+|+..|+.++
T Consensus       110 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~-~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             ccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhccccccccccccccccccccccc-ccCCchhhhcccccHHH
Confidence            999999999999999888 8888888889999999999999999999999886 67888854 89999999999999999


Q ss_pred             HHHHHH-CCCCCCCCCCCCCchhHhhccHHHHHHHh
Q psy6441         171 VSYLLK-HGADKSLLTSKEETPLALATKPEVRILLG  205 (464)
Q Consensus       171 v~lLL~-~GAdin~~D~~G~TPLh~A~~~~i~~LL~  205 (464)
                      |++|++ .|+|++.+|..|+||||+|++.+++++|.
T Consensus       188 v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~~~~~Ll  223 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFL  223 (229)
T ss_dssp             HHHHHHHHCCCSCCCCTTSCCTGGGCSCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcCCCCCCHHHHHhhHHHHHHHH
Confidence            999986 58999999999999999998888888874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=2e-21  Score=183.93  Aligned_cols=90  Identities=17%  Similarity=0.050  Sum_probs=72.3

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhh-------cCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCc
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSV-------LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWT  157 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~-------~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~T  157 (464)
                      +.|+||||+||..|+.++|+.|+..       .|+++|.+|..|+||||+|+..|+.++|++|+++|++++.++. .|.|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~-~g~t  109 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK-SERS  109 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccc-cccc
Confidence            4688999999999999999887532       2789999999999999999999999999999999999888854 6777


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q psy6441         158 ALHWAAKRGQKDIVSYLL  175 (464)
Q Consensus       158 pLH~Aa~~G~~eiv~lLL  175 (464)
                      |||+|+..++.+++.++.
T Consensus       110 ~l~~a~~~~~~~~~~~l~  127 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYML  127 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHT
T ss_pred             cccchhhhcchhhhhhhh
Confidence            777777766655555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=165.51  Aligned_cols=119  Identities=23%  Similarity=0.228  Sum_probs=110.5

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      +..|+||||+|+. |+.+++++|++. +.+++..+..|.+||++|+..++.+++++++++|+++|.++ ..|+||||+||
T Consensus        33 d~~g~t~L~~A~~-~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~-~~~~t~L~~A~  109 (156)
T d1bd8a_          33 NRFGKTALQVMMF-GSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD-GTGALPIHLAV  109 (156)
T ss_dssp             CTTSCCHHHHSCT-TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHH
T ss_pred             CCCCCcccccccc-cccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-CCCCeeecccc
Confidence            4689999999875 889999999998 99999999999999999999999999999999999999995 49999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhC
Q psy6441         164 KRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGG  206 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~  206 (464)
                      ..|+.+++++|+ .|++++.+|.+|+||||+|+   +.+++++|..
T Consensus       110 ~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         110 QEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999887 79999999999999999996   6789998853

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=174.81  Aligned_cols=157  Identities=20%  Similarity=0.107  Sum_probs=113.2

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccc-----ccCCCCCc
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINA-----QHDMNGWT  157 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~-----~dd~~G~T  157 (464)
                      ++.+|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.++++.|+..+.....     .....|.|
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhcccccccccccccccccch
Confidence            346788888888888888888888887 788888888888888888888888888888776544221     11235778


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         158 ALHWAAKRGQKDIVSYLLKHGADKSLLT-SKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       158 pLH~Aa~~G~~eiv~lLL~~GAdin~~D-~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                      |||+|+..|+.+++++|+..|++++..+ .+|+||||+|+   +.+++++|...+......+..|.||+++|....+..+
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            8888888888888888888887777664 46888888885   4566676644332234456677788888888788887


Q ss_pred             HHHHHhC
Q psy6441         234 NDYQVSN  240 (464)
Q Consensus       234 ~~~l~sn  240 (464)
                      .+++.+.
T Consensus       194 ~~~l~~~  200 (221)
T d1iknd_         194 QQQLGQL  200 (221)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHc
Confidence            7777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.8e-20  Score=163.21  Aligned_cols=146  Identities=23%  Similarity=0.193  Sum_probs=94.4

Q ss_pred             cchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH
Q psy6441          89 GSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK  168 (464)
Q Consensus        89 TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~  168 (464)
                      ||||.||+.|+.++|++||+. |++++ .|..|+||||+|+..++.++++.++.........+ ..+.+++++++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            677777777777777777776 66655 46677777777777777777777766655555443 3566677777777777


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         169 DIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       169 eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      +++++|+.+|++++.+|.+|+||||+|+   +.+++++|...+......+..|.||+++|+..++.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777777677777666777777777764   34555555332222233455566777777666666666543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=5e-21  Score=181.17  Aligned_cols=192  Identities=16%  Similarity=0.160  Sum_probs=145.3

Q ss_pred             ChHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhc
Q psy6441          31 TYYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVL  110 (464)
Q Consensus        31 ~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~  110 (464)
                      .++++||+||..+..+.++.+.....  ...            +.....+...+.+|+||||+|+..|+.++|++|++. 
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~--~~~------------l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-   96 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEA--KEC------------IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-   96 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHH--HHH------------HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcch--hHH------------HHcCCCccccCCCCCeeecccccccccccccccccc-
Confidence            47899999999988876655442110  000            000001234567999999999999999999999998 


