Psyllid ID: psy6442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN
Secondary Structure (PSIPRED)
ccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccccccccEEEEccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccEEEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccccEEEEEEccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
mcvdgkpmlrqgdtgdwigtfeghkgcvwgvdinkdaskaasgaadfqaknntrliscaedktvrlwdvsasaevqklefgavpnsleisrdgttitvTHGSCVTFLDANSLELikehkvpaqvhsaslllnserpifvcggedlkmykfdystgaeiesfkghfgpihcvkfspdgelyasgsedgtlrlwqtnvgktyGLWKCiegglnnslgldssghlnnVHEVIAN
Flexible Loop (DISEMBL)
mcvdgkpmlrqgdtGDWIGTFEGHKGCVWGVDINKDASKAASGaadfqaknntrliscaedKTVRLWDVSASaevqklefgavpnsleisrDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHsaslllnserpiFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSlgldssghlnnvhevian
Low Complexity Region (SEG)
MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINkdaskaasgaadFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN
Disordered region (IsUnstruct)
*************TGDWIGTFEGHKGCVWGVDINKDA********DFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGL***************
Disordered Region (DISOPRED)
MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN
Disordered Region (DISEMBL)
MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN
Disordered Region (DISPRO)
**VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q5ZL33	350	Serine-threonine kinase r	yes	N/A	0.874	0.577	0.437	3e-55
Q5XIG8	350	Serine-threonine kinase r	yes	N/A	0.874	0.577	0.437	1e-54
Q9Z1Z2	350	Serine-threonine kinase r	yes	N/A	0.874	0.577	0.437	1e-54
Q5E959	350	Serine-threonine kinase r	yes	N/A	0.874	0.577	0.434	6e-54
Q9Y3F4	350	Serine-threonine kinase r	yes	N/A	0.874	0.577	0.434	7e-54
Q54LT8	293	Serine-threonine kinase r	yes	N/A	0.818	0.645	0.332	6e-35
P49695	742	Probable serine/threonine	yes	N/A	0.744	0.231	0.293	1e-12
Q00808	1356	Vegetative incompatibilit	no	N/A	0.688	0.117	0.295	2e-12
B0XFT7	328	Eukaryotic translation in	N/A	N/A	0.593	0.417	0.284	4e-12
B4JB43	326	Eukaryotic translation in	N/A	N/A	0.571	0.404	0.324	4e-12

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/274 (43%), Positives = 148/274 (54%), Gaps = 72/274 (26%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD------------------------- 36
           C DGKPMLRQGDTGDWIGTF GHKG VWG  +NKD                         
Sbjct: 36  CKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELI 95

Query: 37  --ASKAASGAADFQAKNNTRLISCAEDKTVR----------------------------- 65
             A K    + DF   +N  L++  +DK +R                             
Sbjct: 96  TLAHKHIVKSVDFTQDSN-YLLTGGQDKLLRIYDLSKPEAEPDVVSGHTSGIKKALWSSD 154

Query: 66  -------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                        LWD S   EV+ L      +S+E   +G  + +T+G  + F  A +L
Sbjct: 155 DKQILSADDKTVRLWDRSTMTEVKALNVAMSVSSMEYVPEGQILVITYGKTIAFHSAETL 214

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           E IK  + PA ++SAS  L+ E+   V GGED K+YK+DY+TG E+ES+KGHFGPIHCV+
Sbjct: 215 EQIKSFEAPATINSAS--LHPEKECLVAGGEDFKLYKYDYNTGEELESYKGHFGPIHCVR 272

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct: 273 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCV 306

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.
Gallus gallus (taxid: 9031)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/274 (43%), Positives = 148/274 (54%), Gaps = 72/274 (26%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD------------------------- 36
           C DGKPMLRQGDTGDWIGTF GHKG VWG  +NKD                         
Sbjct: 36  CKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELM 95

Query: 37  --ASKAASGAADFQAKNNTRLISCAEDKTVR----------------------------- 65
             A K      DF   +N  L++  +DK +R                             
Sbjct: 96  TLAHKHIVKTVDFTQDSN-YLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSE 154

Query: 66  -------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                        LWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL
Sbjct: 155 DKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSL 214

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           E IK  + PA ++SAS  L+ E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+
Sbjct: 215 EPIKSFEAPATINSAS--LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVR 272

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct: 273 FSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/274 (43%), Positives = 148/274 (54%), Gaps = 72/274 (26%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD------------------------- 36
           C DGKPMLRQGDTGDWIGTF GHKG VWG  +NKD                         
Sbjct: 36  CKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELM 95

Query: 37  --ASKAASGAADFQAKNNTRLISCAEDKTVR----------------------------- 65
             A K      DF   +N  L++  +DK +R                             
Sbjct: 96  TLAHKHIVKTVDFTQDSN-YLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSD 154

Query: 66  -------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                        LWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL
Sbjct: 155 DKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSL 214

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           E IK  + PA ++SAS  L+ E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+
Sbjct: 215 EPIKSFEAPATINSAS--LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVR 272

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct: 273 FSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  210 bits (535), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 148/274 (54%), Gaps = 72/274 (26%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD------------------------- 36
           C DGKPMLRQGDTGDWIGTF GHKG VWG  +NKD                         
Sbjct: 36  CKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELM 95

Query: 37  --ASKAASGAADFQAKNNTRLISCAEDKTVR----------------------------- 65
             A K      DF   +N  L++  +DK +R                             
Sbjct: 96  TLAHKHIVKTVDFTQDSN-YLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSE 154

Query: 66  -------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                        LWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL
Sbjct: 155 DKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSL 214

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           + IK  + PA ++SAS  L+ E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+
Sbjct: 215 DPIKSFEAPATINSAS--LHPEKEFVVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVR 272

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct: 273 FSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Bos taurus (taxid: 9913)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 148/274 (54%), Gaps = 72/274 (26%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD------------------------- 36
           C DGKPMLRQGDTGDWIGTF GHKG VWG  +NKD                         
Sbjct: 36  CKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELM 95

Query: 37  --ASKAASGAADFQAKNNTRLISCAEDKTVR----------------------------- 65
             A K      DF   +N  L++  +DK +R                             
Sbjct: 96  TLAHKHIVKTVDFTQDSN-YLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSE 154

Query: 66  -------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                        LWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL
Sbjct: 155 DKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSL 214

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           + IK  + PA ++SAS  L+ E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+
Sbjct: 215 DPIKSFEAPATINSAS--LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVR 272

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct: 273 FSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 127/262 (48%), Gaps = 73/262 (27%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C+DG PMLR G+ GDWIGTFEGHKG VW    N  AS+A + +AD+  K           
Sbjct: 33  CLDGSPMLRNGENGDWIGTFEGHKGAVWSSRFNSTASQALTASADYTVKLWDTLNGSEIL 92

Query: 51  ---------------NNTRLISCAEDKTVR------------------------------ 65
                          NN+R+++   +K +R                              
Sbjct: 93  SIEHQSIVKTADFSNNNSRVVTGGSEKILRIFDLERPNDPLLQISGHTNTIKTATWSVHN 152

Query: 66  --------------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS 111
                         +WD+ +  +V      ++  S+E S+D   +  T G+ VTF DA S
Sbjct: 153 DDIVLSGGLDEVIRIWDLRSGTQVSLCAKSSI-TSMEFSKDRRFLVTTAGNEVTFWDAQS 211

Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV 171
              +K + +P  V+ ASL  ++ +  F+ GG D  ++ +D+STG EIE  KGH GP++C 
Sbjct: 212 FYPLKVYSLPFDVNCASLHPDNSK--FIAGGSDFWVHVYDFSTGNEIEVNKGHHGPVNCC 269

Query: 172 KFSPDGELYASGSEDGTLRLWQ 193
           +FSPDG  +ASGS DGT+RLW+
Sbjct: 270 RFSPDGASFASGSLDGTIRLWK 291

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Dictyostelium discoideum (taxid: 44689)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 81/191 (42%), Gaps = 19/191 (9%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT 63
           DG   L    TG      +GH   V+ V  + D S  ASG+                D T
Sbjct: 564 DGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGS---------------RDGT 608

Query: 64  VRLWDVSASAEVQKLEFGAVPN-SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA 122
           +RLWDV+   E   L+  A    SL  S DG+ +     S V   D  S E +  H    
Sbjct: 609 IRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEAL--HTFEG 666

Query: 123 QVHSA-SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYA 181
                 ++  + +  +   G +D  +  +D +   E  + +GH  P+H V F P+G   A
Sbjct: 667 HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLA 726

Query: 182 SGSEDGTLRLW 192
           S SEDGT+R+W
Sbjct: 727 SASEDGTIRIW 737

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 24/183 (13%)

Query: 20   TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
            T EGH G VW V  + D  + ASG+               +DKT+++WD ++    Q LE
Sbjct: 878  TLEGHGGSVWSVAFSPDRERVASGS---------------DDKTIKIWDAASGTCTQTLE 922

Query: 80   -FGAVPNSLEISRDGTTITV-THGSCVTFLDANS---LELIKEHKVPAQVHSASLLLNSE 134
              G    S+  S DG  +   +    +   DA S    + ++ H   + V S +   + +
Sbjct: 923  GHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHG--SSVLSVAFSPDGQ 980

Query: 135  RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
            R     G + +K++  D ++G   ++ +GH G +  V FSPDG+  ASGS+D T+++W T
Sbjct: 981  RVASGSGDKTIKIW--DTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDT 1038

Query: 195  NVG 197
              G
Sbjct: 1039 ASG 1041

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|B0XFT7|EIF3I_CULQU Eukaryotic translation initiation factor 3 subunit I OS=Culex quinquefasciatus GN=CPIJ018275 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 14/151 (9%)

Query: 55  LISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTT-ITVTHGSCVTFLDANSL 112
           +I+  E+ ++R+WD+  + E+  + +   V N +++S DGT  ++ +  +     D+ SL
Sbjct: 165 VITGHENGSIRIWDLRTAKELNSVNDHTGVINDMQLSADGTMLVSASKDTTAKLFDSESL 224

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA------------EIES 160
             +K +K    V+SA++    E  +   G E +++      +G             E   
Sbjct: 225 MCLKTYKTERPVNSAAISPIHEHVVLGGGQEAMEVTTTSTKSGKFDSRLFHLVYEEEFAR 284

Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
            KGHFGPI+ + F PDG+ YA+G EDG +R+
Sbjct: 285 VKGHFGPINSLAFHPDGKSYATGGEDGFVRV 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|B4JB43|EIF3I_DROGR Eukaryotic translation initiation factor 3 subunit I OS=Drosophila grimshawi GN=Trip1 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 25/157 (15%)

Query: 55  LISCAEDKTVRLWDVSASAEV--QKLEFGAVPNSLEISRDGTT-ITVTHGSCVTFLDANS 111
           +I+  ++  + +WDV    +V    ++  A  N +++S+DGT  +T +  +     DA S
Sbjct: 162 IITGHDNGNIAIWDVRKGQKVVDSGVDHAAGINDMQLSKDGTMFVTASKDNTAKLFDAES 221

Query: 112 LELIKEHKVPAQVHSASLLLNSERPIF----VCGGED--------LKMYKFDYS-----T 154
           L  +K +K    V+SA++      PIF    + GG+D         K  KFD        
Sbjct: 222 LMCLKTYKTERPVNSAAI-----SPIFDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIY 276

Query: 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
             E    KGHFGPI+ + F PDG+ YASG EDG +R+
Sbjct: 277 EEEFARLKGHFGPINSLAFHPDGKSYASGGEDGFVRV 313

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
156549522	329	PREDICTED: serine-threonine kinase recep	0.969	0.680	0.494	2e-71
307195163	330	Serine-threonine kinase receptor-associa	0.965	0.675	0.485	1e-70
91089487	327	PREDICTED: similar to serine-threonine k	0.930	0.657	0.503	3e-70
350407099	330	PREDICTED: serine-threonine kinase recep	0.974	0.681	0.481	8e-70
340729402	330	PREDICTED: serine-threonine kinase recep	0.974	0.681	0.478	2e-69
442760889	343	Putative serine/threonine kinase recepto	0.883	0.594	0.505	3e-69
332026419	330	Serine-threonine kinase receptor-associa	0.974	0.681	0.478	1e-68
322798692	328	hypothetical protein SINV_00798 [Solenop	0.965	0.679	0.476	5e-68
242008905	320	serine-threonine kinase receptor-associa	0.900	0.65	0.494	3e-67
289741225	327	serine/threonine kinase receptor-associa	0.952	0.672	0.486	1e-66

>gi|156549522|ref|XP_001600320.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Nasonia vitripennis]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/299 (49%), Positives = 180/299 (60%), Gaps = 75/299 (25%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N +A+KAA+GAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNSEATKAATGAADFNAKVWDAVRGEELH 96

Query: 51  --NNTRLISCAE-------------DKTVRLWDV-------------------------- 69
              +  ++ C E             +K VR++D+                          
Sbjct: 97  SFQHNHIVKCVEFSKESEYLATGSNEKLVRIFDLNKPEADPQVFSGHTSGIRHATFFDND 156

Query: 70  -----------------SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                            S+  EV+KLEF A+P S+E+S+DG  IT TH + VTF D+  L
Sbjct: 157 KLLITCADDKTLRVWDRSSGLEVKKLEFPAIPRSMELSKDGKIITTTHSNIVTFWDSKEL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             ++E  VP QV+SAS  L+ +  IFVCGGEDLKMYKF Y+TG EIESFKGHFGPIHCV+
Sbjct: 217 TKLREFTVPTQVNSAS--LHPDNSIFVCGGEDLKMYKFHYTTGVEIESFKGHFGPIHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN 231
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+C+E         +++  +NN  EV AN
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWRCVE----QPSAQENTSIINNKQEVTAN 329

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195163|gb|EFN77156.1| Serine-threonine kinase receptor-associated protein [Harpegnathos saltator]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/301 (48%), Positives = 183/301 (60%), Gaps = 78/301 (25%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N  A++AA+GAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNPQATRAATGAADFNAKVWDAIKGEEVH 96

Query: 51  ---------------NNTRLISCAEDKTVRLWDV-------------------------- 69
                          ++  L + + +K VR++D+                          
Sbjct: 97  SFQHNHIVKSVNFSTDSNNLCTASNEKLVRIYDLNKPEEAPQIFSGHTSGIRHVTFFDNN 156

Query: 70  -----------------SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                            ++  EV++L+F A+P+S+E+S+DG  IT TH + VTF ++  L
Sbjct: 157 SALVTCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGKIITTTHSNIVTFWNSKEL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             IKE  VP QV+SAS  L+ +  IFVCGGEDLKMYKFDYSTGAEIESFKGHFGP+HCV+
Sbjct: 217 TKIKEFTVPTQVNSAS--LHPDCSIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPVHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE--GGLNNSLGLDSSGHLNNVHEVIA 230
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+C+E    +  ++ +     +NN  EV A
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWRCVEQTPAIQENIAV-----INNKQEVPA 329

Query: 231 N 231
           N
Sbjct: 330 N 330

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089487|ref|XP_969569.1| PREDICTED: similar to serine-threonine kinase receptor-associated protein [Tribolium castaneum] gi|270012578|gb|EFA09026.1| hypothetical protein TcasGA2_TC006736 [Tribolium castaneum]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/286 (50%), Positives = 180/286 (62%), Gaps = 71/286 (24%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHK-----------------------GCVW--------- 29
           C DGKPMLRQGDTGDWIGTFEGHK                       G VW         
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNKDATKAASGAADFTGKVWDANSGEELH 96

Query: 30  ---------GVDINKDASKAASGA-----------------ADFQA-----------KNN 52
                     V+ +KD++  A+G+                  +F             +N+
Sbjct: 97  SFQHKHIVKSVNFSKDSALLATGSNEKIVRIFDLNKPEAKPEEFTGHTSGIRHVIFFRND 156

Query: 53  TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
           T L+SCA+DKT+R+WD S+  EVQK++F ++PNSLE+SRDGT +TVTH + VTFLD+ SL
Sbjct: 157 THLVSCADDKTLRVWDRSSGKEVQKMDFPSIPNSLEVSRDGTVLTVTHSNHVTFLDSESL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             I+E  VP  V+SASL  + ++ IFV GG+DLK+YKFDY+TG EIESFKGHFGP+HCVK
Sbjct: 217 NKIREFSVPTTVNSASL--HPDKTIFVAGGDDLKVYKFDYTTGNEIESFKGHFGPVHCVK 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS 218
           FSPDGELYASGSEDGTLRLWQT +GKTYGLWKC++G   N+  + S
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTTIGKTYGLWKCVDGPQINNDAITS 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407099|ref|XP_003487985.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus impatiens]

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 181/299 (60%), Gaps = 74/299 (24%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N  A++AASGAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNPRATRAASGAADFNAKVWDAIKGEEIH 96

Query: 51  ---------------NNTRLISCAEDKTVRLWDVS------------------------- 70
                          ++  L + + +K VR++D++                         
Sbjct: 97  SFQHKHIVKSVNFSIDSNYLCTGSNEKLVRIYDLNKPDAAPQVFSGHKSGIRHVTFFNND 156

Query: 71  ------------------ASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                             +  EV++L+F A+PNS+E+SRDG  IT TH + VTF ++  L
Sbjct: 157 TALITCGDDKTLRVWDRKSGQEVRRLDFPAIPNSMEVSRDGNIITTTHSNIVTFWNSREL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             ++E+  P Q++SAS  L+ +  IFVCGGEDLKMYKFDY+TG EIESFKGHFGP+HCV+
Sbjct: 217 TKLREYTAPTQMNSAS--LHPDCSIFVCGGEDLKMYKFDYATGTEIESFKGHFGPVHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN 231
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+CIE         +++  LNN  EV A+
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWRCIE---QTPAIQENTAVLNNKQEVPAS 330

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729402|ref|XP_003402993.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus terrestris]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/299 (47%), Positives = 181/299 (60%), Gaps = 74/299 (24%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N  A++AASGAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNPRATRAASGAADFNAKVWDAIKGEEIH 96

Query: 51  ---------------NNTRLISCAEDKTVRLWDVS------------------------- 70
                          ++  L + + +K VR++D++                         
Sbjct: 97  SFQHKHIVKSVNFSIDSNYLCTGSNEKLVRIYDLNKPDATPQVFSGHKNGIRHVTFFNND 156

Query: 71  ------------------ASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                             +  EV++L+F A+PNS+E+SRDG  IT TH + VTF ++  L
Sbjct: 157 TALITCGDDKTLRVWDRKSGQEVRRLDFPAIPNSMEVSRDGNIITTTHSNIVTFWNSREL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             ++E+  P Q++SAS  L+ +  IFVCGGEDLKMYKFDY+TG EIESFKGHFGP+HCV+
Sbjct: 217 TKLREYTAPTQMNSAS--LHPDCSIFVCGGEDLKMYKFDYATGTEIESFKGHFGPVHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN 231
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+CIE         +++  +NN  EV A+
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWRCIE---QTPAIQENTAVVNNKQEVPAS 330

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442760889|gb|JAA72603.1| Putative serine/threonine kinase receptor-associated protein, partial [Ixodes ricinus]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/275 (50%), Positives = 167/275 (60%), Gaps = 71/275 (25%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTF GHKG VWGV +NKDAS+AA+GAADF AK           
Sbjct: 34  CKDGKPMLRQGDTGDWIGTFVGHKGAVWGVALNKDASRAATGAADFTAKLWNAVAGEELH 93

Query: 51  ---------------NNTRLISCAEDKTVRL----------------------------- 66
                             RL++ + DKT+R+                             
Sbjct: 94  TFPPPHIVRCVDFDAEGVRLLTGSNDKTIRVFDINKEDAAPTMLKGHTSAIKKVLFLFDD 153

Query: 67  --------------WDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                         WD  + +EV KLE  + P+ LEI+ DG+ + VTHG  V+     + 
Sbjct: 154 KRIVSASDDKTVRFWDYVSGSEVAKLELSSAPSDLEITVDGSMLLVTHGHTVSTWSTETF 213

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           E +KE KVP QV+SASLL   ++ +FVCGGED KMYKF+Y TGAE+ESFKGHFGP+HCV+
Sbjct: 214 EKVKEFKVPNQVNSASLL--PDKSVFVCGGEDFKMYKFEYETGAELESFKGHFGPVHCVR 271

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE 207
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC++
Sbjct: 272 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCMQ 306

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026419|gb|EGI66547.1| Serine-threonine kinase receptor-associated protein [Acromyrmex echinatior]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/299 (47%), Positives = 181/299 (60%), Gaps = 74/299 (24%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N  A++AA+GAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNPQATRAATGAADFNAKVWDAIKGEEVH 96

Query: 51  ---------------NNTRLISCAEDKTVRLWDV-------------------------- 69
                          ++  L + + +K VR++D+                          
Sbjct: 97  SFQHNHIVKSVNFSTDSNHLCTGSNEKLVRIYDLNKPEAAPQIFSGHASGIRHVTFFDNN 156

Query: 70  -----------------SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                            ++  EV++L+F A+P+S+E+S+DG  IT TH + VTF ++  L
Sbjct: 157 SALITCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGNIITTTHSNIVTFWNSKEL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             IKE  VP QV+SAS  L+ +  IFVCGGED KMYKFDY+TGAE+ESFKGHFGP+HCV+
Sbjct: 217 TKIKEFMVPTQVNSAS--LHPDCTIFVCGGEDFKMYKFDYNTGAELESFKGHFGPVHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIAN 231
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+CIE         +++  +NN  EV A+
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTIVGKTYGLWRCIE---QTPAIQENTAVINNKQEVPAS 330

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798692|gb|EFZ20290.1| hypothetical protein SINV_00798 [Solenopsis invicta]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 142/298 (47%), Positives = 178/298 (59%), Gaps = 75/298 (25%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DGKPMLRQGDTGDWIGTFEGHKG VWGV +N  A++AA+GAADF AK           
Sbjct: 37  CKDGKPMLRQGDTGDWIGTFEGHKGAVWGVALNPQATRAATGAADFNAKVWDAITGEEVH 96

Query: 51  ---------------NNTRLISCAEDKTVRLWDV-------------------------- 69
                          ++  L + + +K VR++D+                          
Sbjct: 97  SFQHNHIVKSVNFSTDSNHLCTGSNEKLVRIYDLNKPEATPQIFSGHTSGIRHVTFFDNN 156

Query: 70  -----------------SASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                            ++  EV++L+F A+P+S+E+S+DG  I  TH + VTF D+  L
Sbjct: 157 SALITCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGNIIITTHSNIVTFWDSKEL 216

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
             IKE  VP QV+S S  L+ +  IFVCGGED KMYKFDY+TGAE+ESFKGHFGP+HCV+
Sbjct: 217 TKIKECTVPTQVNSTS--LHPDCTIFVCGGEDFKMYKFDYNTGAELESFKGHFGPVHCVR 274

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHEVIA 230
           FSPDGELYASGSEDGTLRLWQT VGKTYGLW+CIE     +  +  +  +NN  EV A
Sbjct: 275 FSPDGELYASGSEDGTLRLWQTVVGKTYGLWRCIE----QTPTIPENAVINNKQEVPA 328

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008905|ref|XP_002425236.1| serine-threonine kinase receptor-associated protein, putative [Pediculus humanus corporis] gi|212508970|gb|EEB12498.1| serine-threonine kinase receptor-associated protein, putative [Pediculus humanus corporis]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 135/273 (49%), Positives = 168/273 (61%), Gaps = 65/273 (23%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DG+PMLRQGDTGDWIGTF GHKG VW V +N +A++AA+G+AD  AK           
Sbjct: 37  CKDGQPMLRQGDTGDWIGTFMGHKGAVWSVTLNANATRAATGSADSHAKLWDAITGEELH 96

Query: 51  ---------------NNTRLISCAEDKTVR------------------------------ 65
                          +++ L++ + +K +R                              
Sbjct: 97  SFQHNRIVKGVAFSQDSSLLVTGSTEKLIRIFDINKPESRHTGAIKDVTFLEDNLIVSIA 156

Query: 66  ------LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN-SLELIKEH 118
                 +WD       Q+L     PNS+EIS+DGT IT++HG  VTFL  +  L L++E 
Sbjct: 157 QDQTMKIWDRRTGTSSQQLTLATSPNSMEISKDGTIITISHGCSVTFLKKSYGLSLVREV 216

Query: 119 KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE 178
           K+P QV+SAS  L+ ++ IFVCGGEDLKMYKFDY+TG EIESFKGHFGP+HCVKFSPDGE
Sbjct: 217 KIPTQVNSAS--LHPDKSIFVCGGEDLKMYKFDYTTGCEIESFKGHFGPVHCVKFSPDGE 274

Query: 179 LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLN 211
           LYASGSEDGTLRLWQT VGKTYGLWKC++   N
Sbjct: 275 LYASGSEDGTLRLWQTTVGKTYGLWKCLDSSEN 307

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741225|gb|ADD19360.1| serine/threonine kinase receptor-associated protein [Glossina morsitans morsitans]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/292 (48%), Positives = 172/292 (58%), Gaps = 72/292 (24%)

Query: 2   CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------- 50
           C DG PMLRQGDTGDW+GTFEGHKG VWGV +NK+A+ AASGAADF  K           
Sbjct: 38  CKDGSPMLRQGDTGDWVGTFEGHKGAVWGVALNKNATLAASGAADFTGKVWNAVTGAEIH 97

Query: 51  ---------------NNTRLISCAEDKTVRLWDVSASA---------------------- 73
                          N+  +++ + +K VR++++                          
Sbjct: 98  SFQHKHIVKSVAFDTNSENIVTGSNEKLVRVFNLEQPQAEPEMYTGHGGNIKQALFCRDD 157

Query: 74  ---------------------EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
                                E+Q+L F   PNSLEIS D   +TV+HGS ++F + ++L
Sbjct: 158 KCIMSAAEDKTVRLWDRLTGNEIQRLTFPNNPNSLEISADSHILTVSHGSSISFWEVDTL 217

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           + +KE KVP  V SAS  L+ ++ +FVCGGED KMYKFDY TG EIESFKGHFGP+H VK
Sbjct: 218 KKLKEVKVPTNVSSAS--LHPDKHVFVCGGEDFKMYKFDYITGNEIESFKGHFGPVHSVK 275

Query: 173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG-LNNSLGLDSSGHLN 223
           FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC E G LNNSL      H N
Sbjct: 276 FSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCTEPGELNNSLNSPREVHAN 327

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.683	0.481	0.664	1.6e-54
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.666	0.468	0.576	6.7e-49
UNIPROTKB|Q5ZL33	350	STRAP "Serine-threonine kinase	0.666	0.44	0.570	4.8e-46
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.666	0.44	0.570	1e-45
RGD|1311114	350	Strap "serine/threonine kinase	0.645	0.425	0.589	1.3e-45
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.645	0.425	0.582	2.7e-45
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.645	0.425	0.582	2.7e-45
UNIPROTKB|B4DNJ6	363	STRAP "Serine-threonine kinase	0.645	0.410	0.582	2.7e-45
UNIPROTKB|I3LNC4	363	STRAP "Uncharacterized protein	0.645	0.410	0.582	2.7e-45
UNIPROTKB|B0AZV0	256	STRAP "cDNA, FLJ79540, highly	0.645	0.582	0.582	2.7e-45

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 107/161 (66%), Positives = 127/161 (78%)

Query:    55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
             +IS AEDKTVRLWD     EVQ+L+F + PNSLEIS D   +T++HGS ++F + ++L+ 
Sbjct:   161 IISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNHILTISHGSSISFWEIDTLKK 220

Query:   115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
             +KE KVP  V SASL  + ++ +FVCGGED KMYKFDY TG EIESFKGHFGP+H VKFS
Sbjct:   221 LKEVKVPTNVASASL--HPDKHVFVCGGEDFKMYKFDYITGNEIESFKGHFGPVHSVKFS 278

Query:   175 PDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE-GGLNNSL 214
             PDGELYASGSEDGTLRLWQT VGKTYGLWKC E   L NS+
Sbjct:   279 PDGELYASGSEDGTLRLWQTTVGKTYGLWKCTEPADLGNSI 319

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 90/156 (57%), Positives = 121/156 (77%)

Query:    51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
             N+ +++S A+DKT+RLWD + +  V+ L F A  +S+E   DG T+ +T+G  + F +A+
Sbjct:   154 NDQQILSAADDKTIRLWDKNTNEAVKTLSFDASVSSMEYIPDGETLVITYGRTIAFYNAH 213

Query:   111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
             SL+LIK    PA +HSASL  + ++  FV GG+D K+YK+DY+T  E+ES+KGHFGP+HC
Sbjct:   214 SLDLIKTVDAPASIHSASL--HPDKDFFVAGGDDFKLYKYDYTTKEEMESYKGHFGPVHC 271

Query:   171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             V+FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   272 VRFSPDGELYASGSEDGTLRLWQTAVGKTYGLWKCV 307

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q5ZL33 STRAP "Serine-threonine kinase receptor-associated protein" [Gallus gallus (taxid:9031)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 89/156 (57%), Positives = 114/156 (73%)

Query:    51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
             ++ + I  A+DKTVRLWD S   EV+ L      +S+E   +G  + +T+G  + F  A 
Sbjct:   153 SDDKQILSADDKTVRLWDRSTMTEVKALNVAMSVSSMEYVPEGQILVITYGKTIAFHSAE 212

Query:   111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
             +LE IK  + PA ++SASL  + E+   V GGED K+YK+DY+TG E+ES+KGHFGPIHC
Sbjct:   213 TLEQIKSFEAPATINSASL--HPEKECLVAGGEDFKLYKYDYNTGEELESYKGHFGPIHC 270

Query:   171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             V+FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   271 VRFSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCV 306

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 89/156 (57%), Positives = 115/156 (73%)

Query:    51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
             ++ + I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A 
Sbjct:   153 SDDKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAV 212

Query:   111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
             SLE IK  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHC
Sbjct:   213 SLEPIKSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHC 270

Query:   171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             V+FSPDGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   271 VRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

RGD|1311114 Strap "serine/threonine kinase receptor associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 89/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SLE I
Sbjct:   158 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPI 217

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   218 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 275

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   276 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030054 "cell junction" evidence=ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL+ I
Sbjct:   158 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPI 217

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   218 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 275

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   276 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL+ I
Sbjct:   158 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPI 217

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   218 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 275

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   276 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 306

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|B4DNJ6 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL+ I
Sbjct:   171 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPI 230

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   231 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 288

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   289 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 319

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|I3LNC4 STRAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL+ I
Sbjct:   171 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPI 230

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   231 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 288

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   289 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 319

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|B0AZV0 STRAP "cDNA, FLJ79540, highly similar to Serine-threonine kinase receptor-associatedprotein" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/151 (58%), Positives = 112/151 (74%)

Query:    56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI 115
             I  A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+G  + F  A SL+ I
Sbjct:    64 ILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPI 123

Query:   116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP 175
             K  + PA ++SASL  + E+   V GGED K+YK+DY++G E+ES+KGHFGPIHCV+FSP
Sbjct:   124 KSFEAPATINSASL--HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSP 181

Query:   176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
             DGELYASGSEDGTLRLWQT VGKTYGLWKC+
Sbjct:   182 DGELYASGSEDGTLRLWQTVVGKTYGLWKCV 212

GO:0016301 "kinase activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54LT8	STRAP_DICDI	No assigned EC number	0.3320	0.8181	0.6450	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	231
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-11
smart00320	40	smart00320, WD40, WD40 repeats	9e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 38/214 (17%)

Query: 13  DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------- 50
           +TG+ + T  GH   V  V  + D    +S + D   K                      
Sbjct: 81  ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140

Query: 51  -----NNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTT-ITVTHGS 102
                + T + S ++D T++LWD+     V  L    G V NS+  S DG   ++ +   
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV-NSVAFSPDGEKLLSSSSDG 199

Query: 103 CVTFLDANSLELIKEHKVPAQVHSA---SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE 159
            +   D ++ + +       + H     S+  + +  +   G ED  +  +D  TG  ++
Sbjct: 200 TIKLWDLSTGKCLGTL----RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
           +  GH   +  + +SPDG+  ASGS DGT+R+W 
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 38/218 (17%)

Query: 18  IGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------- 50
             T +GH G V  V  + D    A+G+ D   K                           
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTHG-SCVTFL 107
           + T L S + DKT+RLWD+     V+ L      V +S+  S DG  ++ +     +   
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV-SSVAFSPDGRILSSSSRDKTIKVW 120

Query: 108 DANSLELIKEHKVPAQVHSA---SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164
           D  + + +       + H+    S+  + +        +D  +  +D  TG  + +  GH
Sbjct: 121 DVETGKCLTT----LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL 202
            G ++ V FSPDGE   S S DGT++LW  + GK  G 
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.1 bits (211), Expect = 9e-20
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 41/229 (17%)

Query: 13  DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------- 50
           +TG+ + T +GH G V  V  + D +  ASG++D   +                      
Sbjct: 39  ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS 98

Query: 51  ----NNTRLI-SCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVTHG-S 102
                + R++ S + DKT+++WDV     +  L      V NS+  S DGT +  +    
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NSVAFSPDGTFVASSSQDG 157

Query: 103 CVTFLDANSLELIKE---HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE 159
            +   D  + + +     H    +V+S +   + E+   +    D  +  +D STG  + 
Sbjct: 158 TIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLG 213

Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG 208
           + +GH   ++ V FSPDG L ASGSEDGT+R+W    G+     + + G
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLSG 259

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.1 bits (170), Expect = 6e-14
 Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 19/191 (9%)

Query: 18  IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77
           I T EGH   V  +  + D                      + D T++LWD+     +  
Sbjct: 148 IRTLEGHSESVTSLAFSPD--------------GKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 78  LEF-GAVPNSLEISRDGTTITVTHGS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSE 134
           L       +SL  S DG  +  +  S   +   D ++ +L++   +     S     + +
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPD 252

Query: 135 RPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
             +   G  D  +  +D  + +  + +  GH   +  V FSPDG+L ASGS DGT+RLW 
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Query: 194 TNVGKTYGLWK 204
              GK      
Sbjct: 313 LETGKLLSSLT 323

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 6e-13
 Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 22/178 (12%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           T  GH   V  V  + D                  L S + D TVRLWD+     +  L 
Sbjct: 279 TLSGHSSSVLSVAFSPD---------------GKLLASGSSDGTVRLWDLETGKLLSSLT 323

Query: 80  F---GAVPNSLEISRDGTTITVTHGS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSE 134
                   +SL  S DG+ +         +   D  + + +K  +  + V S S   +  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Query: 135 RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
             +   G  D  +  +D STG+ + +  GH   +  + FSPDG+  ASGS D T+RLW
Sbjct: 384 --VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 19/207 (9%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT 63
           DG   L    TG  + T  GH   V  +  + D                  + S + D T
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD--------------GGLLIASGSSDGT 222

Query: 64  VRLWDVSASAEVQKLEFG-AVPNSLEISRDGTT-ITVTHGSCVTFLDANSLELIKEHKVP 121
           +RLWD+S    ++    G +       S DG+   + +    +   D  S   +      
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGEL 179
                 S+  + +  +   G  D  +  +D  TG  +   + KGH GP+  + FSPDG L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 180 YASG-SEDGTLRLWQTNVGKTYGLWKC 205
             SG S+DGT+RLW    GK     + 
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEG 369

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 24/188 (12%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS----AEV 75
              GH+  +  +  + D                  L+S + D T++LWD+         +
Sbjct: 60  LLRGHEDSITSIAFSPD---------------GELLLSGSSDGTIKLWDLDNGEKLIKSL 104

Query: 76  QKLEFGAVPNSLEISRDGTTITVTHGSC---VTFLD-ANSLELIKEHKVPAQVHSASLLL 131
           + L   +V      S DG +I +   S    V   D +   +LI+  +  ++  ++    
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLR 190
              + +      D  +  +D  TG  + +  GH  P+  + FSPDG L  ASGS DGT+R
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 191 LWQTNVGK 198
           LW  + GK
Sbjct: 225 LWDLSTGK 232

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
           +G  +++ KGH GP+  V FSPDG+  ASGS+DGT++LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
           G  + + KGH GP+  V FSPDG L ASGS+DGT+R+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 15/55 (27%)

Query: 14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD 68
          +G+ + T +GH G V  V  + D                  L S ++D T++LWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPD---------------GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 15/51 (29%)

Query: 18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD 68
          + T +GH G V  V  + D                  L S ++D TVR+WD
Sbjct: 4  LRTLKGHTGPVTSVAFSPD---------------GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200
            +GH   I  + FSPDGEL  SGS DGT++LW  + G+  
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL 100

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG0278|consensus	334		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		99.97
KOG0272|consensus	459		99.97
KOG0315|consensus	311		99.97
KOG0263|consensus	707		99.97
KOG0273|consensus	524		99.97
KOG0295|consensus	406		99.97
KOG0263|consensus	707		99.96
KOG0279|consensus	315		99.96
KOG0271|consensus	480		99.96
KOG0286|consensus	343		99.96
KOG0279|consensus	315		99.95
KOG0291|consensus	893		99.95
KOG0643|consensus	327		99.95
KOG0286|consensus	343		99.95
KOG0289|consensus	506		99.95
KOG0282|consensus	503		99.94
KOG0285|consensus	460		99.94
KOG0315|consensus	311		99.94
KOG0293|consensus	519		99.93
KOG0265|consensus	338		99.93
KOG0277|consensus	311		99.93
KOG0266|consensus	456		99.93
KOG0313|consensus	423		99.93
KOG0288|consensus	459		99.93
KOG0276|consensus	794		99.93
KOG0281|consensus	499		99.93
KOG0266|consensus	456		99.93
PTZ00420	568	coronin; Provisional	99.92
KOG0291|consensus	893		99.92
KOG0316|consensus	307		99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0285|consensus	460		99.92
KOG1446|consensus	311		99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0284|consensus	464		99.92
KOG1407|consensus	313		99.92
KOG0296|consensus	399		99.91
KOG0292|consensus	1202		99.91
KOG0318|consensus	603		99.91
PTZ00420	568	coronin; Provisional	99.9
KOG0316|consensus	307		99.9
KOG1332|consensus	299		99.9
KOG0282|consensus	503		99.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.9
KOG0645|consensus	312		99.9
KOG0265|consensus	338		99.9
KOG0284|consensus	464		99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0273|consensus	524		99.89
KOG0319|consensus	775		99.89
KOG0274|consensus	537		99.89
KOG0296|consensus	399		99.89
KOG0310|consensus	487		99.88
KOG0268|consensus	433		99.88
KOG0646|consensus	476		99.88
KOG0305|consensus	484		99.88
KOG0283|consensus	712		99.88
KOG1407|consensus	313		99.88
KOG0319|consensus	775		99.88
KOG0274|consensus	537		99.88
KOG0640|consensus	430		99.87
KOG0318|consensus	603		99.87
KOG0294|consensus	362		99.87
KOG0281|consensus	499		99.87
KOG0647|consensus	347		99.87
KOG0310|consensus	487		99.87
KOG0300|consensus	481		99.87
KOG0283|consensus	712		99.87
KOG0275|consensus	508		99.86
KOG0643|consensus	327		99.86
KOG2096|consensus	420		99.86
KOG0277|consensus	311		99.86
KOG0306|consensus	888		99.86
KOG0313|consensus	423		99.86
KOG1036|consensus	323		99.86
KOG0295|consensus	406		99.86
KOG0973|consensus	942		99.85
KOG0302|consensus	440		99.84
KOG0645|consensus	312		99.84
KOG0293|consensus	519		99.84
KOG0264|consensus	422		99.84
KOG0308|consensus	735		99.83
KOG0267|consensus	825		99.83
KOG0275|consensus	508		99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG0276|consensus	794		99.82
KOG0299|consensus	479		99.82
KOG0269|consensus	839		99.81
KOG0301|consensus	745		99.81
KOG0289|consensus	506		99.8
KOG0305|consensus	484		99.79
KOG0641|consensus	350		99.79
KOG0301|consensus	745		99.78
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.78
KOG0308|consensus	735		99.77
KOG0772|consensus	641		99.77
KOG4283|consensus	397		99.77
KOG0270|consensus	463		99.76
KOG0264|consensus	422		99.76
KOG0288|consensus	459		99.76
KOG0268|consensus	433		99.75
KOG0321|consensus	720		99.75
KOG2445|consensus	361		99.75
KOG0307|consensus	1049		99.74
KOG0639|consensus	705		99.74
KOG1273|consensus	405		99.74
KOG1539|consensus	910		99.74
KOG0973|consensus	942		99.73
KOG0292|consensus	1202		99.73
KOG4283|consensus	397		99.73
KOG1408|consensus	1080		99.72
KOG0278|consensus	334		99.72
KOG0639|consensus	705		99.72
KOG0270|consensus	463		99.71
KOG1446|consensus	311		99.71
KOG0306|consensus	888		99.7
KOG0267|consensus	825		99.7
KOG0640|consensus	430		99.7
KOG0300|consensus	481		99.7
KOG0303|consensus	472		99.69
KOG0642|consensus	577		99.68
KOG2106|consensus	626		99.68
KOG0647|consensus	347		99.68
KOG1274|consensus	933		99.67
KOG0294|consensus	362		99.67
KOG4378|consensus	673		99.66
KOG0772|consensus	641		99.66
KOG4328|consensus	498		99.65
KOG1539|consensus	910		99.65
KOG0650|consensus	733		99.65
KOG1274|consensus	933		99.65
KOG0299|consensus	479		99.64
KOG0269|consensus	839		99.64
KOG1188|consensus	376		99.63
KOG0302|consensus	440		99.62
KOG0641|consensus	350		99.62
KOG2110|consensus	391		99.62
KOG2055|consensus	514		99.62
KOG0646|consensus	476		99.62
KOG1538|consensus	1081		99.61
KOG1034|consensus	385		99.6
KOG0649|consensus	325		99.6
KOG2048|consensus	691		99.59
KOG0322|consensus	323		99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.59
KOG1524|consensus	737		99.58
KOG0303|consensus	472		99.58
KOG1408|consensus	1080		99.58
KOG0290|consensus	364		99.58
KOG4378|consensus	673		99.57
KOG1332|consensus	299		99.57
KOG2048|consensus	691		99.57
KOG1036|consensus	323		99.56
KOG2445|consensus	361		99.55
KOG0650|consensus	733		99.55
KOG2919|consensus	406		99.54
KOG0771|consensus	398		99.54
KOG2055|consensus	514		99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.53
KOG2111|consensus	346		99.51
KOG1007|consensus	370		99.5
KOG0649|consensus	325		99.5
KOG1034|consensus	385		99.49
KOG2919|consensus	406		99.49
KOG1063|consensus	764		99.48
KOG2096|consensus	420		99.46
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
KOG2110|consensus	391		99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.44
PRK11028	330	6-phosphogluconolactonase; Provisional	99.44
KOG4328|consensus	498		99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
KOG1063|consensus	764		99.43
KOG2106|consensus	626		99.43
KOG0307|consensus	1049		99.42
KOG2111|consensus	346		99.42
KOG0321|consensus	720		99.41
KOG1445|consensus	1012		99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
PRK04922	433	tolB translocation protein TolB; Provisional	99.39
KOG1963|consensus	792		99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
KOG1523|consensus	361		99.37
KOG0644|consensus	1113		99.37
COG2319	466	FOG: WD40 repeat [General function prediction only	99.35
KOG1007|consensus	370		99.35
KOG1009|consensus	434		99.35
KOG0771|consensus	398		99.34
PRK01742	429	tolB translocation protein TolB; Provisional	99.33
KOG1445|consensus	1012		99.33
PRK11028	330	6-phosphogluconolactonase; Provisional	99.33
KOG1310|consensus	758		99.31
KOG1240|consensus	1431		99.3
KOG3881|consensus	412		99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
KOG0642|consensus	577		99.28
KOG0322|consensus	323		99.27
PRK03629	429	tolB translocation protein TolB; Provisional	99.26
KOG1273|consensus	405		99.26
KOG1009|consensus	434		99.24
PRK05137	435	tolB translocation protein TolB; Provisional	99.22
KOG2321|consensus	703		99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
KOG2394|consensus	636		99.2
KOG1517|consensus	1387		99.19
KOG1272|consensus	545		99.18
KOG2139|consensus	445		99.18
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.17
KOG1517|consensus	1387		99.16
KOG1587|consensus	555		99.16
KOG4190|consensus	1034		99.15
KOG0290|consensus	364		99.15
PRK04922	433	tolB translocation protein TolB; Provisional	99.15
KOG1188|consensus	376		99.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.13
KOG0644|consensus	1113		99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.12
KOG4227|consensus	609		99.11
KOG0974|consensus	967		99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
KOG2139|consensus	445		99.06
KOG1334|consensus	559		99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
PRK02889	427	tolB translocation protein TolB; Provisional	99.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.97
KOG4497|consensus	447		98.96
KOG2321|consensus	703		98.9
KOG1240|consensus	1431		98.9
KOG1310|consensus	758		98.9
PRK00178	430	tolB translocation protein TolB; Provisional	98.88
KOG4227|consensus	609		98.87
KOG1524|consensus	737		98.86
KOG1963|consensus	792		98.84
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
KOG2315|consensus	566		98.82
KOG1538|consensus	1081		98.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.81
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
KOG4547|consensus	541		98.79
KOG3881|consensus	412		98.75
KOG4532|consensus	344		98.74
KOG4547|consensus	541		98.72
PRK01029	428	tolB translocation protein TolB; Provisional	98.71
KOG1272|consensus	545		98.71
KOG1587|consensus	555		98.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.7
KOG0280|consensus	339		98.69
KOG3914|consensus	390		98.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.69
KOG2394|consensus	636		98.68
KOG1064|consensus	2439		98.65
KOG0882|consensus	558		98.65
KOG1354|consensus	433		98.65
COG4946	668	Uncharacterized protein related to the periplasmic	98.63
KOG0280|consensus	339		98.6
KOG4497|consensus	447		98.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
KOG1334|consensus	559		98.58
KOG1523|consensus	361		98.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.51
PRK04043	419	tolB translocation protein TolB; Provisional	98.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.48
KOG1064|consensus	2439		98.46
KOG0974|consensus	967		98.46
KOG1409|consensus	404		98.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.4
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.38
KOG4714|consensus	319		98.36
KOG4190|consensus	1034		98.32
KOG1409|consensus	404		98.31
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.27
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.26
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.25
KOG2066|consensus	846		98.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.24
KOG2041|consensus	1189		98.21
KOG1275|consensus	1118		98.2
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.17
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.16
KOG3914|consensus	390		98.11
KOG4532|consensus	344		98.09
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.06
KOG2314|consensus	698		98.03
KOG2695|consensus	425		98.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.0
KOG2695|consensus	425		98.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.96
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.91
KOG2314|consensus	698		97.9
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.89
COG4946	668	Uncharacterized protein related to the periplasmic	97.88
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.87
KOG2315|consensus	566		97.77
PRK02888	635	nitrous-oxide reductase; Validated	97.7
KOG0309|consensus	1081		97.69
KOG0309|consensus	1081		97.67
KOG1354|consensus	433		97.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.63
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.48
KOG4714|consensus	319		97.41
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.4
KOG1275|consensus	1118		97.38
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.38
KOG1920|consensus	1265		97.34
KOG4640|consensus	665		97.28
PRK02888	635	nitrous-oxide reductase; Validated	97.25
KOG2114|consensus	933		97.23
KOG3617|consensus	1416		97.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.18
KOG1912|consensus	1062		97.15
KOG1645|consensus	463		97.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.12
KOG0882|consensus	558		97.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.06
COG3391	381	Uncharacterized conserved protein [Function unknow	97.06
KOG1920|consensus	1265		97.06
COG3391	381	Uncharacterized conserved protein [Function unknow	97.01
KOG1912|consensus	1062		96.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.81
KOG2066|consensus	846		96.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.73
KOG2041|consensus	1189		96.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.59
KOG1832|consensus	1516		96.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.35
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.33
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.26
KOG4649|consensus	354		96.25
KOG1832|consensus	1516		96.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.22
KOG3621|consensus	726		96.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.05
KOG2395|consensus	644		95.84
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.55
KOG4649|consensus	354		95.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.51
KOG1645|consensus	463		95.38
KOG2444|consensus	238		95.25
KOG3621|consensus	726		94.88
KOG2395|consensus	644		94.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.81
KOG2280|consensus	829		94.69
KOG2079|consensus	1206		94.63
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.61
KOG4640|consensus	665		94.59
KOG2114|consensus	933		94.51
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.07
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.4
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.14
KOG1897|consensus	1096		92.95
PHA02713	557	hypothetical protein; Provisional	92.89
PRK13616	591	lipoprotein LpqB; Provisional	92.56
KOG1008|consensus	783		92.49
KOG3617|consensus	1416		92.28
KOG4499|consensus	310		92.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.02
KOG1008|consensus	783		91.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	91.59
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.06
KOG2079|consensus	1206		90.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.16
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.94
PRK13616	591	lipoprotein LpqB; Provisional	89.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.26
COG5167	776	VID27 Protein involved in vacuole import and degra	89.12
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.84
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.83
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.45
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.03
KOG1898|consensus	1205		87.01
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.74
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.65
PHA03098	534	kelch-like protein; Provisional	86.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	86.05
COG5167	776	VID27 Protein involved in vacuole import and degra	85.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.82
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.72
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.35
KOG3616|consensus	1636		84.11
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.01
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.06
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.96
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.84
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	81.35
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	81.31
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	80.8
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	80.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.23

>KOG0278|consensus

Probab=100.00  E-value=6.3e-38  Score=236.10  Aligned_cols=207  Identities=63%  Similarity=1.114  Sum_probs=193.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      +|.||+.+|..++||++|.+|.||.|.||+..++.+..+.++++.||+..                              
T Consensus        35 a~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~  114 (334)
T KOG0278|consen   35 ASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNY  114 (334)
T ss_pred             eccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchh
Confidence            47899999999999999999999999999999999999999988876432                              


Q ss_pred             ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc
Q psy6442          51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR   91 (231)
Q Consensus        51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~   91 (231)
                                                             .+++++|++.|++||+||.++++.++++.++.+++++.+++
T Consensus       115 lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~  194 (334)
T KOG0278|consen  115 LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ  194 (334)
T ss_pred             hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc
Confidence                                                   56788998999999999999999999999999999999999


Q ss_pred             CCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeE
Q psy6442          92 DGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHC  170 (231)
Q Consensus        92 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~  170 (231)
                      +|..+.+++++.|.+||..+...++..+.|..+.+.++  +|+...+++|++|..++.||..+++.+..+ ++|.+||.|
T Consensus       195 dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL--~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc  272 (334)
T KOG0278|consen  195 DGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASL--HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC  272 (334)
T ss_pred             CCCEEEEecCceeEEeccccccceeeccCccccccccc--cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence            99999999999999999999999999999988887776  788889999999999999999999999887 899999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       171 v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      |.|+|||...||||+||+||||...-++.+.+|.+..++
T Consensus       273 VrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~e  311 (334)
T KOG0278|consen  273 VRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPE  311 (334)
T ss_pred             EEECCCCceeeccCCCceEEEEEecCCCchhhccccChh
Confidence            999999999999999999999999999999999876655

>KOG0271|consensus

Probab=100.00  E-value=4.3e-33  Score=220.67  Aligned_cols=205  Identities=27%  Similarity=0.353  Sum_probs=171.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      |+-|-+|||||.+|...+.+.+||...|.+++|+|||+.+++|+.|..+.                              
T Consensus       133 GsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h  212 (480)
T KOG0271|consen  133 GSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH  212 (480)
T ss_pred             cCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccc
Confidence            57899999999999999999999999999999999999999998875442                              


Q ss_pred             ---CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeE
Q psy6442          51 ---NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVH  125 (231)
Q Consensus        51 ---~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~  125 (231)
                         ...+|+|+|.||+|+|||+..+.++..+. +...++++.|-.++.....+.|++|++|+..++...++.+.+. -++
T Consensus       213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN  292 (480)
T KOG0271|consen  213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN  292 (480)
T ss_pred             cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence               45689999999999999999999988775 5678999999988876666789999999988876665554432 233


Q ss_pred             EEEEE---------ecC-------------------------CCCEEEEecCCCeEEEEeCCC-cceeeeccCCCCCeeE
Q psy6442         126 SASLL---------LNS-------------------------ERPIFVCGGEDLKMYKFDYST-GAEIESFKGHFGPIHC  170 (231)
Q Consensus       126 ~~~~~---------~~~-------------------------~~~~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~  170 (231)
                      .+.+.         +++                         .+..+++|++|.++.+|+... .+++..+.||...|+.
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~  372 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH  372 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence            22221         011                         233599999999999998754 4578889999999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       171 v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +.||||++++||+|-|++||+|+.++||....+++
T Consensus       373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             EEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence            99999999999999999999999999999877763

>KOG0272|consensus

Probab=99.97  E-value=3.4e-31  Score=211.98  Aligned_cols=207  Identities=20%  Similarity=0.209  Sum_probs=179.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCC--CceeEecccccccc---------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQAK---------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~--~~~~~s~~~d~~~~---------------------------~   51 (231)
                      ||-+|.+.||+..++..+++|.||++.|.++.|+|.  +..++|++.|..+.                           +
T Consensus       193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs  272 (459)
T KOG0272|consen  193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS  272 (459)
T ss_pred             eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence            467899999999999999999999999999999998  46889998886543                           7


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHSAS  128 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~  128 (231)
                      |++|+|++.|.|-++||++++..+...+ +...+.+++|.|||..++.+. |..-++||++++.++-....+. ++..  
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~--  350 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS--  350 (459)
T ss_pred             CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceee--
Confidence            8999999999999999999987654433 557899999999999887654 5677999999999877666543 4544  


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                      +.++|+|..+|+|+.|.++++||++...+++++.+|...|+.|.|+| .|.+|+||+.|++++||...+.++.+++.+++
T Consensus       351 V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  351 VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence            44599999999999999999999999999999999999999999999 68899999999999999999999888887766


Q ss_pred             Cc
Q psy6442         208 GG  209 (231)
Q Consensus       208 ~~  209 (231)
                      ++
T Consensus       431 ~k  432 (459)
T KOG0272|consen  431 GK  432 (459)
T ss_pred             cc
Confidence            65

>KOG0272|consensus

Probab=99.97  E-value=6.9e-31  Score=210.17  Aligned_cols=191  Identities=19%  Similarity=0.222  Sum_probs=169.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      |+.||+|++|+.++.+.|..|.||...|-.++|+|+|+.|+|++.|.+.+                           +|.
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS  316 (459)
T ss_pred             eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence            57899999999998899999999999999999999999999999885543                           788


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~  130 (231)
                      .++|||.|..-||||+++++++..+. +-.+|.+|+|+|+|..++.+ .|+++++||++....+..+..+. -+..+.+ 
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~-  395 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY-  395 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe-
Confidence            99999999999999999999988876 45789999999999998875 57899999998877766655443 2333344 


Q ss_pred             ecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         131 LNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       131 ~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                       .| .+.++++++.|.++++|...+.++++++.||.+.|.+++++||++.++|++.|+++|+|.
T Consensus       396 -~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 -SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             -cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence             44 788999999999999999999999999999999999999999999999999999999996

>KOG0315|consensus

Probab=99.97  E-value=1.6e-29  Score=190.60  Aligned_cols=220  Identities=19%  Similarity=0.253  Sum_probs=182.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccc---------c--c-----------------cCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF---------Q--A-----------------KNN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~---------~--~-----------------~~~   52 (231)
                      +|.|.++|+|.+.+|++.++.+--.+-|..+.+.|+++.|+.++..-         .  +                 .++
T Consensus        16 A~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg   95 (311)
T KOG0315|consen   16 AGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG   95 (311)
T ss_pred             ccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC
Confidence            47899999999999999999874455799999999999998875420         0  0                 178


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeec--cceeEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKV--PAQVHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~  129 (231)
                      ..++|+|.||++||||++...+.+.+++..+++++.++|++..++.+. ++.|++||+....+......  ...+..+. 
T Consensus        96 rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~-  174 (311)
T KOG0315|consen   96 RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT-  174 (311)
T ss_pred             eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE-
Confidence            889999999999999999998888899999999999999998877764 68999999987665544322  23444444 


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCc------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-Ce---
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTG------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG-KT---  199 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~-~~---  199 (231)
                       ..+++.+++.+...|+.++|++...      ++++.|+.|.+-+..+.+|||+.+||++|.|.+++||++.+. |.   
T Consensus       175 -v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~  253 (311)
T KOG0315|consen  175 -VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV  253 (311)
T ss_pred             -EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence             4899999999999999999998653      346678899999999999999999999999999999998776 21   


Q ss_pred             -----eeeeeccCCcccCCCCCCccccc
Q psy6442         200 -----YGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       200 -----~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                           -..|.++|...+.+|.-.+++|.
T Consensus       254 l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  254 LTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             eecCCceEEeeeeccCccEEEecCCCCc
Confidence                 14789999999999988777754

>KOG0263|consensus

Probab=99.97  E-value=1.5e-29  Score=215.71  Aligned_cols=201  Identities=25%  Similarity=0.415  Sum_probs=168.0

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FG   81 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~   81 (231)
                      .|-.++..|...+....+|-||+|+|+.+.|+|+               ...|+|||.|+++|+|.+.+..++-... +.
T Consensus       429 ad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd---------------~rfLlScSED~svRLWsl~t~s~~V~y~GH~  493 (707)
T KOG0263|consen  429 ADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD---------------RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL  493 (707)
T ss_pred             cchhhhhccccCCceeEEeecCCCceeeeeeccc---------------ccceeeccCCcceeeeecccceeEEEecCCC
Confidence            3444555565556667779999999999999997               5568999999999999999988875554 44


Q ss_pred             CcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee
Q psy6442          82 AVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE  159 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~  159 (231)
                      .++..|.|+|-|.+++. ++|.+-++|......+++.+-.+. .+.++.+  +|+..++++|+.|.++++||..+|..++
T Consensus       494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEE--CCcccccccCCCCceEEEEEcCCCcEEE
Confidence            67899999999998765 567788999988888777766553 5655555  9999999999999999999999999999


Q ss_pred             eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       160 ~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      .|.||+++|.+|+|||+|++||||++|+.|+|||+.+++.+.+..+. -+..++++|..+|.
T Consensus       572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGN  632 (707)
T ss_pred             EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCC
Confidence            99999999999999999999999999999999999999988777665 55566666666544

>KOG0273|consensus

Probab=99.97  E-value=1.1e-28  Score=199.94  Aligned_cols=218  Identities=20%  Similarity=0.332  Sum_probs=176.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc--------------------------ccCCCE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ--------------------------AKNNTR   54 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~--------------------------~~~~~~   54 (231)
                      |+.||.+|+|+ .+|.++.+|..|+++|+++.|+..|+++++++.|..                          .+++..
T Consensus       253 G~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~  331 (524)
T KOG0273|consen  253 GSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE  331 (524)
T ss_pred             eecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence            46799999999 679999999999999999999999999999977642                          237788


Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEe
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLL  131 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~  131 (231)
                      +++++.|+.|+++.+....++.++. +...+..+.|.|.+..++. +.|+++++|..........+..+ ..+..+.+.+
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence            9999999999999998888877765 5678999999999998765 56789999986554433322221 1222222211


Q ss_pred             -------cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         132 -------NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       132 -------~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                             ...+..+++++.|.++++||..++.+++.|..|..||.+|+|||+|+++|+|+.||.|.||++++++.++..+
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence                   1245578999999999999999999999999999999999999999999999999999999999999887666


Q ss_pred             ccCCcccCCCCCCcccc
Q psy6442         205 CIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       205 ~~~~~~~~~~~~~~~~~  221 (231)
                      +  +...+.+.|...|-
T Consensus       492 ~--~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  492 G--TGGIFELCWNAAGD  506 (524)
T ss_pred             C--CCeEEEEEEcCCCC
Confidence            4  44455566655553

>KOG0295|consensus

Probab=99.97  E-value=1.1e-28  Score=194.48  Aligned_cols=210  Identities=20%  Similarity=0.353  Sum_probs=175.2

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc----------------------------cCCC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA----------------------------KNNT   53 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------~~~~   53 (231)
                      +.|+++++||..+|++.+.|+||++.|..+.|+..|+++++.+.|..+                            ..+.
T Consensus       127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd  206 (406)
T KOG0295|consen  127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD  206 (406)
T ss_pred             cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence            579999999999999999999999999999999999999999877532                            2678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce---EEeeeccceeEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL---IKEHKVPAQVHSAS  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~  128 (231)
                      .|+||+.|.+||.|++.++.|+.++.- ...+..++...||..++. +.+.++++|-..++++   ++.++.+.++.  .
T Consensus       207 ~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci--~  284 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECI--A  284 (406)
T ss_pred             eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEE--E
Confidence            999999999999999999999988864 456888999999987765 4567999999988844   44444443332  2


Q ss_pred             EEe-------------cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         129 LLL-------------NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       129 ~~~-------------~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      +.+             ...++.+.+++.|++|++||+.++.++-++.||..-|+.++|+|.|++|+|+++|+++++||++
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            211             0124689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeeeccCCcccCCC
Q psy6442         196 VGKTYGLWKCIEGGLNNSL  214 (231)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~  214 (231)
                      +++-+..|.. -++..+++
T Consensus       365 ~~~cmk~~~a-h~hfvt~l  382 (406)
T KOG0295|consen  365 NLQCMKTLEA-HEHFVTSL  382 (406)
T ss_pred             cceeeeccCC-CcceeEEE
Confidence            9998888873 34433333

>KOG0263|consensus

Probab=99.96  E-value=9.9e-29  Score=210.65  Aligned_cols=180  Identities=21%  Similarity=0.355  Sum_probs=161.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +|.|++||||+..|-.++..++||..+||.++|+|-|-               ++||||.|+|.++|......+++.+. 
T Consensus       469 cSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy---------------YFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  469 CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY---------------YFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             ccCCcceeeeecccceeEEEecCCCcceeeEEecCCce---------------EEEecCCCceeeeeecccCCchhhhcc
Confidence            58899999999999999999999999999999999754               57899999999999998877776654 


Q ss_pred             eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +-..+.++.|+|+..+++.+ .+.++++||..++..++.+..+. ++.++.+  +|.|+.+++|++|+.|.+||+..+.+
T Consensus       534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~--Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF--SPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE--cCCCceEeecccCCcEEEEEcCCCcc
Confidence            45678999999999998875 46799999999999999987653 6665555  88999999999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      +..+.+|++.|.++.||.||..||+++.|.+|++||+..-
T Consensus       612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999998644

>KOG0279|consensus

Probab=99.96  E-value=7.5e-28  Score=184.01  Aligned_cols=202  Identities=24%  Similarity=0.316  Sum_probs=167.2

Q ss_pred             CCcCCCceeeec-----cCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           1 MCVDGKPMLRQG-----DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~-----~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      ++.|.++.+|++     +.|...+.|+||+..|..+..+++|+               +.+|+|+|+++|+||+.+++..
T Consensus        34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~---------------~alS~swD~~lrlWDl~~g~~t   98 (315)
T KOG0279|consen   34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN---------------FALSASWDGTLRLWDLATGEST   98 (315)
T ss_pred             cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc---------------eEEeccccceEEEEEecCCcEE
Confidence            367888999987     45677899999999999999999855               4789999999999999998777


Q ss_pred             EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                      +.+. +...+.+++++||.+.++. +.+.+|.+|+.-........+.  ..-+.+..+.++.....++++++|+++++||
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn  178 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN  178 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence            6665 5678999999999988765 4588999999876555544443  2346666675555588999999999999999


Q ss_pred             CCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         152 YSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       152 ~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      +++-+..+.+.||.+.++.+++||||.+.+||+.||.+.+||++.++-...++.  ....++++|.++
T Consensus       179 l~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspn  244 (315)
T KOG0279|consen  179 LRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPN  244 (315)
T ss_pred             cCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCC
Confidence            999888899999999999999999999999999999999999999998766663  444566666654

>KOG0271|consensus

Probab=99.96  E-value=9.1e-28  Score=190.57  Aligned_cols=190  Identities=26%  Similarity=0.414  Sum_probs=162.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      +|.||+||+|+...|+++.++.||+.+|.|+.|-.+ .++.+++-|.+++                              
T Consensus       223 ~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~  301 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV  301 (480)
T ss_pred             ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence            478999999999999999999999999999999754 4677887764432                              


Q ss_pred             ---------------------------------CCCEEEEEeCCCCEEEEeCCCC-CceEEE-EeCCcceeEEEccCCCE
Q psy6442          51 ---------------------------------NNTRLISCAEDKTVRLWDVSAS-AEVQKL-EFGAVPNSLEISRDGTT   95 (231)
Q Consensus        51 ---------------------------------~~~~l~s~s~D~ti~iwd~~~~-~~~~~~-~~~~~~~~v~~~~~~~~   95 (231)
                                                       ++.+|+|||.|.++.+|+.... +++..+ .+...++.+.|+||+++
T Consensus       302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~  381 (480)
T KOG0271|consen  302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY  381 (480)
T ss_pred             hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence                                             4457999999999999987543 344333 46678999999999998


Q ss_pred             EEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEE
Q psy6442          96 ITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF  173 (231)
Q Consensus        96 ~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~  173 (231)
                      ++. +.|..+++|+.++++.+..++.+. .+..+.+  +.+.+++++|+.|.++++|++++.++...+.||..+|.++.|
T Consensus       382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw--saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw  459 (480)
T KOG0271|consen  382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW--SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW  459 (480)
T ss_pred             EEEeecccceeeeeCCCcchhhhhhhccceeEEEEe--ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence            764 678999999999999998888654 5555555  889999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEe
Q psy6442         174 SPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       174 spd~~~laS~s~d~~v~iwd  193 (231)
                      +|||..++|++.|+.++||.
T Consensus       460 spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceeecCCCceEEEeec
Confidence            99999999999999999995

>KOG0286|consensus

Probab=99.96  E-value=3.2e-27  Score=181.67  Aligned_cols=177  Identities=24%  Similarity=0.392  Sum_probs=157.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +|-|.+..|||.++|+.+..|.||.+-|.+++++|.              +.+.++||+.|++.++||++.+.++++++ 
T Consensus       162 ~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~--------------~~ntFvSg~cD~~aklWD~R~~~c~qtF~g  227 (343)
T KOG0286|consen  162 GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS--------------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEG  227 (343)
T ss_pred             cCCCceEEEEEcccceEEEEecCCcccEEEEecCCC--------------CCCeEEecccccceeeeeccCcceeEeecc
Confidence            467999999999999999999999999999999993              25568999999999999999999999987 


Q ss_pred             eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +...+++|.|.|+|..++.+ .+++.++||++..+.+..+..+.   ++..  +.++..|+++.+|..|.++.+||.-.+
T Consensus       228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS--v~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS--VAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee--EEEcccccEEEeeecCCceeEeecccc
Confidence            56789999999999987765 56899999999988877765432   3443  445888999999999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +....+.||...|.++..+|||.-++|+|.|.++|||.
T Consensus       306 e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999994

>KOG0279|consensus

Probab=99.95  E-value=8.4e-27  Score=178.29  Aligned_cols=183  Identities=19%  Similarity=0.313  Sum_probs=150.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +|-|+++|+||..+|+..+.|.||..-|.+++|++|               +.+++|+|.|+||++|++-.. +..++.-
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d---------------n~qivSGSrDkTiklwnt~g~-ck~t~~~  144 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD---------------NRQIVSGSRDKTIKLWNTLGV-CKYTIHE  144 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCC---------------CceeecCCCcceeeeeeeccc-EEEEEec
Confidence            467999999999999999999999999999999997               567999999999999998653 3344432


Q ss_pred             ---CCcceeEEEccCC--CEEE-EEcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy6442          81 ---GAVPNSLEISRDG--TTIT-VTHGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus        81 ---~~~~~~v~~~~~~--~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~  153 (231)
                         ...+.++.|+|+.  ..++ ++.|+++++||+++.+....+..+. .++.+.  .+|+|.++++|+.|+.+.+||+.
T Consensus       145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~--vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT--VSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE--ECCCCCEEecCCCCceEEEEEcc
Confidence               4578999999985  2322 3568899999999888777765544 344433  49999999999999999999999


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .++.++.++ |..+|++++|+|+...|+.+. +-.|+|||+.+++.+..+
T Consensus       223 ~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  223 EGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             CCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence            999988876 889999999999976666554 455999999999887654

>KOG0291|consensus

Probab=99.95  E-value=2e-26  Score=196.02  Aligned_cols=208  Identities=18%  Similarity=0.333  Sum_probs=177.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.-|++.+|+-.+...+-..+||...+.+++.+|||+               +++||+.||.|||||..++-|+.++. 
T Consensus       326 ~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq---------------~iaTG~eDgKVKvWn~~SgfC~vTFte  390 (893)
T KOG0291|consen  326 CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ---------------LIATGAEDGKVKVWNTQSGFCFVTFTE  390 (893)
T ss_pred             CCccceEEEEEeeccceeeeccccccceeeEEECCCCc---------------EEEeccCCCcEEEEeccCceEEEEecc
Confidence            34568999999988888888999999999999999854               58999999999999999999988875 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCC-eEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL-KMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~~~~  157 (231)
                      +...++.+.|+..++.++. +-|++++.||.......+++..|.+....++..+|.+.++.+|+.|. .|++|++.+|++
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence            5678999999999997665 56999999999999999999998888888888899999999998886 699999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-CeeeeeeccCCcccCCCCCCccccccce
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG-KTYGLWKCIEGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (231)
                      +..+.||.+||.+++|+|++..|+|+|.|++||+||+-.. .+....+-  .+....+++.++|+-+-|
T Consensus       471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEE
Confidence            9999999999999999999999999999999999997544 34445553  334445566666664433

>KOG0643|consensus

Probab=99.95  E-value=3.3e-26  Score=174.24  Aligned_cols=201  Identities=24%  Similarity=0.378  Sum_probs=170.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      |+.|.++.+|-...|+-|.+|.||+|.||+++.+-+               .+.++|+|.|.++|+||+.+|+++.++..
T Consensus        28 caKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~---------------s~~liTGSAD~t~kLWDv~tGk~la~~k~   92 (327)
T KOG0643|consen   28 CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD---------------SKHLITGSADQTAKLWDVETGKQLATWKT   92 (327)
T ss_pred             ecCCCCceEEEecCCceeeeecCCCceEEEEEecCC---------------cceeeeccccceeEEEEcCCCcEEEEeec
Confidence            578999999999899999999999999999998875               44589999999999999999999999999


Q ss_pred             CCcceeEEEccCCCEEEEEcC------CeEEEEECCC-------cceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCe
Q psy6442          81 GAVPNSLEISRDGTTITVTHG------SCVTFLDANS-------LELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~------~~i~~~d~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                      +.++..+.|+++++.++++.+      ..+.++|++.       .++...+..+. ++..  ..+.|-+.++++|.+++.
T Consensus        93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~--a~Wg~l~~~ii~Ghe~G~  170 (327)
T KOG0643|consen   93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS--ALWGPLGETIIAGHEDGS  170 (327)
T ss_pred             CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee--eeecccCCEEEEecCCCc
Confidence            999999999999998776533      4678888773       23333333332 3333  345889999999999999


Q ss_pred             EEEEeCCCcce-eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         147 MYKFDYSTGAE-IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       147 i~~~d~~~~~~-~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      |..||.+++.. +..-+-|...|+++.++||..+++++|.|.+.++||..+-..+.....-.|.-++.|++--
T Consensus       171 is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  171 ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             EEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence            99999999854 4566779999999999999999999999999999999999999988888888778777743

>KOG0286|consensus

Probab=99.95  E-value=1.4e-25  Score=172.77  Aligned_cols=217  Identities=21%  Similarity=0.312  Sum_probs=184.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA-------------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-------------------------------   49 (231)
                      +|.||++.+||..|....+.+.--+..|..++|+|.|+.++.|+.|-..                               
T Consensus        73 aSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~  152 (343)
T KOG0286|consen   73 ASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR  152 (343)
T ss_pred             eccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEE
Confidence            4789999999999998888888788999999999999999999876311                               


Q ss_pred             -cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeecc-cee
Q psy6442          50 -KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKVP-AQV  124 (231)
Q Consensus        50 -~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~  124 (231)
                       .++..|+|+|.|.|+.+||+++++.+..+. +...+.++.++| ++++++. +.+...++||.+.....+.+..+ ..+
T Consensus       153 f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI  232 (343)
T KOG0286|consen  153 FLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI  232 (343)
T ss_pred             EcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc
Confidence             177889999999999999999999887775 567899999999 6666543 56889999999999998888764 467


Q ss_pred             EEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       125 ~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +.+++  .|++.-+++|++|+++++||++....+..|..  -..+|++++||..|++|.+|..|.++.+||.-.++....
T Consensus       233 Nsv~f--fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~  310 (343)
T KOG0286|consen  233 NSVRF--FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV  310 (343)
T ss_pred             ceEEE--ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE
Confidence            77666  88899999999999999999999888877763  346799999999999999999999999999999999999


Q ss_pred             eeccCCcccCCCCCCccc
Q psy6442         203 WKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~  220 (231)
                      +.+++|-.++ +++.++|
T Consensus       311 L~GHeNRvSc-l~~s~DG  327 (343)
T KOG0286|consen  311 LAGHENRVSC-LGVSPDG  327 (343)
T ss_pred             eeccCCeeEE-EEECCCC
Confidence            9988887665 3444444

>KOG0289|consensus

Probab=99.95  E-value=6.2e-26  Score=182.54  Aligned_cols=211  Identities=23%  Similarity=0.357  Sum_probs=179.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE-EE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK-LE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~-~~   79 (231)
                      |+.|.++.+++..+++.+.+|+||+.+|..+.++|+.               ..++++|.|..|+||......+... ..
T Consensus       237 GG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~---------------~~v~~aSad~~i~vws~~~~s~~~~~~~  301 (506)
T KOG0289|consen  237 GGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL---------------DTVITASADEIIRVWSVPLSSEPTSSRP  301 (506)
T ss_pred             cCCCCceEEEecchhhhhhhccCcceEEEEEEeccch---------------hheeecCCcceEEeeccccccCcccccc
Confidence            5788899999999999999999999999999999973               3478999999999999876655433 34


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +..+++.+..+|.+.+++. +.+++..+.|.++...+...... ..+...+..++|++.++.+|..|+.+++||++++..
T Consensus       302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence            6788999999999998765 56789999999988877655442 223333444599999999999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccccee
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVH  226 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (231)
                      ...|.+|.++|..++|+.+|.+||++++|+.|++||++.-+.+...+.-+..--+++.||.+|..+.++
T Consensus       382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            999999999999999999999999999999999999999888877766555557889999999988754

>KOG0282|consensus

Probab=99.94  E-value=1.4e-26  Score=188.21  Aligned_cols=189  Identities=23%  Similarity=0.363  Sum_probs=158.6

Q ss_pred             CCcCCCceeeeccC-CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~-g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +++|++|+||++.. ++++++|.||..+|..+.|+.+|               ..+.|+|.|+++|+||+.+|+++..+.
T Consensus       233 ~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g---------------~~fLS~sfD~~lKlwDtETG~~~~~f~  297 (503)
T KOG0282|consen  233 GGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG---------------TSFLSASFDRFLKLWDTETGQVLSRFH  297 (503)
T ss_pred             cCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC---------------CeeeeeecceeeeeeccccceEEEEEe
Confidence            58999999999955 89999999999999999999874               458999999999999999999999999


Q ss_pred             eCCcceeEEEccCCC-EEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          80 FGAVPNSLEISRDGT-TITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      .+..++++.+.|++. .++++ .++.|+.||+++.+.++++..+. .+..+.+  -+++..+++.++|+.+++|+...+.
T Consensus       298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F--~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF--VDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE--ccCCceEeeeccCccEEEEEcCCCc
Confidence            999999999999994 44444 47899999999999888776554 3444444  6788889999999999999865432


Q ss_pred             ee----------------------------------------------eeccCCC--CCeeEEEEcCCCCEEEEeeCCCc
Q psy6442         157 EI----------------------------------------------ESFKGHF--GPIHCVKFSPDGELYASGSEDGT  188 (231)
Q Consensus       157 ~~----------------------------------------------~~~~~h~--~~V~~v~~spd~~~laS~s~d~~  188 (231)
                      .+                                              ..|+||.  +--..+.|||||++|+||+.||.
T Consensus       376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            11                                              1355664  33567899999999999999999


Q ss_pred             EEEEeCCCCCeeeeeecc
Q psy6442         189 LRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       189 v~iwd~~~~~~~~~~~~~  206 (231)
                      +.+||.++-+.+..|+..
T Consensus       456 v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  456 VNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             EEEeechhhhhhhccccC
Confidence            999999999999888876

>KOG0285|consensus

Probab=99.94  E-value=3.2e-25  Score=174.93  Aligned_cols=171  Identities=23%  Similarity=0.366  Sum_probs=149.6

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT   94 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~   94 (231)
                      ++-+.++||.|.|.++++.|.               ++.++|+|.|++++|||+.+++...++. +...+..|++++-..
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~---------------n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp  206 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPG---------------NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP  206 (460)
T ss_pred             eehhhhhhccceEEEEeeCCC---------------ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc
Confidence            345667899999999999996               6679999999999999999999888876 667889999999888


Q ss_pred             EEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEE
Q psy6442          95 TITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK  172 (231)
Q Consensus        95 ~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~  172 (231)
                      +++. +.++.++.||+...+.++.+-.+. .+.+  +..+|.-..+++|+.|.++++||+++...++.+.||..+|.++.
T Consensus       207 YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~--L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  207 YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYC--LDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             eEEEecCCCeeEEEechhhhhHHHhccccceeEE--EeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            7765 567899999999988888765543 4443  44588888999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       173 ~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      +.|-+..++|||.|++|++||++.||++...
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tl  315 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITL  315 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEee
Confidence            9998889999999999999999999987654

>KOG0315|consensus

Probab=99.94  E-value=4.3e-24  Score=161.33  Aligned_cols=201  Identities=24%  Similarity=0.295  Sum_probs=164.1

Q ss_pred             CCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEecccccccc--------------------------CCCEEE
Q psy6442           5 GKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------NNTRLI   56 (231)
Q Consensus         5 ~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------~~~~l~   56 (231)
                      -.|||+|.++++  .+.+|.+|+..|.++.|..+|+-..+|++|..++                          +...|+
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEE
Confidence            368999998886  4999999999999999999999999999986543                          557799


Q ss_pred             EEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe----eeccc-eeEEEE
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE----HKVPA-QVHSAS  128 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~----~~~~~-~~~~~~  128 (231)
                      +|..+|.|++||+....+...+.  -...+.++...|||..+++.. .+...+|++........    ++.+. .-....
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~  220 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR  220 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence            99999999999999877665543  235678999999999887654 57888898765332211    11211 223345


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +..+|+.+.+++++.|.++++|+.+.. +....+++|..-+++.+||.|+++|++|+.|+++|+|++..++++.+|++
T Consensus       221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence            556999999999999999999999876 45567899999999999999999999999999999999999999888764

>KOG0293|consensus

Probab=99.93  E-value=1.3e-25  Score=179.89  Aligned_cols=196  Identities=23%  Similarity=0.338  Sum_probs=161.9

Q ss_pred             CCcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccc---------------------------cCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQA---------------------------KNN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~   52 (231)
                      |+-|.-++|||+++|++.+.++ +|...+.+++|.|||..+.+|+-|..+                           .++
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence            4567779999999999998875 456789999999999999999776322                           178


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce--eEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ--VHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~  129 (231)
                      +.+++...|..|++++..+...+..+....++++.+++.+++++++. ....+++||......++.+.....  ...-++
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC  446 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC  446 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence            88999999999999999887777777778899999999999998876 467999999987776666544321  222222


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~  196 (231)
                      ....+..++++|++|..|++|+..++.++..+.||...|++|+|+|. ..++|||++||+||||-...
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            23445678999999999999999999999999999999999999995 57999999999999998653

>KOG0265|consensus

Probab=99.93  E-value=5.1e-25  Score=170.06  Aligned_cols=179  Identities=24%  Similarity=0.368  Sum_probs=155.9

Q ss_pred             CCcCCCceeeecc-CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~-~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +|.|..|.||... ..+...+++||++.|..+.|.+++               ..|+|||.|++++.||.+++++.+...
T Consensus        65 gG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~---------------s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   65 GGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG---------------SHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             cCCcceEEEEeccccccceeeeccccceeEeeeeccCC---------------CEEEEecCCceEEEEecccceeeehhc
Confidence            5789999999964 456788899999999999999875               458999999999999999999988876


Q ss_pred             e-CCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          80 F-GAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        80 ~-~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      . ..-++++..+.-+..++.+  .++++++||.+..+.++++..+.+..+..+  ...+..+.+|+-|..|++||++.+.
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d  207 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKND  207 (338)
T ss_pred             cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEe--cccccceeeccccCceeeeccccCc
Confidence            4 4567777766666666654  578999999999999888877777777666  6777789999999999999999999


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      .++++.||..+|+.+..+|+|.++.|-+.|.++++||++-
T Consensus       208 ~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  208 GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            9999999999999999999999999999999999999853

>KOG0277|consensus

Probab=99.93  E-value=2.4e-25  Score=168.50  Aligned_cols=209  Identities=22%  Similarity=0.285  Sum_probs=164.4

Q ss_pred             CCcCCCceeeec-cCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQG-DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~-~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++-||.+|||+. .....|+.|+.|...|.+++|++..              ...++++|+|+|||+|+...+..+.++.
T Consensus        79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--------------r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~  144 (311)
T KOG0277|consen   79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--------------RRIFLTSSWDGTIKLWDPNRPNSVQTFN  144 (311)
T ss_pred             EecCceEEEeccCCCCcchhHHHhhhhheEEecccccc--------------ceeEEeeccCCceEeecCCCCcceEeec
Confidence            467999999995 2334799999999999999999853              4457788999999999998888887765


Q ss_pred             -eCCcceeEEEccCCCEEEE--EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-
Q psy6442          80 -FGAVPNSLEISRDGTTITV--THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYST-  154 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-  154 (231)
                       +...++..+|+|....+++  +.++.+++||.+.......+..+. ++.++-+. ..+..++++|+.|..|+.||++. 
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccc-ccCCcEEEecCCCceEEEEehhhc
Confidence             4567899999998775554  567899999987654433344443 44443332 45677899999999999999976 


Q ss_pred             cceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCe------------ee-eeeccCCcccCCCCCCccc
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKT------------YG-LWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~  220 (231)
                      ..++..+.+|.-+|+.++|||.. .+||||+.|-++||||...+..            .. -|....+++-+..++|+.-
T Consensus       224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  224 RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence            45678889999999999999974 6999999999999999874432            11 2666678999999999988


Q ss_pred             cccc
Q psy6442         221 HLNN  224 (231)
Q Consensus       221 ~~~~  224 (231)
                      +.|+
T Consensus       304 ~Vw~  307 (311)
T KOG0277|consen  304 YVWN  307 (311)
T ss_pred             eeec
Confidence            7765

>KOG0266|consensus

Probab=99.93  E-value=3.5e-24  Score=183.50  Aligned_cols=191  Identities=24%  Similarity=0.394  Sum_probs=164.5

Q ss_pred             CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC-CCCCceEEE
Q psy6442           2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV-SASAEVQKL   78 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~-~~~~~~~~~   78 (231)
                      +.|+.+++|...+++  +++.+.+|...|..++|+|+++               ++++++.|++|||||+ ..+.+++++
T Consensus       178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---------------~l~s~s~D~tiriwd~~~~~~~~~~l  242 (456)
T KOG0266|consen  178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---------------YLLSGSDDKTLRIWDLKDDGRNLKTL  242 (456)
T ss_pred             cCCCcEEEeecccccchhhccccccccceeeeEECCCCc---------------EEEEecCCceEEEeeccCCCeEEEEe
Confidence            578999999998888  8888999999999999999854               5899999999999999 455777777


Q ss_pred             E-eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          79 E-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        79 ~-~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      . +...+++++|+|+++.++ .+.++++++||..+.++.+....+. ++..+.  +++++..+++++.|+.|++||+.++
T Consensus       243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~--f~~d~~~l~s~s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA--FSPDGNLLVSASYDGTIRVWDLETG  320 (456)
T ss_pred             cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE--ECCCCCEEEEcCCCccEEEEECCCC
Confidence            4 567889999999996554 4568899999999988888877654 455444  4899999999999999999999998


Q ss_pred             c--eeeeccCCCCC--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         156 A--EIESFKGHFGP--IHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       156 ~--~~~~~~~h~~~--V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      .  .+..+.++..+  ++++.|+|++.++++++.|+++++||+..++....++...+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~  378 (456)
T KOG0266|consen  321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL  378 (456)
T ss_pred             ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence            8  56777777655  999999999999999999999999999999999888887776

>KOG0313|consensus

Probab=99.93  E-value=2.7e-24  Score=170.61  Aligned_cols=223  Identities=22%  Similarity=0.249  Sum_probs=170.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCC---CceeEecccccccc---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD---ASKAASGAADFQAK---------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~---~~~~~s~~~d~~~~---------------------------   50 (231)
                      +|+||.+|+|+ ..|+.+.++.||+++|.+++|-..   ...+++++.|...+                           
T Consensus       121 gsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV  199 (423)
T KOG0313|consen  121 GSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV  199 (423)
T ss_pred             eecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence            58999999999 559999999999999998888533   34588998875432                           


Q ss_pred             ----CCCEEEEEeCCCCEEEEeCCC-------------------------CCceEEEE-eCCcceeEEEccCCCEEEEEc
Q psy6442          51 ----NNTRLISCAEDKTVRLWDVSA-------------------------SAEVQKLE-FGAVPNSLEISRDGTTITVTH  100 (231)
Q Consensus        51 ----~~~~l~s~s~D~ti~iwd~~~-------------------------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  100 (231)
                          ++.+++|+|+|.+++||+...                         +.++.++. +...+.+|.|++.+....++-
T Consensus       200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~Sw  279 (423)
T KOG0313|consen  200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSW  279 (423)
T ss_pred             EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecc
Confidence                789999999999999999321                         01122222 346788999999666666777


Q ss_pred             CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc---eeeeccCCCCCeeEEEEcCCC
Q psy6442         101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA---EIESFKGHFGPIHCVKFSPDG  177 (231)
Q Consensus       101 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~---~~~~~~~h~~~V~~v~~spd~  177 (231)
                      |-+|+.||+.+.....+...+....++..  .+...++++|+.|..|++||.+++.   ..++|.||++-|.++.|+|..
T Consensus       280 DHTIk~WDletg~~~~~~~~~ksl~~i~~--~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~  357 (423)
T KOG0313|consen  280 DHTIKVWDLETGGLKSTLTTNKSLNCISY--SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN  357 (423)
T ss_pred             cceEEEEEeecccceeeeecCcceeEeec--ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence            88999999999888877777766665554  7788899999999999999998653   347789999999999999965


Q ss_pred             -CEEEEeeCCCcEEEEeCCCCC-eeeeeec-----cCCcccCCCCCCcccccccee
Q psy6442         178 -ELYASGSEDGTLRLWQTNVGK-TYGLWKC-----IEGGLNNSLGLDSSGHLNNVH  226 (231)
Q Consensus       178 -~~laS~s~d~~v~iwd~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  226 (231)
                       .+|+|++.|+++++||+++.+ +.-....     ....|+..++++..|-=.++|
T Consensus       358 ~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  358 EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLR  413 (423)
T ss_pred             ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEE
Confidence             589999999999999999887 4322211     122344444555555444444

>KOG0288|consensus

Probab=99.93  E-value=2.7e-25  Score=177.85  Aligned_cols=203  Identities=23%  Similarity=0.283  Sum_probs=164.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.|+++++|+.+.+++.++|.||+++|.++.|...               ..++++++.|++||+||+....|.+++-..
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~---------------~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~  302 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS---------------HSRVVSGSADRTIKLWDLQKAYCSKTVLPG  302 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhhcc---------------ccceeeccccchhhhhhhhhhheecccccc
Confidence            67999999999999999999999999999988754               334899999999999999999998887767


Q ss_pred             CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442          82 AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~  160 (231)
                      ...+++...  ...++-+ .+..+++||.+.............+.++..  +.++..+.+.+.|-++.++|+++.+..++
T Consensus       303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEee--ccCCeEEeeecCCCceeeeecccccEEEE
Confidence            777777776  2233333 367899999999888888877777766555  77888888889999999999998877766


Q ss_pred             ccCC----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc-ccCCCCCCcccccc
Q psy6442         161 FKGH----FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG-LNNSLGLDSSGHLN  223 (231)
Q Consensus       161 ~~~h----~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  223 (231)
                      +.+.    ...++.+.|||++.|+|+||.||.|+||++.++|.....+..-.+ -.+.++|.++|..+
T Consensus       379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL  446 (459)
T ss_pred             eeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence            5421    234888999999999999999999999999999987766542222 45677888877643

>KOG0276|consensus

Probab=99.93  E-value=1.7e-24  Score=181.14  Aligned_cols=203  Identities=20%  Similarity=0.341  Sum_probs=167.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~   79 (231)
                      |++|.+||+++-+|++.+.+|..|.+.|.++..+|.               ...++|+|.|.+||+||-..+ .|.++++
T Consensus        73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt---------------~P~vLtsSDDm~iKlW~we~~wa~~qtfe  137 (794)
T KOG0276|consen   73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT---------------LPYVLTSSDDMTIKLWDWENEWACEQTFE  137 (794)
T ss_pred             ecCCceEEEEecccceeeEEeeccccceeeeeecCC---------------CCeEEecCCccEEEEeeccCceeeeeEEc
Confidence            689999999999999999999999999999999996               456899999999999998755 5555554


Q ss_pred             -eCCcceeEEEccCCCE-E-EEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 -FGAVPNSLEISRDGTT-I-TVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~-~-~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                       +.-.++++++.|.+.. + .++-|+++++|......+..+.+.+ ..++++.....++-+.+++|++|.++++||..+.
T Consensus       138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence             3456899999997653 3 3456899999999888777776654 3677777777778889999999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee--------eeeeccCCcccCCCCCCc
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY--------GLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~  218 (231)
                      +++++++||+..|..+.|+|.-.+++|||+||++|||+..+-+..        -.|.-....-.+.|++.+
T Consensus       218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            999999999999999999999999999999999999998766542        246554445555544443

>KOG0281|consensus

Probab=99.93  E-value=1.3e-25  Score=176.69  Aligned_cols=190  Identities=17%  Similarity=0.399  Sum_probs=150.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL   55 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l   55 (231)
                      |..|.++.+||.++-.++..|.||+|.|.++++..  ..+.+|+.|.+++                         ++.++
T Consensus       213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~m  290 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYM  290 (499)
T ss_pred             ccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEE
Confidence            45789999999988889999999999999998754  4788887775543                         67889


Q ss_pred             EEEeCCCCEEEEeCCCCCce---EE-EEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEe
Q psy6442          56 ISCAEDKTVRLWDVSASAEV---QK-LEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLL  131 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  131 (231)
                      +|||.|.++.+||+.+...+   +. ..+...++.|.++.- ..+.++.+.+|+.|+..+.+.+++...+..-.+ +.  
T Consensus       291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIA-Cl--  366 (499)
T KOG0281|consen  291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA-CL--  366 (499)
T ss_pred             EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhhhcccccce-eh--
Confidence            99999999999998765421   11 123456677766543 334456788999999999999888766543322 22  


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      -..++++++|+.|.+|++||...|.++..++||..-|.++.|..  ..++||+.||.|+|||+.++.
T Consensus       367 QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  367 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccceEEEEeccccc
Confidence            45788999999999999999999999999999999999999954  579999999999999997664

>KOG0266|consensus

Probab=99.93  E-value=1e-23  Score=180.70  Aligned_cols=189  Identities=24%  Similarity=0.350  Sum_probs=158.6

Q ss_pred             CCcCCCceeeec-cCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQG-DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~-~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++.|+++|+|+. ..++.+++++||...|++++|+|++               +.+++|+.|++|||||++++++...+.
T Consensus       221 ~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---------------~~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---------------NLLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---------------CEEEEecCCCcEEEEeccCCeEEEeee
Confidence            478999999999 6778999999999999999999985               358999999999999999999998887


Q ss_pred             e-CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcc--eEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeC
Q psy6442          80 F-GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLE--LIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDY  152 (231)
Q Consensus        80 ~-~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~  152 (231)
                      . ...+..+++++++..+..+ .++.+++||..+..  +........   .+..  +.+++++..++++..|+.+++||+
T Consensus       286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~fsp~~~~ll~~~~d~~~~~w~l  363 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTS--VQFSPNGKYLLSASLDRTLKLWDL  363 (456)
T ss_pred             ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeE--EEECCCCcEEEEecCCCeEEEEEc
Confidence            4 5688999999999988765 47899999999887  334433221   2333  345899999999999999999999


Q ss_pred             CCcceeeeccCCCCC---eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         153 STGAEIESFKGHFGP---IHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       153 ~~~~~~~~~~~h~~~---V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      ..+....++.+|...   +.+...++.+.++.+++.|+.|.+||..++...+..+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  364 RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             cCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            999999999888864   445556788999999999999999999988777665544

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=5.3e-23  Score=177.89  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=147.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE------   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~------   74 (231)
                      |+.++.++||+..+...+..|.+|.+.|.+++|+|+.              +..|+|||.|++|+|||+.++..      
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~--------------~~lLASgS~DgtIrIWDi~t~~~~~~~i~  115 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCF--------------SEILASGSEDLTIRVWEIPHNDESVKEIK  115 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCC--------------CCEEEEEeCCCeEEEEECCCCCccccccc
Confidence            4678899999987778899999999999999999852              45689999999999999976421      


Q ss_pred             --eEEEE-eCCcceeEEEccCCCEEE--EEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          75 --VQKLE-FGAVPNSLEISRDGTTIT--VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        75 --~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                        +..+. +...+.+++|+|++..++  ++.++.+++||.........+..+..+..+.  +++++.++++++.|+.|++
T Consensus       116 ~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Sls--wspdG~lLat~s~D~~IrI  193 (568)
T PTZ00420        116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLK--WNIKGNLLSGTCVGKHMHI  193 (568)
T ss_pred             cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEE--ECCCCCEEEEEecCCEEEE
Confidence              12222 456789999999987654  3568999999998877665554444455444  4889999999999999999


Q ss_pred             EeCCCcceeeeccCCCCCeeE-----EEEcCCCCEEEEeeCCC----cEEEEeCCC-CCeeeee
Q psy6442         150 FDYSTGAEIESFKGHFGPIHC-----VKFSPDGELYASGSEDG----TLRLWQTNV-GKTYGLW  203 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~-----v~~spd~~~laS~s~d~----~v~iwd~~~-~~~~~~~  203 (231)
                      ||+++++.+.++.+|.+.+.+     ..|++++.+|+|++.|+    +|+|||+++ +++....
T Consensus       194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            999999999999999876543     34568999999988774    799999985 5555443

>KOG0291|consensus

Probab=99.92  E-value=1.7e-23  Score=178.34  Aligned_cols=182  Identities=18%  Similarity=0.258  Sum_probs=154.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      |+.||+|++|+...|-++.||..|+..|..+.|+..               +..|+++|-|||||.||+...+..+++..
T Consensus       368 G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~---------------g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  368 GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR---------------GNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec---------------CCEEEEeecCCeEEeeeecccceeeeecC
Confidence            689999999999999999999999999999999976               45589999999999999999999888877


Q ss_pred             CC--cceeEEEccCCCEEEEEcC--CeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          81 GA--VPNSLEISRDGTTITVTHG--SCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        81 ~~--~~~~v~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +.  +..+++..|.|..++++..  -.|.+|+..+++.+-....+ .++..+++  ++.+..++++++|.+|++||+-..
T Consensus       433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f--~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF--SPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE--ccccCeEEeccccceEEEEEeecc
Confidence            65  4568889999998887653  37889999999887665443 46665555  889999999999999999998654


Q ss_pred             c-eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         156 A-EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       156 ~-~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      . ...+++ +...+..++|+|||..||.+.-||.|.+||+..+...
T Consensus       511 ~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  511 SGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             CceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence            3 344554 7778999999999999999999999999999777655

>KOG0316|consensus

Probab=99.92  E-value=5.4e-24  Score=159.74  Aligned_cols=183  Identities=28%  Similarity=0.416  Sum_probs=151.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      |+.|.+||||++..|.+|++|+||.-.|..++.+.|               +..+++|+.|+.+.+||+.+++..+.+. 
T Consensus        35 cGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D---------------nskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   35 CGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD---------------NSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             cCCCceEEeecccccceeeeecCCCceeeecccccc---------------ccccccCCCCceEEEEEcccCeeeeeccc
Confidence            578999999999999999999999999999887765               5678999999999999999999988875 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC--cceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANS--LELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +..+++.++|..+...++. +.+..++.||-++  .++++.+... ..+..+.+    ....+++|+.||+++.||++.|
T Consensus       100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecc
Confidence            5689999999998876654 4688999999664  4445554332 23333322    3456899999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .+...+.+|  ||++++||||++....++.|+++|+-|-.+|+..+..+
T Consensus       176 ~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk  222 (307)
T KOG0316|consen  176 TLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK  222 (307)
T ss_pred             eeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence            988887776  79999999999999999999999999999998654433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=6e-23  Score=187.10  Aligned_cols=186  Identities=17%  Similarity=0.270  Sum_probs=150.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.||+|++|+..+++.+..+++|.+.|++++|+|.              ++..|+|++.|++|++||+.++.++..+..
T Consensus       551 ~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--------------~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        551 SNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA--------------DPTLLASGSDDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             EeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC--------------CCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            367999999999999999999999999999999973              245689999999999999999988888776


Q ss_pred             CCcceeEEEc-cCCCEEEE-EcCCeEEEEECCCcc-eEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-
Q psy6442          81 GAVPNSLEIS-RDGTTITV-THGSCVTFLDANSLE-LIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-  155 (231)
Q Consensus        81 ~~~~~~v~~~-~~~~~~~~-~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-  155 (231)
                      ...+.++.|. +++..+++ +.++.|++||.+... .+..... ...+..+.+  . ++..+++++.|++|++||+..+ 
T Consensus       617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCc
Confidence            6778888885 45776665 457899999987654 2333322 234444444  3 5668999999999999998642 


Q ss_pred             -----ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         156 -----AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       156 -----~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                           ..+.++.+|...+.+++|+|++.+|++|+.|++|+||+....++...+
T Consensus       694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~  746 (793)
T PLN00181        694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY  746 (793)
T ss_pred             cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence                 467889999999999999999999999999999999998776654333

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=2.4e-22  Score=159.48  Aligned_cols=216  Identities=28%  Similarity=0.432  Sum_probs=173.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCCE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNTR   54 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~~   54 (231)
                      +.||.+++|+..+++.+..+.+|...+..+.|.++++.+++++.+..+                           .++..
T Consensus        28 ~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  107 (289)
T cd00200          28 SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI  107 (289)
T ss_pred             ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence            468999999999999999999999999999999999888887654321                           13467


Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEEEEEEe
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHSASLLL  131 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~  131 (231)
                      +++++.|+.+++||+.+++....+. +...+.++.++|++..++++. ++.+.+||....+....+..+. .+..+.  +
T Consensus       108 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~--~  185 (289)
T cd00200         108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA--F  185 (289)
T ss_pred             EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEE--E
Confidence            7777779999999999877776665 455789999999988888776 8899999998777666655433 444444  4


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCccc
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLN  211 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~  211 (231)
                      ++++..+++++.++.+++||...++.+..+..|..++.+++|+|++.++++++.|+.|++|++.+++....++.. +...
T Consensus       186 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i  264 (289)
T cd00200         186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSV  264 (289)
T ss_pred             CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcE
Confidence            788888888888999999999988888888889999999999999999999999999999999988887776632 2233


Q ss_pred             CCCCCCccc
Q psy6442         212 NSLGLDSSG  220 (231)
Q Consensus       212 ~~~~~~~~~  220 (231)
                      ..+.+.+++
T Consensus       265 ~~~~~~~~~  273 (289)
T cd00200         265 TSLAWSPDG  273 (289)
T ss_pred             EEEEECCCC
Confidence            444555543

>KOG0285|consensus

Probab=99.92  E-value=6.7e-24  Score=167.47  Aligned_cols=203  Identities=21%  Similarity=0.315  Sum_probs=170.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.|+++.+||..+|++..+|.||-..|..+++++.               ..+|.+|+.|++||-||+...+.++... 
T Consensus       169 gs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---------------HpYlFs~gedk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  169 GSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---------------HPYLFSAGEDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             cCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---------------CceEEEecCCCeeEEEechhhhhHHHhcc
Confidence            588999999999999999999999999999999975               4568999999999999999998887765 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +-..++++...|.-..++. +.|..+++||+++...+.....+ .++..  +.+.+....+++|+.|.+|++||+..++.
T Consensus       234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~--V~~~~~dpqvit~S~D~tvrlWDl~agkt  311 (460)
T KOG0285|consen  234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS--VMCQPTDPQVITGSHDSTVRLWDLRAGKT  311 (460)
T ss_pred             ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee--EEeecCCCceEEecCCceEEEeeeccCce
Confidence            4567899999998776655 45789999999998877766543 34443  33466677799999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ..++..|+..|.+++.+|....+||++.|. |+-|++-.|...+.+.+ .++..|.++.-++|.|
T Consensus       312 ~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg-h~~iintl~~nsD~v~  374 (460)
T KOG0285|consen  312 MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG-HNAIINTLSVNSDGVL  374 (460)
T ss_pred             eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc-ccceeeeeeeccCceE
Confidence            999999999999999999999999999987 99999988887766544 4556677777666544

>KOG1446|consensus

Probab=99.92  E-value=1.5e-22  Score=157.32  Aligned_cols=187  Identities=21%  Similarity=0.358  Sum_probs=155.0

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .|.++|+.+..+.+.++.|.||...|.++..+|.               +..++|+|.|++||+||++..+|...+....
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~---------------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~  142 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK---------------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG  142 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCC---------------CCeEEecccCCeEEeeEecCCCCceEEecCC
Confidence            3789999999999999999999999999999996               3568999999999999999988877766543


Q ss_pred             cceeEEEccCCCEEEEEcCC-eEEEEECCCc--ceEEeeecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          83 VPNSLEISRDGTTITVTHGS-CVTFLDANSL--ELIKEHKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~~-~i~~~d~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                       ...+++.|+|..++++.++ .|.++|.+..  .+..++..+  ....-..+.++++|+.++.....+.+++.|--+|..
T Consensus       143 -~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  143 -RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             -CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence             3467899999998887655 9999998864  233444332  122222344589999999999999999999999999


Q ss_pred             eeeccCCCCCe---eEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         158 IESFKGHFGPI---HCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       158 ~~~~~~h~~~V---~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++++.++...-   .+..|+||++++.+++.||+|.+|++++|+.+..|++
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            99988776443   5789999999999999999999999999999999986

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=1.8e-22  Score=173.26  Aligned_cols=191  Identities=19%  Similarity=0.206  Sum_probs=144.0

Q ss_pred             CCcCCCceeeeccCC-------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      +|.|++|++|+..++       +.+.+|.+|...|.+++|+|++              +..|+|++.|++|+|||+.+++
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--------------~~iLaSgs~DgtVrIWDl~tg~  159 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--------------MNVLASAGADMVVNVWDVERGK  159 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--------------CCEEEEEeCCCEEEEEECCCCe
Confidence            478999999998665       3577899999999999999963              3468999999999999999988


Q ss_pred             ceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEe----cCCCeE
Q psy6442          74 EVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCG----GEDLKM  147 (231)
Q Consensus        74 ~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~d~~i  147 (231)
                      ....+. +...+.+++|+|++..++.+ .++.+++||.++.+.+.....+.........+.++...++++    +.|+.|
T Consensus       160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence            777765 45679999999999987665 578999999998877766554332211122234554455543    357899


Q ss_pred             EEEeCCCcc-eeeeccCC-CCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeeeec
Q psy6442         148 YKFDYSTGA-EIESFKGH-FGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       148 ~~~d~~~~~-~~~~~~~h-~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++||++... .+.....+ ...+....|+|++.+|++++ .|++|++||+.+++.+...+.
T Consensus       240 klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        240 MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            999997644 33433333 34566678999999998887 599999999999988766543

>KOG0284|consensus

Probab=99.92  E-value=4e-24  Score=170.99  Aligned_cols=219  Identities=21%  Similarity=0.329  Sum_probs=171.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++..|..-||++.+-.+--.+..|..+|.++.|++++..++||+.+..+.                           ++.
T Consensus       114 gs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs  193 (464)
T KOG0284|consen  114 GSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS  193 (464)
T ss_pred             ecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCc
Confidence            46678889999755555445679999999999999999999997754321                           677


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee-ccceeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK-VPAQVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~  130 (231)
                      .++|||.|++|+|||....+..+.+. ++..+.++.|+|....++. +.++.+++||.++..++.+.- ....+....+ 
T Consensus       194 kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f-  272 (464)
T KOG0284|consen  194 KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKF-  272 (464)
T ss_pred             eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEE-
Confidence            89999999999999998777666654 5678999999999777665 457899999999998876643 2334554444 


Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                       ++++..|++++.|..++++|.++.+++.++.+|+..|+++.|+|- ..+|.+++.||.|..|.+...++......+-..
T Consensus       273 -~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~  351 (464)
T KOG0284|consen  273 -NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG  351 (464)
T ss_pred             -cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence             888899999999999999999988999999999999999999995 579999999999999999866665444333333


Q ss_pred             ccCCCCCCcccc
Q psy6442         210 LNNSLGLDSSGH  221 (231)
Q Consensus       210 ~~~~~~~~~~~~  221 (231)
                      ..-++++-+=||
T Consensus       352 ~iwsl~~hPlGh  363 (464)
T KOG0284|consen  352 EIWSLAYHPLGH  363 (464)
T ss_pred             ceeeeeccccce
Confidence            333333333444

>KOG1407|consensus

Probab=99.92  E-value=6.1e-23  Score=156.02  Aligned_cols=208  Identities=25%  Similarity=0.394  Sum_probs=164.6

Q ss_pred             eeeecccccEEEEEECCCCceeEecccccccc------------------------------CCCEEEEEeCCCCEEEEe
Q psy6442          19 GTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------NNTRLISCAEDKTVRLWD   68 (231)
Q Consensus        19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------~~~~l~s~s~D~ti~iwd   68 (231)
                      +.+++|.+.|.++.|+.+|.++++++.|..+.                              ....+++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            55789999999999999999999998875432                              567899999999999999


Q ss_pred             CCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeE
Q psy6442          69 VSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKM  147 (231)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  147 (231)
                      ++.+++...+.....-..+.|+|++.++++. .+..|.++|.++.+.....+....++.+++. .+ +.++.....-|+|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~-~~-nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN-NS-NDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec-CC-CCEEEEecCCceE
Confidence            9999999999887777888999999988775 4678999999988888777777777777774 33 4444444556788


Q ss_pred             EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC---Ce-----eeeeeccCCcccCCCCCCcc
Q psy6442         148 YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG---KT-----YGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       148 ~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~---~~-----~~~~~~~~~~~~~~~~~~~~  219 (231)
                      .+....+-+++.++++|.....|++|+|+|++||+|+.|..+.|||+..-   +.     +-.-+-.|....-.|+..+-
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence            77777777888999999999999999999999999999999999997422   11     22234445555556666666


Q ss_pred             ccccceeee
Q psy6442         220 GHLNNVHEV  228 (231)
Q Consensus       220 ~~~~~~~~~  228 (231)
                      +|+-++-|+
T Consensus       252 Dh~IDIA~v  260 (313)
T KOG1407|consen  252 DHFIDIAEV  260 (313)
T ss_pred             cceEEeEec
Confidence            666555543

>KOG0296|consensus

Probab=99.91  E-value=6.4e-23  Score=162.10  Aligned_cols=192  Identities=18%  Similarity=0.244  Sum_probs=152.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      ||.|....||+..+|+++..+.||++.|.++.|+.+|.+++||+++..+.                              
T Consensus        82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH  161 (399)
T ss_pred             cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence            57788999999999999999999999999999999999999998763321                              


Q ss_pred             ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEe------C----
Q psy6442          51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEF------G----   81 (231)
Q Consensus        51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~------~----   81 (231)
                                                             ++++++++..||+|++|+..++.++..+..      +    
T Consensus       162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~  241 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL  241 (399)
T ss_pred             EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence                                                   789999999999999999998877655541      0    


Q ss_pred             ------------------------------------------CcceeEEEccCCCE---EEE-EcCCeEEEEECCCcceE
Q psy6442          82 ------------------------------------------AVPNSLEISRDGTT---ITV-THGSCVTFLDANSLELI  115 (231)
Q Consensus        82 ------------------------------------------~~~~~v~~~~~~~~---~~~-~~~~~i~~~d~~~~~~~  115 (231)
                                                                ....++.+.|....   .++ +-+++|.+||.......
T Consensus       242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence                                                      00011111111111   111 23678899998776666


Q ss_pred             EeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      .....+..+..+.|  .+ ...++++..++.|+.||.++|+++.++.||..+|.+++++|+.++++|+|.|++.+||+..
T Consensus       322 ~~c~he~~V~~l~w--~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  322 HICEHEDGVTKLKW--LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeccCCCceEEEEE--cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            66666666666665  44 5668899999999999999999999999999999999999999999999999999999864

>KOG0292|consensus

Probab=99.91  E-value=4.4e-23  Score=178.42  Aligned_cols=198  Identities=22%  Similarity=0.414  Sum_probs=161.9

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCCEEE
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNTRLI   56 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~~l~   56 (231)
                      -|.++|||=.-|.+|..|.+|.|+|..++|+|..-.+.||+.|+.+.                           .-..++
T Consensus        30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWIL  109 (1202)
T ss_pred             CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEE
Confidence            47899999988999999999999999999999999999999986553                           446799


Q ss_pred             EEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC-EEEEEcCCeEEEEECCCcceEEe-----------------
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITVTHGSCVTFLDANSLELIKE-----------------  117 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~-----------------  117 (231)
                      |||.|.|||||+..+++|+..+. +.-.+++.+|+|... .+.++-|.++++||+........                 
T Consensus       110 SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d  189 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD  189 (1202)
T ss_pred             EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence            99999999999999999998876 456789999999554 45567789999999753211000                 


Q ss_pred             ----------e--ec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEE
Q psy6442         118 ----------H--KV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYAS  182 (231)
Q Consensus       118 ----------~--~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS  182 (231)
                                +  +. .-.++-++  ++|.-+++++|++|..|++|.+...+  ++.++.||...|.++-|+|...+++|
T Consensus       190 Lfg~~DaVVK~VLEGHDRGVNwaA--fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS  267 (1202)
T KOG0292|consen  190 LFGQTDAVVKHVLEGHDRGVNWAA--FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS  267 (1202)
T ss_pred             hcCCcCeeeeeeecccccccceEE--ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence                      0  00 01223333  47888899999999999999886543  57888999999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCCeeeee
Q psy6442         183 GSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       183 ~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .|+|++|||||....+..+.+
T Consensus       268 nsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  268 NSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             cCCCccEEEEecccccceeee
Confidence            999999999999988877765

>KOG0318|consensus

Probab=99.91  E-value=6e-22  Score=163.02  Aligned_cols=198  Identities=22%  Similarity=0.393  Sum_probs=147.8