Q ss_pred             CCCcccccchhhhHHHHHHhcCCHHHHHHHHHCC---CC-----------------------------------------
Q psy6441         111 GVSDMDRVKYLEEQLREASCLGDFEAVCELVSKG---ID-----------------------------------------  146 (464)
Q Consensus       111 ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~G---ad-----------------------------------------  146 (464)
                      |++++.+|..|.|||++|+..++.++++++...+   ..                                         
T Consensus        97 Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (277)
T d2fo1e1          97 GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG  176 (277)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS
T ss_pred             ccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccc
Confidence            9999999999999999999999998888775432   01                                         


Q ss_pred             ---cccccCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCC
Q psy6441         147 ---INAQHDMNGWTALHWAAKRGQKDIVSYLL-KHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPI  219 (464)
Q Consensus       147 ---vn~~dd~~G~TpLH~Aa~~G~~eiv~lLL-~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~  219 (464)
                         .+.. +..|+||||+++..++.+++++++ ..|.+.+.+|..|+||||+|+   +.+++++|...+......+..|.
T Consensus       177 ~~~~~~~-~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~  255 (277)
T d2fo1e1         177 AARKDSE-KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH  255 (277)
T ss_dssp             GGGTSSS-SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred             ccccccc-ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCC
Confidence               1112 246899999999999999998755 578999999999999999996   45777777443332344567788


Q ss_pred             CcccccCCCCcHHHHHHHH
Q psy6441         220 VPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       220 tpl~laa~~~h~a~~~~l~  238 (464)
                      ||+++|...++.++++.|.
T Consensus       256 T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         256 TARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=7.5e-20  Score=175.03  Aligned_cols=173  Identities=17%  Similarity=0.137  Sum_probs=118.2

Q ss_pred             hHhHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcC
Q psy6441          32 YYSLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLG  111 (464)
Q Consensus        32 ~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~g  111 (464)
                      ..+++..||..+.++.++.++..+.-+                      ...+.+|.||||+|+..|+.++|++|++. |
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv----------------------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~   96 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI----------------------NYANVDGLTALHQACIDDNVDMVKFLVEN-G   96 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT----------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC----------------------CccCCCCCcHHHHHHhcCCceeeeeeccc-c
Confidence            456777777777776666555433111                      12245666666666666666666666666 6


Q ss_pred             CCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCccccc----------------------------------------
Q psy6441         112 VSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQH----------------------------------------  151 (464)
Q Consensus       112 a~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~d----------------------------------------  151 (464)
                      ++....+..+.+||++|+..|+.++++.|+++|+..+..+                                        
T Consensus        97 ~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (291)
T d1s70b_          97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (291)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccccc
Confidence            6666666666666666666666666666666654433221                                        


Q ss_pred             -------------------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCC
Q psy6441         152 -------------------DMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPG  209 (464)
Q Consensus       152 -------------------d~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~  209 (464)
                                         +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|...+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga  256 (291)
T d1s70b_         177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (291)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence                               246889999999999999999999999999999999999999996   5678877743332


Q ss_pred             CcccCCCCCCCcccccCC
Q psy6441         210 VTINTADLPIVPNYIKNE  227 (464)
Q Consensus       210 ~~~~~~~~~~tpl~laa~  227 (464)
                      .....+..|.||+++|+.
T Consensus       257 dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         257 DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CTTCCCTTSCCTTTSCCS
T ss_pred             CCCCcCCCCCCHHHHHHH
Confidence            223445677899998875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.7e-20  Score=183.10  Aligned_cols=209  Identities=19%  Similarity=0.133  Sum_probs=162.7

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcC---CchhhhccchhHHHHhhhHHHHHHHh--------cCCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRK---LPNTIIRKDKDVARLTMFQEIELVLS--------QMPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~---l~~~~~~~~~~~a~l~~~~ei~~ll~--------~~~~g~TpLh~Aa~   96 (464)
                      .+..+..+++.++....++.++.+.....   ..........+.+......+....+.        .+..+.||||.|+.
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHH
Confidence            34456789999999888876666665433   22233334445555444444333322        23578899999999


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .++.++++.++.. +...+..+..|.|||+.|+..++.+++++|+++|++++..+. .+.||||.|+..++.++++++++
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~-~~~t~L~~~~~~~~~~~~~~ll~  318 (408)
T d1n11a_         241 EGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQ  318 (408)
T ss_dssp             TTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             hCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccc-cccccchhhcccCcceeeeeecc
Confidence            9999999999888 888888899999999999999999999999999999998854 88999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         177 HGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                      .|++++.+|.+|.||||+|+   +.+++++|...+...+..+..|.||+++|...+|.+++++|.
T Consensus       319 ~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999996   567887774433333456777889999999999999888765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=1.2e-19  Score=173.54  Aligned_cols=168  Identities=21%  Similarity=0.150  Sum_probs=135.3