Q ss_pred             CCcCCCceeeeccCCCeEeeee---cccccEEEEEECCCCceeEecccccccc---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE---GHKGCVWGVDINKDASKAASGAADFQAK---------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~---gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------   50 (231)
                      .+.||+++++|+.+|+.+..|.   +|+|.|+++.|+||++++++.+.|...+                           
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence            3679999999999999999998   9999999999999999999998775432                           


Q ss_pred             -------------------------------------------CCCEEEEEeCCCCEEEEeCCCCCc-------------
Q psy6442          51 -------------------------------------------NNTRLISCAEDKTVRLWDVSASAE-------------   74 (231)
Q Consensus        51 -------------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~-------------   74 (231)
                                                                 +++.|+||+.||.|.-|+..++..             
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~  367 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK  367 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence                                                       667889999999999998754311             


Q ss_pred             ------------------eEEE-------------EeCC--------------------------------------cce
Q psy6442          75 ------------------VQKL-------------EFGA--------------------------------------VPN   85 (231)
Q Consensus        75 ------------------~~~~-------------~~~~--------------------------------------~~~   85 (231)
                                        ++.+             +++.                                      .+.
T Consensus       368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s  447 (603)
T KOG0318|consen  368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS  447 (603)
T ss_pred             EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence                              0000             1111                                      233


Q ss_pred             eEEEccCCCEEEEE-cCCeEEEEECCCcceEEe---eeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-ee
Q psy6442          86 SLEISRDGTTITVT-HGSCVTFLDANSLELIKE---HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-ES  160 (231)
Q Consensus        86 ~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-~~  160 (231)
                      +++++|++..++++ .+++++++.+.......+   .+...++..++  .+|++.+|+++...+.+.+||..+++.. ..
T Consensus       448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va--ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~  525 (603)
T KOG0318|consen  448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA--YSPDGAYLAAGDASRKVVLYDVASREVKTNR  525 (603)
T ss_pred             eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE--ECCCCcEEEEeccCCcEEEEEcccCceecce
Confidence            44556666665554 356777777665443222   22334454444  4999999999999999999999887753 22


Q ss_pred             ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      +.-|++.|++|+|+|+..++||||.|-+|.||++......
T Consensus       526 w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  526 WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            3349999999999999999999999999999998765543

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=1.5e-21  Score=168.86  Aligned_cols=184  Identities=17%  Similarity=0.231  Sum_probs=140.1

Q ss_pred             CCcCCCceeeeccCCC--------eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC
Q psy6442           1 MCVDGKPMLRQGDTGD--------WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--------~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~   72 (231)
                      +|.||+|++|+..++.        .+..+.+|.+.|.++.|+|++..              .|+|++.|++|+|||++++
T Consensus        93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~--------------iLaSgS~DgtIrIWDl~tg  158 (568)
T PTZ00420         93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY--------------IMCSSGFDSFVNIWDIENE  158 (568)
T ss_pred             EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe--------------EEEEEeCCCeEEEEECCCC
Confidence            4789999999987542        35578999999999999997532              4689999999999999998


Q ss_pred             CceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce-eEEEEEE---ecCCCCEEEEecCCC--
Q psy6442          73 AEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ-VHSASLL---LNSERPIFVCGGEDL--  145 (231)
Q Consensus        73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~g~~d~--  145 (231)
                      +....+.+...+.+++|+|++..++++ .++.+++||.++...+..+..+.. .....+.   +++++..+++++.+.  
T Consensus       159 ~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~  238 (568)
T PTZ00420        159 KRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN  238 (568)
T ss_pred             cEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence            877777777789999999999988765 478999999998887766654332 1111221   246777777766653  


Q ss_pred             --eEEEEeCCC-cceeeec--cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         146 --KMYKFDYST-GAEIESF--KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       146 --~i~~~d~~~-~~~~~~~--~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                        +|++||++. ...+..+  ..+.+.+......+++.++++|+.|++|++|++..+.
T Consensus       239 ~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        239 MREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             ccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence              799999984 4555543  3344555444556678999999999999999998774

>KOG0316|consensus

Probab=99.90  E-value=2.5e-22  Score=150.79  Aligned_cols=191  Identities=23%  Similarity=0.268  Sum_probs=154.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      |+.|..|.+||.+||+.++.|+||.+.|..+.|+.+...+++|+.|-.++                           ++.
T Consensus        77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h  156 (307)
T KOG0316|consen   77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH  156 (307)
T ss_pred             CCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc
Confidence            57899999999999999999999999999999999999999999875443                           567


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEe
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLL  131 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~  131 (231)
                      .++++|.||++|.||++.+.... -.++.+++++++++|++..+++ .++++++.|..+++.++.++... .........
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            89999999999999999886532 2357889999999999976665 58899999999999887766532 111111122


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC-eeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP-IHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~-V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +.....+++|++||.+++||+.....+..+..|... |.+++++|.-..|.++...+ +-.|-
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence            555667899999999999999999888888888777 89999999877777776544 44443

>KOG1332|consensus

Probab=99.90  E-value=5.9e-23  Score=154.80  Aligned_cols=210  Identities=23%  Similarity=0.307  Sum_probs=148.3

Q ss_pred             CCcCCCceeeecc-CC--CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           1 MCVDGKPMLRQGD-TG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         1 ~~~d~~~~~~~~~-~g--~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      ||.|++|+++... .|  +++.+|.||+|+||.++|..-             .-+..|+|||+||.|.||....++-.+.
T Consensus        29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP-------------k~G~iLAScsYDgkVIiWke~~g~w~k~   95 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP-------------KFGTILASCSYDGKVIIWKEENGRWTKA   95 (299)
T ss_pred             ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc-------------ccCcEeeEeecCceEEEEecCCCchhhh
Confidence            5789999999984 33  579999999999999999742             2367899999999999999888754333


Q ss_pred             EE---eCCcceeEEEccCCC--EEE-EEcCCeEEEEECCCc--ceEEeee--ccceeEEEEEEecC------------CC
Q psy6442          78 LE---FGAVPNSLEISRDGT--TIT-VTHGSCVTFLDANSL--ELIKEHK--VPAQVHSASLLLNS------------ER  135 (231)
Q Consensus        78 ~~---~~~~~~~v~~~~~~~--~~~-~~~~~~i~~~d~~~~--~~~~~~~--~~~~~~~~~~~~~~------------~~  135 (231)
                      .+   +...+++++|.|.+.  .|+ ++.|+.|.+++.+..  .....+.  .+..++++++.+..            .-
T Consensus        96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~  175 (299)
T KOG1332|consen   96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV  175 (299)
T ss_pred             hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence            32   467899999999876  333 356888888765443  1122211  12345555554321            11


Q ss_pred             CEEEEecCCCeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCCeeeeeecc---
Q psy6442         136 PIFVCGGEDLKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDG----ELYASGSEDGTLRLWQTNVGKTYGLWKCI---  206 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~----~~laS~s~d~~v~iwd~~~~~~~~~~~~~---  206 (231)
                      ..|++|+.|..+++|...+++  +-++|++|++-|++++|.|.-    ..+||||+||+|.||..+  +....|+..   
T Consensus       176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~--~e~e~wk~tll~  253 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD--EEYEPWKKTLLE  253 (299)
T ss_pred             ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec--CccCcccccccc
Confidence            458999999999999987653  345689999999999999973    589999999999999876  333334322   


Q ss_pred             -CCcccCCCCCCccccccce
Q psy6442         207 -EGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       207 -~~~~~~~~~~~~~~~~~~~  225 (231)
                       |+-..-.++++.+|-.|-|
T Consensus       254 ~f~~~~w~vSWS~sGn~LaV  273 (299)
T KOG1332|consen  254 EFPDVVWRVSWSLSGNILAV  273 (299)
T ss_pred             cCCcceEEEEEeccccEEEE
Confidence             3333444556665555443

>KOG0282|consensus

Probab=99.90  E-value=2.3e-23  Score=169.68  Aligned_cols=191  Identities=18%  Similarity=0.345  Sum_probs=162.8

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEEE-eCCcceeEEEccCC
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKLE-FGAVPNSLEISRDG   93 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~-~~~~~~~v~~~~~~   93 (231)
                      +++++|.||+..|.++.|.|..              +..|+|++.|+.|+||++.. +++++++. +...+.+++|++++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~--------------~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g  270 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKK--------------GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG  270 (503)
T ss_pred             hheeeccCCccccchhhhccce--------------eeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC
Confidence            5688999999999999999843              34589999999999999987 78887765 56789999999999


Q ss_pred             CE-EEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCC-CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEE
Q psy6442          94 TT-ITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV  171 (231)
Q Consensus        94 ~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v  171 (231)
                      .. +.++.+..+++||..++.++..+.......+..+  +|++ ..+++|+.|++|+.||.++++.++++..|-++|.++
T Consensus       271 ~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i  348 (503)
T KOG0282|consen  271 TSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI  348 (503)
T ss_pred             CeeeeeecceeeeeeccccceEEEEEecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence            85 4567899999999999999998887665555554  6666 789999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         172 KFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       172 ~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      .|-|+|++++|.++|++++||+.+.+.+++.-....-..+-.+..-+++..
T Consensus       349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~  399 (503)
T KOG0282|consen  349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW  399 (503)
T ss_pred             EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence            999999999999999999999999998887666666666666666666553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.90  E-value=4.1e-21  Score=152.33  Aligned_cols=191  Identities=26%  Similarity=0.424  Sum_probs=156.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~   53 (231)
                      ++.||.+++|+..+++.+..+.+|.+.|.++.|+++++.+++++.+..+                           .++.
T Consensus        69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence            3569999999999889999999999999999999998888877633211                           1356


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec-cceeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV-PAQVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~  130 (231)
                      .+++++.|+.|++||+..++....+... ..+.++.++|++..++++ .++.+.+||............ ...+..+.+ 
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-  227 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF-  227 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE-
Confidence            7777777999999999988777666543 478999999999766554 478999999988776666532 334544444 


Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                       ++++.++++++.++.+++|+..++..+..+.+|..+|.+++|+|++.+|++++.|+.|++|+
T Consensus       228 -~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         228 -SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -cCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence             77788888888899999999998888888889999999999999999999999999999996

>KOG0645|consensus

Probab=99.90  E-value=4.3e-21  Score=146.63  Aligned_cols=176  Identities=20%  Similarity=0.280  Sum_probs=142.2

Q ss_pred             eEeeeecccccEEEEEECCC-CceeEecccccccc-------------------------------CCCEEEEEeCCCCE
Q psy6442          17 WIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAK-------------------------------NNTRLISCAEDKTV   64 (231)
Q Consensus        17 ~i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~~-------------------------------~~~~l~s~s~D~ti   64 (231)
                      .++++++|.++||.++|+|. |..+++++.|..++                               .+++|+++|.|.|+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            56789999999999999998 88899988775432                               57889999999999


Q ss_pred             EEEeCCCC--CceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCc---ceEEeeecc-ceeEEEEEEecCCCC
Q psy6442          65 RLWDVSAS--AEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSL---ELIKEHKVP-AQVHSASLLLNSERP  136 (231)
Q Consensus        65 ~iwd~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~  136 (231)
                      -||.-..+  +++.+++ +...+.+++|+++|.+|+. +.+..+-+|.....   ++......+ +.+.-+.+  +|...
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W--HPt~d  163 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW--HPTED  163 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE--cCCcc
Confidence            99987644  5566665 4578999999999999876 46789999987632   333333322 23444444  88889


Q ss_pred             EEEEecCCCeEEEEeCCC---cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         137 IFVCGGEDLKMYKFDYST---GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~---~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +|++++.|.+|++|.-..   -.+.+++.+|...|.+++|+|.|..|++|++|++|+||-.
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            999999999999997652   2468899999999999999999999999999999999994

>KOG0265|consensus

Probab=99.90  E-value=3e-22  Score=154.83  Aligned_cols=193  Identities=21%  Similarity=0.304  Sum_probs=153.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCC-ceeEecccccccc--------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQAK--------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~-~~~~s~~~d~~~~--------------------------~~~   53 (231)
                      +|.|.+|+.||..+|+.++.+++|.+.|.+++.+.-| .++.+++.|.+.+                          ...
T Consensus       108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD  187 (338)
T ss_pred             ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence            5789999999999999999999999999999866655 3444555543321                          446


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce----EEeeec---ccee
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL----IKEHKV---PAQV  124 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~----~~~~~~---~~~~  124 (231)
                      .+.+|+-|+.||+||++.+..+..+. +...++.++.+|++..+.. +.+.++++||.+....    +..+..   ....
T Consensus       188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence            67888888888888888877776665 4578899999999987654 5688999999876543    333322   2233


Q ss_pred             EEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       125 ~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +.+...++|++..+.+|+.|..+++||......+..++||.+.|++++|+|...+|.+|+.|++|.+=.
T Consensus       268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            444555689999999999999999999988889999999999999999999999999999999998744

>KOG0284|consensus

Probab=99.89  E-value=4.3e-23  Score=165.15  Aligned_cols=178  Identities=19%  Similarity=0.296  Sum_probs=150.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ||+||++++|+....+.-+.|+||.--|.+++|+|.               ...|+|+|.|..||+||.+++.|+.+++ 
T Consensus       198 ~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---------------kgLiasgskDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  198 CSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---------------KGLIASGSKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             ecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---------------cceeEEccCCceeEeecCCCcchhhhhhh
Confidence            689999999999888888889999999999999997               3458999999999999999999998876 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      ++..|..+.|.|+++.++. +.|..++++|++..+.+..++.+ ..+....+. .-...++.+|+.|+.|..|.+...++
T Consensus       263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~Wh-P~~~~lftsgg~Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWH-PLNESLFTSGGSDGSVVHWVVGLEEP  341 (464)
T ss_pred             ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccc-cccccceeeccCCCceEEEecccccc
Confidence            5678999999999987765 56778999999987777666643 345555552 22455789999999999999875555


Q ss_pred             eeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         158 IESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       158 ~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +..+ .+|...|++++|+|-|++||+|+.|+++|.|.-
T Consensus       342 ~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  342 LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            5444 689999999999999999999999999999973

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=5.3e-21  Score=174.42  Aligned_cols=192  Identities=19%  Similarity=0.264  Sum_probs=149.4

Q ss_pred             CCCceeeeccCCCeEee-----eecccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442           4 DGKPMLRQGDTGDWIGT-----FEGHKGCVWGVDINKDASKAASGAADFQA-----------------------------   49 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~-----l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-----------------------------   49 (231)
                      +|-+++|+..+-+....     +..|.+.|++++|+|+++.+++++.|..+                             
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            44566666655444433     33599999999999999999998865321                             


Q ss_pred             ------cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec
Q psy6442          50 ------KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        50 ------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~  120 (231)
                            ..+.+|++++.|++|++||+.+++.+..+. +...+.+++|+| ++..++. +.++.+++||......+.....
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence                  124679999999999999999887776664 567799999997 5666554 4578999999988777766655


Q ss_pred             cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ...+.++.+ .++++..+++|+.|+.|++||++... .+..+.+|...|.+++|. ++.+|++++.|++|+|||+..+
T Consensus       617 ~~~v~~v~~-~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        617 KANICCVQF-PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             CCCeEEEEE-eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence            444443333 24578899999999999999998765 467788999999999997 6789999999999999999753

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=5.5e-21  Score=164.18  Aligned_cols=174  Identities=17%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             eeeccCCCeEe---eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-------ceEEE
Q psy6442           9 LRQGDTGDWIG---TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-------EVQKL   78 (231)
Q Consensus         9 ~~~~~~g~~i~---~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-------~~~~~   78 (231)
                      ++..+.|+...   .+.||++.|.+++|+|.              ++..|+|+|.|++|++||+..+.       .+..+
T Consensus        56 ~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~--------------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L  121 (493)
T PTZ00421         56 LKHTDYGKLASNPPILLGQEGPIIDVAFNPF--------------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL  121 (493)
T ss_pred             eeccccccCCCCCceEeCCCCCEEEEEEcCC--------------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEe
Confidence            33334454433   47899999999999982              14568999999999999997653       23333


Q ss_pred             E-eCCcceeEEEccCCC-EEE-EEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          79 E-FGAVPNSLEISRDGT-TIT-VTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        79 ~-~~~~~~~v~~~~~~~-~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      . +...+.+++|+|++. .++ .+.++.+++||..+...+..+... ..+..+.+  ++++.++++++.|++|++||+++
T Consensus       122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~--spdG~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW--NLDGSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE--ECCCCEEEEecCCCEEEEEECCC
Confidence            2 456789999999864 444 456889999999887776665433 34555444  88999999999999999999999


Q ss_pred             cceeeeccCCCCC-eeEEEEcCCCCEEEEee----CCCcEEEEeCCCCC
Q psy6442         155 GAEIESFKGHFGP-IHCVKFSPDGELYASGS----EDGTLRLWQTNVGK  198 (231)
Q Consensus       155 ~~~~~~~~~h~~~-V~~v~~spd~~~laS~s----~d~~v~iwd~~~~~  198 (231)
                      ++.+.++.+|.+. +..+.|.|++..+++++    .|++|+|||+++.+
T Consensus       200 g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        200 GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            9988899999865 45678999887777654    58999999998654

>KOG0273|consensus

Probab=99.89  E-value=2.1e-21  Score=157.96  Aligned_cols=184  Identities=22%  Similarity=0.334  Sum_probs=158.7

Q ss_pred             ccEEEEEECCCCceeEecccccccc--------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAK--------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      .-|.+++|+.+|..|++|..+..++                          .+++|++++.|+++.+||..++.....++
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            3599999999999999998876543                          67899999999999999999999888888


Q ss_pred             eCCcc-eeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVP-NSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~-~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +...+ .+|.|-.+..++..+.+++|+++.+....++.++..+ .++.++.+  +|.+.+|+++++|+++++|.......
T Consensus       316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE--CCCCceEEEecCCCeeEeeecCCCcc
Confidence            87766 7899999888887788899999998887777776553 46666555  89999999999999999999988888


Q ss_pred             eeeccCCCCCeeEEEEcCCC---------CEEEEeeCCCcEEEEeCCCCCeeeee-eccCCccc
Q psy6442         158 IESFKGHFGPIHCVKFSPDG---------ELYASGSEDGTLRLWQTNVGKTYGLW-KCIEGGLN  211 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~---------~~laS~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~  211 (231)
                      .+.|.+|...|..+.|+|+|         ..+++++.|++|++||+..|++...+ +--+|.++
T Consensus       394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS  457 (524)
T ss_pred             hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence            99999999999999999974         48999999999999999999998877 44455544

>KOG0319|consensus

Probab=99.89  E-value=8e-22  Score=167.71  Aligned_cols=195  Identities=17%  Similarity=0.229  Sum_probs=161.1

Q ss_pred             CCcCCCceeeeccC--C--CeEeeeecccccEEEEEECCCC-ceeEeccccccc--------------------------
Q psy6442           1 MCVDGKPMLRQGDT--G--DWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQA--------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~--g--~~i~~l~gH~~~V~~~~~~~~~-~~~~s~~~d~~~--------------------------   49 (231)
                      ||.|.+|+||..+.  +  -+++...||+..|.++.++..+ ..+++++.|-..                          
T Consensus       383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            58999999996522  2  3466678999999999998765 566677665321                          


Q ss_pred             ----------cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEe
Q psy6442          50 ----------KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKE  117 (231)
Q Consensus        50 ----------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~  117 (231)
                                ++++.++|||.|++.|||++.......++. +...+.+|.|+|..+.++. +.|.++++|.+.+..++++
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence                      177889999999999999999666666654 4567999999999887765 4678999999999999999


Q ss_pred             eeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         118 HKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       118 ~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      +..+. .+....+  -.++..+++++.||-|++|+.++++++.++.+|...|++++-+|...+++||+.|+.|.+|.-.+
T Consensus       543 ~eGH~~aVlra~F--~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  543 FEGHTSAVLRASF--IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             ecCccceeEeeee--eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            88653 4444444  56788899999999999999999999999999999999999999999999999999999997544


Q ss_pred             C
Q psy6442         197 G  197 (231)
Q Consensus       197 ~  197 (231)
                      .
T Consensus       621 e  621 (775)
T KOG0319|consen  621 E  621 (775)
T ss_pred             H
Confidence            3

>KOG0274|consensus

Probab=99.89  E-value=2e-21  Score=167.58  Aligned_cols=179  Identities=25%  Similarity=0.381  Sum_probs=148.6

Q ss_pred             CCcCCCceeeeccCCCeEee-eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++.|.++++|+..+|..+.+ |.||.+.||++++...               +..|++|+.|+|+|+||..++.|...+.
T Consensus       224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------~~~lvsgS~D~t~rvWd~~sg~C~~~l~  288 (537)
T KOG0274|consen  224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------GDKLVSGSTDKTERVWDCSTGECTHSLQ  288 (537)
T ss_pred             cCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------CCEEEEEecCCcEEeEecCCCcEEEEec
Confidence            36788899999999999998 9999999999998753               3468999999999999999999999887


Q ss_pred             -eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 -FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                       +...+..+...+. ..+..+.+.++++|+..+...++... ...++.++..    ++.++++|+.|++|++||..+++.
T Consensus       289 gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  289 GHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL----DEPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             CCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEe----cCCEEEEEecCceEEEEEhhhcee
Confidence             3444444443331 11222478899999999999988887 4446666554    377899999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-Cee
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG-KTY  200 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~-~~~  200 (231)
                      ++++.||...|.++.+.+. .++.+|+.|++|++||+.++ +-.
T Consensus       364 l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~  406 (537)
T KOG0274|consen  364 LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI  406 (537)
T ss_pred             eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence            9999999999999988776 79999999999999999998 433

>KOG0296|consensus

Probab=99.89  E-value=7.5e-21  Score=150.45  Aligned_cols=172  Identities=21%  Similarity=0.359  Sum_probs=148.4

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT   94 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~   94 (231)
                      .-+.+|..|++.|+++..+|+               +..++|+|.|....+|++.++.....+. ++..+.++.|+.++.
T Consensus        55 dS~~tF~~H~~svFavsl~P~---------------~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt  119 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPN---------------NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT  119 (399)
T ss_pred             cceeehhhcCCceEEEEeCCC---------------CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce
Confidence            457789999999999999995               4568999999999999999998766553 678999999999999


Q ss_pred             EEEEEc-CCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEE
Q psy6442          95 TITVTH-GSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK  172 (231)
Q Consensus        95 ~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~  172 (231)
                      +++.+. ++.+.+|+..++....++..+. .+.-+  .++|.+.++++|+.|+.+|.|.+.+....+.|.||..++++=.
T Consensus       120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl--~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~  197 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL--KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE  197 (399)
T ss_pred             EEEecCCCccEEEEEcccCceEEEeecccCceEEE--EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence            988764 6899999999888776665332 23222  3488999999999999999999998888899999999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         173 FSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       173 ~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      |.|+|.+++++..||+|++||..+++++...+
T Consensus       198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             ccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            99999999999999999999999999886655

>KOG0310|consensus

Probab=99.88  E-value=1.9e-21  Score=158.72  Aligned_cols=201  Identities=21%  Similarity=0.259  Sum_probs=164.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      |...|.|+++|-++-..++.+.+|+.+|..+.|+|++              ++.+++|+.|+.+++||+.+......+. 
T Consensus        86 GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d--------------~t~l~s~sDd~v~k~~d~s~a~v~~~l~~  151 (487)
T KOG0310|consen   86 GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD--------------NTMLVSGSDDKVVKYWDLSTAYVQAELSG  151 (487)
T ss_pred             cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccC--------------CeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence            3467889999955555788999999999999999964              6679999999999999999887533333 


Q ss_pred             eCCcceeEEEccCCCEEEE--EcCCeEEEEECCCc-ceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-
Q psy6442          80 FGAVPNSLEISRDGTTITV--THGSCVTFLDANSL-ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-  155 (231)
                      +...+.+.+++|....+++  ++|+.|++||++.. ..+.+++...++..+.+  -|.+.++++++ ...+++||+.+| 
T Consensus       152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~--lpsgs~iasAg-Gn~vkVWDl~~G~  228 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA--LPSGSLIASAG-GNSVKVWDLTTGG  228 (487)
T ss_pred             CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE--cCCCCEEEEcC-CCeEEEEEecCCc
Confidence            4578899999998775444  46899999999876 66677777777765554  56777777765 457899999855 


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      +.+..+..|...|+|+.+..++..|.|++-|+.|++||+.+-|.+..|+--.+-++..++.++
T Consensus       229 qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  229 QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDD  291 (487)
T ss_pred             eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCC
Confidence            555666669999999999999999999999999999999999999999998888888888754

>KOG0268|consensus

Probab=99.88  E-value=4.8e-22  Score=157.18  Aligned_cols=193  Identities=23%  Similarity=0.426  Sum_probs=150.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL   55 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l   55 (231)
                      ||.||.|++|+..+-+++.+|+.|.|.|..+.+..  ..+++.+.|.++.                         .+..+
T Consensus        85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~F  162 (433)
T KOG0268|consen   85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVF  162 (433)
T ss_pred             cccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccc
Confidence            57899999999999999999999999999998876  3333443333111                         23445


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEec
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLN  132 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  132 (231)
                      +|||.  .|-|||.....++..+..+ +.+.++.++|-...++++  .++.|.++|.+...+++........+.++|  +
T Consensus       163 aTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw--n  238 (433)
T KOG0268|consen  163 ATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW--N  238 (433)
T ss_pred             cccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec--C
Confidence            55553  4666666666666666654 457888899987765543  578999999999888877666555555666  7


Q ss_pred             CCCCEEEEecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         133 SERPIFVCGGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      |..-.+++|++|.+++.||++. ..++..+.+|..+|.+++|||.|+-++|||.|.+||||.++.+..
T Consensus       239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence            8888899999999999999975 356778899999999999999999999999999999999977764

>KOG0646|consensus

Probab=99.88  E-value=3.6e-21  Score=156.31  Aligned_cols=181  Identities=19%  Similarity=0.363  Sum_probs=149.8

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC---------CC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA---------SA   73 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~---------~~   73 (231)
                      .-|++++|...+|+++..+..|-..|.++.|+.|+               ..++|+|.||.|.+|++.+         -+
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg---------------s~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG---------------SHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC---------------cEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            77999999999999999999999999999999875               4589999999999998742         22


Q ss_pred             ceEEEE-eCCcceeEEEccCC---CEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          74 EVQKLE-FGAVPNSLEISRDG---TTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        74 ~~~~~~-~~~~~~~v~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      .+..+. +.-++.++.+.+.+   +.+.++.|.++++||+..+..+..+..|..+.++.+  +|.+..+..|+.+|.|++
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l--Dpae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL--DPAERVVYIGTEEGKIFQ  243 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE--cccccEEEecCCcceEEe
Confidence            333332 34577888877654   344567789999999999999999988888887766  889999999999999998


Q ss_pred             EeCCC----------------cceeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         150 FDYST----------------GAEIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       150 ~d~~~----------------~~~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .++..                +..+..+.||.+  +|+|++++-||.+|+||+.||.|.|||+.+.+-+
T Consensus       244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            76632                123556789998  9999999999999999999999999999877644

>KOG0305|consensus

Probab=99.88  E-value=5e-21  Score=160.54  Aligned_cols=195  Identities=22%  Similarity=0.296  Sum_probs=161.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeec-ccccEEEEEECCCCceeEecccccccc----------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAK----------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~   51 (231)
                      |..+|+|.+||..+.+.++++.+ |.+.|-+++|+  +..+.+|+.+..+.                            +
T Consensus       235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence            35789999999999999999999 99999999999  55677776654321                            7


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEE-EeCCcceeEEEccCCCEEEEE----cCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVT----HGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                      +.++|+++.|..+.|||........++ ++...+..++|+|-..-+++.    .|++|++|+..+...+.......++..
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS  392 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence            899999999999999999766665554 577889999999987755543    357999999999998888888778877


Q ss_pred             EEEEecCCCCEEE--EecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         127 ASLLLNSERPIFV--CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       127 ~~~~~~~~~~~~~--~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +.|  ++....++  .|..+..|.+|...+...+..+.+|...|..+++||||..+++|+.|.++++|++-....
T Consensus       393 L~W--sk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  393 LIW--SKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             EEE--cCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence            766  55544344  345567899999999999999999999999999999999999999999999999876443

>KOG0283|consensus

Probab=99.88  E-value=4.9e-21  Score=164.94  Aligned_cols=179  Identities=21%  Similarity=0.333  Sum_probs=144.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      .|+|.|||||...+.++|++|. |.+.|+|++|+|.              |+.+++|||-|+.||||++...+.+.-..+
T Consensus       386 SSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv--------------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl  450 (712)
T KOG0283|consen  386 SSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV--------------DDRYFISGSLDGKVRLWSISDKKVVDWNDL  450 (712)
T ss_pred             ccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc--------------CCCcEeecccccceEEeecCcCeeEeehhh
Confidence            3799999999999999999988 9999999999994              577899999999999999998887766677


Q ss_pred             CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeee--------cc-ceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHK--------VP-AQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                      ...|+++++.|||+..+++ ..|..++|+....+......        .. .+++.+.+. ..+...++..+.|.+|+++
T Consensus       451 ~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~-p~~~~~vLVTSnDSrIRI~  529 (712)
T KOG0283|consen  451 RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF-PGDPDEVLVTSNDSRIRIY  529 (712)
T ss_pred             hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec-CCCCCeEEEecCCCceEEE
Confidence            8899999999999977664 57899999987655433211        11 134444442 1222245666889999999


Q ss_pred             eCCCcceeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         151 DYSTGAEIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       151 d~~~~~~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      |.++..+++.|+|+..  .=....|+.||.+++++++|..|.||+..
T Consensus       530 d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  530 DGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             eccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            9988888999987643  33567999999999999999999999973

>KOG1407|consensus

Probab=99.88  E-value=7.5e-21  Score=144.70  Aligned_cols=219  Identities=17%  Similarity=0.221  Sum_probs=180.4

Q ss_pred             CCcCCCceeeeccCCCeEee--eecccccEEEEEECCC-CceeEecccccccc--------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKD-ASKAASGAADFQAK--------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~--l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~~--------------------------~   51 (231)
                      ++-|+++++|+.+.++++..  ++||.+.|-.+.|.|. ..++++++.+..++                          +
T Consensus        38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~  117 (313)
T KOG1407|consen   38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPD  117 (313)
T ss_pred             cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCC
Confidence            46799999999998887665  4799999999999864 57888887775443                          6


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLL  130 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  130 (231)
                      +++++.++.|.-|-+.|.++.+.....++...++.++|+.++..++...+ +++.+..-...+++..++.+. ..++++.
T Consensus       118 g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~  196 (313)
T KOG1407|consen  118 GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIE  196 (313)
T ss_pred             CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC-cceEEEE
Confidence            78889999999999999998888777777788889999977777666655 899998877777666665433 5667777


Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcc
Q psy6442         131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGL  210 (231)
Q Consensus       131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~  210 (231)
                      ++|+|+.+|+|+.|..+-+||+..--+++.+..+.-||+.++||.||++|||||+|..|-|=++++|......++  ++-
T Consensus       197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~  274 (313)
T KOG1407|consen  197 FDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGP  274 (313)
T ss_pred             ECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCC
Confidence            899999999999999999999988778888989999999999999999999999999999999999986655444  555


Q ss_pred             cCCCCCCccccc
Q psy6442         211 NNSLGLDSSGHL  222 (231)
Q Consensus       211 ~~~~~~~~~~~~  222 (231)
                      -++++|-+.-+.
T Consensus       275 t~tVAWHPk~~L  286 (313)
T KOG1407|consen  275 TFTVAWHPKRPL  286 (313)
T ss_pred             ceeEEecCCCce
Confidence            566777664443

>KOG0319|consensus

Probab=99.88  E-value=5.4e-21  Score=162.69  Aligned_cols=195  Identities=20%  Similarity=0.284  Sum_probs=157.0

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc--------------------------------C
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------------N   51 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------------~   51 (231)
                      -+.+|+++..+-.+- -+.||++.|.+++...+|..++|++.|..++                                .
T Consensus       345 s~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             CCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence            345677765544443 6789999999999777788999998875442                                3


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCce---EEE-------EeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEV---QKL-------EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~---~~~-------~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~  120 (231)
                      ...++|+|.|.++|+|++...+..   ..+       .++..+++|+++|+...++.+ .|.+.++|+............
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG  503 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG  503 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence            467999999999999999762211   111       245789999999999988764 578999999986666666655


Q ss_pred             cc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         121 PA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       121 ~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +. .+.+..  +.+..+++++++.|.+|++|.+.+.+++++|+||...|..++|-.+|.+|+||+.||-|+||++.+..=
T Consensus       504 H~RGvw~V~--Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  504 HTRGVWCVS--FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             CccceEEEE--eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence            43 454444  488889999999999999999999999999999999999999999999999999999999999987764


Q ss_pred             ee
Q psy6442         200 YG  201 (231)
Q Consensus       200 ~~  201 (231)
                      ..
T Consensus       582 ~~  583 (775)
T KOG0319|consen  582 EM  583 (775)
T ss_pred             hh
Confidence            43

>KOG0274|consensus

Probab=99.88  E-value=4.5e-21  Score=165.35  Aligned_cols=182  Identities=22%  Similarity=0.338  Sum_probs=153.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      |+.|.++|+|+..+|++.++|.||++.|.+++..+                 ..+++||.|.+||+|++..+.++..+. 
T Consensus       267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----------------~~~~sgs~D~tVkVW~v~n~~~l~l~~~  329 (537)
T KOG0274|consen  267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----------------FLLVSGSRDNTVKVWDVTNGACLNLLRG  329 (537)
T ss_pred             EecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-----------------ceEeeccCCceEEEEeccCcceEEEecc
Confidence            57899999999999999999999999999997654                 357889999999999999999999988 


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ce
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~  157 (231)
                      +..+|+++... ....+..+.++.|.+|+..+.++++....+. .+.++.+  .+. ..+++|+.|..|++||+.+. ++
T Consensus       330 h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~~~~~c  405 (537)
T KOG0274|consen  330 HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV--DSE-NRLLSGSLDTTIKVWDLRTKRKC  405 (537)
T ss_pred             ccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe--cCc-ceEEeeeeccceEeecCCchhhh
Confidence            88899999988 4445556778899999999999988877643 4444333  333 78999999999999999998 89


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +.++.+|.+-|.++.  ..+++|++++.|++|++||..+++.....++
T Consensus       406 ~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  406 IHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             hhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence            999999999886544  4567999999999999999999987766654

>KOG0640|consensus

Probab=99.87  E-value=4.7e-21  Score=149.15  Aligned_cols=188  Identities=20%  Similarity=0.295  Sum_probs=150.8

Q ss_pred             EeeeecccccEEEEEECCCCceeEecccccccc---------------------------------------------CC
Q psy6442          18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------------------------NN   52 (231)
Q Consensus        18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------------------------~~   52 (231)
                      ...+..|++++.+-.|++||.++++|+.|-.+.                                             ..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            345778999999999999999999998764321                                             35


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCc---eEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc--ceeEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAE---VQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP--AQVHS  126 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~~  126 (231)
                      ..|+|++.|++||++|+.....   ...++-..++.+++|+|.|.+++++. ...+++||.++.++.......  .....
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            7899999999999999976432   22333346789999999999988865 579999999998876554422  11222


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..+..++.+.+.++++.||.|++||--++.++.++ ++|. +.|.++.|+.+++++.|.+.|.+|++|.+.+++.....+
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            33445889999999999999999999999998887 4675 679999999999999999999999999999998775554


Q ss_pred             c
Q psy6442         205 C  205 (231)
Q Consensus       205 ~  205 (231)
                      +
T Consensus       345 G  345 (430)
T KOG0640|consen  345 G  345 (430)
T ss_pred             c
Confidence            3

>KOG0318|consensus

Probab=99.87  E-value=3.5e-20  Score=152.69  Aligned_cols=183  Identities=20%  Similarity=0.281  Sum_probs=157.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ||+|++|-++++.=-++-.+++.|+..|.++.|+|||               .+++|+|.||++.+||=.+++.+..+. 
T Consensus       166 ~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG---------------~~Fat~gsDgki~iyDGktge~vg~l~~  230 (603)
T KOG0318|consen  166 GSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG---------------SRFATAGSDGKIYIYDGKTGEKVGELED  230 (603)
T ss_pred             ccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC---------------CeEEEecCCccEEEEcCCCccEEEEecC
Confidence            6899999999988888999999999999999999985               458999999999999999999888876 


Q ss_pred             ---eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy6442          80 ---FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus        80 ---~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~  153 (231)
                         +...++.++|+||+..++ ++.+.++++||..+.++++++.....  -..+.+.+.  ...+++-+.+|.|-.++..
T Consensus       231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~  308 (603)
T KOG0318|consen  231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPS  308 (603)
T ss_pred             CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEeccc
Confidence               567899999999998765 56788999999999999888766433  122222223  4468888999999999999


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ....++.+.||...|+++..+||+.+|.||+.||.|.=|+..+|...
T Consensus       309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  309 DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            88888999999999999999999999999999999999999887643

>KOG0294|consensus

Probab=99.87  E-value=9.3e-21  Score=147.52  Aligned_cols=179  Identities=16%  Similarity=0.321  Sum_probs=154.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      |+.||.+.+|+...=+++.++++|++.|..++.+|.+++               .+|.+.|+.++.|++-.++....+.+
T Consensus       103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL---------------ALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL---------------ALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             ecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce---------------EEEEcCCceeeeehhhcCccceeecc
Confidence            578999999999888999999999999999999998654               56888999999999999988877888


Q ss_pred             CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442          81 GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~  160 (231)
                      ......|.|+|.|..+++...+.|-+|.+.+....++...+....+..+   -++..+++|+++..|.+||..+..++..
T Consensus       168 ~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~---l~~~~L~vG~d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  168 KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF---LDGSELLVGGDNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee---cCCceEEEecCCceEEEeccCCCcccee
Confidence            8888889999999988888888899999988777777666654444333   3566789999999999999999889999


Q ss_pred             ccCCCCCeeEEEE--cCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         161 FKGHFGPIHCVKF--SPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       161 ~~~h~~~V~~v~~--spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      +.+|.+.|-++.+  .|++.+|+|+|.||.|++||+...
T Consensus       245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999999999884  346789999999999999999766

>KOG0281|consensus

Probab=99.87  E-value=1.6e-21  Score=153.80  Aligned_cols=190  Identities=17%  Similarity=0.239  Sum_probs=147.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------------CC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------NN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~~   52 (231)
                      ||.|.+|++||.++|+.+.+|-+|...|..+.|+..  +..+.+.|..+.                            +.
T Consensus       253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             cCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            688999999999999999999999999999999853  555555543221                            67


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce-eEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ-VHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~  129 (231)
                      ++++|+|.|+|||+|++.+.++++++.- +..+.++++  .++.++. +.+.+|++||...+.+++....+.+ +.++.+
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF  408 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  408 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee
Confidence            8999999999999999999999988863 334444433  3444433 4578999999999988877665443 333333


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcc---------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGA---------EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~---------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                          +...+++|+.||+|++||+..+.         ++.++..|.+.|..+.|  |...+++++.|.+|-|||+-++.+-
T Consensus       409 ----d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  409 ----DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ----cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence                56679999999999999996543         23455679999999888  4558999999999999999887654

>KOG0647|consensus

Probab=99.87  E-value=9.4e-21  Score=146.75  Aligned_cols=196  Identities=21%  Similarity=0.289  Sum_probs=146.0

Q ss_pred             CCcCCCceeeeccC-CCeEee-eecccccEEEEEECCCCceeEecccccccc----------------------------
Q psy6442           1 MCVDGKPMLRQGDT-GDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~-g~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------   50 (231)
                      +|=||+||+|+... |.++.. ...|.++|.++.|+.||.++++|+.|....                            
T Consensus        46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~  125 (347)
T KOG0647|consen   46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGM  125 (347)
T ss_pred             cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCC
Confidence            36699999999965 665443 567999999999999999999998875432                            


Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcc-eEEeeeccc--eeEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE-LIKEHKVPA--QVHSA  127 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~--~~~~~  127 (231)
                      +-.+|+|+|+|+|||+||.+....+.+++++..++++..-.+ ..+++..++.|.+++++... ..+.+..|.  ..+++
T Consensus       126 ~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~v  204 (347)
T KOG0647|consen  126 NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCV  204 (347)
T ss_pred             CcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEE
Confidence            346899999999999999999999999999888776654432 23334457789999985433 334444444  34444


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCc--ceeeeccCCC---------CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTG--AEIESFKGHF---------GPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~--~~~~~~~~h~---------~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ++  ..+....+.|+-.|++-+..+..+  +.-.+|+.|.         -+|++++|+|....|++++.||+...||-..
T Consensus       205 a~--f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  205 AC--FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             EE--EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            44  555555688999999888776654  3333445554         2589999999999999999999999999765


Q ss_pred             CCe
Q psy6442         197 GKT  199 (231)
Q Consensus       197 ~~~  199 (231)
                      ...
T Consensus       283 r~k  285 (347)
T KOG0647|consen  283 RTK  285 (347)
T ss_pred             hhh
Confidence            543

>KOG0310|consensus

Probab=99.87  E-value=2.7e-20  Score=152.03  Aligned_cols=181  Identities=23%  Similarity=0.281  Sum_probs=151.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~   79 (231)
                      |++|+.+++|+.+++.....+.+|++.|.+.+|+|.              ++..++|||+||+||+||++.. ..+.++.
T Consensus       129 ~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~--------------~~hivvtGsYDg~vrl~DtR~~~~~v~eln  194 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA--------------NDHIVVTGSYDGKVRLWDTRSLTSRVVELN  194 (487)
T ss_pred             cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC--------------CCeEEEecCCCceEEEEEeccCCceeEEec
Confidence            578999999999988876689999999999999985              3456999999999999999987 6677788


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceE-Eeee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI-KEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      ++.++.++.+-|.|..++.+.++.+++||+..+... .... ....++++.+  ..++..|++|+-|+.+++||+.+-+.
T Consensus       195 hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l--~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  195 HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL--ASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEe--ecCCceEeecccccceEEEEccceEE
Confidence            899999999999999998888999999998755443 2222 3345666655  56778999999999999999877777


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ++.+. ..+||.+++.+|+++.++.|-.||.+.+=+...++
T Consensus       273 v~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  273 VHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            77775 67899999999999999999999998877554444

>KOG0300|consensus

Probab=99.87  E-value=1.4e-20  Score=147.10  Aligned_cols=192  Identities=17%  Similarity=0.265  Sum_probs=154.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      ++.|.+.++|+.++|+++.+|.||.|.|.++.|++.+.++++++.|....                              
T Consensus       166 ASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe  245 (481)
T KOG0300|consen  166 ASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE  245 (481)
T ss_pred             cccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence            47899999999999999999999999999999999999999997763211                              


Q ss_pred             -------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccC
Q psy6442          51 -------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD   92 (231)
Q Consensus        51 -------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~   92 (231)
                                                           .+++++|+|+|+|..+||+.++..+..+. +....+.++-+|.
T Consensus       246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence                                                 67899999999999999999999887765 4667889999999


Q ss_pred             CCEEEEE-cCCeEEEEECCCc-ceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCe
Q psy6442          93 GTTITVT-HGSCVTFLDANSL-ELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPI  168 (231)
Q Consensus        93 ~~~~~~~-~~~~i~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V  168 (231)
                      .+.++.+ .+.+.++||.+.. ..+..+..+. .+....+  . .+..+++|++|.+|++||++.. .++.++. -..++
T Consensus       326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF--~-~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~  401 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF--N-TDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPA  401 (481)
T ss_pred             ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE--e-cCCceeecCCCceEEEeeeccccCcceeee-cCCcc
Confidence            8877664 5789999997742 2233444332 3444444  3 3345899999999999999875 4566654 45789


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         169 HCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       169 ~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      +.++.+..+.++|---+++.|||||+.-
T Consensus       402 NRvavs~g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             ceeEeecCCceEEeccCCceEEEEecCC
Confidence            9999999999999999999999999843

>KOG0283|consensus

Probab=99.87  E-value=1.9e-20  Score=161.42  Aligned_cols=158  Identities=14%  Similarity=0.158  Sum_probs=127.0

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeeccceeEEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVPAQVHSAS  128 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  128 (231)
                      .++.|+|+|.|+|||+|++...+|+..+.+...|++++|+|-+. +++- +-|+.+++|++...++..-.+.+.-+.+++
T Consensus       379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvc  458 (712)
T KOG0283|consen  379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVC  458 (712)
T ss_pred             cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEE
Confidence            67899999999999999999999999999999999999999554 4433 458999999999888776666666666666


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeecc---------CCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK---------GHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~---------~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +  .|+|+..+.|+.+|.+++|+....+....+.         .|. .|+.+.|.|.. ..++..+.|..|||+|.+..+
T Consensus       459 y--~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~  535 (712)
T KOG0283|consen  459 Y--SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD  535 (712)
T ss_pred             e--ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence            6  8889999999999999999987655433221         133 79999999854 456677889999999998888


Q ss_pred             eeeeeeccCCccc
Q psy6442         199 TYGLWKCIEGGLN  211 (231)
Q Consensus       199 ~~~~~~~~~~~~~  211 (231)
                      ....++++.+.-+
T Consensus       536 lv~KfKG~~n~~S  548 (712)
T KOG0283|consen  536 LVHKFKGFRNTSS  548 (712)
T ss_pred             hhhhhcccccCCc
Confidence            7777776665544

>KOG0275|consensus

Probab=99.86  E-value=3.9e-21  Score=150.51  Aligned_cols=190  Identities=23%  Similarity=0.346  Sum_probs=157.4

Q ss_pred             CCcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEecccccccc---------------------------CC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAK---------------------------NN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~   52 (231)
                      |+.||++++|...+|++++.|. .|+..|.++.|+.|+..+.+++.|..++                           ++
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG  360 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence            5789999999999999999997 8999999999999999999999886554                           78


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeC---CcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeecc----ce
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVP----AQ  123 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~----~~  123 (231)
                      ..++|||.||+||+|+..+.+|+.++...   ..++++-.-|-.. .+++ ...+++.+++... +.++.+...    ..
T Consensus       361 ~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGd  439 (508)
T KOG0275|consen  361 HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGD  439 (508)
T ss_pred             CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCc
Confidence            89999999999999999999998887642   3567777766543 3444 4467777777643 344444321    22


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ...+  ..+|.|..+.+.++|+.++.|...+|.+.+++.-|...|..++-+|..++|||-++||.+++|.
T Consensus       440 Fi~~--~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  440 FINA--ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eEEE--EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            3333  3489999999999999999999999999999999999999999999999999999999999995

>KOG0643|consensus

Probab=99.86  E-value=1.3e-20  Score=143.84  Aligned_cols=192  Identities=26%  Similarity=0.394  Sum_probs=148.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccc----------cc---------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF----------QA---------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~----------~~---------------------   49 (231)
                      ++.|.+++|||..+|+.+++++ -..+|..++|+++|++++....+.          .+                     
T Consensus        70 GSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s  148 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS  148 (327)
T ss_pred             ccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence            5789999999999999999998 367899999999998776442210          00                     


Q ss_pred             --------cCCCEEEEEeCCCCEEEEeCCCCCceEE-E-EeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEee
Q psy6442          50 --------KNNTRLISCAEDKTVRLWDVSASAEVQK-L-EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEH  118 (231)
Q Consensus        50 --------~~~~~l~s~s~D~ti~iwd~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~  118 (231)
                              .-++.|++|..||.|.+||+++++.+.. . .+...++++++++|...++.+ .+.+-.+||..+.++++++
T Consensus       149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence                    1467899999999999999999855432 2 245689999999999877664 5788899999999999999


Q ss_pred             eccceeEEEEEEecCCCCEEEEecCC-Ce-E------------EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         119 KVPAQVHSASLLLNSERPIFVCGGED-LK-M------------YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~g~~d-~~-i------------~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                      ....|+++..+  .|-...++.|+.. -+ +            +.|++-.-+++..++||-+||++|+|+|+|...+||+
T Consensus       229 ~te~PvN~aai--sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  229 TTERPVNTAAI--SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             eecccccceec--ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence            99888887776  5555555555432 11 1            1122222245677889999999999999999999999


Q ss_pred             CCCcEEEEeCC
Q psy6442         185 EDGTLRLWQTN  195 (231)
Q Consensus       185 ~d~~v~iwd~~  195 (231)
                      +||.|||-.+.
T Consensus       307 EDG~VR~h~Fd  317 (327)
T KOG0643|consen  307 EDGYVRLHHFD  317 (327)
T ss_pred             CCceEEEEEec
Confidence            99999998654

>KOG2096|consensus

Probab=99.86  E-value=6.4e-21  Score=148.81  Aligned_cols=159  Identities=21%  Similarity=0.387  Sum_probs=111.2

Q ss_pred             EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce------EEEEeCCcceeEEEcc
Q psy6442          18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV------QKLEFGAVPNSLEISR   91 (231)
Q Consensus        18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~------~~~~~~~~~~~v~~~~   91 (231)
                      +.+|+||.+.|.+++|+.+|               +.|+|++.|++|++|++++....      ..++. ..++.|.|.|
T Consensus        79 ~~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~Fap  142 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAP  142 (420)
T ss_pred             hhhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECC
Confidence            55689999999999999875               45899999999999999875321      11222 2567778888


Q ss_pred             CCCEEEEE--cCCeEEEEECCC-----------------------------------------------------cceEE
Q psy6442          92 DGTTITVT--HGSCVTFLDANS-----------------------------------------------------LELIK  116 (231)
Q Consensus        92 ~~~~~~~~--~~~~i~~~d~~~-----------------------------------------------------~~~~~  116 (231)
                      |-+.++++  .++.+.+|....                                                     ++.+.
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~  222 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ  222 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee
Confidence            77655443  234555443210                                                     11111


Q ss_pred             eeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeC---CCc-----ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         117 EHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDY---STG-----AEIESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       117 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~---~~~-----~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      .++... ...-  ...+|+|+++++++...-+++|+.   +.|     .....++||.+.|+.++|||+...++|.|.||
T Consensus       223 ~idtnq~~n~~--aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  223 SIDTNQSSNYD--AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeccccccccc--eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            111111 0111  124789999999988888888876   222     23456889999999999999999999999999


Q ss_pred             cEEEEeC
Q psy6442         188 TLRLWQT  194 (231)
Q Consensus       188 ~v~iwd~  194 (231)
                      ++||||+
T Consensus       301 ~wriwdt  307 (420)
T KOG2096|consen  301 KWRIWDT  307 (420)
T ss_pred             cEEEeec
Confidence            9999997

>KOG0277|consensus

Probab=99.86  E-value=1.3e-20  Score=142.89  Aligned_cols=178  Identities=20%  Similarity=0.272  Sum_probs=140.7

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-   80 (231)
                      |=|++|+||+...++-++|++||...|+...|+|.              ....++++|.|+++++||++.......++. 
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~--------------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah  189 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH--------------IPNLFASASGDGTLRLWDVRSPGKFMSIEAH  189 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCCC--------------CCCeEEEccCCceEEEEEecCCCceeEEEec
Confidence            55999999999999999999999999999999985              356799999999999999986544444654 


Q ss_pred             CCcceeEEEccCCCEEEEE--cCCeEEEEECCCcce-EEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-
Q psy6442          81 GAVPNSLEISRDGTTITVT--HGSCVTFLDANSLEL-IKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-  155 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-  155 (231)
                      ...+.++-|+.-...+++.  .++.|+.||++..+. +.+... ...+..+.+++ ....++++++.|.++++||...+ 
T Consensus       190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp-h~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP-HHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc-chhhHhhhccccceEEecccccch
Confidence            4588999999876655543  467999999987553 233322 23445444432 23457899999999999999744 


Q ss_pred             ceeeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeC
Q psy6442         156 AEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~  194 (231)
                      ..+.+...|+.-|..+.||+ ++.++|+++.|..+.||+.
T Consensus       269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            45677888999999999999 4679999999999999984

>KOG0306|consensus

Probab=99.86  E-value=1.2e-20  Score=161.02  Aligned_cols=186  Identities=20%  Similarity=0.370  Sum_probs=154.6

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-----CC---
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-----SA---   73 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-----~~---   73 (231)
                      ...|.+.+++.....++.+.+.|.|.||+++.+||               +..++|+|.|+|||+||+.-     +.   
T Consensus       431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD---------------~~g~vT~saDktVkfWdf~l~~~~~gt~~k  495 (888)
T KOG0306|consen  431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPD---------------NKGFVTGSADKTVKFWDFKLVVSVPGTQKK  495 (888)
T ss_pred             ccCCceEEEEeehhhhhhhhhccccceeeeeecCC---------------CCceEEecCCcEEEEEeEEEEeccCcccce
Confidence            34577888888888888888899999999999997               45589999999999999731     11   


Q ss_pred             -----ceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe-eeccceeEEEEEEecCCCCEEEEecCCCe
Q psy6442          74 -----EVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        74 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                           ..+++++...+.+++++||+++++++- ++++++|-..+.+..-. +....|+.+  +..+|++.++++|+.|.+
T Consensus       496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s--mDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS--MDISPDSKLIVTGSADKN  573 (888)
T ss_pred             eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE--EeccCCcCeEEeccCCCc
Confidence                 124566778899999999999998874 78999988877765433 334456654  455899999999999999


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      |++|-+.-|.+.+.+.+|...|.++.|-|+.+++.||+.|+.|+=||....+.++.+.
T Consensus       574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            9999999999999999999999999999999999999999999999988887776554

>KOG0313|consensus

Probab=99.86  E-value=3.7e-20  Score=147.24  Aligned_cols=192  Identities=19%  Similarity=0.266  Sum_probs=154.1

Q ss_pred             CCcCCCceeeeccCCCe----EeeeecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDW----IGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~----i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------   50 (231)
                      +|+|-+++||.-+-|++    +..-+||...|-+++..+++..+.+|+.|-.+.                          
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~  244 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE  244 (423)
T ss_pred             ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence            47899999999887765    333459999999999999999999998763221                          


Q ss_pred             -------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeE
Q psy6442          51 -------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCV  104 (231)
Q Consensus        51 -------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i  104 (231)
                                               +...++|+|+|.|||.||+.++.+..++..+...+++..+|....++.+ .+..+
T Consensus       245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  245 KEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             hcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCce
Confidence                                     6678999999999999999999999888888899999999987777665 47899


Q ss_pred             EEEECCCcce--E-Eeeecc-ceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCC
Q psy6442         105 TFLDANSLEL--I-KEHKVP-AQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       105 ~~~d~~~~~~--~-~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      ++||.+...-  + ..+..+ .-+..+.+  +| +..+|++|+.|+++++||+++.. ++..+.+|...|.++.|+.- .
T Consensus       325 rl~DPR~~~gs~v~~s~~gH~nwVssvkw--sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~  401 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKW--SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-G  401 (423)
T ss_pred             eecCCCCCCCceeEEeeecchhhhhheec--CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-c
Confidence            9999886532  1 222222 12333333  44 44568999999999999999876 89999999999999999654 5


Q ss_pred             EEEEeeCCCcEEEEeCC
Q psy6442         179 LYASGSEDGTLRLWQTN  195 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~  195 (231)
                      .++||+.|.+|+|+...
T Consensus       402 ~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  402 LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEeccCcceEEEeccc
Confidence            89999999999999753

>KOG1036|consensus

Probab=99.86  E-value=3.3e-20  Score=144.02  Aligned_cols=203  Identities=20%  Similarity=0.271  Sum_probs=137.5

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.||+||+.|.++++-.. +..|.+.|.++..++.               ...++++|+|++||+||.+.......+..+
T Consensus        72 ~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~---------------~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~  135 (323)
T KOG1036|consen   72 GLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYE---------------VGCVISGSWDKTIKFWDPRNKVVVGTFDQG  135 (323)
T ss_pred             ccCceEEEEEecCCccee-eccCCCceEEEEeecc---------------CCeEEEcccCccEEEEeccccccccccccC
Confidence            345555555544443322 2335555555544432               457999999999999999976666666556


Q ss_pred             CcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEE---eeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc--
Q psy6442          82 AVPNSLEISRDGTTITV-THGSCVTFLDANSLELIK---EHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG--  155 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~--  155 (231)
                      ..++++...  +..+++ ..+.++.+||++......   +.....+..++.+  .|++.-.+.++-+|++.+=.....  
T Consensus       136 kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~--~pn~eGy~~sSieGRVavE~~d~s~~  211 (323)
T KOG1036|consen  136 KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL--VPNGEGYVVSSIEGRVAVEYFDDSEE  211 (323)
T ss_pred             ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE--ecCCCceEEEeecceEEEEccCCchH
Confidence            667666555  445555 668899999998765432   2223344555555  455555888899999877544443  


Q ss_pred             --ceeeeccCCCC---------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccccc
Q psy6442         156 --AEIESFKGHFG---------PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNN  224 (231)
Q Consensus       156 --~~~~~~~~h~~---------~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (231)
                        +.-..|+.|..         ||++++|+|-...||||+.||.|.+||+.+.|.+..+-.+ +....+++|..+|-++-
T Consensus       212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLA  290 (323)
T ss_pred             HhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEE
Confidence              22334555532         7999999999999999999999999999999987666554 45567888888888775


Q ss_pred             e
Q psy6442         225 V  225 (231)
Q Consensus       225 ~  225 (231)
                      |
T Consensus       291 i  291 (323)
T KOG1036|consen  291 I  291 (323)
T ss_pred             E
Confidence            4

>KOG0295|consensus

Probab=99.86  E-value=9.8e-20  Score=144.14  Aligned_cols=177  Identities=18%  Similarity=0.282  Sum_probs=148.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.|.++..|+.++|-++.+|.+|...|..++.+.|               +..+++||.|.++++|-+.+++|...+. 
T Consensus       211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D---------------Gti~As~s~dqtl~vW~~~t~~~k~~lR~  275 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD---------------GTIIASCSNDQTLRVWVVATKQCKAELRE  275 (406)
T ss_pred             cccccceeEEecccceeEEeccCchHhEEEEEecCC---------------eeEEEecCCCceEEEEEeccchhhhhhhc
Confidence            578999999999999999999999999999999876               4558999999999999999986654443 


Q ss_pred             eCCcceeEEEccCC---------------CEEE-EEcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEec
Q psy6442          80 FGAVPNSLEISRDG---------------TTIT-VTHGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        80 ~~~~~~~v~~~~~~---------------~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~  142 (231)
                      ++-++.+++|.|..               +.+. .+.|++|++||..+..++-+..... -+..+  +++|.|+++++..
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~--af~p~Gkyi~Sca  353 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV--AFSPGGKYILSCA  353 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeee--EEcCCCeEEEEEe
Confidence            34456666665421               2222 3467899999999999887776543 45444  4499999999999


Q ss_pred             CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         143 EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +|+++++||++..++.++++.|..-|++++|..+-.+++||+-|.++++|.-
T Consensus       354 DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  354 DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999999999999999999999999999999974

>KOG0973|consensus

Probab=99.85  E-value=9e-20  Score=160.93  Aligned_cols=221  Identities=18%  Similarity=0.261  Sum_probs=177.6

Q ss_pred             cCCCceeeecc------------CCCeEeeeecccccEEEEEECCCCceeEecccccccc--------------------
Q psy6442           3 VDGKPMLRQGD------------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------   50 (231)
Q Consensus         3 ~d~~~~~~~~~------------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------   50 (231)
                      .||..++|+.+            --+.+++...|.++|.|+.|++||+++++|+.|..+.                    
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~  114 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK  114 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence            57777788863            1356788889999999999999999999998874311                    


Q ss_pred             -------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCe
Q psy6442          51 -------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSC  103 (231)
Q Consensus        51 -------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~  103 (231)
                                               ++..|+|+|.|++|.||+.++++++..+. +...|..+.|.|-|++++. +.|.+
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt  194 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT  194 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce
Confidence                                     67899999999999999999998877775 5678999999999999886 46789


Q ss_pred             EEEEECCCcceEEeeecc-----ceeEEEEEEecCCCCEEEEecC----CCeEEEEeCCCcceeeeccCCCCCeeEEEEc
Q psy6442         104 VTFLDANSLELIKEHKVP-----AQVHSASLLLNSERPIFVCGGE----DLKMYKFDYSTGAEIESFKGHFGPIHCVKFS  174 (231)
Q Consensus       104 i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~----d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~s  174 (231)
                      +++|+..+....+.+..|     .......+.++|+|.++++...    ..++.+.+-.+-+.-..|-||.+++.+++|+
T Consensus       195 ikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFn  274 (942)
T KOG0973|consen  195 LKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFN  274 (942)
T ss_pred             EEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeC
Confidence            999998887666655443     2233345556999999998743    3457777655545556788999999999999


Q ss_pred             CC-----CC------------EEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442         175 PD-----GE------------LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       175 pd-----~~------------~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      |.     ..            .+|+||.|++|.||.....+++..-..+++....=++|.++|-.+
T Consensus       275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             hHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeE
Confidence            93     11            689999999999999999999988888999988888998888654

>KOG0302|consensus

Probab=99.84  E-value=6.8e-20  Score=145.71  Aligned_cols=182  Identities=22%  Similarity=0.347  Sum_probs=142.0

Q ss_pred             CcCCCceeeecc----------------CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEE
Q psy6442           2 CVDGKPMLRQGD----------------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVR   65 (231)
Q Consensus         2 ~~d~~~~~~~~~----------------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~   65 (231)
                      +..|.|.+|+..                ..+.+.++.+|.+.=++++|+|-              ....|+||..-+.|+
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~--------------~~g~LlsGDc~~~I~  237 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI--------------KTGRLLSGDCVKGIH  237 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc--------------cccccccCccccceE
Confidence            567888888862                23568888999998899999983              234578888889999


Q ss_pred             EEeCCCCCce----EEEEeCCcceeEEEccCCCEEEE--EcCCeEEEEECCCc---ceEEeeeccceeEEEEEEecCCCC
Q psy6442          66 LWDVSASAEV----QKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDANSL---ELIKEHKVPAQVHSASLLLNSERP  136 (231)
Q Consensus        66 iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  136 (231)
                      +|...++.-.    ....+...+..++|+|....+++  ++++.|++||.+..   ..+.+......++.++|  +....
T Consensus       238 lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW--nr~~~  315 (440)
T KOG0302|consen  238 LWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW--NRREP  315 (440)
T ss_pred             eeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc--cCCcc
Confidence            9998876431    12235678899999998876654  56899999999876   33333333456776666  77777


Q ss_pred             EEEEecCCCeEEEEeCCC---cceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         137 IFVCGGEDLKMYKFDYST---GAEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~---~~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +|++|++||++++||+++   ++++.+|+-|+++|+++.|+|. ...|++++.|.+|.|||+...+.
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999999999999999974   5678899999999999999996 46888899999999999876554

>KOG0645|consensus

Probab=99.84  E-value=4.2e-19  Score=135.84  Aligned_cols=188  Identities=20%  Similarity=0.309  Sum_probs=139.1

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQA-----------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-----------------------------   49 (231)
                      +|-|.++-+|....++  ++.+|+||...|-+++|+++|++|++.+.|..+                             
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            4678999999987665  688999999999999999999999999876432                             


Q ss_pred             -cCCCEEEEEeCCCCEEEEeCCC-C--CceEEEEe-CCcceeEEEccCCCEE-EEEcCCeEEEEECCCcceEEeeeccce
Q psy6442          50 -KNNTRLISCAEDKTVRLWDVSA-S--AEVQKLEF-GAVPNSLEISRDGTTI-TVTHGSCVTFLDANSLELIKEHKVPAQ  123 (231)
Q Consensus        50 -~~~~~l~s~s~D~ti~iwd~~~-~--~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~  123 (231)
                       .....|+|+|+|.|||+|+... .  .++.++.- ...+.+++|.|.|..+ .++.++++++|.....-. ..+  ..+
T Consensus       159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-~~~--sr~  235 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-GMH--SRA  235 (312)
T ss_pred             cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-hhc--ccc
Confidence             1347899999999999998763 2  45555543 3478899999999665 456788999997442110 001  111


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc------ee-eeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCC
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA------EI-ESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~------~~-~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~  195 (231)
                      +..+.+  .  ...+++++.|..|++|......      .+ +.-..|...|++++|.|. ..+|+||+.||.|++|.+.
T Consensus       236 ~Y~v~W--~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  236 LYDVPW--D--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eEeeee--c--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            222233  2  4468999999999999765431      11 123468889999999995 6799999999999999864

>KOG0293|consensus

Probab=99.84  E-value=2.4e-19  Score=144.15  Aligned_cols=214  Identities=17%  Similarity=0.206  Sum_probs=166.5

Q ss_pred             CCcCCCceeeeccCC---CeEeeeecccccEEEEEECCCCceeEeccccccc----------------------------
Q psy6442           1 MCVDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINKDASKAASGAADFQA----------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g---~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------   49 (231)
                      ++.|-++.+|.....   ++.++|.||..+|.-+.|+||.+++.+.+.+-..                            
T Consensus       242 aSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~  321 (519)
T KOG0293|consen  242 ASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC  321 (519)
T ss_pred             ccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEc
Confidence            467888899988433   4588999999999999999999999987654211                            


Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                      .++..+++||.|+++..||+.... ....+  -.+.+.+++.++||+.++ +..+..|++++............+.+++.
T Consensus       322 pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its  400 (519)
T KOG0293|consen  322 PDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITS  400 (519)
T ss_pred             cCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeE
Confidence            278899999999999999986542 11111  125678999999999765 46688999998776555555555666766


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC--eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP--IHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~--V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .++  +.++.+++.--.+..+++||++....+..+.||+..  +-.-+|-- +..++||||+|+.|+||+..+|+....+
T Consensus       401 ~~i--S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L  478 (519)
T KOG0293|consen  401 FSI--SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL  478 (519)
T ss_pred             EEE--cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence            555  888999999889999999999988889999999754  32334544 4579999999999999999999999999


Q ss_pred             eccCCcccCCCCCCc
Q psy6442         204 KCIEGGLNNSLGLDS  218 (231)
Q Consensus       204 ~~~~~~~~~~~~~~~  218 (231)
                      .++. ...|.+++.+
T Consensus       479 sGHs-~~vNcVswNP  492 (519)
T KOG0293|consen  479 SGHS-KTVNCVSWNP  492 (519)
T ss_pred             cCCc-ceeeEEecCC
Confidence            8865 5677777766

>KOG0264|consensus

Probab=99.84  E-value=1.4e-19  Score=146.63  Aligned_cols=211  Identities=20%  Similarity=0.264  Sum_probs=152.0

Q ss_pred             CcCCCceeeeccCCC--e--------EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           2 CVDGKPMLRQGDTGD--W--------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~--~--------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      +..+.|++|+-.+-.  .        --+|+||++.=+++.|++.              ....|++++.|++|.+||+..
T Consensus       144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~--------------~~g~Lls~~~d~~i~lwdi~~  209 (422)
T KOG0264|consen  144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ--------------QEGTLLSGSDDHTICLWDINA  209 (422)
T ss_pred             CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc--------------cceeEeeccCCCcEEEEeccc
Confidence            557788999863221  1        1168899987677888874              356799999999999999975


Q ss_pred             CCc----e---EEE-EeCCcceeEEEccCCCEEE--EEcCCeEEEEECCCc--ceEEeeec-cceeEEEEEEecCCCCEE
Q psy6442          72 SAE----V---QKL-EFGAVPNSLEISRDGTTIT--VTHGSCVTFLDANSL--ELIKEHKV-PAQVHSASLLLNSERPIF  138 (231)
Q Consensus        72 ~~~----~---~~~-~~~~~~~~v~~~~~~~~~~--~~~~~~i~~~d~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~  138 (231)
                      ...    +   ..+ .+...+..++|++-...++  ++.++++.+||.+..  +..+.... ..+++++.+.+ .++.++
T Consensus       210 ~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp-~~~~il  288 (422)
T KOG0264|consen  210 ESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP-FNEFIL  288 (422)
T ss_pred             cccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC-CCCceE
Confidence            433    1   111 2457889999999776554  567889999999852  22222222 45677666632 246678


Q ss_pred             EEecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442         139 VCGGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGL  216 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (231)
                      |+|+.|+++.+||++. ...++++++|...|..|.|||.. ..|||++.|+.+.|||+..--..+.++....+ +--+.|
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg-ppEllF  367 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG-PPELLF  367 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC-CcceeE
Confidence            9999999999999986 45789999999999999999975 68999999999999998654444445443332 444567


Q ss_pred             Cccccccceeee
Q psy6442         217 DSSGHLNNVHEV  228 (231)
Q Consensus       217 ~~~~~~~~~~~~  228 (231)
                      .+.||..-|-.|
T Consensus       368 ~HgGH~~kV~Df  379 (422)
T KOG0264|consen  368 IHGGHTAKVSDF  379 (422)
T ss_pred             EecCcccccccc
Confidence            778888776554

>KOG0308|consensus

Probab=99.83  E-value=6.6e-20  Score=154.34  Aligned_cols=186  Identities=22%  Similarity=0.328  Sum_probs=144.4

Q ss_pred             CCcCCCceeeeccCC------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC--
Q psy6442           1 MCVDGKPMLRQGDTG------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--   72 (231)
                      +|-||.+++|+...-      ..+.+++.|++.|..+....+               ++.|+|||.|-|||+|+....  
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------GKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------CCceEEecCCceEEEeecccCcc
Confidence            577999999997422      257888999999988766554               446999999999999999877  


Q ss_pred             CceEEE-EeCCcceeEEE-ccCCCEEEE-EcCCeEEEEECCCcc--eEEeee------c--cceeEEEEEEecCCCCEEE
Q psy6442          73 AEVQKL-EFGAVPNSLEI-SRDGTTITV-THGSCVTFLDANSLE--LIKEHK------V--PAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        73 ~~~~~~-~~~~~~~~v~~-~~~~~~~~~-~~~~~i~~~d~~~~~--~~~~~~------~--~~~~~~~~~~~~~~~~~~~  139 (231)
                      -|..++ ++...+.++++ .++...++. +-++.|.+||.+..-  .+..++      .  ..+...+++..++.+..++
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            444454 36678899998 444444333 347899999988652  222211      1  1223345566688888999


Q ss_pred             EecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      +|+..+.+++||.++.+.+-.+.||+..|..+-.++||..++|+|.||+||+||++..+-.+
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence            99999999999999999999999999999999999999999999999999999998776443

>KOG0267|consensus

Probab=99.83  E-value=1.3e-20  Score=160.13  Aligned_cols=185  Identities=21%  Similarity=0.288  Sum_probs=154.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      |+.|..+-||.-..-..+-.|.+|.++|-++.|+++.               ..|+.++.||+||+||+...+.++++. 
T Consensus        46 Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E---------------~LlaagsasgtiK~wDleeAk~vrtLtg  110 (825)
T KOG0267|consen   46 GGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE---------------RLLAAGSASGTIKVWDLEEAKIVRTLTG  110 (825)
T ss_pred             CCCceeeccccccCCchhheeeccCCcceeeecCcch---------------hhhcccccCCceeeeehhhhhhhhhhhc
Confidence            4567778888865555677799999999999999864               347889999999999999988877764 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce-eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +...+.+|.|+|-+.+.+- +.+..+.+||.+...+...++.+.. +..+.  +.|+|++++.|++|..+++||...|+.
T Consensus       111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~--lsP~Gr~v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR--LSPDGRWVASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEe--ecCCCceeeccCCcceeeeeccccccc
Confidence            4567889999998887643 3466889999998888888776433 33333  489999999999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +.+|++|.+.|.++.|+|..-++++|+.|++|++||+++...+..
T Consensus       189 ~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  189 SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            999999999999999999999999999999999999987766543

>KOG0275|consensus

Probab=99.83  E-value=1.4e-20  Score=147.37  Aligned_cols=164  Identities=16%  Similarity=0.306  Sum_probs=137.1

Q ss_pred             ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE---------eCCcceeEEEccCCC
Q psy6442          24 HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE---------FGAVPNSLEISRDGT   94 (231)
Q Consensus        24 H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~~~   94 (231)
                      ...-+-+..|+|||               ++|+|+|.||-|.+|+..+|+....+.         ....+.++.|+.|..
T Consensus       212 ~KSh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE  276 (508)
T KOG0275|consen  212 QKSHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE  276 (508)
T ss_pred             cccchhheeeCCCC---------------ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH
Confidence            34456677788875               458999999999999999987765543         246788999999988


Q ss_pred             EEEE-EcCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEE
Q psy6442          95 TITV-THGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV  171 (231)
Q Consensus        95 ~~~~-~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v  171 (231)
                      .++. +.++.|++|.+.++.++++++-.  ..+.+.  .++.++..+++++.|.++++--+++|+.++.|.||...|+.+
T Consensus       277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l--~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCL--SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEE--EEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence            7765 45899999999999999888643  245444  448888899999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         172 KFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       172 ~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .|++||+.++|||.||+|++|+..++.-.++++
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence            999999999999999999999998877555554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.82  E-value=1.2e-17  Score=135.11  Aligned_cols=185  Identities=16%  Similarity=0.196  Sum_probs=140.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.|+++++|+..+++.+.++.+|.. +.++.|+|+++.+              +++++.|++|++||..+++.+..+...
T Consensus         8 ~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l--------------~~~~~~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLL--------------YVCASDSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             cCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEE--------------EEEECCCCeEEEEECCCCcEEEeccCC
Confidence            5789999999999999999987654 6789999985432              466778999999999988877666655


Q ss_pred             CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCC-eEEEEeCCCccee
Q psy6442          82 AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL-KMYKFDYSTGAEI  158 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~~~~~  158 (231)
                      ..+..++++|+++.++++  .++.+.+||..+...+..+........  +.++|++..++++..+. .++.||..+++.+
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~--~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG--MAVSPDGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce--EEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence            556788999999987765  357999999988776666554333333  34488999888887765 4677898877765


Q ss_pred             eeccCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCeeeeee
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..+.. ...+.+++|+|++++|+ ++..++.|++||+.+++....++
T Consensus       151 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       151 DNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             EEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence            54432 23457899999999774 55579999999999998766554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0276|consensus

Probab=99.82  E-value=8.8e-19  Score=147.19  Aligned_cols=202  Identities=13%  Similarity=0.226  Sum_probs=161.9

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCC
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGA   82 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~   82 (231)
                      .|+|.+|+-+|...++++.--.-+|.+..|-+.               .+.+++||.|..|||++..+.+.+..++ +..
T Consensus        34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR---------------knWiv~GsDD~~IrVfnynt~ekV~~FeAH~D   98 (794)
T KOG0276|consen   34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR---------------KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD   98 (794)
T ss_pred             cCeeEEEecccceeeeeeeecccchhhheeeec---------------cceEEEecCCceEEEEecccceeeEEeecccc
Confidence            588999999988888888877778888777553               4569999999999999999999988887 467


Q ss_pred             cceeEEEccCCCEEEEEc-CCeEEEEECCCc-ceEEeeeccc-eeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCccee
Q psy6442          83 VPNSLEISRDGTTITVTH-GSCVTFLDANSL-ELIKEHKVPA-QVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      .+.+++.+|....++.+. |-.|++||.... .+.++++.+. -+..+++  +| +...+++++-|.+|++|.+.+..+.
T Consensus        99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f--nPkD~ntFaS~sLDrTVKVWslgs~~~n  176 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF--NPKDPNTFASASLDRTVKVWSLGSPHPN  176 (794)
T ss_pred             ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe--cCCCccceeeeeccccEEEEEcCCCCCc
Confidence            899999999999877765 558999997654 4456666554 3444444  44 4567999999999999999999999


Q ss_pred             eeccCCCCCeeEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc---------ccCCCCCCccccc
Q psy6442         159 ESFKGHFGPIHCVKFSPDG--ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG---------LNNSLGLDSSGHL  222 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~--~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  222 (231)
                      .+++||...|+++.|-|-|  .+|+||++|.+|+|||.++.+=+++++++.++         ++-+|+-+++|.+
T Consensus       177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            9999999999999999955  69999999999999999998877777655444         3344555556654

>KOG0299|consensus

Probab=99.82  E-value=7.1e-19  Score=142.90  Aligned_cols=202  Identities=21%  Similarity=0.328  Sum_probs=153.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-E
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-E   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~   79 (231)
                      ++.|..+.+|+..+++.+.+|++|.+.|.++.|-..               ...|+++|.|++|++|++.....+.++ .
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---------------t~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---------------TSELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecC---------------ccceeeeecCCceEEEehhHhHHHHHHhC
Confidence            456778889999999999999999999999999764               345899999999999999877665554 3


Q ss_pred             eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      ++..+..+....-.+.+.++ .|.++++|++.....+ .+..+. .+.++++ .+  ...+++|+.+|.|.+|++...++
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~-In--~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAF-IN--DEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             CccceeeechhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeEEE-ec--ccceeeccCCceEEEeeecccCc
Confidence            56677777777777777776 6889999998443222 233222 3444443 33  33489999999999999987776


Q ss_pred             eeecc-CCC-----------CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-Ceeee-eeccCCcccCCCCCCcccc
Q psy6442         158 IESFK-GHF-----------GPIHCVKFSPDGELYASGSEDGTLRLWQTNVG-KTYGL-WKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       158 ~~~~~-~h~-----------~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  221 (231)
                      +.+.. +|.           .-|++++..|...++||+|.+|.||||.+..+ +.+.. -..-.++..|+|.|..+||
T Consensus       361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence            65532 231           14789999999999999999999999999877 22222 2334788899999999999

>KOG0269|consensus

Probab=99.81  E-value=1.9e-19  Score=154.09  Aligned_cols=179  Identities=17%  Similarity=0.269  Sum_probs=136.9

Q ss_pred             CCcCCCceeeeccC---CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           1 MCVDGKPMLRQGDT---GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         1 ~~~d~~~~~~~~~~---g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      ++..|.|-+|+...   .+++..|..|+-.|.+++|++-.              ...|+|||.||+||+||++..+...+
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te--------------p~iliSGSQDg~vK~~DlR~~~S~~t  171 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE--------------PNILISGSQDGTVKCWDLRSKKSKST  171 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC--------------ccEEEecCCCceEEEEeeeccccccc
Confidence            45678999999976   56788899999999999999753              45699999999999999998877666


Q ss_pred             EEe-CCcceeEEEccCCC-EEEEE-cCCeEEEEECCCcceE-Eeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeC
Q psy6442          78 LEF-GAVPNSLEISRDGT-TITVT-HGSCVTFLDANSLELI-KEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDY  152 (231)
Q Consensus        78 ~~~-~~~~~~v~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~  152 (231)
                      ... ...+.+|.|+|... .++.. .+|.+.+||++..... ..+..+ .++.  ++.++|++.++|+|+.|++|++||+
T Consensus       172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~--c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL--CLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE--EEeecCCCceeeecCCCccEEEEec
Confidence            543 35789999998755 34433 4579999998865432 222222 2444  4455899999999999999999999


Q ss_pred             CCcce--eeeccCCCCCeeEEEEcCCCC-EEEEee--CCCcEEEEeCCC
Q psy6442         153 STGAE--IESFKGHFGPIHCVKFSPDGE-LYASGS--EDGTLRLWQTNV  196 (231)
Q Consensus       153 ~~~~~--~~~~~~h~~~V~~v~~spd~~-~laS~s--~d~~v~iwd~~~  196 (231)
                      .++..  ++++. -.++|..|+|-|+.+ .||+++  .|-.|+|||++-
T Consensus       250 t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  250 TDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             cCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence            76543  33332 457999999999864 688887  588899999854

>KOG0301|consensus

Probab=99.81  E-value=3e-18  Score=145.32  Aligned_cols=189  Identities=20%  Similarity=0.294  Sum_probs=150.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------CCCEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------NNTRLI   56 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------~~~~l~   56 (231)
                      +++|+++.+|...+.+.+.+|+||+..|++++...++. +.||++|.+.+                        ..+.++
T Consensus        77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~v  155 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYV  155 (745)
T ss_pred             ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEE
Confidence            57899999999999999999999999999999877777 88999886543                        455899


Q ss_pred             EEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCC
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSE  134 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~  134 (231)
                      |||.|++||+|.-  +++++++. +...+..+++-++..++.+++++.|++|+. +++++.++..+ .-+.+++  ....
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~  230 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALS  230 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCC
Confidence            9999999999976  55555554 567899999999999999999999999999 55555554333 3333333  3556


Q ss_pred             CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         135 RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       135 ~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ...++++++|+++++|+..  ++.+.+.--.-.|+++.+-++|.+ ++|+.||.||||....-+
T Consensus       231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEecccc
Confidence            7789999999999999865  556666534458999999999875 567779999999876433

>KOG0289|consensus

Probab=99.80  E-value=4.9e-18  Score=137.34  Aligned_cols=194  Identities=20%  Similarity=0.239  Sum_probs=160.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-----------------------------cC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA-----------------------------KN   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-----------------------------~~   51 (231)
                      ++.|..+|+|+..+.........|.++|..+..+|.|.++.+++.|...                             .|
T Consensus       279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD  358 (506)
T ss_pred             cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC
Confidence            3678899999998787777788999999999999999999999876432                             16


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      +..+.++..|+.+||||+.++..+..+. +..++..++|+.+|.++++.. ++++.+||++..+..+++..+......++
T Consensus       359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL  438 (506)
T ss_pred             ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence            7789999999999999999888666554 457899999999999988754 56799999998877777766543223334


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCC--cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYST--GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~--~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .++..|.+++.++.+.+|++++-.+  -.++..+.-|.+..+.+.|..+.+++++++.|..++|+-+
T Consensus       439 ~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  439 SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            4488899999999999999987433  3567778889999999999999999999999999998754

>KOG0305|consensus

Probab=99.79  E-value=4.1e-18  Score=143.11  Aligned_cols=183  Identities=19%  Similarity=0.253  Sum_probs=145.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-   80 (231)
                      +....|+||+..+|+...-..-+...|.++.|+++|+               .|+.+-.+|+|.|||....+.++.+.. 
T Consensus       194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---------------~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---------------HLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             EecceEEEEecCCCceEEeEecCCCceEEEEECCCCC---------------EEEEeecCCeEEEEehhhccccccccCC
Confidence            4456899999999997665565688999999999854               578888999999999998888777754 


Q ss_pred             -CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEe-ee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          81 -GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKE-HK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        81 -~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                       ...+.+++|.. ........++.|..+|.+..+.... .. ....+..  +.+++++..+|+|+.|..+.+||......
T Consensus       259 h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCg--Lkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCG--LKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhhhhhcccceeee--eEECCCCCeeccCCCccceEeccCCCccc
Confidence             66788999992 2223334578899999876554433 22 1234444  44589999999999999999999977788


Q ss_pred             eeeccCCCCCeeEEEEcCC-CCEEEEee--CCCcEEEEeCCCCCeeee
Q psy6442         158 IESFKGHFGPIHCVKFSPD-GELYASGS--EDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd-~~~laS~s--~d~~v~iwd~~~~~~~~~  202 (231)
                      +..+..|.++|-.++|+|- ..+||+|+  .|++|++||+.+|+.+..
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            8899999999999999994 67999985  799999999999987643

>KOG0641|consensus

Probab=99.79  E-value=2.6e-17  Score=123.45  Aligned_cols=170  Identities=21%  Similarity=0.328  Sum_probs=139.5

Q ss_pred             ecccccEEEEEECCCCceeEecccccccc---------------------------------------------------
Q psy6442          22 EGHKGCVWGVDINKDASKAASGAADFQAK---------------------------------------------------   50 (231)
Q Consensus        22 ~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------------------------------   50 (231)
                      +-|.|.|++++|+|.|+++++|+.|..+.                                                   
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            56899999999999999999998875432                                                   


Q ss_pred             ---------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEe--------CCcceeEEEccCCCE
Q psy6442          51 ---------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEF--------GAVPNSLEISRDGTT   95 (231)
Q Consensus        51 ---------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~   95 (231)
                                                 ++..++++|.|+|||+||++-..++.++..        ...+..|+..|.|+.
T Consensus       166 y~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence                                       778899999999999999999988887742        145789999999999


Q ss_pred             EEEEc-CCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-----eeccCCCCCe
Q psy6442          96 ITVTH-GSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-----ESFKGHFGPI  168 (231)
Q Consensus        96 ~~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-----~~~~~h~~~V  168 (231)
                      ++.+. ++...++|++....++.+-. ...+.++.+  +|....+++++.|..|++-|+. |.+.     -..-.|+..+
T Consensus       246 l~sg~~dssc~lydirg~r~iq~f~phsadir~vrf--sp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~  322 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF--SPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKA  322 (350)
T ss_pred             eeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe--CCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCce
Confidence            88765 56778899998888877543 346666555  8888899999999999999874 2222     2234699999


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         169 HCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       169 ~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ..+.|+|+.--++|.+.|+++.+|-+
T Consensus       323 i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  323 IQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EEEEecCccceeeeccCcceEEEecc
Confidence            99999999999999999999999975

>KOG0301|consensus

Probab=99.78  E-value=5.6e-18  Score=143.71  Aligned_cols=187  Identities=21%  Similarity=0.327  Sum_probs=144.2

Q ss_pred             CCcCCCceeeeccCCCeEe--eeecccccEEE-EEECC-CCceeEeccccccc--------------------------c
Q psy6442           1 MCVDGKPMLRQGDTGDWIG--TFEGHKGCVWG-VDINK-DASKAASGAADFQA--------------------------K   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~--~l~gH~~~V~~-~~~~~-~~~~~~s~~~d~~~--------------------------~   50 (231)
                      +|-||++++|+...++++.  .+.+|.+.|.. +.+.+ ++-.+..|+.|-.+                          .
T Consensus        31 ~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~  110 (745)
T KOG0301|consen   31 GSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG  110 (745)
T ss_pred             cCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecC
Confidence            4679999999987777655  47889998877 66654 44457777776332                          1


Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccce-eEEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ-VHSAS  128 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~  128 (231)
                      +...++|+|+|.|+|+|....  +...++ +...+..+..-|++.++..+.|..|++|..  ...++++..+.. ++.++
T Consensus       111 ~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  111 EDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLA  186 (745)
T ss_pred             CcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeE
Confidence            345599999999999997753  333333 566788999999997777788999999986  445566655543 44444


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      +.  ++ ..+++++.|+.|++|++ +++.+.++.||+.-|.+++..+++..++|+++|+++|||+..
T Consensus       187 vl--~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  187 VL--DD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             Ee--cC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            42  22 23788999999999999 788899999999999999988999999999999999999975

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.78  E-value=2.2e-16  Score=127.62  Aligned_cols=202  Identities=13%  Similarity=0.151  Sum_probs=142.7

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.|+.+++|+..+++.+..+..|.+ +..+.|+|+++.+              +++++.|+++++||+++++.+..+...
T Consensus        50 ~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l--------------~~~~~~~~~l~~~d~~~~~~~~~~~~~  114 (300)
T TIGR03866        50 SDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKIL--------------YIANEDDNLVTVIDIETRKVLAEIPVG  114 (300)
T ss_pred             CCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEE--------------EEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence            4578999999999999888776554 4567888876542              355667899999999988777777666


Q ss_pred             CcceeEEEccCCCEEEEEcC--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE-EecCCCeEEEEeCCCccee
Q psy6442          82 AVPNSLEISRDGTTITVTHG--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV-CGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~~~d~~~~~~~  158 (231)
                      ..+..++++|++..++++..  ..+.+||..+...............  +.+++++..++ ++..++.+++||+.+++.+
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~  192 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRF--AEFTADGKELWVSSEIGGTVSVIDVATRKVI  192 (300)
T ss_pred             CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccE--EEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence            66789999999998876543  3567788877665544433333333  33478888765 4456899999999988776


Q ss_pred             eeccCCC-----C--CeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         159 ESFKGHF-----G--PIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       159 ~~~~~h~-----~--~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ..+..+.     .  ....++|+|+++++ ++.+.++.|.+||.++++......  .......+++.++|+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~  262 (300)
T TIGR03866       193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKY  262 (300)
T ss_pred             eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCE
Confidence            6554221     1  23468899999874 445667789999999888765443  2334556677777764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0308|consensus

Probab=99.77  E-value=1.2e-17  Score=140.80  Aligned_cols=181  Identities=19%  Similarity=0.213  Sum_probs=145.9

Q ss_pred             CCcCCCceeeeccCC--CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE
Q psy6442           1 MCVDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g--~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~   76 (231)
                      +|-|-+|.+|++..+  -++.+++.|++.|.+++...              .++..+||||-|+.|++||+.++..  +.
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a--------------k~~~lvaSgGLD~~IflWDin~~~~~l~~  156 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA--------------KNNELVASGGLDRKIFLWDINTGTATLVA  156 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecc--------------cCceeEEecCCCccEEEEEccCcchhhhh
Confidence            477899999999877  57889999999999998732              2356689999999999999987733  21


Q ss_pred             EE---E-------eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCC
Q psy6442          77 KL---E-------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGED  144 (231)
Q Consensus        77 ~~---~-------~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d  144 (231)
                      ..   .       ....+++++..+.+..++.+ ..+.+++||.++.+.+-..+.+. .+..  +..+++|..+++++.|
T Consensus       157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~--ll~~dDGt~~ls~sSD  234 (735)
T KOG0308|consen  157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV--LLVNDDGTRLLSASSD  234 (735)
T ss_pred             hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE--EEEcCCCCeEeecCCC
Confidence            11   1       12467899999988544433 45799999999877665555433 3433  3458899999999999


Q ss_pred             CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ++|++||+....++.++..|+..|+++..+|+-..+.+|+.||.|..=|+++.
T Consensus       235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  235 GTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999999999999999998888773

>KOG0772|consensus

Probab=99.77  E-value=1.6e-17  Score=137.00  Aligned_cols=191  Identities=17%  Similarity=0.195  Sum_probs=135.7

Q ss_pred             eeeecccccEEEEEECCCCceeEecccccccc--------------------------------CCCEEEEEeCCCCEEE
Q psy6442          19 GTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------------NNTRLISCAEDKTVRL   66 (231)
Q Consensus        19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------------~~~~l~s~s~D~ti~i   66 (231)
                      -.|++|+..|.++.+.|.|..+++|+.|+.+.                                .+..|+..+..-.+||
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            45889999999999999988887777765432                                4455555666667777


Q ss_pred             EeCCCCCceEEEE-------------eCCcceeEEEccCCC--EEEEEcCCeEEEEECCCcc-eEEeeec----cceeEE
Q psy6442          67 WDVSASAEVQKLE-------------FGAVPNSLEISRDGT--TITVTHGSCVTFLDANSLE-LIKEHKV----PAQVHS  126 (231)
Q Consensus        67 wd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~--~~~~~~~~~i~~~d~~~~~-~~~~~~~----~~~~~~  126 (231)
                      +|-........+.             +-..+++.+|+|..+  ++.++.++++++||....+ .++.++.    ...+..
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            7754433222221             123567888999876  4556778999999987644 3333332    223333


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcc---eeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe-e
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGA---EIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT-Y  200 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~---~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~-~  200 (231)
                      .++.+++++..+|+|..||.|.+|+.....   ..+.-.+|..  .|+||+||+||++|+|-+.|+++++||+++.+. .
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence            444559999999999999999999975432   2233467877  899999999999999999999999999988764 5


Q ss_pred             eeeeccCCc
Q psy6442         201 GLWKCIEGG  209 (231)
Q Consensus       201 ~~~~~~~~~  209 (231)
                      ..|++.++.
T Consensus       401 ~~~tgL~t~  409 (641)
T KOG0772|consen  401 NVRTGLPTP  409 (641)
T ss_pred             hhhcCCCcc
Confidence            556555443

>KOG4283|consensus

Probab=99.77  E-value=4.1e-17  Score=126.54  Aligned_cols=162  Identities=20%  Similarity=0.331  Sum_probs=123.4

Q ss_pred             ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC------------ceEEEE----eCCcce
Q psy6442          22 EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA------------EVQKLE----FGAVPN   85 (231)
Q Consensus        22 ~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~------------~~~~~~----~~~~~~   85 (231)
                      +.|.|.|.++++.+-              .+++++|++.||.|.+||++...            |+...+    +...+.
T Consensus        40 r~HgGsvNsL~id~t--------------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is  105 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLT--------------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS  105 (397)
T ss_pred             ccCCCccceeeeccc--------------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence            457777777776653              46789999999999999996432            110111    234567


Q ss_pred             eEEEccCCCEEEE--EcCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeecc
Q psy6442          86 SLEISRDGTTITV--THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFK  162 (231)
Q Consensus        86 ~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~  162 (231)
                      ++.|-|-+.-++.  +.+-++++||.++.+..-.++.+..+..-.+.+-. ...++|+|..+..|++.|+.+|...+++.
T Consensus       106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             eeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence            7788776554444  45789999999998888888887766554442222 24467788888999999999999999999


Q ss_pred             CCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442         163 GHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       163 ~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~  197 (231)
                      ||.+.|.+|.|+|... .|++|+.||.||+||++.-
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            9999999999999865 6899999999999998654

>KOG0270|consensus

Probab=99.76  E-value=1.9e-17  Score=134.11  Aligned_cols=162  Identities=23%  Similarity=0.343  Sum_probs=128.2

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE--E
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV--T   99 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~--~   99 (231)
                      +|++.|.++.|+..-              -..|+|+|.|.||++||+.++++..++. +...+.+++|+|....++.  +
T Consensus       241 gHTdavl~Ls~n~~~--------------~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs  306 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNF--------------RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS  306 (463)
T ss_pred             cchHHHHHHHhcccc--------------ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc
Confidence            788888888887653              3469999999999999999999999987 6789999999998775544  4


Q ss_pred             cCCeEEEEECCCcce-EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCC-
Q psy6442         100 HGSCVTFLDANSLEL-IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPD-  176 (231)
Q Consensus       100 ~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd-  176 (231)
                      .++++.+.|.+.... -...+...++..+.|..+. ...+.++..||+++-+|.+.. +++.++++|.++|.++++++. 
T Consensus       307 ~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~  385 (463)
T KOG0270|consen  307 YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT  385 (463)
T ss_pred             ccceEEeeeccCccccCceEEeccceEEEEecCCC-ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC
Confidence            579999999885322 2334445556555663332 234667789999999999864 889999999999999999996 


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         177 GELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       177 ~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ..++++++.|+.|++|++..-.+
T Consensus       386 p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  386 PGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             CcceeeccccceEEEEeecCCCC
Confidence            56899999999999999854443

>KOG0264|consensus

Probab=99.76  E-value=3.4e-17  Score=132.88  Aligned_cols=180  Identities=19%  Similarity=0.234  Sum_probs=136.9

Q ss_pred             CCcCCCceeeeccCCCe-------EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC--
Q psy6442           1 MCVDGKPMLRQGDTGDW-------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA--   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~--   71 (231)
                      ++.|+++.+|+......       ...+.+|++.|-.++|++-              +...+++++.|+.+.|||+++  
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~--------------h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL--------------HEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc--------------chhhheeecCCCeEEEEEcCCCC
Confidence            57899999999854432       4558899999999999874              355689999999999999995  


Q ss_pred             CCceEEEE-eCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcce-EEeeecc-ceeEEEEEEecCCCCEEEEecCCCe
Q psy6442          72 SAEVQKLE-FGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLEL-IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        72 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                      .++..... +...+++++|+|-+..++++  .++++.+||+++... +..+..+ ..+..+.+++ ....++++.+.|++
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP-h~etvLASSg~D~r  340 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP-HNETVLASSGTDRR  340 (422)
T ss_pred             CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC-CCCceeEecccCCc
Confidence            34444433 46789999999988766553  478999999987654 3333332 3455555532 24567889999999


Q ss_pred             EEEEeCCCc--------------ceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCC
Q psy6442         147 MYKFDYSTG--------------AEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       147 i~~~d~~~~--------------~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~  195 (231)
                      +.+||+..-              +++...-||++.|..+.|+|.. ..++|.++|+.+.||+..
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999998532              1235556999999999999975 578999999999999864

>KOG0288|consensus

Probab=99.76  E-value=3.3e-17  Score=131.75  Aligned_cols=173  Identities=17%  Similarity=0.257  Sum_probs=139.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.|-++++||...+.+..++-.- ..+..+..+                 ...++|+-.|++||+||.++..++..++.
T Consensus       279 gs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-----------------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  279 GSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-----------------ISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             ccccchhhhhhhhhhheecccccc-ccccceEec-----------------ceeeeecccccceEEEeccCCceeeEeec
Confidence            467888889998878777775432 222333222                 23478899999999999999999999999


Q ss_pred             CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-----ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          81 GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-----AQVHSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      ++.++++..++++..+.. +.++.+.++|.++.+....+..+     .......  ++|++.++++|+.|+.+++|++.+
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv--fSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV--FSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE--ECCCCceeeeccCCCcEEEEEccC
Confidence            999999999999987665 46889999999998877766543     2233333  499999999999999999999999


Q ss_pred             cceeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         155 GAEIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       155 ~~~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            998877764443  599999999999999999999999994

>KOG0268|consensus

Probab=99.75  E-value=1.6e-17  Score=131.70  Aligned_cols=146  Identities=22%  Similarity=0.406  Sum_probs=112.9

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcce-EEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLEL-IKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~  129 (231)
                      ...|++|+.|++|.+||++...++.++......+.++|+|..-.+.++ .|-++..+|.+..+. +..+..... -...+
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs-AV~dV  278 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS-AVMDV  278 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccce-eEEEe
Confidence            456999999999999999999999999999999999999966555444 466888898776442 333333321 12345


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .++|.|+.+++|+.|.+|++|....+..-..+ ......|.+|.||.|.++++|||+|+.||+|......
T Consensus       279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            56999999999999999999998765443332 1223569999999999999999999999999975443

>KOG0321|consensus

Probab=99.75  E-value=5.1e-17  Score=136.88  Aligned_cols=196  Identities=19%  Similarity=0.278  Sum_probs=146.7

Q ss_pred             CcCCCceeeeccCCCeEee--eecccccEEEEEECCCC-ceeEecccccccc----------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDA-SKAASGAADFQAK----------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~--l~gH~~~V~~~~~~~~~-~~~~s~~~d~~~~----------------------------   50 (231)
                      +-|.++++||+++++++..  +.||++.|-+++|.+.. ..+.+|+.|+.+.                            
T Consensus       119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            5689999999999999887  99999999999999865 5677887765432                            


Q ss_pred             -----------------------------CCCEEEEEeC-CCCEEEEeCCCCCceEEEE------eC------CcceeEE
Q psy6442          51 -----------------------------NNTRLISCAE-DKTVRLWDVSASAEVQKLE------FG------AVPNSLE   88 (231)
Q Consensus        51 -----------------------------~~~~l~s~s~-D~ti~iwd~~~~~~~~~~~------~~------~~~~~v~   88 (231)
                                                   |+..|||||. |++||+||+++..+....+      +.      -.+.++.
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence                                         7788999999 9999999998765532221      11      1244666


Q ss_pred             EccCCCEEEEEc-CCeEEEEECCCcce--EEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce-eeeccC
Q psy6442          89 ISRDGTTITVTH-GSCVTFLDANSLEL--IKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE-IESFKG  163 (231)
Q Consensus        89 ~~~~~~~~~~~~-~~~i~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~-~~~~~~  163 (231)
                      ....|..+++++ |+.|.+|+......  ...+.... .-....-..++++..+++|+.|...++|.+..-+. ...+.|
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G  358 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG  358 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence            677778888764 88999999875432  22222211 11111222478999999999999999999876543 456789


Q ss_pred             CCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy6442         164 HFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       164 h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~  197 (231)
                      |.-.|++++|.|.. .-+++|++|..++||++..+
T Consensus       359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999964 46888899999999998544

>KOG2445|consensus

Probab=99.75  E-value=2.8e-16  Score=122.45  Aligned_cols=182  Identities=18%  Similarity=0.397  Sum_probs=124.4

Q ss_pred             CCcCCCceeeec--cCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC--Cc
Q psy6442           1 MCVDGKPMLRQG--DTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--AE   74 (231)
Q Consensus         1 ~~~d~~~~~~~~--~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--~~   74 (231)
                      |+.|.+|.+|+.  .+|.  +...++.|.+.|+.+.|.+-             .-|+.+++||.|++++||.....  +.
T Consensus        31 CSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP-------------EfGqvvA~cS~Drtv~iWEE~~~~~~~   97 (361)
T KOG2445|consen   31 CSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP-------------EFGQVVATCSYDRTVSIWEEQEKSEEA   97 (361)
T ss_pred             ccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc-------------cccceEEEEecCCceeeeeeccccccc
Confidence            688999999994  4555  45669999999999999763             23778999999999999976311  11


Q ss_pred             -----e--EEE-EeCCcceeEEEccCCC--EE-EEEcCCeEEEEECCCcceEE------eee--------ccceeEEEEE
Q psy6442          75 -----V--QKL-EFGAVPNSLEISRDGT--TI-TVTHGSCVTFLDANSLELIK------EHK--------VPAQVHSASL  129 (231)
Q Consensus        75 -----~--~~~-~~~~~~~~v~~~~~~~--~~-~~~~~~~i~~~d~~~~~~~~------~~~--------~~~~~~~~~~  129 (231)
                           +  .++ .....++++.|.|...  .+ .++.++.+++|+..+.-.+.      ++.        ...+..++++
T Consensus        98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen   98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence                 1  111 2346899999999765  33 34568999999865433222      111        1123334444


Q ss_pred             EecCC-CCEEEEecCC-----CeEEEEeCCCc--c--eeeeccCCCCCeeEEEEcCC-C---CEEEEeeCCCcEEEEeCC
Q psy6442         130 LLNSE-RPIFVCGGED-----LKMYKFDYSTG--A--EIESFKGHFGPIHCVKFSPD-G---ELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       130 ~~~~~-~~~~~~g~~d-----~~i~~~d~~~~--~--~~~~~~~h~~~V~~v~~spd-~---~~laS~s~d~~v~iwd~~  195 (231)
                      ..+.. .+.++.|+.+     ..+++|.....  +  .+.++.+|+.+|++++|.|+ |   ++||+++.|| |+||+++
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence            32222 3456666554     35666655432  2  35678899999999999997 3   5899999999 9999987


Q ss_pred             C
Q psy6442         196 V  196 (231)
Q Consensus       196 ~  196 (231)
                      .
T Consensus       257 ~  257 (361)
T KOG2445|consen  257 V  257 (361)
T ss_pred             e
Confidence            4

>KOG0307|consensus

Probab=99.74  E-value=5e-18  Score=150.79  Aligned_cols=203  Identities=19%  Similarity=0.276  Sum_probs=148.5

Q ss_pred             CCcCCCceeeeccC---C---CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc
Q psy6442           1 MCVDGKPMLRQGDT---G---DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~---g---~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~   74 (231)
                      |.+||+|-||++..   +   ..+.+++.|+|.|..++|++..              +..|++|+.||.|.|||+..-+.
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q--------------~nlLASGa~~geI~iWDlnn~~t  151 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ--------------GNLLASGADDGEILIWDLNKPET  151 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC--------------CceeeccCCCCcEEEeccCCcCC
Confidence            57899999999854   2   3588899999999999999863              44689999999999999976433


Q ss_pred             eEEE---EeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCC-EEEEecC-C--
Q psy6442          75 VQKL---EFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERP-IFVCGGE-D--  144 (231)
Q Consensus        75 ~~~~---~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~-d--  144 (231)
                      -.+.   .....|.+++|...-..++++  ..+...+||++..+.+-.... .....+..+.++|+.. .++.+++ |  
T Consensus       152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~  231 (1049)
T KOG0307|consen  152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA  231 (1049)
T ss_pred             CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence            2221   234578899998877665554  356899999987765443332 2223333344466543 2344433 3  


Q ss_pred             CeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         145 LKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       145 ~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      -.|.+||++. ...++++++|...|.++.|++.+ ++|+|++.|+.|.+|+.++++....+-. .+.|++.+.|-+
T Consensus       232 PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecC
Confidence            3699999975 45678889999999999999976 8999999999999999999998766654 556666665544

>KOG0639|consensus

Probab=99.74  E-value=2.3e-17  Score=135.83  Aligned_cols=176  Identities=25%  Similarity=0.321  Sum_probs=144.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      |+.||+|++||.....+++.|+||++.+.|++++++|               ..|-|++-|.+||-||++.++.+..-.+
T Consensus       527 ccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG---------------tklWTGGlDntvRcWDlregrqlqqhdF  591 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG---------------TKLWTGGLDNTVRCWDLREGRQLQQHDF  591 (705)
T ss_pred             eccCCcEEEEEcccceeeecccCCCCCceeEEecCCC---------------ceeecCCCccceeehhhhhhhhhhhhhh
Confidence            5789999999999999999999999999999999974               4589999999999999999998888888


Q ss_pred             CCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee
Q psy6442          81 GAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE  159 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~  159 (231)
                      ..+++++..+|.+..++++.. +.+.+......+....+-  .....+++.+.+-++.+++.+.|.-+-.|.+.-|..+.
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl--heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCCccceeecc--cccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence            899999999999999998864 455555443332221111  12223444557889999999999999999888887776


Q ss_pred             eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       160 ~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ..+ ...+|.++.+|.|++++++||.|+...||.+
T Consensus       670 qsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  670 QSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            655 5678999999999999999999999999875

>KOG1273|consensus

Probab=99.74  E-value=1.5e-16  Score=124.35  Aligned_cols=180  Identities=14%  Similarity=0.225  Sum_probs=139.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ||.||.|.+||..|-+.-+.|.+|.-+|.+++|+++|.               .|+|+|.|..|++||+..+.++..+.+
T Consensus        41 Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---------------~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   41 GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---------------KLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             eccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---------------EeeeecCCceeEEEeccCCCceeEEEc
Confidence            68899999999999999999999999999999999855               478999999999999999999999999


Q ss_pred             CCcceeEEEccCCCEEE-EE-cC--CeEEEEECCCcceEEeee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          81 GAVPNSLEISRDGTTIT-VT-HG--SCVTFLDANSLELIKEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~-~~-~~--~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      ..++..+.|+|-....+ +. ..  ..+..++-.....+..-. ...........+++.+..+++|...|.+.+++..+-
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            99999999999765432 22 22  233333221111111111 111111112235788999999999999999999888


Q ss_pred             ceeeeccCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         156 AEIESFKGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       156 ~~~~~~~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      +.++.++--. ..|..+.++..|+.|+.-+.|+.||.|+++
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            8877776444 678999999999999999999999999975

>KOG1539|consensus

Probab=99.74  E-value=3.2e-16  Score=135.54  Aligned_cols=139  Identities=19%  Similarity=0.264  Sum_probs=108.3

Q ss_pred             CCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee
Q psy6442          81 GAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE  159 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~  159 (231)
                      +..+..++...-++.++ ++.+|.+.+||......+...+....+..+..  +....+++.+.+|-.|+++|..+.+..+
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~--hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVY--HRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeee--eehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            34455555555444433 34578889999887776666665544443333  4556678888999999999999999999


Q ss_pred             eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442         160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       160 ~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      .|.||.+.|++++|||||+.|++++.|++||+||+-++..+...-  .+.-|.++++.++|-++
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~L  632 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFL  632 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEE
Confidence            999999999999999999999999999999999999998877665  36677888888887654

>KOG0973|consensus

Probab=99.73  E-value=2e-16  Score=140.08  Aligned_cols=184  Identities=18%  Similarity=0.237  Sum_probs=138.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +|.|++|.+|+..+.+++.++++|++.|-.+.|.|-|               ++++|-+.|++|+||++.+......+. 
T Consensus       147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G---------------ky~ASqsdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG---------------KYFASQSDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             ecccceEEEEccccceeeeeeecccccccceEECCcc---------------CeeeeecCCceEEEEEcccceeeEeecc
Confidence            5789999999999999999999999999999999974               558999999999999988766655553 


Q ss_pred             -e-----CCcceeEEEccCCCEEEEEc-----CCeEEEEECCCcceEEeeec-cceeEEEEEEec----CC-------C-
Q psy6442          80 -F-----GAVPNSLEISRDGTTITVTH-----GSCVTFLDANSLELIKEHKV-PAQVHSASLLLN----SE-------R-  135 (231)
Q Consensus        80 -~-----~~~~~~v~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~----~~-------~-  135 (231)
                       +     ......+.|+|||.+++..+     ..++.+.+..+...-..+-. ..++....+.+.    +.       . 
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~  291 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN  291 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence             2     23467889999999987532     24788888766554333222 234444443210    00       1 


Q ss_pred             ---CEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         136 ---PIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       136 ---~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                         .++|+|+.|++|-+|.....+++... +-...+|.+++|+|||..|..||.||+|.+..++....
T Consensus       292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence               16889999999999998766554332 22346899999999999999999999999999866543

>KOG0292|consensus

Probab=99.73  E-value=7.5e-17  Score=140.34  Aligned_cols=162  Identities=15%  Similarity=0.302  Sum_probs=135.7

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-EeCCcceeEEEccCCCEEEEE
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVT   99 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~   99 (231)
                      |..-+.+|-+++|+|.               -..++++--.|.|.+||.+=+.++..+ ++..++..+.|+|++..++.+
T Consensus         5 fEskSsRvKglsFHP~---------------rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSG   69 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPK---------------RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSG   69 (1202)
T ss_pred             hhcccccccceecCCC---------------CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEec
Confidence            4555778889999986               345788888999999999988887665 478899999999998876654


Q ss_pred             c-CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442         100 H-GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       100 ~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      . |-.|++|+-...+++.+...+..... ...+++.-+.++++++|.+|++|+..++.++..+.||...|.|.+|+|...
T Consensus        70 GDDykIkVWnYk~rrclftL~GHlDYVR-t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   70 GDDYKIKVWNYKTRRCLFTLLGHLDYVR-TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             CCccEEEEEecccceehhhhccccceeE-EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence            4 46899999888888777665554332 233588899999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCC
Q psy6442         179 LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~  198 (231)
                      +++|+|-|.+|||||+.--+
T Consensus       149 lIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             eEEEecccceEEEEeecchh
Confidence            99999999999999985443

>KOG4283|consensus

Probab=99.73  E-value=2.8e-16  Score=121.98  Aligned_cols=190  Identities=18%  Similarity=0.288  Sum_probs=135.5

Q ss_pred             CCcCCCceeeeccCCC------eEeeeecccccEEEEE-ECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDTGD------WIGTFEGHKGCVWGVD-INKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~------~i~~l~gH~~~V~~~~-~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      |+.||.+-+||+..-.      +++.   |. ++  +. -++++.+.+-.+.-|.+.+...+.|+|.|.++|+||..+-+
T Consensus        62 Ggadgsi~v~Dl~n~t~~e~s~li~k---~~-c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   62 GGADGSIAVFDLQNATDYEASGLIAK---HK-CI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             cCCCccEEEEEeccccchhhccceeh---ee-ee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            5789999999985432      1211   10 00  10 12233333333333444567889999999999999999988


Q ss_pred             ceEEEEeCCcceeEEEccCCC---EEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCC-EEEEecCCCeE
Q psy6442          74 EVQKLEFGAVPNSLEISRDGT---TITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERP-IFVCGGEDLKM  147 (231)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~d~~i  147 (231)
                      ....+.++..+++-+++|=..   .++++ .+..++++|+.++........+ ..+.++.|  +|... .|++|+.|++|
T Consensus       136 ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W--sp~~e~vLatgsaDg~i  213 (397)
T KOG4283|consen  136 EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW--SPSSEWVLATGSADGAI  213 (397)
T ss_pred             eeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe--ccCceeEEEecCCCceE
Confidence            888888888899888888544   33344 3568999999998877665543 35555555  55444 58899999999