Q ss_pred             CCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHc
Q psy6441          86 DGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKR  165 (464)
Q Consensus        86 ~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~  165 (464)
                      ++.|+|+.||..|+.++|++||+. |++++.+|..|+||||+|+..|+.++|++|+++|++.+..+ ..+.||||+|+..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~~~~~L~~a~~~  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-NEGWIPLHAAASC  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccc-ccccccccccccc
Confidence            345899999999999999999999 99999999999999999999999999999999999998884 4899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCchhHhhc-------------------------------------------------
Q psy6441         166 GQKDIVSYLLKHGADKSLLTSKEETPLALAT-------------------------------------------------  196 (464)
Q Consensus       166 G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~-------------------------------------------------  196 (464)
                      |+.++++.|+++|+..+..|..|.+|+++|+                                                 
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            9999999999999988887777777766553                                                 


Q ss_pred             --------------cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCc
Q psy6441         197 --------------KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNV  256 (464)
Q Consensus       197 --------------~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~  256 (464)
                                    +.++++.|...+...+..+..+.||+++|+..++..++++|+.+++....+. ..+.+|.
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d-~~G~TaL  269 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN-KVGQTAF  269 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCTT
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHH
Confidence                          1233444433222223456677888888888888888888888877665554 3444433

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=181.32  Aligned_cols=175  Identities=26%  Similarity=0.292  Sum_probs=141.4

Q ss_pred             cCCChHhHHHHHHHhcCCCCHHHHHHhcCCch---hhhccchhHHHHhhhHHHHHHHhc--------CCCCCcchhhhhh
Q psy6441          28 TELTYYSLLNICCKELNIDSPQTILKIRKLPN---TIIRKDKDVARLTMFQEIELVLSQ--------MPDGHGSIVNGME   96 (464)
Q Consensus        28 ~~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~---~~~~~~~~~a~l~~~~ei~~ll~~--------~~~g~TpLh~Aa~   96 (464)
                      .+..+.++++.++..........+........   ....+..+.+......++......        +..|.|||+.|+.
T Consensus       194 ~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  273 (408)
T d1n11a_         194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ  273 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhh
Confidence            45556788888888777665555444333221   122234455555555444433332        3578999999999


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .++.+++++|++. |++++..+..+.||||.|+..++.++++++++.|+++|.+|. +|+||||+|++.|+.++|++|++
T Consensus       274 ~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~-~G~T~Lh~A~~~g~~~iv~~Ll~  351 (408)
T d1n11a_         274 EGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLK  351 (408)
T ss_dssp             HTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeeeccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998 999999999999999999999999999999999999999964 99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHhhc---cHHHHHHH
Q psy6441         177 HGADKSLLTSKEETPLALAT---KPEVRILL  204 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~---~~~i~~LL  204 (464)
                      +|||++.+|.+|+||||+|+   +.+++++|
T Consensus       352 ~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         352 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999995   66888877

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.8e-19  Score=165.68  Aligned_cols=160  Identities=14%  Similarity=0.029  Sum_probs=70.1

Q ss_pred             CCcchhhhhhcCChhhhhcchhh---cCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHH
Q psy6441          87 GHGSIVNGMENTHLNSARLPFSV---LGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAA  163 (464)
Q Consensus        87 g~TpLh~Aa~~G~~~iVk~LL~~---~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa  163 (464)
                      |.||||+|+..|+.+++..|++.   .+++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d-~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-FRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-TTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccc-ccccccccccc
Confidence            44555555555544433333321   144444455555555555555555555555555555555442 24555555555


Q ss_pred             HcCCHHHHHHHHHCCCCCC------CCCCCCCchhHhhc---cHHHHHHH-hCCCCCcccCCCCCCCcccccCCCCcHHH
Q psy6441         164 KRGQKDIVSYLLKHGADKS------LLTSKEETPLALAT---KPEVRILL-GGEPGVTINTADLPIVPNYIKNEPLDPRV  233 (464)
Q Consensus       164 ~~G~~eiv~lLL~~GAdin------~~D~~G~TPLh~A~---~~~i~~LL-~~~~~~~~~~~~~~~tpl~laa~~~h~a~  233 (464)
                      ..|+.++++.|++.+.+..      .....|.||||+|+   +.+++.+| ..+.......+..|.||++.|...+++.+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            5555555555554433321      22233445555543   22333333 22222222233334455555555555555


Q ss_pred             HHHHHhCCCCCCCC
Q psy6441         234 NDYQVSNQNRTHQT  247 (464)
Q Consensus       234 ~~~l~sn~~~~~~~  247 (464)
                      .++|++.+.....+
T Consensus       161 v~~Ll~~gad~~~~  174 (221)
T d1iknd_         161 VSLLLKCGADVNRV  174 (221)
T ss_dssp             HHHHHTTTCCSCCC
T ss_pred             HHHHHhcCCccccc
Confidence            55555444443333

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=6.1e-20  Score=163.78  Aligned_cols=114  Identities=22%  Similarity=0.263  Sum_probs=100.6

Q ss_pred             chhhhhhcCChhhhhcchhhcCCCcccc------cchhhhHHHHHHhc---CCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          90 SIVNGMENTHLNSARLPFSVLGVSDMDR------VKYLEEQLREASCL---GDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        90 pLh~Aa~~G~~~iVk~LL~~~ga~~~~~------d~~G~TpLh~Aa~~---G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      .|+.|++.+++..+..++.. |++++..      +..|+||||+|++.   |+.++|++|+++|+++|.+|. .|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~-~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh-hhccccc
Confidence            35678889999999888887 7776654      67899999999974   678999999999999999955 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         161 WAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +||..|+.+++++|+++|++++.+|..|+||||+|+   +.+++++|.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~  134 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT  134 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999996   568888883

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.2e-19  Score=164.61  Aligned_cols=203  Identities=16%  Similarity=0.066  Sum_probs=115.5

Q ss_pred             hHHHHHHHhcCCCCHHHHHHhcC----CchhhhccchhHHHHhhhHHHHHHHhc-----------CCCCCcchhhhhhcC
Q psy6441          34 SLLNICCKELNIDSPQTILKIRK----LPNTIIRKDKDVARLTMFQEIELVLSQ-----------MPDGHGSIVNGMENT   98 (464)
Q Consensus        34 ~lL~i~c~~~~i~~~~~l~~~~~----l~~~~~~~~~~~a~l~~~~ei~~ll~~-----------~~~g~TpLh~Aa~~G   98 (464)
                      .+||.||....++.++.+.....    ..+..+.++.+.|...+..++..++.+           +..|.+++|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            37899999988876665554321    112222233444443333333332211           123344444444444


Q ss_pred             ChhhhhcchhhcCCC--cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          99 HLNSARLPFSVLGVS--DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        99 ~~~iVk~LL~~~ga~--~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      ..++++.++.. +..  ....+..+.|+|++++..++.+++++|+..|.+.+.++ ..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          82 NLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             CHHHHHHHHSS-SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccc-cccccccccccccccccccccccchhhhhhhhhhhcccccccC-CCCCCccchhhhcccccccccccc
Confidence            44444444433 222  22233445555666666666666777777777776664 377777777777777777777777


Q ss_pred             CC-CCCCCCCCCCCchhHhhc---cHHHHHHHhCC--CCCcccCCCCCCCcccccCCCCcHHHHHHHHhCCC
Q psy6441         177 HG-ADKSLLTSKEETPLALAT---KPEVRILLGGE--PGVTINTADLPIVPNYIKNEPLDPRVNDYQVSNQN  242 (464)
Q Consensus       177 ~G-Adin~~D~~G~TPLh~A~---~~~i~~LL~~~--~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~  242 (464)
                      .| .+++.+|..|+||||+|+   +.+++++|...  .+. ...+..|.||+++|..   ..+.++|++++.
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC-CCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            75 567777777777777775   45666665432  233 3345667777777653   456667666553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.4e-19  Score=163.22  Aligned_cols=174  Identities=18%  Similarity=0.144  Sum_probs=140.6

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCch---hhhccchhHHHHhhhHHHHHHHhc---------CCCCCcchhhhhh
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPN---TIIRKDKDVARLTMFQEIELVLSQ---------MPDGHGSIVNGME   96 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~---~~~~~~~~~a~l~~~~ei~~ll~~---------~~~g~TpLh~Aa~   96 (464)
                      +-.+.++|++||..+..+.++.+.....-++   .......+................         ...|.++.+.+..
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3467899999999999988888777543322   222233333333333222222221         1467788888888


Q ss_pred             cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy6441          97 NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLK  176 (464)
Q Consensus        97 ~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~  176 (464)
                      .......+.|+.. +++++..+..|+|||++|+..|..++++.|++.+++++..|+ .|+||||+||..|+.+++++|++
T Consensus       100 ~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~  177 (209)
T d1ot8a_         100 LAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD-KDETPLFLAAREGSYEASKALLD  177 (209)
T ss_dssp             TTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeecccccccccccc-ccccccchhccccHHHHHHHHHH
Confidence            8888888888887 999999999999999999999999999999999999999965 99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHhhc---cHHHHHHH
Q psy6441         177 HGADKSLLTSKEETPLALAT---KPEVRILL  204 (464)
Q Consensus       177 ~GAdin~~D~~G~TPLh~A~---~~~i~~LL  204 (464)
                      +|||++.+|..|+||||+|+   +.+|+++|
T Consensus       178 ~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         178 NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999996   67899988

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.6e-19  Score=157.10  Aligned_cols=146  Identities=23%  Similarity=0.286  Sum_probs=125.8

Q ss_pred             hHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCC
Q psy6441          34 SLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVS  113 (464)
Q Consensus        34 ~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~  113 (464)
                      ++|+.|++.+..+.++.++....-                       ...+..|+||||+|+..++.++++.++.. ...
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~-----------------------~~~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~   59 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP-----------------------FTTDWLGTSPLHLAAQYGHFSTTEVLLRA-GVS   59 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC-----------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-----------------------cccccCCCccccccccccccccccccccc-ccc
Confidence            567778888777766655543210                       01256899999999999999999999888 666