Q ss_pred             EEEeCCCc-ce--------------eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         148 YKFDYSTG-AE--------------IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       148 ~~~d~~~~-~~--------------~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ++||++.- .+              +++-.+|.+.|+.++|+.|+.++++++.|..+++|+..+|+
T Consensus       214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            99998643 11              22234688899999999999999999999999999998886

>KOG1408|consensus

Probab=99.72  E-value=1.9e-16  Score=135.18  Aligned_cols=170  Identities=18%  Similarity=0.277  Sum_probs=133.3

Q ss_pred             ccEEEEEECCCCceeEecccccccc------------------------------CCCEEEEEeCCCCEEEEeCCCCCc-
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAK------------------------------NNTRLISCAEDKTVRLWDVSASAE-   74 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------~~~~l~s~s~D~ti~iwd~~~~~~-   74 (231)
                      -.|.+++.+|+|++|++|..-.+.+                              ..+.|+++|.|+-|.|+|+...-. 
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            3588999999999999986532221                              457799999999999999743100 


Q ss_pred             ----------e------------EEE-------------E---------------eCCcceeEEEccCCCEEE-EEcCCe
Q psy6442          75 ----------V------------QKL-------------E---------------FGAVPNSLEISRDGTTIT-VTHGSC  103 (231)
Q Consensus        75 ----------~------------~~~-------------~---------------~~~~~~~v~~~~~~~~~~-~~~~~~  103 (231)
                                +            +-+             +               -...+++++..|..+.++ +..+..
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence                      0            000             0               013456777888776544 456889


Q ss_pred             EEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEE
Q psy6442         104 VTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYA  181 (231)
Q Consensus       104 i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~la  181 (231)
                      |+++++.+.++.+.++...  .-..+.+..+|.+.++++...|.++-++|..+++++.++.||...|+.+.|++|-+.|+
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence            9999999999998887632  22334455699999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEeCC
Q psy6442         182 SGSEDGTLRLWQTN  195 (231)
Q Consensus       182 S~s~d~~v~iwd~~  195 (231)
                      |.+.||.|.||.+-
T Consensus       700 SvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  700 SVSGDGCIFVWKLP  713 (1080)
T ss_pred             eecCCceEEEEECc
Confidence            99999999999983

>KOG0278|consensus

Probab=99.72  E-value=2.7e-17  Score=124.92  Aligned_cols=195  Identities=20%  Similarity=0.281  Sum_probs=150.2

Q ss_pred             eeecccccEEEEEEC---CCCceeEecccccccc---------------------------CCCEEEEEeCCCCEEEEeC
Q psy6442          20 TFEGHKGCVWGVDIN---KDASKAASGAADFQAK---------------------------NNTRLISCAEDKTVRLWDV   69 (231)
Q Consensus        20 ~l~gH~~~V~~~~~~---~~~~~~~s~~~d~~~~---------------------------~~~~l~s~s~D~ti~iwd~   69 (231)
                      +..||+-+|..++|+   |+|-.|++++.|..+.                           +..+.+|++.|=+.|+||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            458999999999997   5788888887765442                           4466889999999999999


Q ss_pred             CCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcce-EEeeec-cceeEEEEEEecCCCCEEEEecCCCe
Q psy6442          70 SASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLEL-IKEHKV-PAQVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                      -++..+..+++.-.+..++|+.|...++.+ ....++++|++..+. ..++.. +..+....| +. ...++++..+|++
T Consensus        89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w-c~-eD~~iLSSadd~t  166 (334)
T KOG0278|consen   89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW-CH-EDKCILSSADDKT  166 (334)
T ss_pred             hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE-ec-cCceEEeeccCCc
Confidence            999999999999999999999999887765 456778998775443 333333 233444333 23 4445667699999


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      ||+||.+++.++++++ -..+|+++.++++|++|.. +..++|++||..+.......+.=-+.-++++.+..
T Consensus       167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCC
Confidence            9999999999999886 5678999999999987654 45678999999988877766655566666666554

>KOG0639|consensus

Probab=99.72  E-value=2.6e-16  Score=129.66  Aligned_cols=224  Identities=18%  Similarity=0.240  Sum_probs=179.5

Q ss_pred             cCCCceeeeccCC---CeEeeeec--ccccEEEEEECCCCceeEeccccccc----------------------------
Q psy6442           3 VDGKPMLRQGDTG---DWIGTFEG--HKGCVWGVDINKDASKAASGAADFQA----------------------------   49 (231)
Q Consensus         3 ~d~~~~~~~~~~g---~~i~~l~g--H~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------   49 (231)
                      -.|-|++||...-   ..+..|..  -...|.++.+.|||+.|+.|+...++                            
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~  517 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  517 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence            4567899997422   12444432  24578999999999999988763211                            


Q ss_pred             -cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          50 -KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        50 -~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                       .+.+...+|..||.|.|||++....++.++ +..-..++.+++||..+-.+ -|++++-||++....+..+....++..
T Consensus       518 spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfS  597 (705)
T KOG0639|consen  518 SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFS  597 (705)
T ss_pred             CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhee
Confidence             166778899999999999999998888876 45678899999999988765 488999999999988888877766655


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      +.  ..|.+..++.|.+.+.+++.... +..-+.+.-|..-|.++.|++-|++++|.+.|+.+..|..--|..+.+-++.
T Consensus       598 Lg--~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~  674 (705)
T KOG0639|consen  598 LG--YCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES  674 (705)
T ss_pred             cc--cCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc
Confidence            44  47899999999999999888763 3445666679999999999999999999999999999999888888888888


Q ss_pred             CCcccCCCCCCc-------cccccceeeee
Q psy6442         207 EGGLNNSLGLDS-------SGHLNNVHEVI  229 (231)
Q Consensus       207 ~~~~~~~~~~~~-------~~~~~~~~~~~  229 (231)
                      -..+||-|+++.       ..|---||+|+
T Consensus       675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  675 SSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             CcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            899999999886       34466788876

>KOG0270|consensus

Probab=99.71  E-value=9.9e-16  Score=124.30  Aligned_cols=185  Identities=18%  Similarity=0.237  Sum_probs=137.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~   79 (231)
                      +|.|.||.|||..+|++..++.-|.++|.++.|+|.              ....|++||.|++|++.|.+.... -....
T Consensus       262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~--------------~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY--------------EPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC--------------CceEEEeccccceEEeeeccCccccCceEE
Confidence            689999999999999999999999999999999985              356799999999999999985332 34566


Q ss_pred             eCCcceeEEEccCCCEE-EE-EcCCeEEEEECCCc-ceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 FGAVPNSLEISRDGTTI-TV-THGSCVTFLDANSL-ELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~-~~-~~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +...+..++|.|..... ++ ..+|.++.+|.+.. +++.+...+ .++..+++.. ..-.++++++.++.+++|++...
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCC
Confidence            77889999999987643 33 45789999998876 556655543 3555555532 23346888999999999988543


Q ss_pred             c--eeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCee
Q psy6442         156 A--EIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       156 ~--~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .  ......---+...|.++.|+- -.||.|+..+.++|||+.+...+
T Consensus       407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2  222111112346777788875 46788888888999999876543

>KOG1446|consensus

Probab=99.71  E-value=7.5e-15  Score=114.74  Aligned_cols=191  Identities=15%  Similarity=0.142  Sum_probs=151.5

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC--CCCEEEEeCCCCCceEEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE--DKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~--D~ti~iwd~~~~~~~~~~~   79 (231)
                      +.|.+++|++..+|+.+++...+.=.|..+.|....+               .++-++.  |.+||.-++.+.+.++.+.
T Consensus        33 s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---------------~~i~sStk~d~tIryLsl~dNkylRYF~   97 (311)
T KOG1446|consen   33 SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---------------TVIHSSTKEDDTIRYLSLHDNKYLRYFP   97 (311)
T ss_pred             cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---------------eEEEccCCCCCceEEEEeecCceEEEcC
Confidence            6788999999999999999887666677777766532               3344444  8999999999999999986


Q ss_pred             -eCCcceeEEEccCCCEE-EEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc--
Q psy6442          80 -FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG--  155 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~--  155 (231)
                       +...|++++.+|-+..+ ..+.|+++++||++..++...........   ..++|.|.++|.+.....|++||++.-  
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi---~AfDp~GLifA~~~~~~~IkLyD~Rs~dk  174 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI---AAFDPEGLIFALANGSELIKLYDLRSFDK  174 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc---eeECCCCcEEEEecCCCeEEEEEecccCC
Confidence             67789999999977654 45678999999999877766665544321   234999999999988889999999753  


Q ss_pred             ceeeec---cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcc
Q psy6442         156 AEIESF---KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGL  210 (231)
Q Consensus       156 ~~~~~~---~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~  210 (231)
                      .+..++   ..-..+.+.|.|||||..++-+...+.+.+.|.-.|...+.++...++-
T Consensus       175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence            222333   2456789999999999999999999999999999999988888777665

>KOG0306|consensus

Probab=99.70  E-value=1.5e-15  Score=130.23  Aligned_cols=176  Identities=16%  Similarity=0.278  Sum_probs=143.0

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FG   81 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~   81 (231)
                      ..+.+.+|+.+++++++++..  +.+.+..|-|.               +.++++|...|.+.++|+.+...+.+++ +.
T Consensus       392 a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpg---------------d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd  454 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITC--GYILASKFVPG---------------DRYIVLGTKNGELQVFDLASASLVETIRAHD  454 (888)
T ss_pred             CCCcEEEEEccCcceeEEecc--ccEEEEEecCC---------------CceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence            347889999999999999884  48888888886               4568899999999999999988877765 56


Q ss_pred             CcceeEEEccCCCEEE-EEcCCeEEEEECCCc--------ceE-----EeeeccceeEEEEEEecCCCCEEEEecCCCeE
Q psy6442          82 AVPNSLEISRDGTTIT-VTHGSCVTFLDANSL--------ELI-----KEHKVPAQVHSASLLLNSERPIFVCGGEDLKM  147 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  147 (231)
                      ..+.+++.+||+.-++ ++.|.++++||..-.        +.+     +..+.+..+  .++..+|++++++.+--|.++
T Consensus       455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv--L~v~~Spdgk~LaVsLLdnTV  532 (888)
T KOG0306|consen  455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV--LCVSVSPDGKLLAVSLLDNTV  532 (888)
T ss_pred             cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE--EEEEEcCCCcEEEEEeccCeE
Confidence            7889999999998654 567889999984211        111     222333444  445559999999999999999


Q ss_pred             EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         148 YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       148 ~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ++|=+.+-+-.-.+.||+-||.||.+|||+.+++|||.|++|+||-+.-|
T Consensus       533 kVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  533 KVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             EEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence            99988887777788999999999999999999999999999999987544

>KOG0267|consensus

Probab=99.70  E-value=3.9e-17  Score=139.28  Aligned_cols=170  Identities=21%  Similarity=0.280  Sum_probs=143.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.+|+++|||...++.+++|.||...+.+++|+|-+.               +.+++|.|..+++||.+...|..... 
T Consensus        88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~---------------~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE---------------FFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             cccCCceeeeehhhhhhhhhhhccccCcceeeeccceE---------------EeccccccccceehhhhccCceeeecC
Confidence            56899999999999999999999999999999999754               46889999999999999888877765 


Q ss_pred             eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +...+..+.++|+|+++.... +..+.+||...++...+++.+ .++....  ++|..-++++|+.|.++++||+++-+.
T Consensus       153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle--~hp~e~Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE--FHPLEVLLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc--cCchhhhhccCCCCceeeeeccceeEE
Confidence            345678899999999887765 479999999888888777643 3444333  477788899999999999999998888


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      +.........|.+++|+|++..+++|....
T Consensus       231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCccCCceeeeecCCceeeecCchhh
Confidence            887777788999999999999888887654

>KOG0640|consensus

Probab=99.70  E-value=1.7e-15  Score=118.41  Aligned_cols=179  Identities=20%  Similarity=0.290  Sum_probs=142.0

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------CCCEEEEEeCCCCEEE
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------NNTRLISCAEDKTVRL   66 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~~~~l~s~s~D~ti~i   66 (231)
                      ..|++|-.|.+.|..++|+|....|++++.|..+.                             .|..|+.+-..-++++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            46999999999999999999999999999876543                             6778888888899999


Q ss_pred             EeCCCCCceEEE----EeCCcceeEEEccCCCE-EEEEcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEE
Q psy6442          67 WDVSASAEVQKL----EFGAVPNSLEISRDGTT-ITVTHGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        67 wd~~~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (231)
                      ||+.+-+|...-    ++...+++|.+++.++. +..+.++.|++||.-+.++++++.. +.....++..+..+++++++
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            999988776443    23467899999999985 4556799999999988888877654 22333334445788999999


Q ss_pred             ecCCCeEEEEeCCCcceeeec-------------------------------------------------cCCCCCeeEE
Q psy6442         141 GGEDLKMYKFDYSTGAEIESF-------------------------------------------------KGHFGPIHCV  171 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~~~~~~-------------------------------------------------~~h~~~V~~v  171 (231)
                      .+.|..+++|++.++..+.++                                                 .||.++++.+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            999999999998776543321                                                 2577788888


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         172 KFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       172 ~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .-||.+.-+++|+.|..+|+|--
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EeCCCCCceeeecccceeeeeee
Confidence            88888888888888888888853

>KOG0300|consensus

Probab=99.70  E-value=7.4e-16  Score=120.81  Aligned_cols=179  Identities=15%  Similarity=0.280  Sum_probs=143.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEEE-
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKLE-   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~-   79 (231)
                      +-|.+..|||.++|+.+..|.||......+.-+|.               ...++|+|.|.|.++||++..-. +..++ 
T Consensus       291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt---------------QrLVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT---------------QRLVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             eccccceeeeeccCceeccccCcchhccccccCCc---------------ceEEEEeccCceeEeccchhhcceeeeecc
Confidence            55888999999999999999999999888877774               34578999999999999983311 22222 


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcc-eEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE-LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      +...++++.|..+.+.+..+.+.++++||++++. ++.+++...+++.+.+  +..+++++...++..|++||+.- ..+
T Consensus       356 HtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvav--s~g~~iIAiPhDNRqvRlfDlnG-~Rl  432 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAV--SKGHPIIAIPHDNRQVRLFDLNG-NRL  432 (481)
T ss_pred             cccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEe--ecCCceEEeccCCceEEEEecCC-Ccc
Confidence            3467899999999998888889999999998765 5677777777766555  66777899999999999999954 333


Q ss_pred             ee-----ccCCCCCeeEEEEcCCCC--EEEEeeCCCcEEEEeCCCCC
Q psy6442         159 ES-----FKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       159 ~~-----~~~h~~~V~~v~~spd~~--~laS~s~d~~v~iwd~~~~~  198 (231)
                      ..     -.+|...|+|++|..+..  -|.+|+-|+.+.=|++...+
T Consensus       433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            33     358999999999998753  68899999999999987653

>KOG0303|consensus

Probab=99.69  E-value=2.4e-16  Score=126.38  Aligned_cols=153  Identities=19%  Similarity=0.265  Sum_probs=113.0

Q ss_pred             eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE
Q psy6442          20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT   99 (231)
Q Consensus        20 ~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   99 (231)
                      .+.||+++|..++|+|-              ++..|||||.|.+|+||++..+...+.+.  .++..          +.+
T Consensus        76 ~v~GHt~~vLDi~w~Pf--------------nD~vIASgSeD~~v~vW~IPe~~l~~~lt--epvv~----------L~g  129 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF--------------NDCVIASGSEDTKVMVWQIPENGLTRDLT--EPVVE----------LYG  129 (472)
T ss_pred             CccCccccccccccCcc--------------CCceeecCCCCceEEEEECCCcccccCcc--cceEE----------Eee
Confidence            35799999999999984              56789999999999999987654432221  11100          111


Q ss_pred             cCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442         100 HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       100 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      +..                    .+..+.+  +| ...+|++++.|.+|.+|++.+++.+-++. |...|.++.|+.||.
T Consensus       130 H~r--------------------rVg~V~w--HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs  186 (472)
T KOG0303|consen  130 HQR--------------------RVGLVQW--HPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS  186 (472)
T ss_pred             cce--------------------eEEEEee--cccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc
Confidence            111                    1222222  22 23457888999999999999999888887 999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         179 LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      +|++.+.|+.|||||.++++..+.-.++.++-+....|..+|.
T Consensus       187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            9999999999999999999988766666666555555555544

>KOG0642|consensus

Probab=99.68  E-value=3.8e-16  Score=129.98  Aligned_cols=198  Identities=24%  Similarity=0.365  Sum_probs=139.5

Q ss_pred             CCcCCCceeeecc--------CCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------
Q psy6442           1 MCVDGKPMLRQGD--------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~--------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------   50 (231)
                      ++.||++.||.+.        .-+.+-+|.+|.++|.|++..+.+....+|+.|..++                      
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~  391 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT  391 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence            4689999999981        1246888999999999999999999999998886432                      


Q ss_pred             ---------------CCCEEEEEeCCCCEEEEeCCCCCceEEE---EeCCcceeEEEccCCCEEEEEcCCeEEEEECCCc
Q psy6442          51 ---------------NNTRLISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL  112 (231)
Q Consensus        51 ---------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~  112 (231)
                                     ...+|++||.|||+++|....... .++   +-...+.++.+........++ +.....+++.+.
T Consensus       392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~-s~~~~~~~~~~~  469 (577)
T KOG0642|consen  392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA-SFRFGYTSIDDM  469 (577)
T ss_pred             eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh-hcccccccchhh
Confidence                           456799999999999999876655 121   112345566554433211111 111111111111


Q ss_pred             c---eEEeeec---cce---eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEe
Q psy6442         113 E---LIKEHKV---PAQ---VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG  183 (231)
Q Consensus       113 ~---~~~~~~~---~~~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~  183 (231)
                      +   .+..+..   +.+   .....+..++...+..++.++..|+.+|..++.+++....|...++++++.|+|.+|+++
T Consensus       470 ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~  549 (577)
T KOG0642|consen  470 EVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSG  549 (577)
T ss_pred             hhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEee
Confidence            1   1111111   111   111223347788889999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCee
Q psy6442         184 SEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       184 s~d~~v~iwd~~~~~~~  200 (231)
                      +.|+.|++|........
T Consensus       550 s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  550 SHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             cCCceeehhhccchhee
Confidence            99999999998765543

>KOG2106|consensus

Probab=99.68  E-value=1.9e-14  Score=118.82  Aligned_cols=190  Identities=19%  Similarity=0.334  Sum_probs=150.8

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc--------------------------------
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------------   50 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------------   50 (231)
                      .+|++.+|+..+.+..+.-..|.+.|+++..-.+|.++. |+.|..+.                                
T Consensus       265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~  343 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL  343 (626)
T ss_pred             CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence            479999999988888777679999999999999988776 76553211                                


Q ss_pred             -----------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE
Q psy6442          51 -----------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT   95 (231)
Q Consensus        51 -----------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   95 (231)
                                                         +..+++||+.|+++++|+  +.+.+.+.....+..++.|+|.+ .
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~  420 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-V  420 (626)
T ss_pred             EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-e
Confidence                                               556899999999999999  56667777788899999999999 5


Q ss_pred             EEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeec-cCCCCCeeEEE
Q psy6442          96 ITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESF-KGHFGPIHCVK  172 (231)
Q Consensus        96 ~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~-~~h~~~V~~v~  172 (231)
                      ++++ ..+.-.++|..+...+..+....++....+  +|++.++|.|+.|..|++|.+..+ ...... +-|..+|+.+.
T Consensus       421 va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y--sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLD  498 (626)
T KOG2106|consen  421 VAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY--SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLD  498 (626)
T ss_pred             EEEeeccceEEEEecccceeEEEEecCCceEEEEE--cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEee
Confidence            5554 567778889888777777666556655554  899999999999999999988654 333222 22348999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         173 FSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       173 ~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ||+|+++|.+-+.|-.|-.|....-+
T Consensus       499 wS~Ds~~~~~~S~d~eiLyW~~~~~~  524 (626)
T KOG2106|consen  499 WSSDSQFLVSNSGDYEILYWKPSECK  524 (626)
T ss_pred             ecCCCceEEeccCceEEEEEccccCc
Confidence            99999999999999999999654433

>KOG0647|consensus

Probab=99.68  E-value=3.1e-15  Score=116.33  Aligned_cols=160  Identities=14%  Similarity=0.144  Sum_probs=119.9

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEE--EEeCCcceeEEEccCCCEEEE-
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQK--LEFGAVPNSLEISRDGTTITV-   98 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~-   98 (231)
                      .-.+.|..+.|+|..              ...++.+|+|++||+|++.. +....+  ..+..++.+++|+.||..++. 
T Consensus        25 pP~DsIS~l~FSP~~--------------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g   90 (347)
T KOG0647|consen   25 PPEDSISALAFSPQA--------------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSG   90 (347)
T ss_pred             CcccchheeEecccc--------------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEee
Confidence            346788999999842              44577999999999999976 333322  245788999999999998776 


Q ss_pred             EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442          99 THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus        99 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      +.++..++||+.+.+....--...++..+.+.......+|++|++|.+|+.||++...++.+++ -.+.|.++..  -..
T Consensus        91 ~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~p  167 (347)
T KOG0647|consen   91 GCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYP  167 (347)
T ss_pred             ccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCc
Confidence            4689999999998866554444455666666555556789999999999999999888777765 2334544333  245


Q ss_pred             EEEEeeCCCcEEEEeCCCCCe
Q psy6442         179 LYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +++.+..++.|.+|+++++..
T Consensus       168 m~vVata~r~i~vynL~n~~t  188 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPPT  188 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCcc
Confidence            788888899999999977654

>KOG1274|consensus

Probab=99.67  E-value=4.8e-15  Score=129.53  Aligned_cols=181  Identities=17%  Similarity=0.360  Sum_probs=138.9

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEE-eCCcceeEEEccCCCEEEEEc
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISRDGTTITVTH  100 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  100 (231)
                      .|++.-..+.|.|+|               ..|+||+.||.|++|+.-.- +.-.++. .+..+.+++.... .++..+.
T Consensus        11 aht~G~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~   74 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSE   74 (933)
T ss_pred             hccCceEEEEEcCCC---------------CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeec
Confidence            577778889999874               46899999999999987544 3223333 4455555554443 4455566


Q ss_pred             CCeEEEEECCCcc---eEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442         101 GSCVTFLDANSLE---LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG  177 (231)
Q Consensus       101 ~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~  177 (231)
                      ++++..+....+.   .+.++..|.  ..+++  +.+|..++.|++|-.|++.++........+.+|.++|.++.|+|.+
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rftlp~--r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFTLPI--RDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             cceEEEeeCCCCCccceeeeeeccc--eEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            7889888766544   345555544  33444  7889999999999999999999888889999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCeeeeeeccC-------CcccCCCCCCcc-cccc
Q psy6442         178 ELYASGSEDGTLRLWQTNVGKTYGLWKCIE-------GGLNNSLGLDSS-GHLN  223 (231)
Q Consensus       178 ~~laS~s~d~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~  223 (231)
                      .+||+.+.||.|+|||++++.....|+.++       +.+++.++|.+. ||++
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence            999999999999999999999887776654       456677888885 5554

>KOG0294|consensus

Probab=99.67  E-value=8.1e-15  Score=114.64  Aligned_cols=186  Identities=15%  Similarity=0.215  Sum_probs=140.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ||.|.+++++|..+...+..+..|+|.|.++.|.+...             ...|++|+.||.|.+|+..+-.++.++. 
T Consensus        59 GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-------------~shLlS~sdDG~i~iw~~~~W~~~~slK~  125 (362)
T KOG0294|consen   59 GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-------------KSHLLSGSDDGHIIIWRVGSWELLKSLKA  125 (362)
T ss_pred             cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-------------hhheeeecCCCcEEEEEcCCeEEeeeecc
Confidence            58899999999998899999999999999999998532             2258999999999999999988887775 


Q ss_pred             eCCcceeEEEccCCCE-EEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          80 FGAVPNSLEISRDGTT-ITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      +...++.++++|.++. +.++.|..++.|++-+++.-...+.......+.|  .+.+..++.+.. ..|-+|.+.+-...
T Consensus       126 H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w--~~~Gd~F~v~~~-~~i~i~q~d~A~v~  202 (362)
T KOG0294|consen  126 HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW--SPQGDHFVVSGR-NKIDIYQLDNASVF  202 (362)
T ss_pred             cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE--cCCCCEEEEEec-cEEEEEecccHhHh
Confidence            4567999999999996 4567889999999887776555555444444444  688887776654 34566766554443


Q ss_pred             eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..+. ....+.++-|- ++..|++|.+|+.|++||.....+...+.
T Consensus       203 ~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~  246 (362)
T KOG0294|consen  203 REIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL  246 (362)
T ss_pred             hhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee
Confidence            3333 22446666663 45688999999999999998877654443

>KOG4378|consensus

Probab=99.66  E-value=3e-15  Score=123.35  Aligned_cols=201  Identities=15%  Similarity=0.184  Sum_probs=153.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +|..+.|.+||.....+++.|++|+..|.+++.+-.               +.+|++++..|-|.|-.+.++.....+.+
T Consensus        97 gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------DEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------cceeEEeccCCcEEEEecccCccccceec
Confidence            467889999999877778889999999999998864               45689999999999999999877766665


Q ss_pred             C--CcceeEEEccCCCEEE--EEcCCeEEEEECCCcceEEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          81 G--AVPNSLEISRDGTTIT--VTHGSCVTFLDANSLELIKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        81 ~--~~~~~v~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      +  +.+..+.++|..+.++  +++++.+++||.....++.....  ..+...+++. ..+..++++.+.|.+|.+||..+
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs-psne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS-PSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec-CCccceEEEecccceEEEeeccc
Confidence            4  5677899999988654  45779999999887766544322  2334444553 34566788999999999999987


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC-eeeeeeccCCcccCCCCCCcc
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK-TYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      .....++. ...|...|+|+|+|.+|+.|...|.|..||++..+ ++.......+. -..|+|.++
T Consensus       241 ~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s-Vt~vafq~s  304 (673)
T KOG4378|consen  241 QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS-VTRVAFQPS  304 (673)
T ss_pred             ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc-eeEEEeeec
Confidence            66666554 45689999999999999999999999999998655 45444433322 444555544

>KOG0772|consensus

Probab=99.66  E-value=2.5e-15  Score=124.17  Aligned_cols=175  Identities=15%  Similarity=0.237  Sum_probs=129.7

Q ss_pred             CCcCCCceeeeccCC-CeEeeee-----cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc
Q psy6442           1 MCVDGKPMLRQGDTG-DWIGTFE-----GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-~~i~~l~-----gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~   74 (231)
                      ++.||++|+|+++.- +.+..++     |-.-++..+.|+++|+               .+|+|..||+|.+|+......
T Consensus       287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------------~iAagc~DGSIQ~W~~~~~~v  351 (641)
T KOG0772|consen  287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------------LIAAGCLDGSIQIWDKGSRTV  351 (641)
T ss_pred             ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc---------------hhhhcccCCceeeeecCCccc
Confidence            589999999999543 4555554     3334688899999854               478888999999999865433


Q ss_pred             eEEEE----e--CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce-EEee-ec--cceeEEEEEEecCCCCEEEEecC
Q psy6442          75 VQKLE----F--GAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL-IKEH-KV--PAQVHSASLLLNSERPIFVCGGE  143 (231)
Q Consensus        75 ~~~~~----~--~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~~~~g~~  143 (231)
                      ...+.    +  +..+.++.|+++|+.|+. +.++.+++||++..+. +... ..  +.+...+++  +|+.+++++|..
T Consensus       352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F--SPd~kli~TGtS  429 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF--SPDDKLILTGTS  429 (641)
T ss_pred             ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc--CCCceEEEeccc
Confidence            22221    2  247899999999998765 5688999999987553 3221 22  233344444  899999988743


Q ss_pred             ------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         144 ------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       144 ------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                            .+.++.||..+-..++.+.-..+.|..+.|+|.-+.+..++.||+++|+
T Consensus       430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence                  3679999988888888876668889999999998888888889999876

>KOG4328|consensus

Probab=99.65  E-value=2e-15  Score=122.99  Aligned_cols=177  Identities=19%  Similarity=0.248  Sum_probs=126.6

Q ss_pred             CCcCCCceeeeccCC----CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE
Q psy6442           1 MCVDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g----~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~   76 (231)
                      |..-|+|-||+..+.    +-+..+..|+++|.++.|+|.              +..++++.|+||+|+.-|+.......
T Consensus       206 GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~--------------n~s~i~ssSyDGtiR~~D~~~~i~e~  271 (498)
T KOG4328|consen  206 GDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA--------------NTSQIYSSSYDGTIRLQDFEGNISEE  271 (498)
T ss_pred             ccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC--------------ChhheeeeccCceeeeeeecchhhHH
Confidence            456799999998422    235667899999999999985              45679999999999999998764322


Q ss_pred             EEEe---CCcceeEEEccCCCE-EEEEcCCeEEEEECCCcce-EEeeecc-ceeEEEEEEecCCCC-EEEEecCCCeEEE
Q psy6442          77 KLEF---GAVPNSLEISRDGTT-ITVTHGSCVTFLDANSLEL-IKEHKVP-AQVHSASLLLNSERP-IFVCGGEDLKMYK  149 (231)
Q Consensus        77 ~~~~---~~~~~~v~~~~~~~~-~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~d~~i~~  149 (231)
                      .+..   .....++.++.+... +++..-+...+||.+.... ......+ .++.  .+.++|-.+ ++++++.|.+.++
T Consensus       272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~--sv~~NP~~p~~laT~s~D~T~kI  349 (498)
T KOG4328|consen  272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT--SVALNPVCPWFLATASLDQTAKI  349 (498)
T ss_pred             HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc--eeecCCCCchheeecccCcceee
Confidence            2222   123445666666554 4444556889999886554 2222222 1343  344466554 5889999999999


Q ss_pred             EeCCCcc-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         150 FDYSTGA-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       150 ~d~~~~~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ||++.-.     .+.++ .|..+|+++.|||++-.|++.+.|..|||||.
T Consensus       350 WD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  350 WDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            9996521     24444 49999999999999877999999999999998

>KOG1539|consensus

Probab=99.65  E-value=4.4e-15  Score=128.58  Aligned_cols=175  Identities=19%  Similarity=0.348  Sum_probs=145.5

Q ss_pred             CcCCCceeeeccCCCeEeee---ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l---~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ...|.+-+++...|-..++|   ..|.++|.+++...-               ++.++|++.||-+++||...+.....+
T Consensus       467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~---------------n~~~vsa~~~Gilkfw~f~~k~l~~~l  531 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT---------------NRLLVSAGADGILKFWDFKKKVLKKSL  531 (910)
T ss_pred             ccCCeEEEEEcccCeeecccccCccccCceeEEEecCC---------------CceEEEccCcceEEEEecCCcceeeee
Confidence            34688889999999999998   589999999976532               567999999999999999998888888


Q ss_pred             EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          79 EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      .++..+..+..+.....+++ ..+-.|.++|..+.+..+.+.. ..+++..++  +|+++.+++++-|++|++||+.++.
T Consensus       532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~F--S~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTF--SPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEe--CCCCcEEEEeecCCcEEEEeccCcc
Confidence            88877777777766555444 4556899999998888888764 446776665  9999999999999999999999999


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCEEEEeeCC-CcEEEEeC
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGELYASGSED-GTLRLWQT  194 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~laS~s~d-~~v~iwd~  194 (231)
                      ++..+. -..++.++.|||+|.+||++..| .-|.+|--
T Consensus       610 lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  610 LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            987764 45688999999999999999888 66999963

>KOG0650|consensus

Probab=99.65  E-value=3.2e-15  Score=125.50  Aligned_cols=192  Identities=19%  Similarity=0.244  Sum_probs=143.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCce--eEeccc-cc-----------cc-----------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK--AASGAA-DF-----------QA-----------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~--~~s~~~-d~-----------~~-----------------   49 (231)
                      |+.||+||+|...||+++.++. -.+.|.+++|+|.+..  |+.+.. ..           ..                 
T Consensus       418 GsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~  496 (733)
T KOG0650|consen  418 GSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPD  496 (733)
T ss_pred             cCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCc
Confidence            6899999999999999999976 3568999999998753  222211 00           00                 


Q ss_pred             ----------------------------------cCCCEEEEEeCC---CCEEEEeCCCCCceEEE-EeCCcceeEEEcc
Q psy6442          50 ----------------------------------KNNTRLISCAED---KTVRLWDVSASAEVQKL-EFGAVPNSLEISR   91 (231)
Q Consensus        50 ----------------------------------~~~~~l~s~s~D---~ti~iwd~~~~~~~~~~-~~~~~~~~v~~~~   91 (231)
                                                        +.|.+|+|...|   ..|.|.++...+...-+ .....+..+.|+|
T Consensus       497 ~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP  576 (733)
T KOG0650|consen  497 AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP  576 (733)
T ss_pred             ccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC
Confidence                                              055666665554   35667777655443333 2346788999999


Q ss_pred             CCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeE
Q psy6442          92 DGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHC  170 (231)
Q Consensus        92 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~  170 (231)
                      ...+++++....+++||+.....++....... ....++.++.|..++.|+.|.++..||+..+ +..+++.-|...|++
T Consensus       577 s~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~  655 (733)
T KOG0650|consen  577 SKPYLFVATQRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS  655 (733)
T ss_pred             CCceEEEEeccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence            99999999999999999987666554433222 1223455899999999999999999999754 456778889999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         171 VKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       171 v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      |+|++.-.++|||+.|+++.||..
T Consensus       656 Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  656 VAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             hhhccccceeeeecCCCcEEEEee
Confidence            999999999999999999999974

>KOG1274|consensus

Probab=99.65  E-value=2.4e-14  Score=125.24  Aligned_cols=193  Identities=14%  Similarity=0.142  Sum_probs=148.6

Q ss_pred             CCcCCCceeeeccCC-CeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CC
Q psy6442           1 MCVDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~   52 (231)
                      |+.||.||.|+...- +.-.+...|...|.+++..  +.++++++.+-.+.                           ++
T Consensus        31 cgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g  108 (933)
T KOG1274|consen   31 CGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG  108 (933)
T ss_pred             ecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC
Confidence            578999999997655 4444444477788877654  44777776653321                           67


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-------e
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-------Q  123 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-------~  123 (231)
                      ..++.||.|-.||+-+..+......+. +..++.++.++|.+.+++++ .+|.+.+||+.++......+.-.       .
T Consensus       109 ~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s  188 (933)
T KOG1274|consen  109 KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILS  188 (933)
T ss_pred             cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccc
Confidence            899999999999999998887766654 67899999999999998765 68999999999877655443211       1


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      -.+....++|++..++....|..|.+|+....+....+.  -|...+..+.|||.|.|||+++.||.|.|||..
T Consensus       189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            122334568998888888999999999988777766653  244459999999999999999999999999998

>KOG0299|consensus

Probab=99.64  E-value=5.7e-15  Score=120.39  Aligned_cols=166  Identities=16%  Similarity=0.240  Sum_probs=129.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEE-eCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISC-AEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~-s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +|.|.+|++|+.+.-.++.+|-||++.|.+++-..-                .+++|. +.|+|+++|++.....+....
T Consensus       262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r----------------eR~vtVGgrDrT~rlwKi~eesqlifrg  325 (479)
T KOG0299|consen  262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR----------------ERCVTVGGRDRTVRLWKIPEESQLIFRG  325 (479)
T ss_pred             eecCCceEEEehhHhHHHHHHhCCccceeeechhcc----------------cceEEeccccceeEEEeccccceeeeeC
Confidence            478999999999999999999999999999975432                234554 499999999997666555555


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecccee-----------EEEEEEecCCCCEEEEecCCCeEE
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQV-----------HSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ....+.++++-.+..++..+.++.|.+|+....+++.....+.++           ...++..-+...++++|+.+|+++
T Consensus       326 ~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vr  405 (479)
T KOG0299|consen  326 GEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVR  405 (479)
T ss_pred             CCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceE
Confidence            567899999999988888888999999999988887664432111           223344567888999999999999


Q ss_pred             EEeCCCc----ceeeeccCCCCCeeEEEEcCCCCEEEEe
Q psy6442         149 KFDYSTG----AEIESFKGHFGPIHCVKFSPDGELYASG  183 (231)
Q Consensus       149 ~~d~~~~----~~~~~~~~h~~~V~~v~~spd~~~laS~  183 (231)
                      +|-+..+    .++..+. -.+-|++++|+++|..+++|
T Consensus       406 LW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  406 LWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             EEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            9998876    3455554 66789999999999955444

>KOG0269|consensus

Probab=99.64  E-value=2.1e-15  Score=129.66  Aligned_cols=148  Identities=15%  Similarity=0.322  Sum_probs=116.1

Q ss_pred             CCCEEEEEeCCCCEEEEeCCC---CCceEE-EEeCCcceeEEEccCCCEEEE--EcCCeEEEEECCCcceEEeeecc-ce
Q psy6442          51 NNTRLISCAEDKTVRLWDVSA---SAEVQK-LEFGAVPNSLEISRDGTTITV--THGSCVTFLDANSLELIKEHKVP-AQ  123 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~-~~  123 (231)
                      ..+.|+||+..|.|-+||+..   .+.+.. .++...++.+.|++....+++  +.|++|+.||.+......++... ..
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            457899999999999999986   232222 245678899999998776555  45799999999887766665543 23


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +..+.+.+. .+..++++.+.|.+++||++... ....+.+|.++|.++.|+|++.+||||++|+.|+|||....+.
T Consensus       179 iRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  179 IRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             hhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            444555433 46678999999999999998654 4567889999999999999999999999999999999875553

>KOG1188|consensus

Probab=99.63  E-value=3.1e-15  Score=118.03  Aligned_cols=167  Identities=26%  Similarity=0.426  Sum_probs=116.4

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      ..|.|++++..||+.+..+++|.+.+..+.|....             ....+.||+.||+||+||++.......+....
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-------------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-------------SPHGVISCSSDGTVRLWDIRSQAESARISWTQ  114 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCC-------------CCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence            36899999999999999999999999999887531             14458999999999999999876544433222


Q ss_pred             cceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC----CCeEEEEeCCCcce-
Q psy6442          83 VPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE----DLKMYKFDYSTGAE-  157 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----d~~i~~~d~~~~~~-  157 (231)
                      .+        +.                            +.  .++..+....++++|.+    +..+.+||.+..+. 
T Consensus       115 ~~--------~~----------------------------~f--~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~  156 (376)
T KOG1188|consen  115 QS--------GT----------------------------PF--ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL  156 (376)
T ss_pred             CC--------CC----------------------------cc--eEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence            11        00                            01  12222445555666543    56788999987654 


Q ss_pred             eeec-cCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcc--cCCCCCCccc
Q psy6442         158 IESF-KGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGL--NNSLGLDSSG  220 (231)
Q Consensus       158 ~~~~-~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~  220 (231)
                      +..+ +.|...|+++.|+|. .++|+|||-||-|.|||+.....-.-+-.+.|.-  ...|+|.+.+
T Consensus       157 l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  157 LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            5554 789999999999995 6799999999999999997664432222222222  2445555555

>KOG0302|consensus

Probab=99.62  E-value=1.9e-14  Score=115.02  Aligned_cols=173  Identities=20%  Similarity=0.336  Sum_probs=126.7

Q ss_pred             CCceeeeccCCCeE---eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---CceEEE
Q psy6442           5 GKPMLRQGDTGDWI---GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---AEVQKL   78 (231)
Q Consensus         5 ~~~~~~~~~~g~~i---~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---~~~~~~   78 (231)
                      +.++||...+|++.   ..|.+|+..|-.++|+|..              ...++|||.|++|+|||++.+   .++.+.
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE--------------~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE--------------DGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             cceEeeeeccCceeecCccccccccchhhhccCCcc--------------CceEEeeecCceEEEEEecCCCccceeEee
Confidence            46789999888763   3477899999999999864              556999999999999999988   556666


Q ss_pred             EeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcc---eEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy6442          79 EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLE---LIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~  153 (231)
                      .++..++.+.|+..-.+++.+ .++++++||++..+   +++.++.+ .++.++.|.+. +...+++++.|..|.+||+.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~-e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH-EDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc-cCceEEeccCCCcEEEEEee
Confidence            678889999999988755443 46899999988643   45566654 46766666432 45567788889999999984


Q ss_pred             Ccce--------e--------eeccCCC--CCeeEEEEcCC-CCEEEEeeCCCcEEEEe
Q psy6442         154 TGAE--------I--------ESFKGHF--GPIHCVKFSPD-GELYASGSEDGTLRLWQ  193 (231)
Q Consensus       154 ~~~~--------~--------~~~~~h~--~~V~~v~~spd-~~~laS~s~d~~v~iwd  193 (231)
                      .-..        .        +-+--|.  ..|-.|.|+++ .-+|+|.+.|| +.||.
T Consensus       379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            3211        0        1122243  35778899997 45899999999 55654

>KOG0641|consensus

Probab=99.62  E-value=1.7e-13  Score=103.10  Aligned_cols=178  Identities=18%  Similarity=0.268  Sum_probs=125.1

Q ss_pred             eEeeeecccccEEEEEECCCCceeEecccccccc------------------------------------------CCCE
Q psy6442          17 WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------------------NNTR   54 (231)
Q Consensus        17 ~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------------------~~~~   54 (231)
                      .+..|+ .+..|.+++|.|.|.+-+-|+...+.+                                          .++.
T Consensus        25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel  103 (350)
T KOG0641|consen   25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL  103 (350)
T ss_pred             EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence            455555 477899999999999888776543221                                          6789


Q ss_pred             EEEEeCCCCEEEEeCCCCCceE---EEE---eCCcceeEEEcc------------------------------------C
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQ---KLE---FGAVPNSLEISR------------------------------------D   92 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~---~~~---~~~~~~~v~~~~------------------------------------~   92 (231)
                      |+|+|.|++||+..+....+..   .++   +...+..++|-.                                    .
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence            9999999999998654322210   011   112222222211                                    0


Q ss_pred             CCEE---------EE--EcCCeEEEEECCCcceEEeeecc-----ce-eEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          93 GTTI---------TV--THGSCVTFLDANSLELIKEHKVP-----AQ-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        93 ~~~~---------~~--~~~~~i~~~d~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      |..+         ++  +.+.+|++||++-..++......     .+ .-...+..+|.++++++|..|....+||++-+
T Consensus       184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence            1111         12  24568899998876666654321     11 11123345899999999999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ..++.|.-|.+.|.++.|||...++.+|+.|..|++=|++
T Consensus       264 r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  264 RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            9999999999999999999999999999999999999984

>KOG2110|consensus

Probab=99.62  E-value=1.6e-13  Score=109.45  Aligned_cols=170  Identities=16%  Similarity=0.245  Sum_probs=132.4

Q ss_pred             EEEEEeCC--CCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc--ceeEEEEE
Q psy6442          54 RLISCAED--KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP--AQVHSASL  129 (231)
Q Consensus        54 ~l~s~s~D--~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~  129 (231)
                      .+|-.+.+  +.+|+.++..+..+..+.++..+.+|....+  .+++.-...|.++|+++++.+.++..-  .+...+.+
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcccEEEEecccceeehhhhccCCCccceEee
Confidence            44444444  4599999999888888888999999988875  334444455999999999999887542  33333445


Q ss_pred             EecCCCCEEEEec--CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcE-EEEeCCCCCeeee-eec
Q psy6442         130 LLNSERPIFVCGG--EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTL-RLWQTNVGKTYGL-WKC  205 (231)
Q Consensus       130 ~~~~~~~~~~~g~--~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v-~iwd~~~~~~~~~-~~~  205 (231)
                      .++..+..++..+  ..|.|.+||..+-+....+..|.+++-+++|+|+|.+|||||+.|+| |||.+.+|+.... .++
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            4566666666543  34789999998888888899999999999999999999999999996 8999999997655 466


Q ss_pred             cCCcccCCCCCCccccccce
Q psy6442         206 IEGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~  225 (231)
                      +-+.-..+|+|+.++.++.+
T Consensus       216 ~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             ceeeEEEEEEECCCCCeEEE
Confidence            66777788899998887753

>KOG2055|consensus

Probab=99.62  E-value=4.1e-14  Score=115.60  Aligned_cols=205  Identities=12%  Similarity=0.161  Sum_probs=167.6

Q ss_pred             CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCc-eeEeccccc-----------------------------c
Q psy6442           1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADF-----------------------------Q   48 (231)
Q Consensus         1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~-~~~s~~~d~-----------------------------~   48 (231)
                      ++.|+++|++..+  +...++++.--.-+|.+..|.|+|. .+++++...                             .
T Consensus       231 aG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe  310 (514)
T KOG2055|consen  231 AGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFE  310 (514)
T ss_pred             ecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeE
Confidence            5789999999875  3346777665677999999999998 677665421                             0


Q ss_pred             -ccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          49 -AKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        49 -~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                       ..+++.|+..|..|.|.+--..+++.+.++.....+..+.|+.+++.++++ .++.+.+||++...+++++.....+..
T Consensus       311 VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g  390 (514)
T KOG2055|consen  311 VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG  390 (514)
T ss_pred             ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce
Confidence             126789999999999999999999999999999999999999999877665 468999999999999998877776666


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCC------cceeeeccCCCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCCCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYST------GAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTNVGK  198 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~------~~~~~~~~~h~~~V~~v~~spd~~~laS~s--~d~~v~iwd~~~~~  198 (231)
                      .++..+.++.++|+|+..|-+-+||..+      .+++..+..-.-.|++++|+||.++||.||  .+..+|+-.+-+..
T Consensus       391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            6676788999999999999999998643      345666666677899999999999998887  57889999998887


Q ss_pred             eeeeeec
Q psy6442         199 TYGLWKC  205 (231)
Q Consensus       199 ~~~~~~~  205 (231)
                      ++.-|-.
T Consensus       471 VFsNfP~  477 (514)
T KOG2055|consen  471 VFSNFPT  477 (514)
T ss_pred             eeccCCC
Confidence            7766643

>KOG0646|consensus

Probab=99.62  E-value=2.2e-14  Score=117.24  Aligned_cols=161  Identities=17%  Similarity=0.275  Sum_probs=127.4

Q ss_pred             CCcCCCceeeecc---------CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGD---------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~---------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      +|.||.|++|..-         +=+.++.|.+|+-+|..+...+.|             -+.+|+|+|.|.++|+||+..
T Consensus       141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-------------~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-------------TNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC-------------ccceEEEecCCceEEEEEecc
Confidence            5899999999872         224688899999999999887754             257899999999999999999


Q ss_pred             CCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcc---e-------------EEeeec-c--ceeEEEEEEe
Q psy6442          72 SAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLE---L-------------IKEHKV-P--AQVHSASLLL  131 (231)
Q Consensus        72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~---~-------------~~~~~~-~--~~~~~~~~~~  131 (231)
                      +..+.++.++..+.+++.+|....++++. +++|.+.+.....   .             ...+.. .  ..+.+  +..
T Consensus       208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc--Lai  285 (476)
T KOG0646|consen  208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC--LAI  285 (476)
T ss_pred             ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE--EEE
Confidence            99999999999999999999999988864 6777665432211   0             111111 1  13443  445


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD  176 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd  176 (231)
                      +.++.+|++|+.|+.+.+||..+.+.++++...+++|+-+.+.|-
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            889999999999999999999999999888767899999999764

>KOG1538|consensus

Probab=99.61  E-value=6.3e-14  Score=119.35  Aligned_cols=193  Identities=18%  Similarity=0.270  Sum_probs=140.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------------   50 (231)
                      +.+..+.++|.+.|.++.+|+||.+.|++++|+.+|+.+++|+.|..+.                               
T Consensus        30 AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   30 AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence            3567899999999999999999999999999999999999998874321                               


Q ss_pred             ---------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEe----CCcceeEEEccCC
Q psy6442          51 ---------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDG   93 (231)
Q Consensus        51 ---------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~   93 (231)
                                                       +|++++-|-.||||-|-+-.. +....++-    ..++.+++|+|..
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCC
Confidence                                             778888888899998875433 33233332    3578899999864


Q ss_pred             C-----EEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC
Q psy6442          94 T-----TITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP  167 (231)
Q Consensus        94 ~-----~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~  167 (231)
                      .     .+.+. -+.++.++.++....-+.-......  .++...++|.+++.|+.|+.+.+|. +.|-.+.++-....-
T Consensus       189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP--~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~W  265 (1081)
T KOG1538|consen  189 GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDP--CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSW  265 (1081)
T ss_pred             CCCccceEEEEeccceeEEEEecceeecccccCCCCc--hhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccccee
Confidence            3     22222 2345555544332211122222223  3344478899999999999999884 466677776555567


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         168 IHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       168 V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      |++++..|+++.++.|+.||+|..|++....
T Consensus       266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  266 IWTVQAKPNSQYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             EEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence            9999999999999999999999999975443

>KOG1034|consensus

Probab=99.60  E-value=1.2e-14  Score=114.39  Aligned_cols=179  Identities=20%  Similarity=0.347  Sum_probs=123.7

Q ss_pred             CCcCCCceeeeccCCCeEeee---ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l---~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      +|.|..||||+-.++.++..|   .||.+.|.+++|+++|               .+++|||.|.++++|++..++.-..
T Consensus       154 ~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g---------------d~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  154 ASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG---------------DRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             ecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC---------------CeeeccCCcceEEEEecChhHHhhh
Confidence            588999999999999999986   5899999999999974               4689999999999999974432211


Q ss_pred             EEe-----------------------------CCcceeEEEccCCCEEEEEcCCeEEEEECCC-cc-------------e
Q psy6442          78 LEF-----------------------------GAVPNSLEISRDGTTITVTHGSCVTFLDANS-LE-------------L  114 (231)
Q Consensus        78 ~~~-----------------------------~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~-~~-------------~  114 (231)
                      ++.                             ...+.++.|-.+ ..+.-+.++.|..|.... .+             .
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti  297 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTI  297 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceee
Confidence            110                             011112222211 111224567788887521 11             1


Q ss_pred             EEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee--eecc--CCCCCeeEEEEcCCCCEEEEeeCCCcE
Q psy6442         115 IKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI--ESFK--GHFGPIHCVKFSPDGELYASGSEDGTL  189 (231)
Q Consensus       115 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~--~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v  189 (231)
                      +.+++.+. .+-.+.+.+++-++.++.|++.+.+++||++..++.  .++.  .-...|...+||.|+.+|+..++|++|
T Consensus       298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence            22233332 334455667888899999999999999999876542  2222  124578999999999999999999999


Q ss_pred             EEEeCC
Q psy6442         190 RLWQTN  195 (231)
Q Consensus       190 ~iwd~~  195 (231)
                      -=||-.
T Consensus       378 wrwdrv  383 (385)
T KOG1034|consen  378 WRWDRV  383 (385)
T ss_pred             EEEEee
Confidence            888853

>KOG0649|consensus

Probab=99.60  E-value=2e-13  Score=103.66  Aligned_cols=170  Identities=21%  Similarity=0.231  Sum_probs=123.0

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEE-CCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI-NKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~-~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +-|+.++-||+++|+.-++|+||++.|+++.- +.                +..+.|++.||++|+||.++++++..++.
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~----------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA----------------NGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc----------------CcceeecCCCccEEEEeccccceeEEecc
Confidence            57899999999999999999999999999965 32                34589999999999999999999988864


Q ss_pred             CCccee---------EEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          81 GAVPNS---------LEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        81 ~~~~~~---------v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                      ......         .+...+...++++.+..+.+|.++..++...+..+.++.-+.+    ...+++++++...+.-|.
T Consensus       197 yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F----~~d~vl~~G~g~~v~~~~  272 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDF----VDDCVLIGGEGNHVQSYT  272 (325)
T ss_pred             ccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeee----ecceEEEeccccceeeee
Confidence            322222         2333444567777778999999999999888888877766555    445678888888888887


Q ss_pred             CCCcceeeeccCCCCCeeEEEEcCCCCEEEEe-eCCCcEEEE
Q psy6442         152 YSTGAEIESFKGHFGPIHCVKFSPDGELYASG-SEDGTLRLW  192 (231)
Q Consensus       152 ~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~-s~d~~v~iw  192 (231)
                      + .|......+...-...+..++-..-.++|. +....+.|+
T Consensus       273 l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  273 L-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             e-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            6 344333333333345666666665544444 455556665

>KOG2048|consensus

Probab=99.59  E-value=3.1e-13  Score=114.95  Aligned_cols=168  Identities=20%  Similarity=0.337  Sum_probs=129.9

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVHSA  127 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~  127 (231)
                      ..+||.+=.||.|.||+++..-+...+-+   ...+.+++|++.++.+..+.++.|..||+.+.++...+.... .+-+ 
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWs-  115 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWS-  115 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeE-
Confidence            34588888999999999998755444322   356889999998888888889999999999988877766533 3443 


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceee--eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee----
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG----  201 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~--~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~----  201 (231)
                       +..+|.+..++.|++||.++.++...+....  .|...++.|.+++|+|++..+++|+.||.|++||+.++.+..    
T Consensus       116 -iai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~  194 (691)
T KOG2048|consen  116 -IAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM  194 (691)
T ss_pred             -EEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence             3448888999999999988888887776553  355667999999999999999999999999999998777643    


Q ss_pred             ------------eeeccCCcccCCCCCCcccc
Q psy6442         202 ------------LWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       202 ------------~~~~~~~~~~~~~~~~~~~~  221 (231)
                                  .|...+=..+..++-|+.|.
T Consensus       195 ~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~  226 (691)
T KOG2048|consen  195 QLDRLSKREPTIVWSVLFLRDSTIASGDSAGT  226 (691)
T ss_pred             cccccccCCceEEEEEEEeecCcEEEecCCce
Confidence                        45555545555555555553

>KOG0322|consensus

Probab=99.59  E-value=2e-14  Score=110.10  Aligned_cols=139  Identities=23%  Similarity=0.334  Sum_probs=98.5

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEE-----------EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCC--cce--EEe
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKL-----------EFGAVPNSLEISRDGTTITV-THGSCVTFLDANS--LEL--IKE  117 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~--~~~--~~~  117 (231)
                      .|+.|-.+|.+-+||+.++..+..+           .+.+++.++.+.+.-..-+. +.+..+..|..+.  +..  ..+
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            3677788999999999987432222           23456677776654322221 1233455555432  221  112


Q ss_pred             eeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         118 HKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       118 ~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +.... .+....  +.|+++++|++++|++|++|..++..++..++-|.+.|++++|+|+-.++|++|.|+.|.+|++
T Consensus       247 ~~lknpGv~gvr--IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKNPGVSGVR--IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecCCCccceE--EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22211 222233  3899999999999999999999999999999999999999999999999999999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.59  E-value=1.8e-12  Score=107.66  Aligned_cols=185  Identities=28%  Similarity=0.474  Sum_probs=143.9

Q ss_pred             cCCCceeeeccC-CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC-CCCEEEEeCCCCCceEEEE-
Q psy6442           3 VDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE-DKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         3 ~d~~~~~~~~~~-g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~ti~iwd~~~~~~~~~~~-   79 (231)
                      .|+++++|+... +.....+.+|...|..+.|+|++.               .+++++. |+++++|+...+..+..+. 
T Consensus       132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------LLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------EEEecCCCCCceEEEEcCCCceEEeecc
Confidence            488999999887 788899999999999999999854               4566664 9999999999877776665 