Q ss_pred             cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhH
Q psy6441         114 DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLA  193 (464)
Q Consensus       114 ~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh  193 (464)
                      ....+..+.+++++++...+.+++++++.+|++.+.++ ..|+||||+||..|+.+++++|+++|+|++.+|.+|+||||
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccceeeecccccCCcccccc-ccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHH
Confidence            67777888999999999999999999999999999995 49999999999999999999999999999999999999999


Q ss_pred             hhc---cHHHHHHH
Q psy6441         194 LAT---KPEVRILL  204 (464)
Q Consensus       194 ~A~---~~~i~~LL  204 (464)
                      +|+   +.+++++|
T Consensus       139 ~A~~~g~~eiv~lL  152 (153)
T d1awcb_         139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHhC
Confidence            996   67899988

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.6e-20  Score=180.92  Aligned_cols=78  Identities=13%  Similarity=-0.058  Sum_probs=60.4

Q ss_pred             CCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCH-------HHHHHHHHCCCCcccccCCCCC
Q psy6441          84 MPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDF-------EAVCELVSKGIDINAQHDMNGW  156 (464)
Q Consensus        84 ~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~-------eiVk~LL~~Gadvn~~dd~~G~  156 (464)
                      |.+|+||||+||..|+.++|++|++. |++++.+|..|+||||+||..++.       +++++|.   ..++..| ..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d-~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILED-SMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEEC-TTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcc-cccC
Confidence            57899999999999999999999999 999999999999999999987652       3333332   2344443 3666


Q ss_pred             cHHHHHHHcC
Q psy6441         157 TALHWAAKRG  166 (464)
Q Consensus       157 TpLH~Aa~~G  166 (464)
                      ||||+|+..+
T Consensus       179 t~lh~~~~~~  188 (301)
T d1sw6a_         179 TILHHIIITS  188 (301)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            7777666543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.1e-19  Score=154.25  Aligned_cols=105  Identities=27%  Similarity=0.311  Sum_probs=92.5

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cH
Q psy6441         122 EEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KP  198 (464)
Q Consensus       122 ~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~  198 (464)
                      .|||+||++.|+.++|++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+   +.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc-cccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            5899999999999999999999999999965 9999999999999999999999999999999999999999997   45


Q ss_pred             HHHHHHhCCCCCcccCCCCCCCcccccCC
Q psy6441         199 EVRILLGGEPGVTINTADLPIVPNYIKNE  227 (464)
Q Consensus       199 ~i~~LL~~~~~~~~~~~~~~~tpl~laa~  227 (464)
                      +++++|...+......+..|.||++++..
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            78887755443335567788899988754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=4.1e-19  Score=161.62  Aligned_cols=153  Identities=25%  Similarity=0.258  Sum_probs=130.6

Q ss_pred             cCCCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCC-----------------------------
Q psy6441          83 QMPDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGD-----------------------------  133 (464)
Q Consensus        83 ~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~-----------------------------  133 (464)
                      .+.+|.||||+||..|+.+++++|+.. |++++.++..+.++++.++..++                             
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            356899999999999999999999999 99999999999999888776643                             


Q ss_pred             -----HHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         134 -----FEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       134 -----~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                           ....+.|...+++++.++ ..|+||||+|+..|..++++.|+.++++++.+|..|.||||+|+   +.+++++|.
T Consensus        98 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADADINAAD-NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccccccC-CCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH
Confidence                 334556778899999885 49999999999999999999999999999999999999999996   567777774


Q ss_pred             CCCCCcccCCCCCCCcccccCCCCcHHHHHHH
Q psy6441         206 GEPGVTINTADLPIVPNYIKNEPLDPRVNDYQ  237 (464)
Q Consensus       206 ~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l  237 (464)
                      ..+......+..+.||+++|+..++..++++|
T Consensus       177 ~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         177 DNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            43322345567889999999999999998865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.77  E-value=8.5e-21  Score=189.82  Aligned_cols=149  Identities=11%  Similarity=-0.029  Sum_probs=115.3

Q ss_pred             HHhcCCCCCcchhhhhhcCChhhhh---cchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccC-CCC
Q psy6441          80 VLSQMPDGHGSIVNGMENTHLNSAR---LPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHD-MNG  155 (464)
Q Consensus        80 ll~~~~~g~TpLh~Aa~~G~~~iVk---~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd-~~G  155 (464)
                      +..++..|.||||+||+.||.++++   .|++. |++++.+|..|+||||+||+.||.++|++|++.|++++..+. .+|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            3455678999999999999987665   46777 999999999999999999999999999999999999988742 369


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCchhHhhc---cHHHHHHHhCCCCCcccCCCCCCCcccccCCCC
Q psy6441         156 WTALHWAAKRGQKDIVSYLLKHGADKS---LLTSKEETPLALAT---KPEVRILLGGEPGVTINTADLPIVPNYIKNEPL  229 (464)
Q Consensus       156 ~TpLH~Aa~~G~~eiv~lLL~~GAdin---~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~  229 (464)
                      +||||+||..||.++|++|++.|++..   ..+.+|.||+++|+   +.+++++|... +++.      .++...+...+
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~------~~~~~~~~~~~  234 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVML------AYAEIHEFEYG  234 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHH------HHHHHCTTTTT
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCc------chHHHHHHHcC
Confidence            999999999999999999999998753   44566778888885   57899988432 2221      14555566666


Q ss_pred             cHHHHHH
Q psy6441         230 DPRVNDY  236 (464)
Q Consensus       230 h~a~~~~  236 (464)
                      +.++...
T Consensus       235 ~~~~~~~  241 (346)
T d2ajaa1         235 EKYVNPF  241 (346)
T ss_dssp             TTTHHHH
T ss_pred             cHhhhHH
Confidence            6554443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.9e-19  Score=153.12  Aligned_cols=148  Identities=21%  Similarity=0.185  Sum_probs=127.4

Q ss_pred             hHHHHHHHhcCCCCHHHHHHhcCCchhhhccchhHHHHhhhHHHHHHHhcCCCCCcchhhhhhcCChhhhhcchhhcCCC
Q psy6441          34 SLLNICCKELNIDSPQTILKIRKLPNTIIRKDKDVARLTMFQEIELVLSQMPDGHGSIVNGMENTHLNSARLPFSVLGVS  113 (464)
Q Consensus        34 ~lL~i~c~~~~i~~~~~l~~~~~l~~~~~~~~~~~a~l~~~~ei~~ll~~~~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~  113 (464)
                      ++||+|+....++.++.+.+...-+                      ...+..|.||||+|+ .|+.+++++|++. |++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~----------------------n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~   58 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV----------------------NAQNGFGRTALQVMK-LGNPEIARRLLLR-GAN   58 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT----------------------TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc----------------------CccCCcccccccccc-ccccccccccccc-ccc
Confidence            5778888888887665554432111                      123578999999886 7999999999999 999


Q ss_pred             cccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCchh
Q psy6441         114 DMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGA-DKSLLTSKEETPL  192 (464)
Q Consensus       114 ~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GA-din~~D~~G~TPL  192 (464)
                      ++..+..|.++|+.++..++.+.+++|++.+.+++..+ ..|.+|||+|+..|+.+++++|+++|+ +++.+|..|+|||
T Consensus        59 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          59 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED-NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             cccccccCcccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccCCCCCCHH
Confidence            99999999999999999999999999999999999985 499999999999999999999999876 8999999999999


Q ss_pred             Hhhc---cHHHHHHHhC
Q psy6441         193 ALAT---KPEVRILLGG  206 (464)
Q Consensus       193 h~A~---~~~i~~LL~~  206 (464)
                      |+|+   +.+++++|..
T Consensus       138 ~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            9996   6788888843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1e-18  Score=150.48  Aligned_cols=117  Identities=24%  Similarity=0.231  Sum_probs=98.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHH
Q psy6441         123 EQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEETPLALAT---KPE  199 (464)
Q Consensus       123 TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~  199 (464)
                      +.|+.||..|+.++|++|+++|+++|.+|. +|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+   +.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            689999999999999999999999999965 9999999999999999999999999999999999999999996   667


Q ss_pred             HHHHHhC-CCCCcccCCCCCCCc--ccccCCCCcHHHHHHHHhC
Q psy6441         200 VRILLGG-EPGVTINTADLPIVP--NYIKNEPLDPRVNDYQVSN  240 (464)
Q Consensus       200 i~~LL~~-~~~~~~~~~~~~~tp--l~laa~~~h~a~~~~l~sn  240 (464)
                      ++++|.. +.+........+.|+  ...+...+|.+++++|.+.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888743 334443333445565  4455677888899988753

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.5e-18  Score=150.28  Aligned_cols=116  Identities=27%  Similarity=0.279  Sum_probs=92.1

Q ss_pred             CcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCC
Q psy6441          88 HGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQ  167 (464)
Q Consensus        88 ~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~  167 (464)
                      .++|+.+.........+.|..............+.++|++|+..+...+++.+++.|.+++.++. .|.||||+|+..|+
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGL  189 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTC
T ss_pred             ccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccc-cCcchHHHHHHcCC
Confidence            34444444444444444444331112223445788999999999999999999999999999955 99999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhHhhccHHHHHHH
Q psy6441         168 KDIVSYLLKHGADKSLLTSKEETPLALATKPEVRILL  204 (464)
Q Consensus       168 ~eiv~lLL~~GAdin~~D~~G~TPLh~A~~~~i~~LL  204 (464)
                      .+++++|+++|||++.+|.+|+||||+|+.....+++
T Consensus       190 ~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            9999999999999999999999999999987777776

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.1e-18  Score=153.71  Aligned_cols=95  Identities=12%  Similarity=0.032  Sum_probs=88.4