Q ss_pred             eCCcceeEEEccCCCEEEE--EcCCeEEEEECCCcceEE-eeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          80 FGAVPNSLEISRDGTTITV--THGSCVTFLDANSLELIK-EHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      +...+..++++|++..+++  ..++.+.+||........ ......... .. .+.+++..+++++.++.+++|+.....
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-SFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-eECCCCCEEEEecCCCcEEEeeecCCC
Confidence            3678899999999873333  467888899877655555 233322221 11 346777788899999999999997655


Q ss_pred             e-eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         157 E-IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       157 ~-~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      . +..+.+|..+|.++.|+|++..+++++.|+.+++|+..+........
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            4 44447889999999999998888889999999999998887665554

>KOG1524|consensus

Probab=99.58  E-value=3.2e-14  Score=118.32  Aligned_cols=183  Identities=19%  Similarity=0.293  Sum_probs=134.5

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.||+.-+.+ +.|+.-+....|.+.|.+-.|+|||.               -|+|++.||.||||.-...-.....+..
T Consensus        82 s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSrsGMLRStl~Q~~  145 (737)
T KOG1524|consen   82 SNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGA---------------GLLTAGEDGVIKIWSRSGMLRSTVVQNE  145 (737)
T ss_pred             cCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCc---------------eeeeecCCceEEEEeccchHHHHHhhcC
Confidence            5677766666 55777677788999999999999853               4899999999999985433222223567


Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF  161 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~  161 (231)
                      ..+++++|.|+...++.+.++.+.+--+.....+-..+.+.. ...++.+++...++++|++|.+.++||- .|..+.+-
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S  223 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS  223 (737)
T ss_pred             ceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecc-cCcccccC
Confidence            789999999999887777777666654443332222232222 2345566899999999999999999996 56667766


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee-ee
Q psy6442         162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL-WK  204 (231)
Q Consensus       162 ~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~-~~  204 (231)
                      ..|..+|++++|.|+ ..++-+|. +++|+=..+.|..+++ |.
T Consensus       224 ~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~GSifnlsWS  265 (737)
T KOG1524|consen  224 AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRVGSIFNLSWS  265 (737)
T ss_pred             Chhccceeeeeeccc-cceeeeee-eeeeecCCCccceEEEEEc
Confidence            779999999999999 66666765 5688777788877765 64

>KOG0303|consensus

Probab=99.58  E-value=2.1e-13  Score=109.73  Aligned_cols=185  Identities=19%  Similarity=0.276  Sum_probs=136.9

Q ss_pred             CCcCCCceeeeccCC-------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ||.|-+|++|.--.+       +.+..|.||+.+|--+.|+|-.              ...|+|+|.|.+|+||++.+++
T Consensus       100 gSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA--------------~NVLlsag~Dn~v~iWnv~tge  165 (472)
T KOG0303|consen  100 GSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA--------------PNVLLSAGSDNTVSIWNVGTGE  165 (472)
T ss_pred             CCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc--------------hhhHhhccCCceEEEEeccCCc
Confidence            689999999997433       3467789999999999999963              4568999999999999999999


Q ss_pred             ceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEe---cCCCeEEE
Q psy6442          74 EVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCG---GEDLKMYK  149 (231)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~~  149 (231)
                      .+.++.++..+.++.|+.+|..++.. .+..|++||.+....+.+-..+.........+-.++.++.+|   ..+..+-+
T Consensus       166 ali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aL  245 (472)
T KOG0303|consen  166 ALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIAL  245 (472)
T ss_pred             eeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceec
Confidence            99888899999999999999988765 578999999999988776533322222222234566655555   23567888


Q ss_pred             EeCCCcc---eeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCee
Q psy6442         150 FDYSTGA---EIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       150 ~d~~~~~---~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~  200 (231)
                      ||...-+   .++++.... .|.-=-|.||..++ +.|-.|+.||-|.+.+..++
T Consensus       246 wdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  246 WDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             cCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence            9875432   234454333 34434577776654 55567999999999988854

>KOG1408|consensus

Probab=99.58  E-value=2.2e-14  Score=122.87  Aligned_cols=221  Identities=17%  Similarity=0.234  Sum_probs=149.1

Q ss_pred             CCcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEecccc----------ccccCCCEEEEEeCCCCEEEEeC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAAD----------FQAKNNTRLISCAEDKTVRLWDV   69 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d----------~~~~~~~~l~s~s~D~ti~iwd~   69 (231)
                      ||.+|.|||++..+-+.+.+|. .|.-.+---..+ +...+.++...          |. .....|...-.|..+.|||+
T Consensus       276 gCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~-q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDv  353 (1080)
T KOG1408|consen  276 GCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS-QPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDV  353 (1080)
T ss_pred             eeccceeeecCcchhhhccccccccccccchhhcc-cccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEec
Confidence            5789999999999888888874 342211100000 01111111111          11 12456777889999999999


Q ss_pred             CCCCce----EEEEeCCcceeE------------EEccCCCEEEEEcCCeEEEEECCCc---ceEEe---------e---
Q psy6442          70 SASAEV----QKLEFGAVPNSL------------EISRDGTTITVTHGSCVTFLDANSL---ELIKE---------H---  118 (231)
Q Consensus        70 ~~~~~~----~~~~~~~~~~~v------------~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~---------~---  118 (231)
                      ++-..+    ..+.+..-+.++            +.-|.+-++.++.+++|++|++...   ...++         +   
T Consensus       354 rD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~  433 (1080)
T KOG1408|consen  354 RDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE  433 (1080)
T ss_pred             cccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence            874332    222222222222            2334555666778999999997641   11100         0   


Q ss_pred             -----------------------eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442         119 -----------------------KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       119 -----------------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp  175 (231)
                                             +....+.+  +..+|+++.|++|...|+++++++.+-+.+..+++|..+|.|+.||.
T Consensus       434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~--~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~  511 (1080)
T KOG1408|consen  434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRA--LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSF  511 (1080)
T ss_pred             cCchhhhhhccCCcccccchhhcCcccceEE--EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecC
Confidence                                   00112333  34589999999999999999999988888888999999999999998


Q ss_pred             C---CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccccceee
Q psy6442         176 D---GELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNVHE  227 (231)
Q Consensus       176 d---~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (231)
                      -   ..+|||+++|+-|+|+|+  ++.+.+.+.+.++.+...++.+-+-.+|++-
T Consensus       512 p~~~~kLLASasrdRlIHV~Dv--~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  512 PVLTNKLLASASRDRLIHVYDV--KRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             chhhhHhhhhccCCceEEEEec--ccccchhhhhcccccceeEEEEeecCCceEE
Confidence            4   469999999999999995  4557778888899999999988777777653

>KOG0290|consensus

Probab=99.58  E-value=1.5e-13  Score=106.63  Aligned_cols=178  Identities=12%  Similarity=0.179  Sum_probs=126.0

Q ss_pred             CCCceeeeccC--CC--eEeee-----ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-
Q psy6442           4 DGKPMLRQGDT--GD--WIGTF-----EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-   73 (231)
Q Consensus         4 d~~~~~~~~~~--g~--~i~~l-----~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-   73 (231)
                      +..+|||....  .+  +.+.|     ..|..++.+++|+.              .+..+|.|+|-|-|..|||+.++. 
T Consensus       120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne--------------~dp~~igtSSiDTTCTiWdie~~~~  185 (364)
T KOG0290|consen  120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE--------------VDPNLIGTSSIDTTCTIWDIETGVS  185 (364)
T ss_pred             cCeEEEEeccCcCCceehhhhhccCcccccCCccccccccc--------------CCcceeEeecccCeEEEEEEeeccc
Confidence            45678888753  22  12222     24556777777765              356779999999999999999872 


Q ss_pred             ---ceEEEEeCCcceeEEEccCCCEEEE--EcCCeEEEEECCCcceEEee-eccc---eeEEEEEEecCCCCEEEEecCC
Q psy6442          74 ---EVQKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDANSLELIKEH-KVPA---QVHSASLLLNSERPIFVCGGED  144 (231)
Q Consensus        74 ---~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~g~~d  144 (231)
                         ..+.+.+...+.+++|...+..+++  +.+|.++++|++..+-...+ +.+.   +...+++. ..+-.++|+-..|
T Consensus       186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn-kqDpnymATf~~d  264 (364)
T KOG0290|consen  186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN-KQDPNYMATFAMD  264 (364)
T ss_pred             cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC-cCCchHHhhhhcC
Confidence               2455678899999999998776665  56899999999876543332 2222   23333331 2233345554444


Q ss_pred             -CeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q psy6442         145 -LKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       145 -~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~  196 (231)
                       ..|.+.|++.. ..+.++.+|.+.|+.++|.|. ...|+||++|-.+-|||+..
T Consensus       265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence             56888898753 567889999999999999996 57999999999999999854

>KOG4378|consensus

Probab=99.57  E-value=1e-13  Score=114.47  Aligned_cols=216  Identities=13%  Similarity=0.157  Sum_probs=147.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccc--cEEEEEECCCCc-eeEecccccccc----------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKG--CVWGVDINKDAS-KAASGAADFQAK----------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~--~V~~~~~~~~~~-~~~s~~~d~~~~----------------------------   50 (231)
                      +.-.++.|||...-+....+..|+.  .++++.|+.... ..++.+.|..++                            
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA   88 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence            3445788999876665555554443  389999987653 222333332111                            


Q ss_pred             -CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeecc--ceeE
Q psy6442          51 -NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVP--AQVH  125 (231)
Q Consensus        51 -~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~--~~~~  125 (231)
                       -..++++++..++|+|||++.+.+.+.+. +...++.|-+.-.+.+++ ++.++.|.+....+.....+++.+  ..+.
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence             23578999999999999999777666654 456788888887776665 456778888887776665555544  2232


Q ss_pred             EEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         126 SASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       126 ~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      -+.+  ++ ...+|.+++++|.+.+||+....++..+ +.|.+|...++|+|.. .+|+|.+.|..|.+||++..+....
T Consensus       169 ll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~  246 (673)
T KOG4378|consen  169 LLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR  246 (673)
T ss_pred             Eeec--ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence            2222  33 3345778899999999999776666554 7899999999999965 5889999999999999998776544


Q ss_pred             eeccCCcccCCCCCCcccc
Q psy6442         203 WKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~  221 (231)
                      +.-  .+--.+++|.++|.
T Consensus       247 l~y--~~Plstvaf~~~G~  263 (673)
T KOG4378|consen  247 LTY--SHPLSTVAFSECGT  263 (673)
T ss_pred             eee--cCCcceeeecCCce
Confidence            431  22223344555444

>KOG1332|consensus

Probab=99.57  E-value=9.9e-14  Score=105.27  Aligned_cols=183  Identities=16%  Similarity=0.190  Sum_probs=126.9

Q ss_pred             CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC--CceE
Q psy6442           1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--AEVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--~~~~   76 (231)
                      ++.||+|.+|.-..|++  +..+..|++.|.+++|.|.+-             +-.|+.++.||+|.|.+....  -...
T Consensus        76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-------------gl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-------------GLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             eecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-------------ceEEEEeeCCCcEEEEEEcCCCCccch
Confidence            57899999999888876  555679999999999999753             456999999999999987654  1222


Q ss_pred             EE--EeCCcceeEEEccC---CC------------EEEEEcCCeEEEEECCCcceEEe--eeccc-eeEEEEEEec--CC
Q psy6442          77 KL--EFGAVPNSLEISRD---GT------------TITVTHGSCVTFLDANSLELIKE--HKVPA-QVHSASLLLN--SE  134 (231)
Q Consensus        77 ~~--~~~~~~~~v~~~~~---~~------------~~~~~~~~~i~~~d~~~~~~~~~--~~~~~-~~~~~~~~~~--~~  134 (231)
                      .+  .+..-+++++|.|.   |.            ++..++|+.+++|+..+..-...  +..+. -++...+.+.  -.
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            22  24567899999886   31            22335688999998776422211  11111 1222233221  12


Q ss_pred             CCEEEEecCCCeEEEEeCCCc-c--eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         135 RPIFVCGGEDLKMYKFDYSTG-A--EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       135 ~~~~~~g~~d~~i~~~d~~~~-~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ...++++++|+++.+|..... +  ....++....++..++||+.|++|+.++.|+.|++|.-..
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            346899999999999976421 1  1122333457899999999999999999999999997543

>KOG2048|consensus

Probab=99.57  E-value=1.2e-12  Score=111.51  Aligned_cols=182  Identities=15%  Similarity=0.144  Sum_probs=144.6

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-   80 (231)
                      +.+|.|.-||+.+++.+..+..-.+.||+++.+|.+               +.++.++.||.+++.+...++......+ 
T Consensus        87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~---------------~~l~IgcddGvl~~~s~~p~~I~~~r~l~  151 (691)
T KOG2048|consen   87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN---------------TILAIGCDDGVLYDFSIGPDKITYKRSLM  151 (691)
T ss_pred             cCCceEEEEecccCceeEEecCCCcceeEEEeCCcc---------------ceEEeecCCceEEEEecCCceEEEEeecc
Confidence            568999999999999999999889999999999974               4577788899777777777665544443 


Q ss_pred             --CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-------ceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          81 --GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-------AQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        81 --~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                        ...+.++.|.|++..++.+ .|+.|++||......+..++.+       .+....++.+- ....+++|...|+|..|
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFW  230 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEE
Confidence              3678999999999977665 5778999999887766643321       12222222223 23358999999999999


Q ss_pred             eCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         151 DYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       151 d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      |...+.+++.+..|.+.|.+++.++++.++.+++.|+.|.-+...+.+.
T Consensus       231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             cccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            9999999999999999999999999999999999999998887766544

>KOG1036|consensus

Probab=99.56  E-value=3.7e-13  Score=105.10  Aligned_cols=156  Identities=17%  Similarity=0.186  Sum_probs=119.3

Q ss_pred             cccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeE
Q psy6442          25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCV  104 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i  104 (231)
                      .+.|.++.|+|.+               +.|+.+++||++++||+........+.++.++.+++|.++...+..+-++.+
T Consensus        13 ~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~v   77 (323)
T KOG1036|consen   13 EDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQV   77 (323)
T ss_pred             hhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceE
Confidence            5678899998753               3466677999999999999888888888999999999997777767779999


Q ss_pred             EEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         105 TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       105 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                      +.+|+........-....++.++..  .+....+++|++|.+|++||.+.......+. ....|.++..+  ++.|+.|+
T Consensus        78 r~~Dln~~~~~~igth~~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~  152 (323)
T KOG1036|consen   78 RRYDLNTGNEDQIGTHDEGIRCIEY--SYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGT  152 (323)
T ss_pred             EEEEecCCcceeeccCCCceEEEEe--eccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEee
Confidence            9999887655433333334444443  4566779999999999999998654455554 23478877665  45788899


Q ss_pred             CCCcEEEEeCCCCCee
Q psy6442         185 EDGTLRLWQTNVGKTY  200 (231)
Q Consensus       185 ~d~~v~iwd~~~~~~~  200 (231)
                      .|..|.+||+++-...
T Consensus       153 ~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEP  168 (323)
T ss_pred             cCceEEEEEcccccch
Confidence            9999999999876653

>KOG2445|consensus

Probab=99.55  E-value=2.4e-13  Score=106.19  Aligned_cols=181  Identities=15%  Similarity=0.247  Sum_probs=126.0

Q ss_pred             CCcCCCceeeecc------CC-C--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGD------TG-D--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~------~g-~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      ||.|+++.+|+-.      .| +  ...+|..-.+.|..+.|.|.-             -+-.|++++.||++|||+.-.
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-------------lGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH-------------LGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh-------------cceEEEEeccCcEEEEEecCC
Confidence            5789999999851      12 2  245577888899999999852             356799999999999998754


Q ss_pred             CCce------EEEE--------eCCcceeEEEccCC---CEEEEEcCC------eEEEEECCCc--ceEEe--e-eccce
Q psy6442          72 SAEV------QKLE--------FGAVPNSLEISRDG---TTITVTHGS------CVTFLDANSL--ELIKE--H-KVPAQ  123 (231)
Q Consensus        72 ~~~~------~~~~--------~~~~~~~v~~~~~~---~~~~~~~~~------~i~~~d~~~~--~~~~~--~-~~~~~  123 (231)
                      -..+      ..++        ......++.|+|..   ..++++.+.      .+.+|.-...  +..+.  . ..+.+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            3221      2222        23456788898754   345666544      6666654332  22222  1 22346


Q ss_pred             eEEEEEEecCC--CCEEEEecCCCeEEEEeCCCc--------------------ceeeeccCCCCCeeEEEEcCCCCEEE
Q psy6442         124 VHSASLLLNSE--RPIFVCGGEDLKMYKFDYSTG--------------------AEIESFKGHFGPIHCVKFSPDGELYA  181 (231)
Q Consensus       124 ~~~~~~~~~~~--~~~~~~g~~d~~i~~~d~~~~--------------------~~~~~~~~h~~~V~~v~~spd~~~la  181 (231)
                      +..+++.++-.  -.++|+++.|| |++|.++.-                    +.+..+..|.++|+.+.|+-.|.+|+
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            77777765433  33688899998 899887520                    13456789999999999999999999


Q ss_pred             EeeCCCcEEEEeCC
Q psy6442         182 SGSEDGTLRLWQTN  195 (231)
Q Consensus       182 S~s~d~~v~iwd~~  195 (231)
                      |.+.||.||+|...
T Consensus       305 StGdDG~VRLWkan  318 (361)
T KOG2445|consen  305 STGDDGCVRLWKAN  318 (361)
T ss_pred             ecCCCceeeehhhh
Confidence            99999999999853

>KOG0650|consensus

Probab=99.55  E-value=3.9e-13  Score=113.16  Aligned_cols=184  Identities=18%  Similarity=0.315  Sum_probs=128.9

Q ss_pred             eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCC--
Q psy6442          17 WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT--   94 (231)
Q Consensus        17 ~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--   94 (231)
                      +--.|+||+|.|.++...|.               +..|++||.||+||||.+.++.|++++++...+.+++|+|...  
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~---------------G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS---------------GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLC  456 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC---------------cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCce
Confidence            33457899999999999886               4568999999999999999999999999999999999999876  


Q ss_pred             EEEEEcCCeEEEEECCCc---------ceE-----------------------------EeeeccceeEEEEEEecCCCC
Q psy6442          95 TITVTHGSCVTFLDANSL---------ELI-----------------------------KEHKVPAQVHSASLLLNSERP  136 (231)
Q Consensus        95 ~~~~~~~~~i~~~d~~~~---------~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~  136 (231)
                      .++++.+.++.+.+..-+         +.+                             ..+..+.++..+.  ++..|.
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt--WHrkGD  534 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT--WHRKGD  534 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee--eecCCc
Confidence            355566666555442211         000                             0011122233333  377888


Q ss_pred             EEEEecCC---CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee-eeeccCCcccC
Q psy6442         137 IFVCGGED---LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG-LWKCIEGGLNN  212 (231)
Q Consensus       137 ~~~~g~~d---~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~  212 (231)
                      .+++...+   ..|.+.++........|..-.+.|-++.|+|...+|..++. ..|||||+..+..+. +.+  +..+.-
T Consensus       535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t--g~kwiS  611 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT--GSKWIS  611 (733)
T ss_pred             eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc--CCeeee
Confidence            88876543   46888998777666667667788999999999888887775 669999997755432 233  233444


Q ss_pred             CCCCCccc
Q psy6442         213 SLGLDSSG  220 (231)
Q Consensus       213 ~~~~~~~~  220 (231)
                      ++++.+.|
T Consensus       612 ~msihp~G  619 (733)
T KOG0650|consen  612 SMSIHPNG  619 (733)
T ss_pred             eeeecCCC
Confidence            44444444

>KOG2919|consensus

Probab=99.54  E-value=4.6e-13  Score=105.38  Aligned_cols=184  Identities=16%  Similarity=0.200  Sum_probs=142.6

Q ss_pred             cCCCceeeeccCCCeEeeeec--cccc---EEEEEECCCCceeEeccc--------------------------------
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEG--HKGC---VWGVDINKDASKAASGAA--------------------------------   45 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~g--H~~~---V~~~~~~~~~~~~~s~~~--------------------------------   45 (231)
                      -|.-+.+|++.||++.++|++  |.+.   -+++.|+|||.++..|-.                                
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            456688999999999999874  6654   467999999998886621                                


Q ss_pred             ---cccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcce-E---
Q psy6442          46 ---DFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLEL-I---  115 (231)
Q Consensus        46 ---d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~-~---  115 (231)
                         .+.+.+.+.++.++...++-|+.-..+.++..+. ++.-|+.++|.++|+.++.+  .+..|..||++.... +   
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence               1223366788899999999998877777766653 56789999999999988865  467899999876432 1   


Q ss_pred             EeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         116 KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      .++... ....+-+...|.+..|++|+.+|.|++||++. +.....+..|...|+.++++|--.++|+++..+
T Consensus       291 ~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  291 ERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             hhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            222211 22334567789999999999999999999987 677788888999999999999988999988643

>KOG0771|consensus

Probab=99.54  E-value=1.3e-13  Score=111.45  Aligned_cols=181  Identities=22%  Similarity=0.238  Sum_probs=131.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.||++|+|+-.....+.....|.+.|-.++|+|||+               .|++.+.| ..+||+..++.++.... 
T Consensus       162 gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk---------------~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  162 GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK---------------FLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc---------------EEEEecCC-ceEEEEeccCchhhhcCC
Confidence            47899999999666777777889999999999999854               57888889 99999999996665543 


Q ss_pred             e--CCcceeEEEccCC---CE-EEEE--cCCeEEEEECCCcce---EEeeec-cceeEEEEEEecCCCCEEEEecCCCeE
Q psy6442          80 F--GAVPNSLEISRDG---TT-ITVT--HGSCVTFLDANSLEL---IKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKM  147 (231)
Q Consensus        80 ~--~~~~~~v~~~~~~---~~-~~~~--~~~~i~~~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i  147 (231)
                      .  +.....+.|+.|.   .. +++.  ..+.++.+++.....   ++..+. .......++..+.++++++.|+.++.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            2  2344566777665   22 2222  234555555432211   111111 111122345568999999999999999


Q ss_pred             EEEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         148 YKFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       148 ~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      -+++..+-+.++.. +.|...|+.+.|+||.+++++-+.|.+++|..+...
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            99999887766554 689999999999999999999999999999987653

>KOG2055|consensus

Probab=99.53  E-value=8.3e-13  Score=108.06  Aligned_cols=168  Identities=18%  Similarity=0.299  Sum_probs=133.8

Q ss_pred             cccEEEEEECCCCceeEecccccccc-----------------------------CCC-EEEEEeCCCCEEEEeCCCCCc
Q psy6442          25 KGCVWGVDINKDASKAASGAADFQAK-----------------------------NNT-RLISCAEDKTVRLWDVSASAE   74 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~~~-~l~s~s~D~ti~iwd~~~~~~   74 (231)
                      .+.|.++.|+|....+++++.|..++                             +|. ++++++.-+-+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            46899999999999999998875443                             555 788888888899999987665


Q ss_pred             eEEEEe----CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          75 VQKLEF----GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        75 ~~~~~~----~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ...-..    ...+....+++++++++. +..+.|.+.-..+.+.+..++.+..+...++  +.++..++..+.+|.|++
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~f--sSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTF--SSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEE--ecCCcEEEEEcCCceEEE
Confidence            432221    224567778999997665 5678999999888888888888887777666  577788888888999999


Q ss_pred             EeCCCcceeeeccCCCCCe--eEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         150 FDYSTGAEIESFKGHFGPI--HCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V--~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ||+++...++.+. ..+.|  ++++.|+++.+||+||..|.|.|||..
T Consensus       371 ~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  371 WNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             EecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            9999998888886 23344  567888999999999999999999953

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.5e-12  Score=111.25  Aligned_cols=193  Identities=14%  Similarity=0.082  Sum_probs=120.5

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC---CCCEEEEeCCCCCceEEEEe
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE---DKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~---D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +.++++|+.+ |.....+..|.+.|.+..|+|+|+.+               +.++.   +.+|++||+.+++.......
T Consensus       183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~l---------------a~~s~~~~~~~i~i~dl~tg~~~~l~~~  246 (429)
T PRK01742        183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKL---------------AYVSFENKKSQLVVHDLRSGARKVVASF  246 (429)
T ss_pred             eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEE---------------EEEEecCCCcEEEEEeCCCCceEEEecC
Confidence            5789999965 55567788899999999999997654               44433   34799999988765433334


Q ss_pred             CCcceeEEEccCCCEEEEE--cCCeE--EEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEec-CCCeEEEEeC--C
Q psy6442          81 GAVPNSLEISRDGTTITVT--HGSCV--TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGG-EDLKMYKFDY--S  153 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~--~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~~~d~--~  153 (231)
                      .......+|+||++.++..  .++.+  .++|.......+..........  ..++|++..++..+ .++...+|++  .
T Consensus       247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~--~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTE--PSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCC--EEECCCCCEEEEEECCCCCceEEEEECC
Confidence            4445578999999977653  34544  4456655443332222222222  34488888766554 4565555554  3


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      .+. ...+ .+..  ...+|+|||++|+..+.++ +.+||+.+++...+....   .....+|.++|++
T Consensus       325 ~~~-~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~  385 (429)
T PRK01742        325 GGG-ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIM  385 (429)
T ss_pred             CCC-eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCE
Confidence            332 2222 3433  4578999999998888765 556999988754332221   1234456666654

>KOG2111|consensus

Probab=99.51  E-value=1e-11  Score=97.58  Aligned_cols=171  Identities=15%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEEEeCCc
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAV   83 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~~~~~   83 (231)
                      .+|++||....+++.+|. -..+|.++.+.++                 +|+.. ....|.+|...+ -+.++.++....
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~-----------------riVvv-l~~~I~VytF~~n~k~l~~~et~~N  135 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD-----------------RIVVV-LENKIYVYTFPDNPKLLHVIETRSN  135 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC-----------------eEEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence            579999988888888877 5788999998875                 34433 467899999874 455555555444


Q ss_pred             ceeE-EEccCCC-EEEEE---cCCeEEEEECCCcce--EEeeecc-ceeEEEEEEecCCCCEEEEecCCCe-EEEEeCCC
Q psy6442          84 PNSL-EISRDGT-TITVT---HGSCVTFLDANSLEL--IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLK-MYKFDYST  154 (231)
Q Consensus        84 ~~~v-~~~~~~~-~~~~~---~~~~i~~~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~-i~~~d~~~  154 (231)
                      |..+ +.+|... .+++.   .-|.+.+.|+...+.  ...+..+ ..+.  ++..+..|.++|+++..|+ ||+||..+
T Consensus       136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia--cv~Ln~~Gt~vATaStkGTLIRIFdt~~  213 (346)
T KOG2111|consen  136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIA--CVALNLQGTLVATASTKGTLIRIFDTED  213 (346)
T ss_pred             CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCcee--EEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence            4433 3344332 33332   237888888765544  2223322 2333  3445889999999999998 89999999


Q ss_pred             cceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         155 GAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       155 ~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ++++.++..  ..+.|.+++|||+..+||.+|+.|||+||.++.
T Consensus       214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999998852  347899999999999999999999999999865

>KOG1007|consensus

Probab=99.50  E-value=7.9e-13  Score=102.67  Aligned_cols=164  Identities=21%  Similarity=0.321  Sum_probs=122.3

Q ss_pred             CeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEEEe------CCcceeE
Q psy6442          16 DWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKLEF------GAVPNSL   87 (231)
Q Consensus        16 ~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~~------~~~~~~v   87 (231)
                      ++++.|. .|-|+|.++.|.|++.+               +++.. |..|.+|++..... +..+..      ....++-
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~k---------------lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg  176 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDK---------------LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG  176 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCe---------------eEEec-cCceEEEEcccCcchheeecccccccccceeccc
Confidence            3455554 67789999999997655               44443 88999999987655 333322      1234566


Q ss_pred             EEcc--CCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCc-ceeeeccC
Q psy6442          88 EISR--DGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTG-AEIESFKG  163 (231)
Q Consensus        88 ~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~-~~~~~~~~  163 (231)
                      +|+|  ++..+.+..++++..||.++++....++....-....+.++|+.+ .++++++|+.|++||++.. .++.++.+
T Consensus       177 ~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~  256 (370)
T KOG1007|consen  177 AWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG  256 (370)
T ss_pred             ccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence            7887  678888899999999999988776665443222223344566655 5789999999999999754 56889999


Q ss_pred             CCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCC
Q psy6442         164 HFGPIHCVKFSPD-GELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       164 h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~  195 (231)
                      |.--|++|.|+|. .+++.|++.|..|.+|...
T Consensus       257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            9999999999996 5789999999999999874

>KOG0649|consensus

Probab=99.50  E-value=6.8e-13  Score=100.81  Aligned_cols=164  Identities=18%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---------C-ceEE-EEeCCcceeEEEccCCC
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---------A-EVQK-LEFGAVPNSLEISRDGT   94 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---------~-~~~~-~~~~~~~~~v~~~~~~~   94 (231)
                      .+|++-+++|.               +++|+.++.+|+|-+..+.+-         + .+.. -.++.+++.+++..  .
T Consensus        11 ~tvf~qa~sp~---------------~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~   73 (325)
T KOG0649|consen   11 NTVFAQAISPS---------------KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D   73 (325)
T ss_pred             HHHHHHhhCCc---------------ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h
Confidence            45666677775               445788899999999987531         1 1111 12456788888883  3


Q ss_pred             EEEEEcCCeEEEEECCCcce------EEeeec-------cc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442          95 TITVTHGSCVTFLDANSLEL------IKEHKV-------PA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        95 ~~~~~~~~~i~~~d~~~~~~------~~~~~~-------~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~  160 (231)
                      .++.+.++.++=|..+....      +.+...       +. +++++.  ..|...-++.++.|+.++.||+++|+...+
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~--ldP~enSi~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMW--LDPSENSILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeE--eccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence            45555668887766543222      111111       11 234433  355544455666899999999999999999


Q ss_pred             ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      +.||++.|+++.--.....+.||++||++||||.+++|-.+..+.+.+
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~  199 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN  199 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC
Confidence            999999999999866666788999999999999999998876655443

>KOG1034|consensus

Probab=99.49  E-value=1.5e-12  Score=102.61  Aligned_cols=167  Identities=17%  Similarity=0.268  Sum_probs=114.8

Q ss_pred             ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE------eCCcceeEEEccCCC-
Q psy6442          22 EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE------FGAVPNSLEISRDGT-   94 (231)
Q Consensus        22 ~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~-   94 (231)
                      .+|..+|+.++|++=..          ....+.++|+|. ..+.+|......-.+.++      .+...+.++|+.+-. 
T Consensus        35 ed~~~~I~gv~fN~~~~----------~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~  103 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLG----------CDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT  103 (385)
T ss_pred             ccCCCccceeeeehhcC----------CCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence            47889999999984110          011233444443 345555543322222222      234567888876543 


Q ss_pred             ---EEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeee---ccCCC
Q psy6442          95 ---TITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIES---FKGHF  165 (231)
Q Consensus        95 ---~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~---~~~h~  165 (231)
                         ++++ +.-+.|++.|....+....+.... .++.+..  .| +.+++++++.|..|++|+..+..++..   ++||.
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr  181 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR  181 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence               2333 345789999998887776665543 4444444  34 446788999999999999999988765   47899


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       166 ~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      +.|.++.|+++|.+++||+.|-+|++|++...+...
T Consensus       182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~  217 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN  217 (385)
T ss_pred             CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence            999999999999999999999999999998665443

>KOG2919|consensus

Probab=99.49  E-value=2e-12  Score=101.86  Aligned_cols=148  Identities=15%  Similarity=0.277  Sum_probs=112.0

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEe---C---CcceeEEEccCCCEEEEEcCCeEEEEECC-CcceEEe-----e
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEF---G---AVPNSLEISRDGTTITVTHGSCVTFLDAN-SLELIKE-----H  118 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~---~~~~~v~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~-----~  118 (231)
                      +...+++.+.|.-|++||..+++.......   .   ....+++|+|||..++++..++|+++|+. ++..-..     .
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence            345678889999999999999987655532   2   23569999999999999999999999984 3322111     1


Q ss_pred             -eccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCC
Q psy6442         119 -KVPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE-DGTLRLWQTN  195 (231)
Q Consensus       119 -~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~-d~~v~iwd~~  195 (231)
                       +....-...++.++|... +++.|+...++-++.-..+.++..+-+|.+-|+.+.|.++|+.|.+|++ |..|-.||++
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence             111222233455566655 7889988888777777677888888999999999999999999999985 7789999996


Q ss_pred             CCC
Q psy6442         196 VGK  198 (231)
Q Consensus       196 ~~~  198 (231)
                      .-+
T Consensus       282 ~~~  284 (406)
T KOG2919|consen  282 YSR  284 (406)
T ss_pred             hcc
Confidence            544

>KOG1063|consensus

Probab=99.48  E-value=1.7e-12  Score=110.92  Aligned_cols=182  Identities=14%  Similarity=0.198  Sum_probs=129.5

Q ss_pred             CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC------
Q psy6442           2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA------   73 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~------   73 (231)
                      +.+-.+.+.+..+++  .++.|+||.+.|.+++|+..+.            +...|+|+|.|+.||||.+.-+.      
T Consensus       166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------~~~~laS~SQD~yIRiW~i~~~~~~~~~~  233 (764)
T KOG1063|consen  166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------DDLLLASSSQDRYIRIWRIVLGDDEDSNE  233 (764)
T ss_pred             CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------CcEEEEecCCceEEEEEEEEecCCccccc
Confidence            445555566554443  4777999999999999987542            34569999999999999864222      


Q ss_pred             ---------------ceEEEE-----------eCCcceeEEEccCCC-EEEEEcCCeEEEEECCCcceEEee--ec---c
Q psy6442          74 ---------------EVQKLE-----------FGAVPNSLEISRDGT-TITVTHGSCVTFLDANSLELIKEH--KV---P  121 (231)
Q Consensus        74 ---------------~~~~~~-----------~~~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~--~~---~  121 (231)
                                     ...++.           +...++++.|+|++. .+.++.|.++.+|...+..-+..-  +.   .
T Consensus       234 ~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g  313 (764)
T KOG1063|consen  234 REDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG  313 (764)
T ss_pred             cccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc
Confidence                           111111           346789999999995 566678899999987654322221  11   1


Q ss_pred             -ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc---ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         122 -AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG---AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~---~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                       .........+++++.++++-+..|-.++|-.+..   .......||.+.|.+++|+|.|.+|.|++.|.|-|||-.-
T Consensus       314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence             1111233445888888999899999999973322   2234457999999999999999999999999999999765

>KOG2096|consensus

Probab=99.46  E-value=3.5e-12  Score=100.32  Aligned_cols=175  Identities=16%  Similarity=0.241  Sum_probs=125.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC---CCC---c
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS---ASA---E   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~---~~~---~   74 (231)
                      ++.|-++-||+++ |+++.+..--+..-+..+.+|+|               ..|++++.---|++|.+-   +|+   .
T Consensus       205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G---------------RFia~~gFTpDVkVwE~~f~kdG~fqev  268 (420)
T KOG2096|consen  205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG---------------RFIAVSGFTPDVKVWEPIFTKDGTFQEV  268 (420)
T ss_pred             ecCCCcEEEEecC-CceeeeeccccccccceeeCCCC---------------cEEEEecCCCCceEEEEEeccCcchhhh
Confidence            4788999999988 99999876656666677788875               457888888889999863   221   1


Q ss_pred             eEEEE---eCCcceeEEEccCCCEE-EEEcCCeEEEEECCC-------cceEEeeecc---ceeEEEEEEecCCCCEEEE
Q psy6442          75 VQKLE---FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANS-------LELIKEHKVP---AQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        75 ~~~~~---~~~~~~~v~~~~~~~~~-~~~~~~~i~~~d~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  140 (231)
                      .+.++   +...+..++|+++...+ .++.++..++||..-       ...+++...+   .....+.+..+|.++.++.
T Consensus       269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence            22233   34678999999998764 568899999999752       1122221111   1122234555888887766


Q ss_pred             ecCCCeEEEEeCCCcceeeecc-CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         141 GGEDLKMYKFDYSTGAEIESFK-GHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~~~~~~~-~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      . ....++++..++++...+++ .|...|.+++|+|+|++++||+ |+.++++.
T Consensus       349 s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  349 S-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             e-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            4 45678888888888777774 6899999999999999999988 67788876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=2.6e-11  Score=92.55  Aligned_cols=159  Identities=16%  Similarity=0.245  Sum_probs=103.9

Q ss_pred             EEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEEEe--CCcceeEEEccCCCEEEEEc---CCe
Q psy6442          30 GVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKLEF--GAVPNSLEISRDGTTITVTH---GSC  103 (231)
Q Consensus        30 ~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~---~~~  103 (231)
                      .+.|+++|+.++.-........++..+     +...+|.++. +.....+.+  ..++.+++|+|++..+++..   ...
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~-----~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYY-----GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEE-----eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            567888887665332211111122222     3345555532 233444444  34699999999999876543   358


Q ss_pred             EEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE
Q psy6442         104 VTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY  180 (231)
Q Consensus       104 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l  180 (231)
                      +.+||.. .+.+..+.. ...+.+  .++|+|++++.++.   .|.+.+||..+.+.+.+++ |. .+..++|||||++|
T Consensus        85 v~lyd~~-~~~i~~~~~-~~~n~i--~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFGT-QPRNTI--SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYL  158 (194)
T ss_pred             cEEEcCc-ccEeEeecC-CCceEE--EECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEE
Confidence            9999986 344444332 233444  45899999988764   4679999999888887765 33 47899999999999


Q ss_pred             EEeeC------CCcEEEEeCCCCCee
Q psy6442         181 ASGSE------DGTLRLWQTNVGKTY  200 (231)
Q Consensus       181 aS~s~------d~~v~iwd~~~~~~~  200 (231)
                      +++..      |+.++||+.. |+.+
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             EEEEeccceeccccEEEEEec-CeEe
Confidence            99874      7889999984 5543

>KOG2110|consensus

Probab=99.46  E-value=3.7e-11  Score=96.15  Aligned_cols=144  Identities=18%  Similarity=0.340  Sum_probs=111.2

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-Ccce-eEEEccCC--CEEEEE---cCCeEEEEECCCcceEEeeeccc-
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPN-SLEISRDG--TTITVT---HGSCVTFLDANSLELIKEHKVPA-  122 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~-~v~~~~~~--~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~-  122 (231)
                      +-++|+.+=.+. |.|||+++.+.+.++... +.+. .++++|+.  .+++..   ..+.+.+||..+.+....+..+. 
T Consensus        96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~  174 (391)
T KOG2110|consen   96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG  174 (391)
T ss_pred             ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence            345788887765 999999999998888653 4443 44555544  455542   34789999998887777766543 


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCe-EEEEeCCCcceeeeccCC--CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLK-MYKFDYSTGAEIESFKGH--FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~-i~~~d~~~~~~~~~~~~h--~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      .+  .++.++++|.++|++++.|+ ||+|.+.+|+.+.+|..-  ...|.+++|+|++++|++.|..++|+||.+...
T Consensus       175 ~l--Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  175 PL--AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ce--eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            33  34556999999999999998 889999999999998633  245789999999999999999999999998654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.3e-11  Score=101.26  Aligned_cols=198  Identities=13%  Similarity=0.070  Sum_probs=126.4

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN   85 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~   85 (231)
                      ++++++.+ |...+.+..+.+.+.+..|+|||+.++..+            ..+.+..+.+||+.+++......+.....
T Consensus       180 ~l~~~d~d-g~~~~~lt~~~~~~~~p~wSPDG~~la~~s------------~~~g~~~i~i~dl~~G~~~~l~~~~~~~~  246 (429)
T PRK03629        180 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVT------------FESGRSALVIQTLANGAVRQVASFPRHNG  246 (429)
T ss_pred             eEEEEcCC-CCCCEEeecCCCceeeeEEcCCCCEEEEEE------------ecCCCcEEEEEECCCCCeEEccCCCCCcC
Confidence            57788755 555555666778899999999987654211            01224578899998876544444455556


Q ss_pred             eEEEccCCCEEEEE--cC--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC-C--eEEEEeCCCccee
Q psy6442          86 SLEISRDGTTITVT--HG--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED-L--KMYKFDYSTGAEI  158 (231)
Q Consensus        86 ~v~~~~~~~~~~~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~--~i~~~d~~~~~~~  158 (231)
                      ...|+||++.++..  .+  ..|.+||..+....+....+....  ...++|+++.++..+.+ +  .|+.+|+..+.. 
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~--~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-  323 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT--EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-  323 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC--ceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence            78999999987653  22  258889987765544333332222  33458899887766543 2  577778766543 


Q ss_pred             eeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ..+..+........|||||++|+..+.+   ..|.+||+.+++...+ +..  ......+|.++|.+
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~~--~~~~~p~~SpDG~~  387 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TDT--FLDETPSIAPNGTM  387 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe-CCC--CCCCCceECCCCCE
Confidence            3333344456678999999988876643   3588899988875533 221  12234556666654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.44  E-value=5.6e-11  Score=98.18  Aligned_cols=177  Identities=12%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             CcCCCceeeeccC-CC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCc--e
Q psy6442           2 CVDGKPMLRQGDT-GD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAE--V   75 (231)
Q Consensus         2 ~~d~~~~~~~~~~-g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~--~   75 (231)
                      +.|+.|++|+..+ |+  ++.++. +.+....+.++|+++.+              ++++..++.|.+|++.. ++.  .
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~l--------------yv~~~~~~~i~~~~~~~~g~l~~~   73 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHL--------------YVGVRPEFRVLSYRIADDGALTFA   73 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEE--------------EEEECCCCcEEEEEECCCCceEEe
Confidence            4688999999853 54  566665 34556778899986654              23334578899999863 332  2


Q ss_pred             EEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc----eEEeeeccceeEEEEEEecCCCCEEE-EecCCCeEE
Q psy6442          76 QKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE----LIKEHKVPAQVHSASLLLNSERPIFV-CGGEDLKMY  148 (231)
Q Consensus        76 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~  148 (231)
                      ........+..++++|+++.++++.  ++.+.+|+.....    .+.........+.+  ..+|+++.+. +...+..|+
T Consensus        74 ~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~p~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         74 AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSA--NIDPDNRTLWVPCLKEDRIR  151 (330)
T ss_pred             eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEe--EeCCCCCEEEEeeCCCCEEE
Confidence            2233445678999999999888764  5788999876322    12222111223333  3478887765 455668999


Q ss_pred             EEeCCCcceee-------eccCCCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q psy6442         149 KFDYSTGAEIE-------SFKGHFGPIHCVKFSPDGELYASGSE-DGTLRLWQTNV  196 (231)
Q Consensus       149 ~~d~~~~~~~~-------~~~~h~~~V~~v~~spd~~~laS~s~-d~~v~iwd~~~  196 (231)
                      +||+.+...+.       .... ......++|+|+++++.++.+ +++|.+|++..
T Consensus       152 v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             EEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            99997632221       1111 234578999999998877765 99999999973

>KOG4328|consensus

Probab=99.44  E-value=3.1e-12  Score=104.68  Aligned_cols=174  Identities=14%  Similarity=0.143  Sum_probs=122.6

Q ss_pred             CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc----eEE-EEeCCcceeEE
Q psy6442          14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE----VQK-LEFGAVPNSLE   88 (231)
Q Consensus        14 ~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~----~~~-~~~~~~~~~v~   88 (231)
                      +-+.....+-|.++|+++.|+|-.+             -+.+++|..-|+|-+||+...+.    +.. ..+..+|.++.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~  241 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK  241 (498)
T ss_pred             cceecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE
Confidence            3344556778999999999999642             25688999999999999963221    112 23456799999


Q ss_pred             EccCCC--EEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eeeeccCC
Q psy6442          89 ISRDGT--TITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGH  164 (231)
Q Consensus        89 ~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h  164 (231)
                      |+|...  .+..+.+|+|++.|......-...... .......+.++.+...++.+..=|...+||+++.. ....+.-|
T Consensus       242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh  321 (498)
T KOG4328|consen  242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH  321 (498)
T ss_pred             ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence            999764  455678999999987654322212211 12222334445666666776666688899998654 36667779


Q ss_pred             CCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         165 FGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       165 ~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ...|++|+++|. ..+||||+.|++++|||++.-...
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K  358 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK  358 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence            899999999996 568999999999999998765543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=2.6e-10  Score=95.36  Aligned_cols=187  Identities=21%  Similarity=0.305  Sum_probs=128.9

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .+|+|.+.|..+.+.+.++..+...-..+.|+|||+               +++.++.|+.|-++|+.+++.+.++..+.
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------~~yv~~rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------YLYVANRDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------EEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------EEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence            578999999999999999886544433467888754               46777899999999999999999999999


Q ss_pred             cceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc------eeEEEEEEecCCCCEE-EEecCCCeEEEEeCC
Q psy6442          83 VPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA------QVHSASLLLNSERPIF-VCGGEDLKMYKFDYS  153 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~  153 (231)
                      .+..+++++||+.+++++  .+.+.++|..+.+.++.+....      ......+...+....+ ++--+.+.|++.|..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            999999999999988764  5899999999998888765421      1122233345666644 444556899999976


Q ss_pred             Ccceee-eccCCCCCeeEEEEcCCCCEEEE-eeCCCcEEEEeCCCCCeeeeee
Q psy6442         154 TGAEIE-SFKGHFGPIHCVKFSPDGELYAS-GSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       154 ~~~~~~-~~~~h~~~V~~v~~spd~~~laS-~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ....+. +............|+|++++++. +-..+.|-++|..+++......
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            654332 22224456788999999997655 4567789999999988776553

...

>KOG1063|consensus

Probab=99.43  E-value=2.7e-12  Score=109.61  Aligned_cols=183  Identities=19%  Similarity=0.297  Sum_probs=125.8

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-   82 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-   82 (231)
                      ...|.+|++.+-....++.||+.+|.++.|=|..+.            ...++||+.|++|++|.++....+....++. 
T Consensus        33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~------------~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~  100 (764)
T KOG1063|consen   33 GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEI------------VAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH  100 (764)
T ss_pred             CceEEEeCcccceeEEeccCCccceEEEEEcccccc------------cceEEEccCCCcEEEEEEeehheEEEEeecCc
Confidence            346778888766567778999999999999886542            1269999999999999998655544444443 


Q ss_pred             cceeEEEccCCCEEEE-EcCCeEEEEECCCcc--eEEeeeccc-eeE--EEEEEecCCCCEEEEecCCCeEEEEeCCCc-
Q psy6442          83 VPNSLEISRDGTTITV-THGSCVTFLDANSLE--LIKEHKVPA-QVH--SASLLLNSERPIFVCGGEDLKMYKFDYSTG-  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~--~~~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-  155 (231)
                      ....+++...-....+ +.++.+.+|+....+  +....+... ...  ++....+++..+++.|+.+..|.++-.... 
T Consensus       101 ~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~  180 (764)
T KOG1063|consen  101 CKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADS  180 (764)
T ss_pred             ceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcc
Confidence            3344444433223322 467889999985555  222222221 111  122223445556778888888888865432 


Q ss_pred             -ceeeeccCCCCCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCC
Q psy6442         156 -AEIESFKGHFGPIHCVKFSPDGE---LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       156 -~~~~~~~~h~~~V~~v~~spd~~---~laS~s~d~~v~iwd~~~~~  198 (231)
                       +....++||.+-|++++|...+.   +|||+|.|..||||.+.-+.
T Consensus       181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~  227 (764)
T KOG1063|consen  181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGD  227 (764)
T ss_pred             eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecC
Confidence             45678899999999999998654   89999999999999986544

>KOG2106|consensus

Probab=99.43  E-value=2.3e-11  Score=100.87  Aligned_cols=195  Identities=16%  Similarity=0.261  Sum_probs=136.1

Q ss_pred             CCCceeeeccCCCeEee---eeccc-ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-
Q psy6442           4 DGKPMLRQGDTGDWIGT---FEGHK-GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-   78 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~---l~gH~-~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-   78 (231)
                      .|-+.+|+...|.+..+   |+++. ..|.++.|.++|+                ++|+..+|+|.||+....+..+.. 
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----------------viTgDS~G~i~Iw~~~~~~~~k~~~  284 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----------------VITGDSGGNILIWSKGTNRISKQVH  284 (626)
T ss_pred             CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----------------EEeecCCceEEEEeCCCceEEeEee
Confidence            45678999988877554   55554 4699999998764                789999999999999776655444 


Q ss_pred             EeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          79 EFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      .++..+.+++.-.+|..+....|..|..|| ...+.+++.+.|.............+. ++.|.....|..=.+..+..+
T Consensus       285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EEEeeccceEEEeeecCCceE
Confidence            457789999999999998866678999999 444555666655432222222222333 566655555554444444332


Q ss_pred             eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                       +..+|....+.++.+|+..+|++|+.|+.++||+  .-|  -.|+-....-+-...|.++||
T Consensus       363 -~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~fhpsg~  420 (626)
T KOG2106|consen  363 -TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECADFHPSGV  420 (626)
T ss_pred             -EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc--eeEEEEecCceeEeeccCcce
Confidence             3357999999999999999999999999999999  223  245444444445556777663

>KOG0307|consensus

Probab=99.42  E-value=7.7e-13  Score=118.30  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=137.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeec--ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~g--H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      |+.||++.+||.+.-+.-.++..  -.+.|.++.|+..-              ...|++++.+|.+-|||++.++.+..+
T Consensus       135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv--------------qhILAS~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV--------------SHILASGSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh--------------hHHhhccCCCCCceeccccCCCccccc
Confidence            57899999999876444444421  35679999998753              345899999999999999998777665


Q ss_pred             EeCC---cceeEEEccCCCE-EEE-EcC---CeEEEEECCCcce-EEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          79 EFGA---VPNSLEISRDGTT-ITV-THG---SCVTFLDANSLEL-IKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        79 ~~~~---~~~~v~~~~~~~~-~~~-~~~---~~i~~~d~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ....   ....++|+|+... +++ +.+   -+|.+||++.... ++..+.+. .+.++.| ...+..++++.+.|++|.
T Consensus       201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW-c~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW-CPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc-CCCCchhhhcccCCCCee
Confidence            4432   3668999999863 433 333   3889999775433 33443322 3444444 234557899999999999


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCe
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +|+.++++.+..+.....-+..+.|.|.. ..++.++-||.|-|+.+..+..
T Consensus       280 ~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  280 CWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             EecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence            99999999999998777789999999965 4889999999999999877653

>KOG2111|consensus

Probab=99.42  E-value=1.9e-11  Score=96.07  Aligned_cols=161  Identities=18%  Similarity=0.258  Sum_probs=121.3

Q ss_pred             CCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECC-CcceEEeeeccc-eeEEEEEEecCCCCEEE
Q psy6442          62 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN-SLELIKEHKVPA-QVHSASLLLNSERPIFV  139 (231)
Q Consensus        62 ~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  139 (231)
                      ..|.|||-...+++.++.+..++.+|.+.++  .+++...+.|.+|.-. +.+.++.++... +-..+++.......+++
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            3699999888899999999999999999986  3444456788888865 566666655433 22233333344444555


Q ss_pred             Eec-CCCeEEEEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcE-EEEeCCCCCeeee-eeccCCcccCCC
Q psy6442         140 CGG-EDLKMYKFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGSEDGTL-RLWQTNVGKTYGL-WKCIEGGLNNSL  214 (231)
Q Consensus       140 ~g~-~d~~i~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v-~iwd~~~~~~~~~-~~~~~~~~~~~~  214 (231)
                      ..+ ..|.|++-|+.....  ....++|...|.+++++-+|.++||||..||+ ||||.++|...+. .++++.+-..-|
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            544 458899999876543  46678999999999999999999999999995 9999999998765 578888877778


Q ss_pred             CCCccccccc
Q psy6442         215 GLDSSGHLNN  224 (231)
Q Consensus       215 ~~~~~~~~~~  224 (231)
                      +|+++..++-
T Consensus       233 aFSp~~s~La  242 (346)
T KOG2111|consen  233 AFSPNSSWLA  242 (346)
T ss_pred             EeCCCccEEE
Confidence            8887665543

>KOG0321|consensus

Probab=99.41  E-value=1.7e-11  Score=103.96  Aligned_cols=195  Identities=18%  Similarity=0.275  Sum_probs=127.2

Q ss_pred             cCCCceeeeccCCCe------EeeeecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442           3 VDGKPMLRQGDTGDW------IGTFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------   50 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------   50 (231)
                      .||.|.|++...-.+      +..+..|.+.|+.+.|.|...+|++++.|-+++                          
T Consensus        72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c  151 (720)
T KOG0321|consen   72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSEC  151 (720)
T ss_pred             CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhh
Confidence            688999998754332      355678999999999999777888887764332                          


Q ss_pred             ----CCCEEEEEeCCCCEEEEeCCCCCc--------------------e-------EE-EE----eCCcceeEEEccCCC
Q psy6442          51 ----NNTRLISCAEDKTVRLWDVSASAE--------------------V-------QK-LE----FGAVPNSLEISRDGT   94 (231)
Q Consensus        51 ----~~~~l~s~s~D~ti~iwd~~~~~~--------------------~-------~~-~~----~~~~~~~v~~~~~~~   94 (231)
                          +...++||+.||.|.|||++-...                    .       +. ..    +...|+.+ +..|..
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv-~fkDe~  230 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV-LFKDES  230 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE-EEeccc
Confidence                667899999999999999864320                    0       00 00    01123333 444545


Q ss_pred             EEE-EEc-CCeEEEEECCCcceE------Eeeeccc----eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc--ceeee
Q psy6442          95 TIT-VTH-GSCVTFLDANSLELI------KEHKVPA----QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG--AEIES  160 (231)
Q Consensus        95 ~~~-~~~-~~~i~~~d~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~--~~~~~  160 (231)
                      .++ ++. |+.|++||++.....      ...+.+.    .....++..+..|..+.+...|.+|+.|++.+-  .+...
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~  310 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE  310 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence            444 343 789999998864432      2222221    122233434666666666666999999999653  23444


Q ss_pred             ccCCCCC--eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         161 FKGHFGP--IHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       161 ~~~h~~~--V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +.++...  -..-..+||+.+++||+.|..+.||.+.+..
T Consensus       311 ~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  311 FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence            5554321  1223589999999999999999999986554

>KOG1445|consensus

Probab=99.40  E-value=3e-12  Score=108.77  Aligned_cols=186  Identities=18%  Similarity=0.219  Sum_probs=124.9

Q ss_pred             CCcCCCceeeeccCCCe-------EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDTGDW-------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      +++||.|+||-...+.+       -..|++|..+|+++.|+|=              ....|+++++|.||++||+...+
T Consensus       646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL--------------AadvLa~asyd~Ti~lWDl~~~~  711 (1012)
T KOG1445|consen  646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPL--------------AADVLAVASYDSTIELWDLANAK  711 (1012)
T ss_pred             cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecch--------------hhhHhhhhhccceeeeeehhhhh
Confidence            47899999999865533       3447899999999999983              24568999999999999999887


Q ss_pred             ceEEE-EeCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcce-EEeeeccceeEEEEEEecCCCCEEEEecCCC----e
Q psy6442          74 EVQKL-EFGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLEL-IKEHKVPAQVHSASLLLNSERPIFVCGGEDL----K  146 (231)
Q Consensus        74 ~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~----~  146 (231)
                      ....+ .+...+..++|+|+|+.++ ++.+++++++..+..+. +++-+.+..-....+.+-.++++++..+.|.    .
T Consensus       712 ~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ  791 (1012)
T KOG1445|consen  712 LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ  791 (1012)
T ss_pred             hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence            65554 4678999999999999775 57799999999776543 3333333333333344455677777665553    4


Q ss_pred             EEEEeCCCc--ceeeeccCCCCC-eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         147 MYKFDYSTG--AEIESFKGHFGP-IHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       147 i~~~d~~~~--~~~~~~~~h~~~-V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      |.+||-.+-  ..+.+.--..++ +.-=.|.+| +-+|++|-.|..|..|.+--..++
T Consensus       792 v~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy  849 (1012)
T KOG1445|consen  792 VQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY  849 (1012)
T ss_pred             hhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence            556654321  122211000000 001124444 347899999999999998766665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.6e-10  Score=98.97  Aligned_cols=199  Identities=13%  Similarity=0.132  Sum_probs=127.3

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP   84 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~   84 (231)
                      .++++++. .|.....+..|.+.+.+..|+|||+.++..+.            ...+..|.+||+.+++......+...+
T Consensus       182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~------------~~g~~~i~~~dl~~g~~~~l~~~~g~~  248 (435)
T PRK05137        182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSY------------ANGRPRVYLLDLETGQRELVGNFPGMT  248 (435)
T ss_pred             eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEe------------cCCCCEEEEEECCCCcEEEeecCCCcc
Confidence            36778885 46667778889999999999999776543210            112468999999888765444455566


Q ss_pred             eeEEEccCCCEEEEE--cC--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-C--CeEEEEeCCCcce
Q psy6442          85 NSLEISRDGTTITVT--HG--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-D--LKMYKFDYSTGAE  157 (231)
Q Consensus        85 ~~v~~~~~~~~~~~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d--~~i~~~d~~~~~~  157 (231)
                      ...+|+||++.++..  .+  ..|.++|..+....+....+.....  ..++|++..++..+. +  ..|+++|...+..
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~--~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTS--PSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCc--eeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            788999999976543  23  3577778876654433222222222  334788887776553 2  4688899866543


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                       ..+..+...+....|||||+.|+..+.+   ..|.+||+..+.. .+++.  +......+|.++|.+
T Consensus       327 -~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~  390 (435)
T PRK05137        327 -RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRV  390 (435)
T ss_pred             -EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCE
Confidence             3333344556778899999998877643   3578889865543 33432  222345566666654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.2e-10  Score=99.66  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=125.8

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC---CCCEEEEeCCCCCceEEEEeC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE---DKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~---D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      .++++||.. |...+.+..|...+.+..|+|+|+.++               ..+.   +..|.+||+.+++......+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la---------------~~s~~~~~~~l~~~dl~~g~~~~l~~~~  247 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLA---------------YVSFERGRSAIYVQDLATGQRELVASFR  247 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEE---------------EEecCCCCcEEEEEECCCCCEEEeccCC
Confidence            468888864 666666777888899999999876643               3332   346999999887764433344


Q ss_pred             CcceeEEEccCCCEEEEE--cC--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-CC--eEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVT--HG--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-DL--KMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~--~i~~~d~~~  154 (231)
                      .......|+||++.+++.  .+  ..|.++|..+.+..+.........  ...++++++.++..+. ++  .|+.+++.+
T Consensus       248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~--~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT--EPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc--ceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            455578999999977543  23  368889987765443322221112  2344888887776653 33  478888766


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ++.. .+..+.......+|||||++++..+.++   .|.+||+.+++... ++  .+......++.++|.+
T Consensus       326 g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt--~~~~~~~p~~spdG~~  392 (433)
T PRK04922        326 GSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT--PGSLDESPSFAPNGSM  392 (433)
T ss_pred             CCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC--CCCCCCCceECCCCCE
Confidence            5532 2222333455789999999888765443   58999998887653 22  2223344567777664

>KOG1963|consensus

Probab=99.38  E-value=1.9e-11  Score=106.88  Aligned_cols=186  Identities=19%  Similarity=0.288  Sum_probs=124.8

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .+.+|.+++..||+++..|.+|..++..+.+.|....            -..+.+++.||+|++||...+..++++...-
T Consensus        35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~------------~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN------------ANYLIVCSLDGTIRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             eCCEEEEEecchHhhhhhcccccCccceeeecCCCcc------------ceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence            4678999999999999999999999999988875321            1457899999999999998887766654332


Q ss_pred             cceeEEE-----------------------------------------------------------ccCCCEEEEEcCCe
Q psy6442          83 VPNSLEI-----------------------------------------------------------SRDGTTITVTHGSC  103 (231)
Q Consensus        83 ~~~~v~~-----------------------------------------------------------~~~~~~~~~~~~~~  103 (231)
                      .+..+.+                                                           ++.+....+...-.
T Consensus       103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~  182 (792)
T KOG1963|consen  103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK  182 (792)
T ss_pred             ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence            2222211                                                           11111111111122


Q ss_pred             EEEEECCCcce-EEe--eeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC--c--ceeeeccCCCCCeeEEEEcCC
Q psy6442         104 VTFLDANSLEL-IKE--HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST--G--AEIESFKGHFGPIHCVKFSPD  176 (231)
Q Consensus       104 i~~~d~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~--~--~~~~~~~~h~~~V~~v~~spd  176 (231)
                      +.+|....... ...  .........-+...+|.++.+++|..||+|.+|.--.  .  .....+.-|.++|++++|+++
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence            22232222110 000  0001111123445689999999999999999995321  1  224567789999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         177 GELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       177 ~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      |.+|.||+..+.+-+|...+++..
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~kq  286 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGKKQ  286 (792)
T ss_pred             CceEeecccceEEEEEeecCCCcc
Confidence            999999999999999999999844

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.5e-10  Score=97.60  Aligned_cols=195  Identities=17%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC---CCCEEEEeCCCCCceEEEEeC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE---DKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~---D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      .++.+++. +|+....+..|.+.+.+..|+|+|+.++               ..+.   ...|.+||+.+++........
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la---------------~~s~~~~~~~I~~~dl~~g~~~~l~~~~  239 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLA---------------YVSFESKKPVVYVHDLATGRRRVVANFK  239 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEE---------------EEEccCCCcEEEEEECCCCCEEEeecCC
Confidence            35666664 5777677777888999999999976543               3332   245999999988765443445


Q ss_pred             CcceeEEEccCCCEEEEE--cCCe--EEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-CC--eEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVT--HGSC--VTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-DL--KMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~--~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~--~i~~~d~~~  154 (231)
                      ......+|+||+..++..  .++.  +..+|.......+..........  ..++|+++.++..+. ++  .|+..+...
T Consensus       240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~--~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTE--PFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcC--eEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            556788999999977643  3444  44455544432222111111222  234888887776543 33  455556555


Q ss_pred             cceee-eccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         155 GAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       155 ~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      +.... ++.+  ......+|||||++++..+.++   .|.+||+.+++...+ ..  .......+|.++|++
T Consensus       318 g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~--~~~~~~p~~spdg~~  384 (427)
T PRK02889        318 GAAQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD--TTRDESPSFAPNGRY  384 (427)
T ss_pred             CceEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC--CCCccCceECCCCCE
Confidence            44222 2222  2344678999999998877654   599999998876533 22  223355677777765

>KOG1523|consensus

Probab=99.37  E-value=3.7e-11  Score=94.55  Aligned_cols=168  Identities=20%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCc---eEEEEeCCcceeEEEcc
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAE---VQKLEFGAVPNSLEISR   91 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~---~~~~~~~~~~~~v~~~~   91 (231)
                      +..++|+.|...|..++|+|..               .+|+||+.|+.-.+|...+ ++-   +..+.+....++|.|+|
T Consensus        46 ~~~htls~Hd~~vtgvdWap~s---------------nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP  110 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKS---------------NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP  110 (361)
T ss_pred             eeceehhhhCcceeEEeecCCC---------------CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence            4689999999999999999974               4589999999999999843 322   33445678899999999


Q ss_pred             CCCEEEEEcCC-eEEEE--ECCC-cceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeC-----C---------
Q psy6442          92 DGTTITVTHGS-CVTFL--DANS-LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDY-----S---------  153 (231)
Q Consensus        92 ~~~~~~~~~~~-~i~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~-----~---------  153 (231)
                      ..+.++++.+. .|.+|  ...+ ..+-+.++-|......++.+++++-++++|+.|+.+++|..     +         
T Consensus       111 ~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWg  190 (361)
T KOG1523|consen  111 KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWG  190 (361)
T ss_pred             cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCc
Confidence            99998887654 44443  3222 22223344454444556667999999999999999888742     1         


Q ss_pred             ----CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         154 ----TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       154 ----~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                          -|+++.++....+-|+.+.|+|+|..|+=.+.|.++.+=|.....
T Consensus       191 sk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  191 SKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                122334444455779999999999999999999999999987664

>KOG0644|consensus

Probab=99.37  E-value=3.8e-13  Score=117.03  Aligned_cols=183  Identities=20%  Similarity=0.307  Sum_probs=133.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +++|-.|++|+-.++++++++.||.+.|..++.+..               +..++++|.|.-|++|.+.++..+..+. 
T Consensus       208 gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~---------------n~~iaaaS~D~vIrvWrl~~~~pvsvLrg  272 (1113)
T KOG0644|consen  208 GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN---------------NTMIAAASNDKVIRVWRLPDGAPVSVLRG  272 (1113)
T ss_pred             cCccceeeeeeccchhhhccCCCCccccchhccchh---------------hhhhhhcccCceEEEEecCCCchHHHHhc
Confidence            578889999999999999999999999998887653               6678999999999999999998877664 


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceE---Eeeeccc-------------------------eeEE-EEEE
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI---KEHKVPA-------------------------QVHS-ASLL  130 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~-------------------------~~~~-~~~~  130 (231)
                      +...+++++|+|-.   ..+.++++++||.+-...+   +..+...                         +... ....
T Consensus       273 htgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~  349 (1113)
T KOG0644|consen  273 HTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA  349 (1113)
T ss_pred             cccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence            56789999999854   3346789999987611100   0000000                         0000 0000


Q ss_pred             ecCCCCEEEEe-----------cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCC
Q psy6442         131 LNSERPIFVCG-----------GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       131 ~~~~~~~~~~g-----------~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +......+++.           -.+..+..|++.++.+++.+.+|..++..+.++|- .++..+++.||...|||+-.|-
T Consensus       350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            11112223333           33456778999999999999999999999999995 5677899999999999998887


Q ss_pred             eee
Q psy6442         199 TYG  201 (231)
Q Consensus       199 ~~~  201 (231)
                      +++
T Consensus       430 pik  432 (1113)
T KOG0644|consen  430 PIK  432 (1113)
T ss_pred             cce
Confidence            654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.35  E-value=5.7e-10  Score=92.59  Aligned_cols=181  Identities=29%  Similarity=0.483  Sum_probs=134.0

Q ss_pred             CcCCCceeeeccCCC-eEeeeecccc-cEEEEEE-CCCCceeEeccccccccCCCEEEEEeC-CCCEEEEeCCC-CCceE
Q psy6442           2 CVDGKPMLRQGDTGD-WIGTFEGHKG-CVWGVDI-NKDASKAASGAADFQAKNNTRLISCAE-DKTVRLWDVSA-SAEVQ   76 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~-~i~~l~gH~~-~V~~~~~-~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~ti~iwd~~~-~~~~~   76 (231)
                      +.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++.              ..++..+. |+++++||... .....
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~  149 (466)
T COG2319          84 SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN--------------SILLASSSLDGTVKLWDLSTPGKLIR  149 (466)
T ss_pred             cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc--------------eEEeccCCCCccEEEEEecCCCeEEE
Confidence            358899999988776 7777887554 6666666 55432              13444444 99999999987 44444


Q ss_pred             EEE-eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCC-EEEEecCCCeEEEEe
Q psy6442          77 KLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERP-IFVCGGEDLKMYKFD  151 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d  151 (231)
                      .+. +...+..+.++|++..++...  ++.+.+|+......+..... ...+..+.+  .+++. .+++++.|+.+++||
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd  227 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF--SPDGGLLIASGSSDGTIRLWD  227 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE--cCCcceEEEEecCCCcEEEEE
Confidence            443 456778999999998666553  78999999987666555554 234554444  47776 555558999999999


Q ss_pred             CCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         152 YSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       152 ~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ...+..+. .+.+|...+ -..|+|++.++++++.|+.+++|+......
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         228 LSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            88777777 688898875 448999999999999999999999986664

>KOG1007|consensus

Probab=99.35  E-value=7.1e-11  Score=91.95  Aligned_cols=144  Identities=20%  Similarity=0.327  Sum_probs=102.6

Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcce-EEeeecc-ce
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLEL-IKEHKVP-AQ  123 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~-~~~~~~~-~~  123 (231)
                      .++..+++.+ |+++..||+++.++...+.  ++..+.++.+.|+.+.++++  .++.+++||.+..+. +.+...+ .-
T Consensus       182 Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  182 HDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             CccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence            3566677765 8999999999888776664  56778999999998876664  468999999876543 3332222 22


Q ss_pred             eEEEEEEecCC-CCEEEEecCCCeEEEEeCCCc-----------------------------ceeeeccCCCCCeeEEEE
Q psy6442         124 VHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTG-----------------------------AEIESFKGHFGPIHCVKF  173 (231)
Q Consensus       124 ~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~-----------------------------~~~~~~~~h~~~V~~v~~  173 (231)
                      +-++.+  +|. .+++++|+.|..+.++...+.                             ..+.++..|...|.+++|
T Consensus       261 vW~VRf--n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  261 VWAVRF--NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW  338 (370)
T ss_pred             EEEEEe--cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence            333333  444 345778888888888743211                             024467889999999999


Q ss_pred             cC-CCCEEEEeeCCCcEEEEeCCC
Q psy6442         174 SP-DGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       174 sp-d~~~laS~s~d~~v~iwd~~~  196 (231)
                      |. |.-+|||-|.||.+.|=.+..
T Consensus       339 SsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecCCh
Confidence            98 566899999999998877643

>KOG1009|consensus

Probab=99.35  E-value=9.4e-12  Score=100.50  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=114.3

Q ss_pred             CCcCCCceeeeccCC---------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGDTG---------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g---------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      ++.|.++|+|...++         +.+.+|..|+..|..+.|+|+|.               .|+||+.+|.|.+|-...
T Consensus        32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge---------------lLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE---------------LLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC---------------eeeecCCCceEEEEEecC
Confidence            578999999988533         35788999999999999999855               478999999999997653


Q ss_pred             CCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          72 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                      -...   ....   .....+.. .                 ...+.... ...+..++  +.+++.++++++-|..+++|
T Consensus        97 ~~~~---~~d~---e~~~~ke~-w-----------------~v~k~lr~h~~diydL~--Ws~d~~~l~s~s~dns~~l~  150 (434)
T KOG1009|consen   97 VRIF---DADT---EADLNKEK-W-----------------VVKKVLRGHRDDIYDLA--WSPDSNFLVSGSVDNSVRLW  150 (434)
T ss_pred             cCCc---cccc---hhhhCccc-e-----------------EEEEEecccccchhhhh--ccCCCceeeeeeccceEEEE
Confidence            1100   0000   00000000 0                 00011111 11222233  48899999999999999999


Q ss_pred             eCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         151 DYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       151 d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      |+..|..+..+..|...|..++|.|-++++++-+.|+..+++.+...+..
T Consensus       151 Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  151 DVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             EeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence            99999999999999999999999999999999999998888877655543

>KOG0771|consensus

Probab=99.34  E-value=1.7e-11  Score=99.41  Aligned_cols=155  Identities=16%  Similarity=0.249  Sum_probs=101.8

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCc-eEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec---cceeEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAE-VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV---PAQVHS  126 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~  126 (231)
                      ++..|++++.||++|||+..+... ....++...+.++.|+||++.++.......++|+..+...++....   +.....
T Consensus       155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~  234 (398)
T KOG0771|consen  155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSS  234 (398)
T ss_pred             CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhh
Confidence            568899999999999999655443 3344567899999999999987655444889999988866554331   111222


Q ss_pred             EEEEecCCCC---EEEEecCCCeEEEEeCCC--c-c--eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         127 ASLLLNSERP---IFVCGGEDLKMYKFDYST--G-A--EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       127 ~~~~~~~~~~---~~~~g~~d~~i~~~d~~~--~-~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +.+...+.+.   +++....-+.|..+++..  + .  ...+...-...|.+++.|+||+++|-|+.||.|-|+++.+-+
T Consensus       235 cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq  314 (398)
T KOG0771|consen  235 CRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ  314 (398)
T ss_pred             ceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee
Confidence            2332222212   222233334555555421  1 1  122222233479999999999999999999999999998887


Q ss_pred             eeeeeec
Q psy6442         199 TYGLWKC  205 (231)
Q Consensus       199 ~~~~~~~  205 (231)
                      ..+..+.
T Consensus       315 ~~~~vk~  321 (398)
T KOG0771|consen  315 RLQYVKE  321 (398)
T ss_pred             eeEeehh
Confidence            7654443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.4e-10  Score=97.82  Aligned_cols=176  Identities=16%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             CCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEE--eCCCCCceEEEEe
Q psy6442           5 GKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLW--DVSASAEVQKLEF   80 (231)
Q Consensus         5 ~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iw--d~~~~~~~~~~~~   80 (231)
                      .++++|+..+|+  .+..+.+|..   ...|+|||+.++              ++.+.|+.+.||  |+.++........
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~~~---~~~wSPDG~~La--------------~~~~~~g~~~Iy~~d~~~~~~~~lt~~  290 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGHNG---APAFSPDGSRLA--------------FASSKDGVLNIYVMGANGGTPSQLTSG  290 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCccC---ceeECCCCCEEE--------------EEEecCCcEEEEEEECCCCCeEeeccC
Confidence            468889988775  3555566543   578999865532              233467776665  6655554333233


Q ss_pred             CCcceeEEEccCCCEEEEE-c-CCeEEEEECC--CcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          81 GAVPNSLEISRDGTTITVT-H-GSCVTFLDAN--SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~-~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      ...+....|+||++.++.. . ++...+|+..  .... ...... . .  ...++|++..++..+.+ .+..||+.+++
T Consensus       291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~-~-~--~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~  364 (429)
T PRK01742        291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGR-G-Y--SAQISADGKTLVMINGD-NVVKQDLTSGS  364 (429)
T ss_pred             CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCC-C-C--CccCCCCCCEEEEEcCC-CEEEEECCCCC
Confidence            4456789999999976543 2 3556666543  2222 111111 1 1  23358899888877665 45669998876


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC--CCCCeeeeeec
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT--NVGKTYGLWKC  205 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~--~~~~~~~~~~~  205 (231)
                      .......+  ...+++|+|||++|+.++.++.+++|.+  .+|+....+..
T Consensus       365 ~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        365 TEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             eEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            44322222  2356789999999999999999998875  35666655553

>KOG1445|consensus

Probab=99.33  E-value=6.5e-12  Score=106.75  Aligned_cols=171  Identities=16%  Similarity=0.236  Sum_probs=117.7

Q ss_pred             CCCEEE--EEeCCCCEEEEeCCCCCce-----EEEEeCCcceeEEEccCC-CEEEE-EcCCeEEEEECCCcceEE-----
Q psy6442          51 NNTRLI--SCAEDKTVRLWDVSASAEV-----QKLEFGAVPNSLEISRDG-TTITV-THGSCVTFLDANSLELIK-----  116 (231)
Q Consensus        51 ~~~~l~--s~s~D~ti~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~~~~~~~~-----  116 (231)
                      ++.+++  -+|..|.|-|+++.....+     ..+.-+..++++.|.|=+ ..+++ +.++.|++|.+......+     
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP  669 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP  669 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence            445544  3456789999999765432     223345678899999843 34554 567899999865433221     


Q ss_pred             --eeecc-ceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         117 --EHKVP-AQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       117 --~~~~~-~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                        ..+.+ .++..+.+  +| ...++++++.|.+|++||+.++.+...+.+|++.|.+++|||+|+++|+.+.||+|++|
T Consensus       670 e~~lt~h~eKI~slRf--HPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy  747 (1012)
T KOG1445|consen  670 EKILTIHGEKITSLRF--HPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY  747 (1012)
T ss_pred             ceeeecccceEEEEEe--cchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence              12222 23444444  43 24467889999999999999999889999999999999999999999999999999999


Q ss_pred             eCCCCCe-eeeeeccCCcccCCCCCCcccccc
Q psy6442         193 QTNVGKT-YGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       193 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      +.+++.. +..=++..+.-.+-|.|.-+||..
T Consensus       748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  748 EPRSREQPVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             CCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence            9877653 333333333444455555555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.33  E-value=3.7e-10  Score=93.30  Aligned_cols=141  Identities=13%  Similarity=0.252  Sum_probs=90.3

Q ss_pred             EEEEeCCCCEEEEeCCCCCceE-------EEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCC--cc--eEEeeec-
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQ-------KLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANS--LE--LIKEHKV-  120 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~--~~--~~~~~~~-  120 (231)
                      +++...+++|.+||+.....+.       .+..+..+..+.++|+++.+++..  ++.+.+|+...  ..  .+..... 
T Consensus       141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  220 (330)
T PRK11028        141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM  220 (330)
T ss_pred             EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence            3556667999999997633221       122345678999999999988764  57999998763  22  2222211 


Q ss_pred             c----ceeEEEEEEecCCCCEEEEecC-CCeEEEEeCCCcceeeeccCCC---CCeeEEEEcCCCCEEEEeeC-CCcEEE
Q psy6442         121 P----AQVHSASLLLNSERPIFVCGGE-DLKMYKFDYSTGAEIESFKGHF---GPIHCVKFSPDGELYASGSE-DGTLRL  191 (231)
Q Consensus       121 ~----~~~~~~~~~~~~~~~~~~~g~~-d~~i~~~d~~~~~~~~~~~~h~---~~V~~v~~spd~~~laS~s~-d~~v~i  191 (231)
                      +    .+.....+.++|++++++++.. +..|.+|++.......++.+|.   ...+.++++|||++|+++.. +++|.|
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v  300 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISV  300 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEE
Confidence            1    1111223445889998887754 6789899885432111222221   24568999999998877664 999999


Q ss_pred             EeCC
Q psy6442         192 WQTN  195 (231)
Q Consensus       192 wd~~  195 (231)
                      |++.
T Consensus       301 ~~~~  304 (330)
T PRK11028        301 YEID  304 (330)
T ss_pred             EEEc
Confidence            9864

>KOG1310|consensus

Probab=99.31  E-value=1.1e-11  Score=103.86  Aligned_cols=124  Identities=23%  Similarity=0.388  Sum_probs=94.1

Q ss_pred             EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCE
Q psy6442          18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTT   95 (231)
Q Consensus        18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~   95 (231)
                      -+.|.||+|+|.+++|+.+|.               .|+|||.|-.+.|||....+.+..+..  ...++++        
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~---------------lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsv--------   99 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGE---------------LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSV--------   99 (758)
T ss_pred             hhhhccccceecceeecCCCC---------------EEeecCCcceEEeecchhcceeeeeecccccceeEE--------
Confidence            345789999999999998754               588999999999999987666555432  2233333        


Q ss_pred             EEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------ceeeeccCCC
Q psy6442          96 ITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG----------AEIESFKGHF  165 (231)
Q Consensus        96 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~----------~~~~~~~~h~  165 (231)
                                                      .+.+....+++++|..|..|++||+.+.          +.++.+..|.
T Consensus       100 --------------------------------KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht  147 (758)
T KOG1310|consen  100 --------------------------------KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHT  147 (758)
T ss_pred             --------------------------------eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhh
Confidence                                            3334455667788888888888888641          1234456789


Q ss_pred             CCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCC
Q psy6442         166 GPIHCVKFSPDG-ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       166 ~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~  196 (231)
                      ..|-.++-.|++ +.+-||++||+||=+|++.
T Consensus       148 ~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  148 DRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             hhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            999999999987 8999999999999999976

>KOG1240|consensus

Probab=99.30  E-value=1.5e-10  Score=104.76  Aligned_cols=181  Identities=14%  Similarity=0.265  Sum_probs=126.4

Q ss_pred             eeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-------CceEEEE-eC
Q psy6442          10 RQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-------AEVQKLE-FG   81 (231)
Q Consensus        10 ~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-------~~~~~~~-~~   81 (231)
                      |. -+|.+++.|..|+..|..++.+++.              ...++|||.||+||+|+.+.-       ++..+.. .+
T Consensus      1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~--------------~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~ 1098 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEH--------------TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG 1098 (1431)
T ss_pred             CC-ccceEeehhhhccccccceeecCCC--------------CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC
Confidence            55 3589999999999999888877652              356899999999999998642       1222222 35


Q ss_pred             CcceeEEEccCCCEEEEE-cCCeEEEEECCCcce-------EEeeeccceeEEEEE---EecCCCCEEEEecCCCeEEEE
Q psy6442          82 AVPNSLEISRDGTTITVT-HGSCVTFLDANSLEL-------IKEHKVPAQVHSASL---LLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~d~~i~~~  150 (231)
                      ..+..+...+.+..++++ .||.|++.++.-...       .+..+.........+   ........++.+..-+.|..|
T Consensus      1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred             CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence            677888888888877665 578888877654211       111111111101111   111122366777777889999


Q ss_pred             eCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         151 DYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       151 d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      |++....+.+++  -..+.|++++.+|-+..+++|..-|.+.+||++-+.++..|+-
T Consensus      1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred             cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC
Confidence            998766555443  2347899999999999999999999999999999999988863

>KOG3881|consensus

Probab=99.30  E-value=2.4e-10  Score=92.13  Aligned_cols=162  Identities=16%  Similarity=0.233  Sum_probs=117.6

Q ss_pred             CCCEEEEEeCC--CCEEEEeCCCCCceEEEE----------eCCcceeEEEccC--CCEE-EEEcCCeEEEEECCCcc-e
Q psy6442          51 NNTRLISCAED--KTVRLWDVSASAEVQKLE----------FGAVPNSLEISRD--GTTI-TVTHGSCVTFLDANSLE-L  114 (231)
Q Consensus        51 ~~~~l~s~s~D--~ti~iwd~~~~~~~~~~~----------~~~~~~~v~~~~~--~~~~-~~~~~~~i~~~d~~~~~-~  114 (231)
                      ....+++||.-  ..++|||+...+.+..-.          .+-.+.++.|-+.  ...+ .++....+++||.+.+. +
T Consensus       160 ~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP  239 (412)
T KOG3881|consen  160 DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP  239 (412)
T ss_pred             CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence            45667889988  889999998664332211          1223556677665  4444 45567899999988644 3


Q ss_pred             EEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         115 IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                      +..+... .++.+...  .|.+.++++|...+.+..||++.+..+.. +.+-++.|+++..+|.+++||||+-|+.|||+
T Consensus       240 V~~fd~~E~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  240 VAQFDFLENPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             eeEeccccCcceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            4455443 34444444  78899999999999999999999988866 88999999999999999999999999999999


Q ss_pred             eCCCCCeeeeeeccCCcccCCCCC
Q psy6442         193 QTNVGKTYGLWKCIEGGLNNSLGL  216 (231)
Q Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~  216 (231)
                      |+++.+..  .+.|-..-.|.|.+
T Consensus       318 D~ktrkll--~kvYvKs~lt~il~  339 (412)
T KOG3881|consen  318 DIKTRKLL--HKVYVKSRLTFILL  339 (412)
T ss_pred             ecccchhh--hhhhhhccccEEEe
Confidence            99996532  23444444444444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=1.5e-09  Score=92.43  Aligned_cols=179  Identities=15%  Similarity=0.172  Sum_probs=116.7

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN   85 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~   85 (231)
                      .+++++.+ |.....+..+.+.+.+..|+|+|++++....            .+...+|++||+.+++......+.....
T Consensus       171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~------------~~~~~~i~v~d~~~g~~~~~~~~~~~~~  237 (417)
T TIGR02800       171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSF------------ESGKPEIYVQDLATGQREKVASFPGMNG  237 (417)
T ss_pred             eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEc------------CCCCcEEEEEECCCCCEEEeecCCCCcc
Confidence            46677754 5556667777778999999998776542210            1112479999998876554444555567


Q ss_pred             eEEEccCCCEEEEEc--C--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCccee
Q psy6442          86 SLEISRDGTTITVTH--G--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTGAEI  158 (231)
Q Consensus        86 ~v~~~~~~~~~~~~~--~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~~~~  158 (231)
                      ..+|+||++.+++..  +  ..+.+++..+...............  ..++++++.++..+..   ..|+++|+.+++. 
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~--~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-  314 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTE--PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-  314 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCC--EEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            789999998776532  2  3578888776544333222211112  2336788877655432   3688888876653 


Q ss_pred             eeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCee
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGKTY  200 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~~~  200 (231)
                      ..+..+...+....|+|++.+++.++.++   .|.+||+.++...
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            33433455677889999999998888776   7889998886543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0642|consensus

Probab=99.28  E-value=2.6e-11  Score=101.53  Aligned_cols=149  Identities=23%  Similarity=0.387  Sum_probs=102.6

Q ss_pred             eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE
Q psy6442          20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT   99 (231)
Q Consensus        20 ~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   99 (231)
                      ++..|.+.|..+.|.+.               ...|++|+.|+++++|.++....                 ...     
T Consensus       289 tl~s~~d~ir~l~~~~s---------------ep~lit~sed~~lk~WnLqk~~~-----------------s~~-----  331 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPS---------------EPVLITASEDGTLKLWNLQKAKK-----------------SAE-----  331 (577)
T ss_pred             eeecchhhhhhhhcCCC---------------CCeEEEeccccchhhhhhcccCC-----------------ccc-----
Confidence            56678888888877764               34589999999999999843110                 000     


Q ss_pred             cCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------ceeeeccCCCCCe
Q psy6442         100 HGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG----------AEIESFKGHFGPI  168 (231)
Q Consensus       100 ~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~----------~~~~~~~~h~~~V  168 (231)
                                ...+++.+++. ..++.+.++  ...+..+.+|+-|++|+.|++...          .+..++.||++.|
T Consensus       332 ----------~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav  399 (577)
T KOG0642|consen  332 ----------KDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV  399 (577)
T ss_pred             ----------cceeeeEEEecccCceEEEEe--cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccce
Confidence                      00122222322 234544444  777888999999999999955321          2346788999999


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe--eeeeeccCCcccCCCCCCcc
Q psy6442         169 HCVKFSPDGELYASGSEDGTLRLWQTNVGKT--YGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       169 ~~v~~spd~~~laS~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~  219 (231)
                      +.+++|+....|++|+.||++|+|+.....+  +..-+  ..+++.++.+..+
T Consensus       400 w~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~--e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  400 WLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK--EHGYPLSVDRTSS  450 (577)
T ss_pred             eeeeecccccceeeecCCceEEeeccCCcCccccCCcc--ccCCcceEeeccc
Confidence            9999999999999999999999999988776  33223  2455555555543

>KOG0322|consensus

Probab=99.27  E-value=7.7e-11  Score=90.67  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=115.0

Q ss_pred             eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-e-CCcceeEEEccCCCEE
Q psy6442          19 GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-F-GAVPNSLEISRDGTTI   96 (231)
Q Consensus        19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~   96 (231)
                      -.|++|.+.|+++.|..+                .+|.++..-|.|++|++++.+....+. + ...+..+..-|++...
T Consensus         8 fvLRp~~~~v~s~~fqa~----------------~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~   71 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQAN----------------ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLD   71 (323)
T ss_pred             eEeccccchheehhhccc----------------hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchh
Confidence            457799999999988764                457888888999999998877665555 2 3345666666654444


Q ss_pred             EEEcCCeEEEEECCCcceEEee--------------------------------------eccce--e------------
Q psy6442          97 TVTHGSCVTFLDANSLELIKEH--------------------------------------KVPAQ--V------------  124 (231)
Q Consensus        97 ~~~~~~~i~~~d~~~~~~~~~~--------------------------------------~~~~~--~------------  124 (231)
                      .-..+..+.+|++.....+..+                                      +.+.+  +            
T Consensus        72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg  151 (323)
T KOG0322|consen   72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG  151 (323)
T ss_pred             hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence            3334444555543321111000                                      00000  0            


Q ss_pred             EEEEEE--e-cCCCCEEEEecCCCeEEEEeCCCcc----------eeeeccCCCCCe-----------------------
Q psy6442         125 HSASLL--L-NSERPIFVCGGEDLKMYKFDYSTGA----------EIESFKGHFGPI-----------------------  168 (231)
Q Consensus       125 ~~~~~~--~-~~~~~~~~~g~~d~~i~~~d~~~~~----------~~~~~~~h~~~V-----------------------  168 (231)
                      ...+..  . .....+++.|.+++.+.+||+.++.          .......|..+|                       
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~  231 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM  231 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence            001111  0 1122356788899999999998752          111122343333                       


Q ss_pred             -----------------------eEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         169 -----------------------HCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       169 -----------------------~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                                             ..+.+-||+.++||++.|+.||||+-++.++.+.++-+- +-+|.++|.++
T Consensus       232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd  304 (323)
T KOG0322|consen  232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPD  304 (323)
T ss_pred             eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCC
Confidence                                   346677889999999999999999999999998887655 44677777765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.1e-09  Score=90.20  Aligned_cols=178  Identities=15%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             CCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEe
Q psy6442           5 GKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         5 ~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~   80 (231)
                      .++++++..+|+.  +..+++|   +....|+|||+.++              ++.+.++  .|.+||+.+++..+....
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La--------------~~~~~~g~~~I~~~d~~tg~~~~lt~~  285 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLA--------------FALSKTGSLNLYVMDLASGQIRQVTDG  285 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEE--------------EEEcCCCCcEEEEEECCCCCEEEccCC
Confidence            4567777776643  3334444   34568888876543              2333344  488899988766544333


Q ss_pred             CCcceeEEEccCCCEEEE-EcC-C--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCC
Q psy6442          81 GAVPNSLEISRDGTTITV-THG-S--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYS  153 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~-~~~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~  153 (231)
                      ...+....|+||++.++. +.. +  .+..++.......+.........  ...++|++..++..+.+   ..|++||+.
T Consensus       286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~--~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ--DADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCcc--CEEECCCCCEEEEEEccCCCceEEEEECC
Confidence            445678899999997654 332 2  44555665543322211111122  23348888887765432   468899988


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCc---EEEEeCCCCCeeeeee
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGT---LRLWQTNVGKTYGLWK  204 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~---v~iwd~~~~~~~~~~~  204 (231)
                      ++... .+... .......|+|||++|+.++.++.   +.++++. |+....+.
T Consensus       364 ~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        364 TGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             CCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence            77533 33211 12346789999999999988775   5677774 44333333

>KOG1273|consensus

Probab=99.26  E-value=6.1e-10  Score=87.79  Aligned_cols=161  Identities=14%  Similarity=0.137  Sum_probs=114.8

Q ss_pred             EEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEE
Q psy6442          28 VWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVT  105 (231)
Q Consensus        28 V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~  105 (231)
                      -.++.|++-               |..||.|..||.|-|||+.+....+.+. +-.++.+++|+++|+.++. +.+..+.
T Consensus        26 a~~~~Fs~~---------------G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~   90 (405)
T KOG1273|consen   26 AECCQFSRW---------------GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK   90 (405)
T ss_pred             cceEEeccC---------------cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence            567888876               4568999999999999999887655553 3467899999999998776 4578999


Q ss_pred             EEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc--eeee-ccCCC-CCeeEEEEcCCCCEEE
Q psy6442         106 FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--EIES-FKGHF-GPIHCVKFSPDGELYA  181 (231)
Q Consensus       106 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~--~~~~-~~~h~-~~V~~v~~spd~~~la  181 (231)
                      +||+..+.++++++.+.++..+.+.+.....++++--... -.+.++..+.  .+.. -.+.. ..-.+..|.+.|.++.
T Consensus        91 lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi  169 (405)
T KOG1273|consen   91 LWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII  169 (405)
T ss_pred             EEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence            9999999999999998888877775555555555543332 2222332211  1110 01111 1112345889999999


Q ss_pred             EeeCCCcEEEEeCCCCCeeeeee
Q psy6442         182 SGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       182 S~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      +|...|-+-++|..+.+.++.++
T Consensus       170 tGtsKGkllv~~a~t~e~vas~r  192 (405)
T KOG1273|consen  170 TGTSKGKLLVYDAETLECVASFR  192 (405)
T ss_pred             EecCcceEEEEecchheeeeeee
Confidence            99999999999999887766554

>KOG1009|consensus

Probab=99.24  E-value=1.5e-10  Score=93.75  Aligned_cols=124  Identities=25%  Similarity=0.478  Sum_probs=85.2

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE---EEE-------eCCcceeEEEccCCCE
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ---KLE-------FGAVPNSLEISRDGTT   95 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~---~~~-------~~~~~~~v~~~~~~~~   95 (231)
                      .+|.+++|.+..              ..+|+||+.|..||||-+.....-.   ++.       +...++.+.|      
T Consensus        14 ~pv~s~dfq~n~--------------~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf------   73 (434)
T KOG1009|consen   14 EPVYSVDFQKNS--------------LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF------   73 (434)
T ss_pred             CceEEEEeccCc--------------ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE------
Confidence            578889888753              2379999999999999875432211   110       1223333333      


Q ss_pred             EEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCC--------C--------cceee
Q psy6442          96 ITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYS--------T--------GAEIE  159 (231)
Q Consensus        96 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~--------~--------~~~~~  159 (231)
                                                          +|++.++++|++++.+.+|-..        +        -....
T Consensus        74 ------------------------------------~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k  117 (434)
T KOG1009|consen   74 ------------------------------------SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKK  117 (434)
T ss_pred             ------------------------------------cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEE
Confidence                                                5555556666666666655433        1        01134


Q ss_pred             eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       160 ~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .+.+|...|..++|+|+++++++++.|+++++||+..|+..+...+
T Consensus       118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen  118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence            5678999999999999999999999999999999999998765543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=3.9e-09  Score=90.53  Aligned_cols=178  Identities=11%  Similarity=0.092  Sum_probs=111.9

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCC--EEEEeCCCCCceEEEEeC
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT--VRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t--i~iwd~~~~~~~~~~~~~   81 (231)
                      +.++++|+..+|+.. .+..+.+.+....|+|+|+.+              +++.+.++.  |.+||+.++...+.....
T Consensus       225 ~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l--------------a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~  289 (435)
T PRK05137        225 RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV--------------VMSLSQGGNTDIYTMDLRSGTTTRLTDSP  289 (435)
T ss_pred             CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE--------------EEEEecCCCceEEEEECCCCceEEccCCC
Confidence            467888998877653 356677778888999987654              345555665  666688877654433333


Q ss_pred             CcceeEEEccCCCEEEEEcC----CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVTHG----SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~  154 (231)
                      .......|+||++.++...+    ..+.++|.......+..........  ..++|++..++....+   ..|+++|...
T Consensus       290 ~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~--~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        290 AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST--PVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC--eEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            44567899999997665432    2677788765544332222222222  2348888887765432   4688899755


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCee
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSED------GTLRLWQTNVGKTY  200 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d------~~v~iwd~~~~~~~  200 (231)
                      +.. ..+. +...+.+..|+|||++|+..+.+      ..+.+.++..++..
T Consensus       368 ~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        368 SGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             Cce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            442 3332 22346778999999987765542      25777788666554

>KOG2321|consensus

Probab=99.20  E-value=4.8e-10  Score=94.52  Aligned_cols=175  Identities=17%  Similarity=0.261  Sum_probs=134.6

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .-..|+-.++..|++|..|+-..+.++++..++.               .+.|+.|..||.|.+||.++...+.++....
T Consensus       153 sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  153 SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------HGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cCcceEEEEccccccccccccccccceeeeecCc---------------cceEEecccCceEEEecchhhhhheeeeccc
Confidence            3456788889999999999988899999999985               4457777889999999999988877776543


Q ss_pred             ------------cceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe--eeccceeEEEEEEecCCCCEEEEecCCCeE
Q psy6442          83 ------------VPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE--HKVPAQVHSASLLLNSERPIFVCGGEDLKM  147 (231)
Q Consensus        83 ------------~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  147 (231)
                                  .|+++.|+.+|..+.++. .+.+.++|++...++..  +....++..+.+.....+..+++ .+...+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~  296 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRIL  296 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHh
Confidence                        388999999999888764 68999999998777654  44445555555543323334444 445678


Q ss_pred             EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         148 YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       148 ~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ++||..+|+....++ .+..++.+++-|++-++.+|-++.-+..|=+
T Consensus       297 kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  297 KIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             hhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            899999998877766 4456999999999999999988888765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.1e-08  Score=87.67  Aligned_cols=196  Identities=13%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC---CCEEEEeCCCCCceEEEEeCC
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED---KTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D---~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .+.+++.+ |.....+..|...+....|+|+|+.++               ..+.+   ..|.+||+.+++.........
T Consensus       180 ~l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la---------------~~s~~~~~~~l~~~~l~~g~~~~l~~~~g  243 (430)
T PRK00178        180 TLQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIA---------------YVSFEQKRPRIFVQNLDTGRREQITNFEG  243 (430)
T ss_pred             EEEEECCC-CCCceEEecCCCceeeeeECCCCCEEE---------------EEEcCCCCCEEEEEECCCCCEEEccCCCC
Confidence            35666655 555566667778899999999976653               22222   358889998876544333444


Q ss_pred             cceeEEEccCCCEEEEE--cCC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-C--CeEEEEeCCCc
Q psy6442          83 VPNSLEISRDGTTITVT--HGS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-D--LKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d--~~i~~~d~~~~  155 (231)
                      .....+|+||++.++..  .++  .|.++|..+....+..........  ..++|++..++..+. +  ..|+++++.++
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~--~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTE--PFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCC--eEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            45578999999977643  232  677888877654433222222222  234788887665543 2  46888888776


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSED-G--TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      +... +..........+|+|||+.++..+.+ +  .|.++|+.+++... ++.  .......+|.++|++.
T Consensus       322 ~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~~~~p~~spdg~~i  388 (430)
T PRK00178        322 RAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSLDESPSVAPNGTML  388 (430)
T ss_pred             CEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCCCCCceECCCCCEE
Confidence            6332 21111223457899999988777643 3  47889998887543 332  2222345677777654

>KOG2394|consensus

Probab=99.20  E-value=3.5e-10  Score=94.60  Aligned_cols=147  Identities=17%  Similarity=0.318  Sum_probs=99.6

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEE
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVT  105 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~  105 (231)
                      ..|.++.|=|.+              ...++.+-.+|.+.++|..       +.......+....+++..+.+.      
T Consensus       220 tsvT~ikWvpg~--------------~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~------  272 (636)
T KOG2394|consen  220 SSVTCIKWVPGS--------------DSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAIL------  272 (636)
T ss_pred             cceEEEEEEeCC--------------CceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEe------
Confidence            567777776643              3446667778999999862       1111111222223333333221      


Q ss_pred             EEEC-CCcceEEee-eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEe
Q psy6442         106 FLDA-NSLELIKEH-KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG  183 (231)
Q Consensus       106 ~~d~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~  183 (231)
                      .+.. .+..++... .....++..++  +++++.||+.++|+.+++||..+.+++..++...+...|++|||||+++++|
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~F--S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAF--SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             eeeccccCCccceeEeccccccceeE--cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence            1110 011111111 11224444444  7899999999999999999999988888888888999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCeee
Q psy6442         184 SEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       184 s~d~~v~iwd~~~~~~~~  201 (231)
                      ++|.-|.||.+..+++++
T Consensus       351 GEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  351 GEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             CCcceEEEEEeccceEEE
Confidence            999999999999999875

>KOG1517|consensus

Probab=99.19  E-value=1.1e-09  Score=98.14  Aligned_cols=179  Identities=15%  Similarity=0.232  Sum_probs=118.8

Q ss_pred             CCceeeeccCCCeEeeeecccc---cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC--CceEEEE
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS--AEVQKLE   79 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~---~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~--~~~~~~~   79 (231)
                      ..+++|+-..++.+..|..+.-   .|..+.+-.             ..+...+.+|+.||.||||+-...  +....+.
T Consensus      1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN-------------e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN-------------EQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred             ceEEEEecccCceeccccCCCCCCCccceeeeec-------------ccchhheeeeccCceEEEecccccccCCceeEE
Confidence            4677888888888777765542   344444322             124567999999999999975422  1111111


Q ss_pred             ----eC-------CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCCC
Q psy6442          80 ----FG-------AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGEDL  145 (231)
Q Consensus        80 ----~~-------~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~  145 (231)
                          +.       ..-.-+.|....-.++++. -..|++||.......+.+.....  +++.+.. ...+.+++.|-.||
T Consensus      1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~-~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD-LVHGNIIAAGFADG 1231 (1387)
T ss_pred             eeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc-ccCCceEEEeecCC
Confidence                00       0112334555444555554 46889999987777666544332  2222221 12368899999999


Q ss_pred             eEEEEeCCCc---ceeeeccCCCCC--eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442         146 KMYKFDYSTG---AEIESFKGHFGP--IHCVKFSPDGE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       146 ~i~~~d~~~~---~~~~~~~~h~~~--V~~v~~spd~~-~laS~s~d~~v~iwd~~~~  197 (231)
                      .+++||.+..   ..+.....|.+.  |..+.+.+.|. .|+||+.||.|++||++..
T Consensus      1232 svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            9999998653   245667788877  99999999875 4999999999999999873

>KOG1272|consensus

Probab=99.18  E-value=5.1e-11  Score=97.94  Aligned_cols=152  Identities=11%  Similarity=0.165  Sum_probs=105.7

Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEE----------------------
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFL----------------------  107 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~----------------------  107 (231)
                      ++|..|+-++.-|.+--+|..+++....+.....+.++.|-.+.++++++....+.+|                      
T Consensus       139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFL  218 (545)
T KOG1272|consen  139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFL  218 (545)
T ss_pred             CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhccc
Confidence            3667777788888888888877776666655555555555544444444444444444                      


Q ss_pred             ------------------ECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCe
Q psy6442         108 ------------------DANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI  168 (231)
Q Consensus       108 ------------------d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V  168 (231)
                                        |.+.++.+..+.... .....  .-+|...++-.|...|++-+|...+.+++-.+..|.++|
T Consensus       219 PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm--~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  219 PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM--KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             chhheeeecccCCceEEEeechhhhhHHHHccCCccchh--hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence                              444443333332221 11112  226666677789999999999998888888888899999


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         169 HCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       169 ~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .++++.|+|+++||++.|+.++|||++......+.
T Consensus       297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             ceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            99999999999999999999999999887754433

>KOG2139|consensus

Probab=99.18  E-value=1.8e-09  Score=86.58  Aligned_cols=149  Identities=21%  Similarity=0.277  Sum_probs=107.2

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCC-EEEEEcCCeEEEEECCCcceE------------Eee
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGT-TITVTHGSCVTFLDANSLELI------------KEH  118 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~~~~~~------------~~~  118 (231)
                      .++++..|.+|+||+-.+ ++...++.  +..+.+++|.|-+. .+++++.+.|.+|........            +..
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl  190 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL  190 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence            378888999999999887 55455554  46789999999765 567788888999975432111            112


Q ss_pred             ec--cceeEEEEEEecCCCCEEEEecCC-CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         119 KV--PAQVHSASLLLNSERPIFVCGGED-LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       119 ~~--~~~~~~~~~~~~~~~~~~~~g~~d-~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ..  ..++..+.  +++++..+++++.+ ..|.+||..++..+.....--+.+.-+.||||+.+|..+.-|+..++|+..
T Consensus       191 ~~pgh~pVtsmq--wn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  191 QDPGHNPVTSMQ--WNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             eCCCCceeeEEE--EcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            22  23444444  48888888888765 579999999887654443344668889999999999999999999999766


Q ss_pred             CCCeeeeeec
Q psy6442         196 VGKTYGLWKC  205 (231)
Q Consensus       196 ~~~~~~~~~~  205 (231)
                      .......|-.
T Consensus       269 q~wt~erw~l  278 (445)
T KOG2139|consen  269 QSWTKERWIL  278 (445)
T ss_pred             ccceecceec
Confidence            5555445543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.17  E-value=4.6e-09  Score=80.18  Aligned_cols=125  Identities=14%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             eEeeeec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE
Q psy6442          17 WIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT   95 (231)
Q Consensus        17 ~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   95 (231)
                      .+..+.- ..++|.+++|+|+++.++             ++++..++.|.+||++ .+.+..+. ....+.+.|+|+|+.
T Consensus        50 ~~~~i~l~~~~~I~~~~WsP~g~~fa-------------vi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   50 PVESIELKKEGPIHDVAWSPNGNEFA-------------VIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRF  114 (194)
T ss_pred             ccceeeccCCCceEEEEECcCCCEEE-------------EEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCE
Confidence            3444432 356799999999876653             4455677899999996 44444443 356789999999998


Q ss_pred             EEEEc----CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC------CCeEEEEeCCCcceeee
Q psy6442          96 ITVTH----GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE------DLKMYKFDYSTGAEIES  160 (231)
Q Consensus        96 ~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------d~~i~~~d~~~~~~~~~  160 (231)
                      ++++.    .+.+.+||..+.+.+.....+. .  ..+.++|+|+.++++..      |..+++|+. .|+++..
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~--t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-A--TDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCCEEeeccccCc-E--EEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence            87653    3579999999887776665443 2  34456999999998764      456778876 4555543

>KOG1517|consensus

Probab=99.16  E-value=2.2e-09  Score=96.20  Aligned_cols=149  Identities=17%  Similarity=0.317  Sum_probs=98.9

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCC--cceeEEEccC-CCEEEEE-cCCeEEEEECCCcce---E---Eeeeccc
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRD-GTTITVT-HGSCVTFLDANSLEL---I---KEHKVPA  122 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~~~~-~~~~i~~~d~~~~~~---~---~~~~~~~  122 (231)
                      +.|+++|.-+.|+|||.....+...+..+.  .++++...-. +..++++ .||.+++||.+....   +   +.+....
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            445556667999999999988887776653  4555554332 4566665 579999999764332   2   2233333


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee--eeccCCC--C-CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI--ESFKGHF--G-PIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~--~~~~~h~--~-~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ++....+...+.+ .+++|+.+|.|++||++.....  -+...|-  + ..+++..+++..++|+|+. +.|+||++.-.
T Consensus      1258 ~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             cceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            3444444222333 4899999999999999864222  1222332  4 5899999999999999998 99999998543


Q ss_pred             Ceeeeee
Q psy6442         198 KTYGLWK  204 (231)
Q Consensus       198 ~~~~~~~  204 (231)
                       .....+
T Consensus      1336 -~l~~~k 1341 (1387)
T KOG1517|consen 1336 -QLNIIK 1341 (1387)
T ss_pred             -hhcccc
Confidence             333334

>KOG1587|consensus

Probab=99.16  E-value=2.1e-09  Score=93.13  Aligned_cols=182  Identities=19%  Similarity=0.204  Sum_probs=120.6

Q ss_pred             CCcCCCceeeeccCCCe--Eeee----ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc
Q psy6442           1 MCVDGKPMLRQGDTGDW--IGTF----EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~--i~~l----~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~   74 (231)
                      |+.+|+|-+||...+..  ...+    ..|..+|+.+.|..+.            . +..++|+|.||+|..|+++--..
T Consensus       261 G~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~------------~-~~~f~s~ssDG~i~~W~~~~l~~  327 (555)
T KOG1587|consen  261 GCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE------------H-NTEFFSLSSDGSICSWDTDMLSL  327 (555)
T ss_pred             eccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC------------C-CCceEEEecCCcEeeeecccccc
Confidence            57899999999976654  2222    3688999999997642            1 35689999999999998764322


Q ss_pred             -e-----EEEE-------eCCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcce-E-------Eeeec-cceeEEEEEE
Q psy6442          75 -V-----QKLE-------FGAVPNSLEISRDGT-TITV-THGSCVTFLDANSLEL-I-------KEHKV-PAQVHSASLL  130 (231)
Q Consensus        75 -~-----~~~~-------~~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~-~-------~~~~~-~~~~~~~~~~  130 (231)
                       .     ....       -...++++.|.+... .+++ +..|.|...+...... .       ..+.. ..++..+.. 
T Consensus       328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~-  406 (555)
T KOG1587|consen  328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR-  406 (555)
T ss_pred             chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeec-
Confidence             1     0011       012467888887665 3444 4567776644322211 1       11111 234444433 


Q ss_pred             ecCCCC-EEEEecCCCeEEEEeCC-CcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCC
Q psy6442         131 LNSERP-IFVCGGEDLKMYKFDYS-TGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       131 ~~~~~~-~~~~g~~d~~i~~~d~~-~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~  198 (231)
                       +|-+. ++++++ |-++++|... ...++..+..+...|++++|||-. ..|+++..||.|.|||+....
T Consensus       407 -nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  407 -NPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             -CCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence             55444 344444 9999999887 556677788888899999999975 588999999999999986544

>KOG4190|consensus

Probab=99.15  E-value=1.1e-10  Score=98.19  Aligned_cols=172  Identities=19%  Similarity=0.304  Sum_probs=119.1

Q ss_pred             EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-------CceEEEE-eCCcceeEEE
Q psy6442          18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-------AEVQKLE-FGAVPNSLEI   89 (231)
Q Consensus        18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-------~~~~~~~-~~~~~~~v~~   89 (231)
                      ++.|.||+.+|..+.--               .+...++++|.|+|||+|.++..       .|..+.+ +..++.++.+
T Consensus       728 L~nf~GH~~~iRai~Ai---------------dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf  792 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAI---------------DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF  792 (1034)
T ss_pred             eecccCcHHHhHHHHhc---------------ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee
Confidence            56678888888766322               24556899999999999998642       2333332 4567788888


Q ss_pred             ccCCCEEEEEcCCeEEEEECCCcceEEeee-cc--ceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCCcceeeec----
Q psy6442          90 SRDGTTITVTHGSCVTFLDANSLELIKEHK-VP--AQVHSASLLLNSERPIFVCG-GEDLKMYKFDYSTGAEIESF----  161 (231)
Q Consensus        90 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~~~~~~~~----  161 (231)
                      -.+-+.+ +++++.+++||.--...+.... .+  .....+....+-+..+++.| +...+++++|.+..+-...+    
T Consensus       793 L~~lr~i-~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn  871 (1034)
T KOG4190|consen  793 LADLRSI-ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN  871 (1034)
T ss_pred             eecccee-eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc
Confidence            7775554 5678899999976555443221 11  11111222223344455555 67789999998877644333    


Q ss_pred             -cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         162 -KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       162 -~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                       .+..+.+++++..|.|+.+|.+-.+|+|.+-|.++|+.++.|+-
T Consensus       872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence             34556789999999999999999999999999999999998864

>KOG0290|consensus

Probab=99.15  E-value=2.9e-09  Score=83.13  Aligned_cols=168  Identities=14%  Similarity=0.160  Sum_probs=116.3

Q ss_pred             CcCCCceeeeccCCCe---EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           2 CVDGKPMLRQGDTGDW---IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~---i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      |.|-|+.+|+..+|.-   --.|-.|...|+.++|..++.              +.++|+|.||++|++|+++.+--..+
T Consensus       170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--------------~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--------------DVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--------------ceEEEecCCCcEEEEEecccccceEE
Confidence            6788999999998732   334778999999999998642              45899999999999999987654333


Q ss_pred             EeC----CcceeEEEccCCCEEEE--E-cCCeEEEEECCCcc-eEEeee-ccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          79 EFG----AVPNSLEISRDGTTITV--T-HGSCVTFLDANSLE-LIKEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        79 ~~~----~~~~~v~~~~~~~~~~~--~-~~~~i~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      .-.    .+...++|++....+.+  . ....+.+.|++... .+.+.+ ....++.+.+.++ ....+.++++|....+
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh-S~~hictaGDD~qali  314 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH-SSSHICTAGDDCQALI  314 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC-CCceeeecCCcceEEE
Confidence            322    24567888887664332  2 34678888977543 233332 3456777777543 4456888999999999