Q ss_pred             CCCCCcchhhhhh---cCChhhhhcchhhcCCCcccccchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          84 MPDGHGSIVNGME---NTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        84 ~~~g~TpLh~Aa~---~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      +..|+||||+|++   .|+.++|++|++. |++++.+|..|+||||+||..|+.+++++|+++|++++.+|. .|+||||
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpL~  119 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLD  119 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccccccccccccccccccCccccccCC-CCCCHHH
Confidence            3578999999997   4778999999999 999999999999999999999999999999999999999955 9999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCC
Q psy6441         161 WAAKRGQKDIVSYLLKHGAD  180 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~~GAd  180 (464)
                      +|+..|+.+++++|++.++.
T Consensus       120 ~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         120 IAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999997654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.1e-18  Score=159.80  Aligned_cols=120  Identities=20%  Similarity=0.212  Sum_probs=107.0

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCcccccchhhhHHHHHHhc----CCHHHHHHHHHCCCCcccccCCCCCcHHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRVKYLEEQLREASCL----GDFEAVCELVSKGIDINAQHDMNGWTALH  160 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d~~G~TpLh~Aa~~----G~~eiVk~LL~~Gadvn~~dd~~G~TpLH  160 (464)
                      ..|.||||+|++.|+.+++++|+++.|++++..+..|.++++.+...    +...++++|+++|++++.++. .|+||||
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~-~g~t~L~  224 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLI  224 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC-CCCCccc
Confidence            57899999999999999999999888999999999998887765443    345799999999999999854 9999999


Q ss_pred             HHHHcCCHHHHHHHHH-CCCCCCCCCCCCCchhHhhc---cHHHHHHHh
Q psy6441         161 WAAKRGQKDIVSYLLK-HGADKSLLTSKEETPLALAT---KPEVRILLG  205 (464)
Q Consensus       161 ~Aa~~G~~eiv~lLL~-~GAdin~~D~~G~TPLh~A~---~~~i~~LL~  205 (464)
                      +|+..|+.+++++||+ .|++++.+|.+|.||||+|+   +.+++++|.
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998 49999999999999999996   678888873

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.6e-19  Score=149.57  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=101.2

Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-chhHhhc---
Q psy6441         121 LEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQKDIVSYLLKHGADKSLLTSKEE-TPLALAT---  196 (464)
Q Consensus       121 G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~eiv~lLL~~GAdin~~D~~G~-TPLh~A~---  196 (464)
                      +.++||+|+..|+.++|++|+++|+++|.++. .|+||||+|+ .|+.+++++|+++|++++.+|..|. ||||+|+   
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~-~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccc-cccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            45799999999999999999999999999965 9999999775 7999999999999999999998876 6999997   


Q ss_pred             cHHHHHHHhCCCCCcccCCCCCCCcccccCCCCcHHHHHHHHh
Q psy6441         197 KPEVRILLGGEPGVTINTADLPIVPNYIKNEPLDPRVNDYQVS  239 (464)
Q Consensus       197 ~~~i~~LL~~~~~~~~~~~~~~~tpl~laa~~~h~a~~~~l~s  239 (464)
                      +.+++++|...+......+..|.||+++|...++.++.++|++
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4578877754433334567788999999999999999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.8e-17  Score=152.88  Aligned_cols=218  Identities=19%  Similarity=0.121  Sum_probs=158.4

Q ss_pred             CCChHhHHHHHHHhcCCCCHHHHHHhcCCchhhh---ccchhHHHHhhhHHHH-HHHh-------cCCCCCcchhhhhhc
Q psy6441          29 ELTYYSLLNICCKELNIDSPQTILKIRKLPNTII---RKDKDVARLTMFQEIE-LVLS-------QMPDGHGSIVNGMEN   97 (464)
Q Consensus        29 ~l~~~~lL~i~c~~~~i~~~~~l~~~~~l~~~~~---~~~~~~a~l~~~~ei~-~ll~-------~~~~g~TpLh~Aa~~   97 (464)
                      +..+.++|+.|+.....+.++.+...........   ......+......+.. ..+.       .+..+.+++++|+..
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  115 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh
Confidence            3456788888888888776666555433221111   1122222222222221 1111       135788999999999


Q ss_pred             CChhhhhcchhhcCCCccc----------ccchhhhHHHHHHhcCCHHHHHHHHHC-CCCcccccCCCCCcHHHHHHHcC
Q psy6441          98 THLNSARLPFSVLGVSDMD----------RVKYLEEQLREASCLGDFEAVCELVSK-GIDINAQHDMNGWTALHWAAKRG  166 (464)
Q Consensus        98 G~~~iVk~LL~~~ga~~~~----------~d~~G~TpLh~Aa~~G~~eiVk~LL~~-Gadvn~~dd~~G~TpLH~Aa~~G  166 (464)
                      |+...+..++.. ..+++.          .+..|.||||+|+++|+.+++++|++. |++++..+. .|.++++.+...+
T Consensus       116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~-~~~~~~~~~~~~~  193 (285)
T d1wdya_         116 GKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSS  193 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCS
T ss_pred             cchhhhhhhhhh-cccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC-CCCcccccccccc
Confidence            999999888876 444432          224589999999999999999999976 899999955 8888887765543


Q ss_pred             ----CHHHHHHHHHCCCCCCCCCCCCCchhHhhc---cHHHHHHHhCCCCCc-ccCCCCCCCcccccCCCCcHHHHHHHH
Q psy6441         167 ----QKDIVSYLLKHGADKSLLTSKEETPLALAT---KPEVRILLGGEPGVT-INTADLPIVPNYIKNEPLDPRVNDYQV  238 (464)
Q Consensus       167 ----~~eiv~lLL~~GAdin~~D~~G~TPLh~A~---~~~i~~LL~~~~~~~-~~~~~~~~tpl~laa~~~h~a~~~~l~  238 (464)
                          ..+++++|+++|++++.+|..|.||||+|+   +.+++++|....+.+ ...+..|.||+++|+..++.+++++|+
T Consensus       194 ~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                457999999999999999999999999996   567777775433333 456678899999999999999999999


Q ss_pred             hCCCCCCCCC
Q psy6441         239 SNQNRTHQTN  248 (464)
Q Consensus       239 sn~~~~~~~~  248 (464)
                      ++++.+....
T Consensus       274 ~~GAd~n~~d  283 (285)
T d1wdya_         274 KRGASTDCGD  283 (285)
T ss_dssp             HHSSCSCCSS
T ss_pred             HCCCCCCccc
Confidence            9988876554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=4.4e-19  Score=177.22  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=84.6

Q ss_pred             CCCCcchhhhhhcCChhhhhcchhhcCCCccccc--chhhhHHHHHHhcCCHHHHHHHHHCCCCcc---cccCCCCCcHH
Q psy6441          85 PDGHGSIVNGMENTHLNSARLPFSVLGVSDMDRV--KYLEEQLREASCLGDFEAVCELVSKGIDIN---AQHDMNGWTAL  159 (464)
Q Consensus        85 ~~g~TpLh~Aa~~G~~~iVk~LL~~~ga~~~~~d--~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn---~~dd~~G~TpL  159 (464)
                      .+|+||||+||+.||.++|++|++. |++++..+  ..|+||||+||..||.++|++|++.|++..   .. +.+|.||+
T Consensus       124 ~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~~~~t~l  201 (346)
T d2ajaa1         124 AENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ-AENYYAFR  201 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH-HHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccc-cCCCcchh
Confidence            5678999999999999999999999 99998876  469999999999999999999999998753   33 23577888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC
Q psy6441         160 HWAAKRGQKDIVSYLLKHGADKS  182 (464)
Q Consensus       160 H~Aa~~G~~eiv~lLL~~GAdin  182 (464)
                      |+|+.+||.++|++|+++|++++
T Consensus       202 ~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         202 WAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             hHHhhcCHHHHHHHHHhCCCCcc
Confidence            88999999999999999987654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.3e-16  Score=152.36  Aligned_cols=142  Identities=14%  Similarity=-0.035  Sum_probs=109.3

Q ss_pred             CCCcccc-cchhhhHHHHHHhcCCHHHHHHHHHCCCCcccccCCCCCcHHHHHHHcCCH-------HHHHHHHHCCCCCC
Q psy6441         111 GVSDMDR-VKYLEEQLREASCLGDFEAVCELVSKGIDINAQHDMNGWTALHWAAKRGQK-------DIVSYLLKHGADKS  182 (464)
Q Consensus       111 ga~~~~~-d~~G~TpLh~Aa~~G~~eiVk~LL~~Gadvn~~dd~~G~TpLH~Aa~~G~~-------eiv~lLL~~GAdin  182 (464)
                      ++++|.. |..|+||||+||..|+.++|++|+++|++++.+|. .|+||||+||..++.       +++++|   +.+++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l---~~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYL---YPCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHH---GGGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc-ccccHHHHhhhcccchhhhhHHHHHHHH---hhhhh
Confidence            7788865 89999999999999999999999999999999965 899999999987753       344444   34577


Q ss_pred             CCCCCCCchhHhhccH---------------HHHHHH-hCCCCC------------------------------------
Q psy6441         183 LLTSKEETPLALATKP---------------EVRILL-GGEPGV------------------------------------  210 (464)
Q Consensus       183 ~~D~~G~TPLh~A~~~---------------~i~~LL-~~~~~~------------------------------------  210 (464)
                      .+|..|+||||+++..               .+..++ ......                                    
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            7899999999987411               122222 111110                                    


Q ss_pred             cccCCCCCCCcccccCCCCcHHHHHHHHhCCCCCCCCCCCCCCCCcc
Q psy6441         211 TINTADLPIVPNYIKNEPLDPRVNDYQVSNQNRTHQTNPVTANQNVV  257 (464)
Q Consensus       211 ~~~~~~~~~tpl~laa~~~h~a~~~~l~sn~~~~~~~~p~~~~~p~~  257 (464)
                      .+..+..|.||+|+|+..++..++++|++.++.+..+. ..|.+|.-
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n-~~G~Tpl~  297 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN-KSGLRPVD  297 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC-TTSCCGGG
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHH
Confidence            13346778999999999999999999999998888877 56776653