Q ss_pred             EeCCCcce------eeeccCCCCCeeEEEEcCC-CCEEEEeeC
Q psy6442         150 FDYSTGAE------IESFKGHFGPIHCVKFSPD-GELYASGSE  185 (231)
Q Consensus       150 ~d~~~~~~------~~~~~~h~~~V~~v~~spd-~~~laS~s~  185 (231)
                      ||+.+...      +-.+. -.++|+.+.|+|. +..++.|..
T Consensus       315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            99965432      11122 4578999999985 556666553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.4e-08  Score=87.11  Aligned_cols=175  Identities=12%  Similarity=0.091  Sum_probs=104.7

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .++++|+..+|+... +..+.+...+..|+|+|+.+              +++.+.++  .|.+||+.+++.........
T Consensus       228 ~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l--------------~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~  292 (433)
T PRK04922        228 SAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL--------------ALTLSRDGNPEIYVMDLGSRQLTRLTNHFG  292 (433)
T ss_pred             cEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE--------------EEEEeCCCCceEEEEECCCCCeEECccCCC
Confidence            357777777665432 33344445567788876554              23445555  58899998876543333333


Q ss_pred             cceeEEEccCCCEEEEEcC--C--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCc
Q psy6442          83 VPNSLEISRDGTTITVTHG--S--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~  155 (231)
                      .....+|+||++.++...+  +  .+..++..+.+..+.........  ...++|++..++..+.+   ..|++||+.++
T Consensus       293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~--~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA--RASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc--CEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            4567899999997765432  2  46666765544322221111121  23448888887765433   36999999777


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCC
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGK  198 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~  198 (231)
                      +.. .+. +........|+|||++++..+.+   ..|.++++..+.
T Consensus       371 ~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        371 SVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            644 332 22234567899999987776653   357777875443

>KOG1188|consensus

Probab=99.15  E-value=3.4e-10  Score=89.89  Aligned_cols=178  Identities=16%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             cCCCceeeeccCCCe-Eeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC----ceE
Q psy6442           3 VDGKPMLRQGDTGDW-IGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA----EVQ   76 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~-i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~----~~~   76 (231)
                      .|..|.|||...-+. ++.|. .|.+-|+++.|.|.              +...|+|||.||-|.++|+....    .+.
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~--------------~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS--------------DPNLLLSGSVDGLVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             CceEEEEEEeccccchhhhhhhhccCcceeEEecCC--------------CCCeEEeecccceEEeeecCCCcchhhHHH
Confidence            456789999965554 77764 69999999999995              56789999999999999986542    234


Q ss_pred             EEEeCCcceeEEEccCC--CEEEEEcCCeEEEEECCCcceEEeeecc-c--------eeEEEE--EEecCCCCEEEEecC
Q psy6442          77 KLEFGAVPNSLEISRDG--TTITVTHGSCVTFLDANSLELIKEHKVP-A--------QVHSAS--LLLNSERPIFVCGGE  143 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~--------~~~~~~--~~~~~~~~~~~~g~~  143 (231)
                      .+.....+-.+.|..++  +...+++.....+|++..........-+ .        ......  .....+...++.++.
T Consensus       207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~  286 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT  286 (376)
T ss_pred             hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence            45567788899999988  5666788888999998766543222111 0        000001  111233444444444


Q ss_pred             -CCeEEEEeC---CCc---ceeeeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         144 -DLKMYKFDY---STG---AEIESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       144 -d~~i~~~d~---~~~---~~~~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                       -++..++.+   .++   +.+..+.| |...|+++.|.-.+.++.||++||.+.+|..
T Consensus       287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence             343333332   222   34455666 7788899999988999999999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.13  E-value=1.9e-10  Score=64.15  Aligned_cols=38  Identities=45%  Similarity=0.958  Sum_probs=36.2

Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +++.++.+|..+|++|+|+|++++|+|++.|++|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0644|consensus

Probab=99.13  E-value=1.9e-11  Score=106.70  Aligned_cols=119  Identities=22%  Similarity=0.478  Sum_probs=94.6

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCC
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGT   94 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~   94 (231)
                      +.+..|.||...|+|+.|...               +.+++|++.|..+|||...++.++..+.- ...+..        
T Consensus       181 k~ikrLlgH~naVyca~fDrt---------------g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditd--------  237 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRT---------------GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITD--------  237 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccc---------------cceEeecCccceeeeeeccchhhhccCCCCccccch--------
Confidence            456668899999999988765               55689999999999999887776544321 111111        


Q ss_pred             EEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEc
Q psy6442          95 TITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS  174 (231)
Q Consensus        95 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~s  174 (231)
                                                        ...+.+..++++++.|..|++|-+..+.++..+.||+++|++++|+
T Consensus       238 ----------------------------------lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs  283 (1113)
T KOG0644|consen  238 ----------------------------------LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS  283 (1113)
T ss_pred             ----------------------------------hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence                                              1114455668889999999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCC
Q psy6442         175 PDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       175 pd~~~laS~s~d~~v~iwd~~  195 (231)
                      |-.    +.+.||++++||.+
T Consensus       284 P~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  284 PRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             ccc----cCCCCCceEecccc
Confidence            975    78899999999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3.1e-08  Score=85.19  Aligned_cols=195  Identities=14%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCc
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGAV   83 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~   83 (231)
                      ++.+++.+ |...+.+..+...+.+..|+|||+.++.              +...++  .|.+||+.+++..........
T Consensus       199 ~l~i~d~d-G~~~~~l~~~~~~~~~p~wSPDG~~La~--------------~s~~~g~~~L~~~dl~tg~~~~lt~~~g~  263 (448)
T PRK04792        199 QLMIADYD-GYNEQMLLRSPEPLMSPAWSPDGRKLAY--------------VSFENRKAEIFVQDIYTQVREKVTSFPGI  263 (448)
T ss_pred             EEEEEeCC-CCCceEeecCCCcccCceECCCCCEEEE--------------EEecCCCcEEEEEECCCCCeEEecCCCCC
Confidence            44455533 4444556666778888999998766532              222223  578889887765433333444


Q ss_pred             ceeEEEccCCCEEEEE--cCC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEEEEeCCCcc
Q psy6442          84 PNSLEISRDGTTITVT--HGS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMYKFDYSTGA  156 (231)
Q Consensus        84 ~~~v~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~~~d~~~~~  156 (231)
                      ....+|+||++.++..  .++  .|.++|..+.+..+..........  ..++|+++.++..+.   ...|+++|..+++
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~--p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTE--PSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccc--eEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4578999999977653  233  577788776554333222221222  234788887765543   2468888887765


Q ss_pred             eeee-ccCCCCCeeEEEEcCCCCEEEEeeC-CCc--EEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         157 EIES-FKGHFGPIHCVKFSPDGELYASGSE-DGT--LRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       157 ~~~~-~~~h~~~V~~v~~spd~~~laS~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      .... +.++.  ....+|+|||++|+..+. ++.  |.++|+.+++... ++.  .......++.++|.+
T Consensus       342 ~~~Lt~~g~~--~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~--~~~d~~ps~spdG~~  406 (448)
T PRK04792        342 VSRLTFEGEQ--NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS--TRLDESPSVAPNGTM  406 (448)
T ss_pred             EEEEecCCCC--CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC--CCCCCCceECCCCCE
Confidence            4322 23332  345789999998877654 343  4556888877543 332  112223356666654

>KOG4227|consensus

Probab=99.11  E-value=3.7e-09  Score=85.68  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC------CCCceEEEE--eCCcceeEEEccC
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS------ASAEVQKLE--FGAVPNSLEISRD   92 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~------~~~~~~~~~--~~~~~~~v~~~~~   92 (231)
                      +.+|.|+|.++.|+.+               ++.|++++.|..+++|.+.      ..+++....  +...+.+++|...
T Consensus        52 ~~~H~GCiNAlqFS~N---------------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~  116 (609)
T KOG4227|consen   52 VREHTGCINALQFSHN---------------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE  116 (609)
T ss_pred             hhhhccccceeeeccC---------------CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC
Confidence            5699999999999975               5668999999999999874      224444433  3468999999988


Q ss_pred             CCEEEEE-cCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eeee--ccCCC
Q psy6442          93 GTTITVT-HGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIES--FKGHF  165 (231)
Q Consensus        93 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~--~~~h~  165 (231)
                      ...++.+ .++++.+-|+.+.+.+-.+....   .+..  +..+|....+++.+.++.+.+||.+..+ .+..  +-...
T Consensus       117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~--m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~  194 (609)
T KOG4227|consen  117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYH--MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG  194 (609)
T ss_pred             CeeEecCCCcceeEeeecccceeeeeecccCcccceee--cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence            8777765 35788888888777665543322   3333  3336777789999999999999997655 2222  12233


Q ss_pred             CCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCC
Q psy6442         166 GPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       166 ~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ....++.|+|. ..+|++++..+-+.+||.+..+
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence            45678999995 6789999999999999986544

>KOG0974|consensus

Probab=99.09  E-value=1.2e-09  Score=97.51  Aligned_cols=138  Identities=20%  Similarity=0.373  Sum_probs=103.6

Q ss_pred             CcCCCceeeeccCCCeEe-eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~-~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +.=+.+.+|.+. +.... .+.||.|.++.+.++.+               +.+++|+|.|+++|+|++.+.+...    
T Consensus       152 sv~~~iivW~~~-~dn~p~~l~GHeG~iF~i~~s~d---------------g~~i~s~SdDRsiRlW~i~s~~~~~----  211 (967)
T KOG0974|consen  152 SVFGEIIVWKPH-EDNKPIRLKGHEGSIFSIVTSLD---------------GRYIASVSDDRSIRLWPIDSREVLG----  211 (967)
T ss_pred             cccccEEEEecc-ccCCcceecccCCceEEEEEccC---------------CcEEEEEecCcceeeeecccccccC----
Confidence            345778999987 44444 48999999999999887               4568999999999999998865432    


Q ss_pred             CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442          81 GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~  160 (231)
                           ...|           +-..++|                  .+++  .+.  .++++++|.+.++|+. .++.+..
T Consensus       212 -----~~~f-----------gHsaRvw------------------~~~~--~~n--~i~t~gedctcrvW~~-~~~~l~~  252 (967)
T KOG0974|consen  212 -----CTGF-----------GHSARVW------------------ACCF--LPN--RIITVGEDCTCRVWGV-NGTQLEV  252 (967)
T ss_pred             -----cccc-----------cccceeE------------------EEEe--ccc--eeEEeccceEEEEEec-ccceehh
Confidence                 0111           1112223                  2333  334  6899999999999965 4455668


Q ss_pred             ccCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         161 FKGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       161 ~~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +++|. .-|..++..++...++|++.|+.+++|+.....
T Consensus       253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            88886 569999999999999999999999999985543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=5.8e-08  Score=83.05  Aligned_cols=202  Identities=12%  Similarity=0.065  Sum_probs=117.3

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~   82 (231)
                      ..+++.+.+ |...+.|..+.+.+.+-.|+|||+.++            .+++...++  .|.+.++..++..+...+..
T Consensus       165 ~~l~~~d~d-G~~~~~lt~~~~~~~sP~wSPDG~~~~------------~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g  231 (428)
T PRK01029        165 GELWSVDYD-GQNLRPLTQEHSLSITPTWMHIGSGFP------------YLYVSYKLGVPKIFLGSLENPAGKKILALQG  231 (428)
T ss_pred             ceEEEEcCC-CCCceEcccCCCCcccceEccCCCceE------------EEEEEccCCCceEEEEECCCCCceEeecCCC
Confidence            356666654 444555665666677889999975421            122333333  46667888776655555555


Q ss_pred             cceeEEEccCCCEEEEEcC--C--e--EEEEECCCc---ceEEeeeccceeEEEEEEecCCCCEEEEec-CCC--eEEEE
Q psy6442          83 VPNSLEISRDGTTITVTHG--S--C--VTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGG-EDL--KMYKF  150 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~--~--~--i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~--~i~~~  150 (231)
                      .....+|+|||+.++...+  +  .  +..|+....   ...+........ .....++|++..++..+ .++  .|+++
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~-~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT-QGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC-cCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            5667899999987765431  2  2  333555432   212222111111 11234489998777654 344  46666


Q ss_pred             eCCC-cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         151 DYST-GAEIESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       151 d~~~-~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ++.. +.....+..+...+....|||||+.|+..+.+   ..|.+||+.+++...+...  +......+|.++|++
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wSpDG~~  384 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWAIDSLH  384 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEECCCCCE
Confidence            6542 23344444455567788999999988876643   4689999999987655432  122234556666654

>KOG2139|consensus

Probab=99.06  E-value=1.1e-08  Score=82.12  Aligned_cols=182  Identities=17%  Similarity=0.259  Sum_probs=118.2

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC-CCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEE
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE-DKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITV   98 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~   98 (231)
                      .+|| -.|.++.|++||.               .|+++|. |..|+|||..++.++...... +.+.-+.|+||+..+++
T Consensus       192 ~pgh-~pVtsmqwn~dgt---------------~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGT---------------ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             CCCC-ceeeEEEEcCCCC---------------EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            3466 6899999999854               4666665 468999999999887666443 45678899999997765


Q ss_pred             -EcCCeEEEEECCCcceEEee-eccceeEEEEEEecCCCCEEEEe-cCCCeEEEE--eCCCcc-----------eeeec-
Q psy6442          99 -THGSCVTFLDANSLELIKEH-KVPAQVHSASLLLNSERPIFVCG-GEDLKMYKF--DYSTGA-----------EIESF-  161 (231)
Q Consensus        99 -~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~--d~~~~~-----------~~~~~-  161 (231)
                       ..+...++|+........+. -.+..+...++  +|.|++++.. +....++-.  +.+.+.           ++..+ 
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacW--spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACW--SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeee--cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence             56888899965433322222 22335555555  7777765543 333334322  211111           11111 


Q ss_pred             -----cC---CCCCeeEEEEcCCCCEEEEeeCCCc--------EEEEeCCCCCeeeee--eccCCcccCCCCCCccc
Q psy6442         162 -----KG---HFGPIHCVKFSPDGELYASGSEDGT--------LRLWQTNVGKTYGLW--KCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       162 -----~~---h~~~V~~v~~spd~~~laS~s~d~~--------v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~  220 (231)
                           .+   -.+++.+++|.|.|.+||+--..+.        |.+||.+....+.+-  ....+..+.+|+|.+..
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~  410 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK  410 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence                 11   1467889999999999998765444        678998887777665  55667778888887744

>KOG1334|consensus

Probab=99.03  E-value=1.2e-09  Score=90.41  Aligned_cols=196  Identities=18%  Similarity=0.262  Sum_probs=136.6

Q ss_pred             CCcCCCceeeec-cCCCe--EeeeecccccEEEEEECCCC-ceeEeccccccc---------------------------
Q psy6442           1 MCVDGKPMLRQG-DTGDW--IGTFEGHKGCVWGVDINKDA-SKAASGAADFQA---------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~-~~g~~--i~~l~gH~~~V~~~~~~~~~-~~~~s~~~d~~~---------------------------   49 (231)
                      ++.||+||+-.. .+|.+  ...+..|.+.|+.++.-|+. ..+.+.+.|..+                           
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             ccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence            367899988776 34544  44577899999999998875 566666554221                           


Q ss_pred             -------cCCCEEEEEeCCCCEEEEeCCCCCce------EEE-------EeCCcceeEEEccCCCEEEEEc-CCeEEEEE
Q psy6442          50 -------KNNTRLISCAEDKTVRLWDVSASAEV------QKL-------EFGAVPNSLEISRDGTTITVTH-GSCVTFLD  108 (231)
Q Consensus        50 -------~~~~~l~s~s~D~ti~iwd~~~~~~~------~~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d  108 (231)
                             ++...+++++.|.-+++||.+.-...      .++       .....+++++++.++.-+.++. +..|.++.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence                   24457888999999999987643211      111       1124578999997777666654 45666664


Q ss_pred             CCCcce------------EEe-eec---cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEE
Q psy6442         109 ANSLEL------------IKE-HKV---PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK  172 (231)
Q Consensus       109 ~~~~~~------------~~~-~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~  172 (231)
                      .....-            .+. ++.   ...+..+-+ +.|...++++|++.|.|.+|+-.+++++.-++|...-|+||.
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF-fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF-FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeee-ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence            221110            011 221   122333333 467788999999999999999999999999998878999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         173 FSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       173 ~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      =+|--.+|||.+-|..||||...+.
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCcc
Confidence            9999999999999999999997443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=5.7e-07  Score=74.28  Aligned_cols=199  Identities=17%  Similarity=0.190  Sum_probs=129.7

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe---------CCCCEEEEeCCCCCc
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA---------EDKTVRLWDVSASAE   74 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s---------~D~ti~iwd~~~~~~   74 (231)
                      .++|.+.|..+++.+.++.....+-. + ++||++.+.              ++.+         .+..|.+||..+.+.
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~ly--------------va~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFA--------------HASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEE--------------EEeccccccccCCCCCEEEEEECccCcE
Confidence            48899999999999998875444332 3 788865542              3333         478999999999999


Q ss_pred             eEEEEeCCcce--------eEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeE------------------
Q psy6442          75 VQKLEFGAVPN--------SLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVH------------------  125 (231)
Q Consensus        75 ~~~~~~~~~~~--------~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~------------------  125 (231)
                      +..+..+..+.        ..+++||++.+++..   +..+.++|+...+.+.++..+....                  
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            99998765544        889999999998764   5789999998887776654332100                  


Q ss_pred             --------------EEEE-E-------ecC-----CCCEEEEecCCCeEEEEeCCCc-----ceeeeccC-------CCC
Q psy6442         126 --------------SASL-L-------LNS-----ERPIFVCGGEDLKMYKFDYSTG-----AEIESFKG-------HFG  166 (231)
Q Consensus       126 --------------~~~~-~-------~~~-----~~~~~~~g~~d~~i~~~d~~~~-----~~~~~~~~-------h~~  166 (231)
                                    ...+ .       ..|     ++..+....+ ++|+..|+...     .....+..       ..+
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence                          0000 0       011     3444333333 78888885322     22222211       112


Q ss_pred             CeeEEEEcCCCCEEEEee----------CCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         167 PIHCVKFSPDGELYASGS----------EDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       167 ~V~~v~~spd~~~laS~s----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      .+--++++|+++.+....          ..+.|.++|..+++....+..  +.-+-.|++..+|+
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgk  311 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAK  311 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCC
Confidence            222389999987655532          225799999999999887764  55566677777776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.6e-07  Score=79.15  Aligned_cols=178  Identities=15%  Similarity=0.181  Sum_probs=101.6

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC--CCCCceEEEE-eC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV--SASAEVQKLE-FG   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~--~~~~~~~~~~-~~   81 (231)
                      .++++|+..+|+... +....+.+....|+|||+.+              +++.+.|+...||.+  ..+.. ..+. ..
T Consensus       220 ~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l--------------a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~  283 (427)
T PRK02889        220 PVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL--------------AVALSRDGNSQIYTVNADGSGL-RRLTQSS  283 (427)
T ss_pred             cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE--------------EEEEccCCCceEEEEECCCCCc-EECCCCC
Confidence            347788887776533 33334555678888886553              345667787777754  44432 3332 22


Q ss_pred             CcceeEEEccCCCEEEE-Ec-CCeEEE--EECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCC---eEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITV-TH-GSCVTF--LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL---KMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~-~~-~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~---~i~~~d~~~  154 (231)
                      .......|+||++.++. +. ++...+  ++.......+. ...... .....++|+++.++..+.++   .|++||+.+
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~-~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSY-NTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCC-cCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence            34567789999997664 32 233444  44444332221 111111 11233588998887665443   699999987


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC-c--EEEEeCCCCCeeeee
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDG-T--LRLWQTNVGKTYGLW  203 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~-~--v~iwd~~~~~~~~~~  203 (231)
                      ++.. .+..+ .......|+|||++|+.++.++ .  +.+-++ .|+.....
T Consensus       362 g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l  410 (427)
T PRK02889        362 GQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL  410 (427)
T ss_pred             CCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence            7643 33222 2346789999999888777544 2  444455 45444433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.6e-09  Score=60.33  Aligned_cols=39  Identities=33%  Similarity=0.635  Sum_probs=35.4

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD   68 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd   68 (231)
                      |+++.+|++|++.|.+++|+|+               +..|+|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~---------------~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPD---------------GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETT---------------SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecc---------------cccceeeCCCCEEEEEC
Confidence            5788999999999999999997               45689999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.97  E-value=2.7e-07  Score=78.63  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=103.7

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .++++|+..+|+... +..+.+.+.+..|+|+++.++              ++.+.++  .|.+||+.++..........
T Consensus       214 ~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~--------------~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  278 (417)
T TIGR02800       214 PEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA--------------VSLSKDGNPDIYVMDLDGKQLTRLTNGPG  278 (417)
T ss_pred             cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE--------------EEECCCCCccEEEEECCCCCEEECCCCCC
Confidence            467888887776543 344566677788999876542              3444443  58888988765443333333


Q ss_pred             cceeEEEccCCCEEEEE-c-C--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCC---eEEEEeCCCc
Q psy6442          83 VPNSLEISRDGTTITVT-H-G--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL---KMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~-~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~---~i~~~d~~~~  155 (231)
                      ......|+|+++.++.. . .  ..+.+++....+..+.........  ...+++++..++..+.+.   +|+++|+.++
T Consensus       279 ~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~--~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       279 IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA--SPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc--CeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            34567899999876543 2 2  257777876554332221111222  233478888888776654   7899998775


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeC
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQT  194 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~  194 (231)
                      .. ..+... ......+|+||+++|+..+.++   .+.+.+.
T Consensus       357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            43 223222 2234568999999887776654   3445554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497|consensus

Probab=98.96  E-value=3.2e-09  Score=84.27  Aligned_cols=175  Identities=15%  Similarity=0.242  Sum_probs=117.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      |..|+.|.+|+...-+.-+.....+..+.++.|+|+|+.+              |.+...|-.|-+|.+.+.++...-.-
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhi--------------L~tseF~lriTVWSL~t~~~~~~~~p  132 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHI--------------LLTSEFDLRITVWSLNTQKGYLLPHP  132 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceE--------------eeeecceeEEEEEEeccceeEEeccc
Confidence            4578999999999889999888888999999999998664              67888899999999988776543333


Q ss_pred             CCcceeEEEccCCCEEEEEcC-CeEEEEEC---CCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          81 GAVPNSLEISRDGTTITVTHG-SCVTFLDA---NSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +..+..++++||+++.++..- .+..++++   .....++.++.+. ....+.  ++|++..++.         ||.-..
T Consensus       133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie--WsPdg~~laV---------wd~~Le  201 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE--WSPDGNWLAV---------WDNVLE  201 (447)
T ss_pred             ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce--ECCCCcEEEE---------ecchhh
Confidence            456788999999998765422 22222221   2223344444432 222223  3677665554         442211


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ..+..++ ..-.+..++|+|-+++|+.|+.|+.+||-|--+-|++.
T Consensus       202 ykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  202 YKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             heeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence            1111111 11347789999999999999999999998866655553

>KOG2321|consensus

Probab=98.90  E-value=1e-07  Score=80.72  Aligned_cols=162  Identities=17%  Similarity=0.304  Sum_probs=107.2

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce---------------------------
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV---------------------------   75 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~---------------------------   75 (231)
                      +|...-..+..+|||+++              ++||-+--.||+||+..-..-                           
T Consensus        49 e~p~ast~ik~s~DGqY~--------------lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~  114 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYL--------------LATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN  114 (703)
T ss_pred             CCccccceeEecCCCcEE--------------EEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec
Confidence            466677788889998875              667777778888887432110                           


Q ss_pred             -EEEEe------------CCcceeEEEccCCC-EEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEE
Q psy6442          76 -QKLEF------------GAVPNSLEISRDGT-TITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        76 -~~~~~------------~~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  140 (231)
                       +++++            +..-.+++++.... .++++.+..+.-+++..+..+.++... ..++.+.+  ++.+.++++
T Consensus       115 DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i--n~~hgLla~  192 (703)
T KOG2321|consen  115 DRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI--NEEHGLLAC  192 (703)
T ss_pred             CceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee--cCccceEEe
Confidence             11111            11112233322222 223344455555666666666666554 34554444  788889999


Q ss_pred             ecCCCeEEEEeCCCcceeeecc------CCCC-----CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         141 GGEDLKMYKFDYSTGAEIESFK------GHFG-----PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~~~~~~~------~h~~-----~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      |+.++.+..||.+..+...++.      .|.+     .|++++|+.+|-.++.|..+|.|.|||+++.++.
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            9999999999998766554432      2333     4999999999999999999999999999988875

>KOG1240|consensus

Probab=98.90  E-value=1e-07  Score=86.88  Aligned_cols=188  Identities=18%  Similarity=0.172  Sum_probs=119.2

Q ss_pred             CCcCCCceeeecc-----CC--CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-
Q psy6442           1 MCVDGKPMLRQGD-----TG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~-----~g--~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-   72 (231)
                      ||.||+|++|+..     .|  +...+|.--..++.++..-+               +++.+|.++.||.|++.++..- 
T Consensus      1067 gS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---------------~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1067 GSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---------------NGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred             ecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---------------CCCeEEEEcCCCeEEEEEccccc
Confidence            6899999999963     11  22222332233444443333               4667888899999999988651 


Q ss_pred             -Cc-----eEEEEe--CCcceeE-EEccC-C--CEEEEEcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCE
Q psy6442          73 -AE-----VQKLEF--GAVPNSL-EISRD-G--TTITVTHGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPI  137 (231)
Q Consensus        73 -~~-----~~~~~~--~~~~~~v-~~~~~-~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  137 (231)
                       +.     .+....  .+.+.++ ++... +  ..+++...+.+..||.+......+.+.+.   -+..  +..++.+..
T Consensus      1132 ~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS--i~idp~~~W 1209 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS--IVIDPWCNW 1209 (1431)
T ss_pred             cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE--EEecCCceE
Confidence             11     111111  1222222 22211 2  23445667889999998877766654432   2333  344888889


Q ss_pred             EEEecCCCeEEEEeCCCcceeeecc-CCCCCeeEEEEcCCC---CEEEEe-e-CCCcEEEEeCCCCCeee-eeec
Q psy6442         138 FVCGGEDLKMYKFDYSTGAEIESFK-GHFGPIHCVKFSPDG---ELYASG-S-EDGTLRLWQTNVGKTYG-LWKC  205 (231)
Q Consensus       138 ~~~g~~d~~i~~~d~~~~~~~~~~~-~h~~~V~~v~~spd~---~~laS~-s-~d~~v~iwd~~~~~~~~-~~~~  205 (231)
                      ++.|...|.+-+||++-+.++...+ .+..+++.|...|-.   ...+++ + ..+.|.+|+..+|.-.. +|..
T Consensus      1210 lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence            9999999999999999888876653 355889999888853   344444 3 68889999999886433 4544

>KOG1310|consensus

Probab=98.90  E-value=4.3e-08  Score=82.69  Aligned_cols=186  Identities=19%  Similarity=0.294  Sum_probs=122.9

Q ss_pred             CCcCCCceeeeccCCCeEeee-ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-----
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-----   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l-~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-----   74 (231)
                      ||+|-.+.+|+...-++++.. .||.+.|+++.|-|..             ++..++||+.|+.|+++|+.+.+.     
T Consensus        68 GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-------------nnriv~sgAgDk~i~lfdl~~~~~~~~d~  134 (758)
T KOG1310|consen   68 GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-------------NNRIVLSGAGDKLIKLFDLDSSKEGGMDH  134 (758)
T ss_pred             cCCcceEEeecchhcceeeeeecccccceeEEeeeccC-------------CCeEEEeccCcceEEEEeccccccccccc
Confidence            578889999999988887776 5999999999998863             467799999999999999975221     


Q ss_pred             -----eEEE-EeCCcceeEEEccCCCEE--EEEcCCeEEEEECCCcceEEeee-c--------cceeEEEEEEecCC-CC
Q psy6442          75 -----VQKL-EFGAVPNSLEISRDGTTI--TVTHGSCVTFLDANSLELIKEHK-V--------PAQVHSASLLLNSE-RP  136 (231)
Q Consensus        75 -----~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~~~~-~--------~~~~~~~~~~~~~~-~~  136 (231)
                           .... .+...+..++..|++...  .++.+++++.+|++....-.... .        +.-+...++..+|. ..
T Consensus       135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~  214 (758)
T KOG1310|consen  135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY  214 (758)
T ss_pred             CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence                 1111 123567788888988543  45678999999988643322111 0        11122223333554 44


Q ss_pred             EEEEecCCCeEEEEeCCC--------cc----------eeeec-cCCC----C-------CeeEEEEcCCCC-EEEEeeC
Q psy6442         137 IFVCGGEDLKMYKFDYST--------GA----------EIESF-KGHF----G-------PIHCVKFSPDGE-LYASGSE  185 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~--------~~----------~~~~~-~~h~----~-------~V~~v~~spd~~-~laS~s~  185 (231)
                      +++.|+.+.-.++||.+.        +.          .+..| .+|-    +       -++-+.|+|+|. +|++-+.
T Consensus       215 ~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g  294 (758)
T KOG1310|consen  215 YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG  294 (758)
T ss_pred             eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC
Confidence            688899998888998311        11          01111 2332    1       145688999986 5555554


Q ss_pred             CCcEEEEeCCCCCee
Q psy6442         186 DGTLRLWQTNVGKTY  200 (231)
Q Consensus       186 d~~v~iwd~~~~~~~  200 (231)
                       ..|.++|+..++..
T Consensus       295 -EhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  295 -EHVYLFDVNEDKSP  308 (758)
T ss_pred             -eEEEEEeecCCCCc
Confidence             45999999888754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=1.2e-06  Score=75.04  Aligned_cols=173  Identities=16%  Similarity=0.149  Sum_probs=96.7

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCc
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGAV   83 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~   83 (231)
                      ++++++..+|+... +....+.+....|+|+|+.++              ++.+.++  .|.+||+.+++..........
T Consensus       224 ~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la--------------~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~  288 (430)
T PRK00178        224 RIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA--------------FVLSKDGNPEIYVMDLASRQLSRVTNHPAI  288 (430)
T ss_pred             EEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE--------------EEEccCCCceEEEEECCCCCeEEcccCCCC
Confidence            45566666664322 222233444567777765442              3444444  577789988765433223334


Q ss_pred             ceeEEEccCCCEEEEEcC----CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCcc
Q psy6442          84 PNSLEISRDGTTITVTHG----SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTGA  156 (231)
Q Consensus        84 ~~~v~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~~  156 (231)
                      .....|+||+..++...+    ..+..++..+.+..+.. ...... ....++|++..++.....   ..|+++|+.+++
T Consensus       289 ~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        289 DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYN-ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc-cceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            566789999997665432    25667777655433221 111111 112347888887765432   358889988765


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCEEEEeeCC-C--cEEEEeCCCC
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGELYASGSED-G--TLRLWQTNVG  197 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~laS~s~d-~--~v~iwd~~~~  197 (231)
                      .. .+. +........|+|||++++..+.+ +  .|.+.++..+
T Consensus       367 ~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        367 VR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            42 222 11122356899999988776643 3  3666677433

>KOG4227|consensus

Probab=98.87  E-value=1.3e-07  Score=76.92  Aligned_cols=196  Identities=16%  Similarity=0.118  Sum_probs=131.3

Q ss_pred             CCcCCCceeeecc------CCCeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGD------TGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~------~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      |+.|-.++||..+      +-+.|.... .|...|+++.|+..               +..|++++.+++|..-|+.+.+
T Consensus        74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~---------------N~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE---------------NRFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---------------CeeEecCCCcceeEeeecccce
Confidence            5788889999974      334555332 35689999999875               5678999999999999999988


Q ss_pred             ceEEEEeCC---cceeEEEccCCCEEEE-EcCCeEEEEECCCcc-eEEe---eeccceeEEEEEEecCCCC-EEEEecCC
Q psy6442          74 EVQKLEFGA---VPNSLEISRDGTTITV-THGSCVTFLDANSLE-LIKE---HKVPAQVHSASLLLNSERP-IFVCGGED  144 (231)
Q Consensus        74 ~~~~~~~~~---~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-~~~~g~~d  144 (231)
                      .+.......   .++.+..+|..+.+++ +.++.+.+||.+... ....   ...+....  +..++|..+ ++++.+..
T Consensus       139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~--t~~F~P~~P~Li~~~~~~  216 (609)
T KOG4227|consen  139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY--TAEFHPETPALILVNSET  216 (609)
T ss_pred             eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce--eeeecCCCceeEEecccc
Confidence            776665543   7889999998887665 567889999987644 2221   22222222  333466655 45667777


Q ss_pred             CeEEEEeCCCcce-eee------ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe-eeeeeccCCcccCC
Q psy6442         145 LKMYKFDYSTGAE-IES------FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT-YGLWKCIEGGLNNS  213 (231)
Q Consensus       145 ~~i~~~d~~~~~~-~~~------~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~  213 (231)
                      +-+-+||.+..+. +..      ++.......++.|+|.|..|.+--.-..--+||+.+.+- +-...--.+++||+
T Consensus       217 ~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~  293 (609)
T KOG4227|consen  217 GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNI  293 (609)
T ss_pred             CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceee
Confidence            7788999764321 111      222223446789999999999888777778889877443 22333223455554

>KOG1524|consensus

Probab=98.86  E-value=5.3e-08  Score=81.93  Aligned_cols=142  Identities=15%  Similarity=0.226  Sum_probs=95.8

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      ...++.++.||.+.|-+-. ++..+.+. +...+.+-.|+|||.-++ ++.|+.|++|....+-.........++.+..|
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence            3568888899998887643 33333332 445677778999998654 56789999998654321111122335555555


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                        .|+..-++.+. .+.+.+=.+.....+-..++|.+-|.++.|+|..++++||++|-..+|||..-.
T Consensus       154 --~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~  218 (737)
T KOG1524|consen  154 --APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA  218 (737)
T ss_pred             --CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc
Confidence              55544444432 334444445544555667899999999999999999999999999999997443

>KOG1963|consensus

Probab=98.84  E-value=8.3e-07  Score=78.43  Aligned_cols=138  Identities=15%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             EEEEeCCCCEEEEeCCCCCce-----EEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCC--cc--eEEe-eeccce
Q psy6442          55 LISCAEDKTVRLWDVSASAEV-----QKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANS--LE--LIKE-HKVPAQ  123 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~--~~--~~~~-~~~~~~  123 (231)
                      +...--+..+.+|...++...     ...++.-..++++++|.++.++++. +|.|.+|.--.  ..  ..+. +-...+
T Consensus       174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~  253 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE  253 (792)
T ss_pred             EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence            333344556778887764411     1112334478899999999988764 68899886322  11  1122 233446


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      +....+  +++|..+++|+..+.+-+|.+.+++ .+-++.-.++|..+.+|||+.+.+....|+.|.+-...
T Consensus       254 V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  254 VNSLSF--SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             cceeEE--ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            666555  7889999999999999999998877 33445667899999999999999999999999998863

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.4e-06  Score=73.63  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=96.4

Q ss_pred             CceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCC--EEEEeCCCCCceEEEEeC
Q psy6442           6 KPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT--VRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         6 ~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t--i~iwd~~~~~~~~~~~~~   81 (231)
                      ++++++..+|+.  +..+.+   ......|+|||+.+              +++.+.++.  |.++|+.+++........
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~L--------------a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~  305 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKL--------------ALVLSKDGQPEIYVVDIATKALTRITRHR  305 (448)
T ss_pred             EEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEE--------------EEEEeCCCCeEEEEEECCCCCeEECccCC
Confidence            355566655553  222222   23356677776543              234555665  667788777644333333


Q ss_pred             CcceeEEEccCCCEEEEEcC----CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVTHG----SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~  154 (231)
                      ......+|+||++.++...+    ..+..+|..+.+..+..........  ..++|++..++..+.+   ..|+++|+.+
T Consensus       306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~--~~~SpDG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG--GSITPDGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC--eeECCCCCEEEEEEecCCceEEEEEECCC
Confidence            44567899999997765432    3566677765544332111111111  2347888877765442   3577788877


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeC-CCc--EEEEeCCCCCeeeee
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSE-DGT--LRLWQTNVGKTYGLW  203 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~-d~~--v~iwd~~~~~~~~~~  203 (231)
                      +... .+.... ......|+|||++|+..+. ++.  +.+++. +|+.....
T Consensus       384 g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l  432 (448)
T PRK04792        384 GAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL  432 (448)
T ss_pred             CCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            6543 222221 1224479999997766554 333  666776 44444333

>KOG2315|consensus

Probab=98.82  E-value=6.1e-07  Score=75.85  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=89.0

Q ss_pred             CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEE
Q psy6442          63 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIF  138 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  138 (231)
                      ++.+.++...++.-.+.-.++|.++.|+|+++.+.+.++   .++.++|.+-. ++  +..+. +-+.  +.++|.+.++
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v--~df~egpRN~--~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PV--FDFPEGPRNT--AFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-Ee--EeCCCCCccc--eEECCCCCEE
Confidence            566777664444444444578999999999998776544   58888887543 22  22222 2233  3348888887


Q ss_pred             EEecC---CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC------CCcEEEEeCCC
Q psy6442         139 VCGGE---DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE------DGTLRLWQTNV  196 (231)
Q Consensus       139 ~~g~~---d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~------d~~v~iwd~~~  196 (231)
                      +.++-   .|.|-+||..+.+++..+..-..  +-..|+|||++|+++..      |+.++||++.-
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            76554   58999999999888888875443  34689999999988863      78899999843

>KOG1538|consensus

Probab=98.81  E-value=5.2e-08  Score=83.95  Aligned_cols=164  Identities=16%  Similarity=0.250  Sum_probs=109.7

Q ss_pred             cEEEEEECCCCceeEecccccc--------------------------ccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442          27 CVWGVDINKDASKAASGAADFQ--------------------------AKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~--------------------------~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      .|+.++|.|||..+.-++.+..                          .++|++++||+.|+.|.+|...-.. +....+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeecc
Confidence            8999999999977665544311                          1377788888888888888654322 223345


Q ss_pred             CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc---e
Q psy6442          81 GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA---E  157 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~---~  157 (231)
                      ...+-++.|.|-...++...-+...+|......+ ..++....+  .+.++..+|+.++.|..+|+|-+-+- +++   .
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V-~K~kss~R~--~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~  168 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV-SKHKSSSRI--ICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVK  168 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhH-HhhhhheeE--EEeeecCCCcEEEEeccCceEEeecC-CCCcceE
Confidence            6677777777766655444334455565433222 222222333  44445899999999999999887653 333   2


Q ss_pred             eeeccCCCCCeeEEEEcCCC-----CEEEEeeCCCcEEEEeCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDG-----ELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~-----~~laS~s~d~~v~iwd~~  195 (231)
                      +...-|...+|++++|+|..     ..++......++.++.+.
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence            44445678999999999963     488888999999999873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.81  E-value=7.8e-06  Score=67.64  Aligned_cols=199  Identities=15%  Similarity=0.132  Sum_probs=120.1

Q ss_pred             cCCCceeeeccCCCeEeeeec----c---cccEEEEEECCCCceeEecccc------------------ccccCCCEEEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEG----H---KGCVWGVDINKDASKAASGAAD------------------FQAKNNTRLIS   57 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~g----H---~~~V~~~~~~~~~~~~~s~~~d------------------~~~~~~~~l~s   57 (231)
                      .++.|.++|..+++.++.+.-    +   ...-..+.++|||+.+....++                  ..+.++..++.
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~  154 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP  154 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            467899999999999988763    1   1123467889999887754432                  01123344444


Q ss_pred             Ee--------CCCCEEEEeCCC-CC-ceEEEEe--C------CcceeEEEcc-CCCEEEEEcCCeEEEEECCCcc-----
Q psy6442          58 CA--------EDKTVRLWDVSA-SA-EVQKLEF--G------AVPNSLEISR-DGTTITVTHGSCVTFLDANSLE-----  113 (231)
Q Consensus        58 ~s--------~D~ti~iwd~~~-~~-~~~~~~~--~------~~~~~v~~~~-~~~~~~~~~~~~i~~~d~~~~~-----  113 (231)
                      .+        .||+.....+.+ ++ .......  .      ..+   .+.+ ++..++++..+.+...|.....     
T Consensus       155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~  231 (352)
T TIGR02658       155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP  231 (352)
T ss_pred             ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence            42        333333222211 11 1111111  1      111   2344 8888888888999999954322     


Q ss_pred             eEEeeec--------cceeEEEEEEecCCCCEEEE-ec---------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442         114 LIKEHKV--------PAQVHSASLLLNSERPIFVC-GG---------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       114 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-g~---------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp  175 (231)
                      .+.....        |.....  +..++++..+.. ..         ...+|+++|..+++.+..+.- ...+..++++|
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~  308 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ  308 (352)
T ss_pred             eeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC
Confidence            2222111        111222  334666666554 21         124799999999998887752 34789999999


Q ss_pred             CCC-EEEEee-CCCcEEEEeCCCCCeeeeeeccC
Q psy6442         176 DGE-LYASGS-EDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       176 d~~-~laS~s-~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                      |++ +|.... .++.|.+.|+.+++.......+.
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg  342 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG  342 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence            998 776565 68889999999999887764433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=6.2e-06  Score=70.35  Aligned_cols=191  Identities=14%  Similarity=0.093  Sum_probs=113.4

Q ss_pred             ceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC---CCCEEEEeCCCCCceEEEEeCCc
Q psy6442           7 PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE---DKTVRLWDVSASAEVQKLEFGAV   83 (231)
Q Consensus         7 ~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~---D~ti~iwd~~~~~~~~~~~~~~~   83 (231)
                      +.+-|. +|...+.+... +.+..-.|+|+|+.+              ++..+.   +..|.++|+.+++.......+..
T Consensus       171 l~~~d~-dg~~~~~~~~~-~~~~~p~wSpDG~~~--------------i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~  234 (419)
T PRK04043        171 IVLADY-TLTYQKVIVKG-GLNIFPKWANKEQTA--------------FYYTSYGERKPTLYKYNLYTGKKEKIASSQGM  234 (419)
T ss_pred             EEEECC-CCCceeEEccC-CCeEeEEECCCCCcE--------------EEEEEccCCCCEEEEEECCCCcEEEEecCCCc
Confidence            334342 35544444433 367788899987631              222222   34688889988776554444555


Q ss_pred             ceeEEEccCCCEEEEEc----CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCcc
Q psy6442          84 PNSLEISRDGTTITVTH----GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTGA  156 (231)
Q Consensus        84 ~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~~  156 (231)
                      .....|+||++.++...    ...+.+++.......+....+....  ...++|+++.++..+..   ..|++.|+.+++
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~--~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDV--NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccC--ccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            55678999998766532    2467778876665433322222111  22348888876665432   368888987776


Q ss_pred             eeeec-cCCCCCeeEEEEcCCCCEEEEeeCC---------CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         157 EIESF-KGHFGPIHCVKFSPDGELYASGSED---------GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       157 ~~~~~-~~h~~~V~~v~~spd~~~laS~s~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ..+.. .+..    ...|||||+.|+-.+..         ..|.+.|+.++....+ +.  +......+|.++|++
T Consensus       313 ~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-T~--~~~~~~p~~SPDG~~  381 (419)
T PRK04043        313 VEQVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-TA--NGVNQFPRFSSDGGS  381 (419)
T ss_pred             eEeCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-CC--CCCcCCeEECCCCCE
Confidence            53332 2221    24899999988776643         2577889888875433 32  223445677778775

>KOG4547|consensus

Probab=98.79  E-value=7.8e-07  Score=75.53  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=112.0

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe----CCcceeEEE------c--------------cCCCEEEEE-cCCeEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEI------S--------------RDGTTITVT-HGSCVTF  106 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~----~~~~~~v~~------~--------------~~~~~~~~~-~~~~i~~  106 (231)
                      ..++|....||.+|||+...++....+.-    ...-....|      +              .+...++.+ ..+.+.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            45678888999999999987665443321    111111111      1              122222223 4578888


Q ss_pred             EECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEe
Q psy6442         107 LDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG  183 (231)
Q Consensus       107 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~  183 (231)
                      ++...++....+...   ..+.+..  ...+-.++.+++.|.++-.|+..+...++.+.+-...+.+++++||+.+|++|
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~--~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEIL--DAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeee--cccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            888888777666532   3344333  35666788999999999999999999999998888999999999999999988


Q ss_pred             eCCCcEEEEeCCCCCeeeeeeccCCcc
Q psy6442         184 SEDGTLRLWQTNVGKTYGLWKCIEGGL  210 (231)
Q Consensus       184 s~d~~v~iwd~~~~~~~~~~~~~~~~~  210 (231)
                      +  ++|++||+++++.+..++++....
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHGSPV  187 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCCcce
Confidence            8  689999999999999988766553

>KOG3881|consensus

Probab=98.75  E-value=1.7e-06  Score=70.37  Aligned_cols=160  Identities=19%  Similarity=0.245  Sum_probs=116.4

Q ss_pred             ccCCCEEEEEeCCCCEEEEeCCCCC----ceEEEEeCCcceeEEEccCCCEEEEEcC----CeEEEEECCCcceEEeeec
Q psy6442          49 AKNNTRLISCAEDKTVRLWDVSASA----EVQKLEFGAVPNSLEISRDGTTITVTHG----SCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        49 ~~~~~~l~s~s~D~ti~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~  120 (231)
                      -..+..|++|-.+|.+.+|....+.    .+..+..++.+..+.-++....+++..+    +.+.+||+....++...+.
T Consensus       112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             hhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence            3456789999999999999987443    3445566777888888888777666433    4578899877655544221


Q ss_pred             --------ccee--EEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcE
Q psy6442         121 --------PAQV--HSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTL  189 (231)
Q Consensus       121 --------~~~~--~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v  189 (231)
                              ..++  ..+.|........++++..-+.+++||.+.+ .++.+|.--..+++++...|+++++.+|..-+.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                    1222  2233322223677899999999999999754 4567777677899999999999999999999999


Q ss_pred             EEEeCCCCCeeee-eeccCC
Q psy6442         190 RLWQTNVGKTYGL-WKCIEG  208 (231)
Q Consensus       190 ~iwd~~~~~~~~~-~~~~~~  208 (231)
                      ..||.+.++.... +++..+
T Consensus       272 ~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             heecccCceeeccccCCccC
Confidence            9999999987654 555333

>KOG4532|consensus

Probab=98.74  E-value=3.2e-06  Score=65.85  Aligned_cols=151  Identities=16%  Similarity=0.037  Sum_probs=105.1

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEE-EcCCeEEEEECCCcc--eEEeeeccceeEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITV-THGSCVTFLDANSLE--LIKEHKVPAQVHSAS  128 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~  128 (231)
                      ..+..++.|.|+|+.++..+.....++.+ -..+++.+++|++.+.+ +....+-++.+....  ..+....+..-...+
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            45788999999999998766544444433 23789999999998765 445677777665432  223233333333344


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcce-----eeeccCCCCCeeEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCeee
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAE-----IESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~-----~~~~~~h~~~V~~v~~spd~~--~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ..++.....+|.+.+|+++-+||++....     ..+-+.|.++++.+.|+|-|.  +|.-...-+.+++-|+++++-.+
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            44577788899999999999999976432     223346999999999998653  45555556779999999988765


Q ss_pred             ee
Q psy6442         202 LW  203 (231)
Q Consensus       202 ~~  203 (231)
                      +.
T Consensus       289 ~I  290 (344)
T KOG4532|consen  289 VI  290 (344)
T ss_pred             EE
Confidence            43

>KOG4547|consensus

Probab=98.72  E-value=2.5e-06  Score=72.54  Aligned_cols=192  Identities=17%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             CcCCCceeeeccCCCeEeeeec--c-cccEEEEEEC--CCC--ceeEeccccccccCC-CEEEEEeCCCCEEEEeCCCCC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEG--H-KGCVWGVDIN--KDA--SKAASGAADFQAKNN-TRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~g--H-~~~V~~~~~~--~~~--~~~~s~~~d~~~~~~-~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ..||-+|+|+..++++-..|..  | ++.-.+..|.  .+.  .+-...........+ ..++=|-.-|.|-+|++..++
T Consensus        12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~   91 (541)
T KOG4547|consen   12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGE   91 (541)
T ss_pred             CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCe
Confidence            3689999999998887666542  2 2333334443  110  000000000011122 346666667899999999998


Q ss_pred             ceEEEE---eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          74 EVQKLE---FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        74 ~~~~~~---~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ...++.   +...++.+.++.+-..++. +.+..+..|+......++..+... .+..++  +.|++.++++++  +.|.
T Consensus        92 it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~--is~D~~~l~~as--~~ik  167 (541)
T KOG4547|consen   92 ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC--ISPDGKILLTAS--RQIK  167 (541)
T ss_pred             EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE--EcCCCCEEEecc--ceEE
Confidence            877776   3456777766665555554 345677788888777777766543 233333  478888888875  6788


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCC-----CC-EEEEeeCCCcEEEEeCCCC
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPD-----GE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd-----~~-~laS~s~d~~v~iwd~~~~  197 (231)
                      +||+++.+.+.+|+||.++|++++|..+     |. +|.++..+.-+.+|-+...
T Consensus       168 ~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  168 VLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999999999999999999999999987     44 5566677888899987653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=7.4e-06  Score=70.17  Aligned_cols=118  Identities=10%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             cceeEEEccCCCEEEE-Ec-CC--eEEEEECCC-cceEEeeecc-ceeEEEEEEecCCCCEEEEecCC---CeEEEEeCC
Q psy6442          83 VPNSLEISRDGTTITV-TH-GS--CVTFLDANS-LELIKEHKVP-AQVHSASLLLNSERPIFVCGGED---LKMYKFDYS  153 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~-~~-~~--~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~  153 (231)
                      .....+|+|||+.++. +. ++  .+.+++... ....+..... ....  ...++|+++.++....+   ..|++||+.
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~--~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS--CPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc--ceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            3456799999997654 32 34  344444432 1112222111 1222  23348899887765432   469999998


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEee-C--CCcEEEEeCCCCCeeeee
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGS-E--DGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s-~--d~~v~iwd~~~~~~~~~~  203 (231)
                      +++... +......+....|+|||+.|+..+ .  ...|.++|+..++...+-
T Consensus       360 ~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        360 TGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            876543 332334567889999998776443 2  356888899888765544

>KOG1272|consensus

Probab=98.71  E-value=6.5e-08  Score=80.01  Aligned_cols=178  Identities=16%  Similarity=0.224  Sum_probs=125.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-E
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-E   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~   79 (231)
                      ++..|.+...|..+|++++.+.-..|.+..+.-+|-               +..+-+|...|+|-+|.....+.+..+ .
T Consensus       227 ~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~---------------NaVih~GhsnGtVSlWSP~skePLvKiLc  291 (545)
T KOG1272|consen  227 ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY---------------NAVIHLGHSNGTVSLWSPNSKEPLVKILC  291 (545)
T ss_pred             cccCCceEEEeechhhhhHHHHccCCccchhhcCCc---------------cceEEEcCCCceEEecCCCCcchHHHHHh
Confidence            356788899999999999999888899988888884               556888999999999999988876554 5


Q ss_pred             eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEe-CCCc--
Q psy6442          80 FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD-YSTG--  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d-~~~~--  155 (231)
                      +...+.++++.++|++++.+ .|..+.+||++....+.++..+.+....++  +..+.+  +.+....+.+|- .-.+  
T Consensus       292 H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~--SqkglL--A~~~G~~v~iw~d~~~~s~  367 (545)
T KOG1272|consen  292 HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSL--SQKGLL--ALSYGDHVQIWKDALKGSG  367 (545)
T ss_pred             cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccc--ccccce--eeecCCeeeeehhhhcCCC
Confidence            67899999999999998765 578999999999887777766666555444  555533  334445566663 2221  


Q ss_pred             ceeeeccCC--CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         156 AEIESFKGH--FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       156 ~~~~~~~~h--~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ..-..+..|  .++|.++.|.|-...|..|-..|.-.|-=...|
T Consensus       368 ~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG  411 (545)
T KOG1272|consen  368 HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG  411 (545)
T ss_pred             CCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence            111122234  358999999996555555544444334333333

>KOG1587|consensus

Probab=98.70  E-value=2.9e-06  Score=73.95  Aligned_cols=175  Identities=17%  Similarity=0.192  Sum_probs=111.1

Q ss_pred             CCceeeeccCC-CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE-----
Q psy6442           5 GKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ-----   76 (231)
Q Consensus         5 ~~~~~~~~~~g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~-----   76 (231)
                      +.+.+|+.+.- +.-..|. -...|.++.|+|.              +...++.|..+|+|-+||++.+..  ..     
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~--------------~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~  286 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPF--------------DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL  286 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccC--------------CcceEEeeccCceEEEEEccCCCCCCCcccccc
Confidence            35778887544 2222233 2567888888875              456789999999999999987655  21     


Q ss_pred             EEEeCCcceeEEEccCCC---EEEEEcCCeEEEEECCCcceEEe-----eec--------cceeEEEEEEecCCCCEEEE
Q psy6442          77 KLEFGAVPNSLEISRDGT---TITVTHGSCVTFLDANSLELIKE-----HKV--------PAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~---~~~~~~~~~i~~~d~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~  140 (231)
                      ...+...+..+.|..+..   .+.++.|+.|..|+++.......     ...        ......+.+. ..+-..++.
T Consensus       287 ~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p~~FiV  365 (555)
T KOG1587|consen  287 EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDPNHFIV  365 (555)
T ss_pred             cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCCceEEE
Confidence            122456677777765432   45566799999998765433111     000        1122222221 223445889


Q ss_pred             ecCCCeEEEEeC---CCc-----ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         141 GGEDLKMYKFDY---STG-----AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       141 g~~d~~i~~~d~---~~~-----~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      |.++|.|+.-.-   ...     +.+..+..|.++|+++.++|=+..+...+.|-+||||.-.
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence            999999887322   211     1234566789999999999987644444449999999876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.70  E-value=6.9e-06  Score=68.89  Aligned_cols=144  Identities=14%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEec
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLN  132 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  132 (231)
                      +++-..+++|.+.|..+.+.+..+..... ...+.++||++.+++. .++.+.++|+.+.+.+++.+.......+.+  +
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~--s   86 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV--S   86 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE--c
Confidence            45667789999999999999999987544 4667899999988765 478999999999999998877665554444  8


Q ss_pred             CCCCEEEEec-CCCeEEEEeCCCcceeeeccCC-------CCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCee
Q psy6442         133 SERPIFVCGG-EDLKMYKFDYSTGAEIESFKGH-------FGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       133 ~~~~~~~~g~-~d~~i~~~d~~~~~~~~~~~~h-------~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~~  200 (231)
                      ++++.++.++ ..+.+.++|.++.+.++++...       ...+..+..+|....++ +--+.+.|-+-|....+..
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            8999887665 6789999999998888776432       34577888899887554 4455688888898776543

...

>KOG0280|consensus

Probab=98.69  E-value=3.5e-07  Score=71.75  Aligned_cols=165  Identities=16%  Similarity=0.164  Sum_probs=100.1

Q ss_pred             eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEE--EEeCCcceeEEEccCC-C
Q psy6442          19 GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQK--LEFGAVPNSLEISRDG-T   94 (231)
Q Consensus        19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~--~~~~~~~~~v~~~~~~-~   94 (231)
                      +++++|.-..|...|+..              +...++|||.|+.+..||++. ++++..  ..+...+.++.-+|.. .
T Consensus       159 q~wk~He~E~Wta~f~~~--------------~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~  224 (339)
T KOG0280|consen  159 QTWKVHEFEAWTAKFSDK--------------EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT  224 (339)
T ss_pred             ccccccceeeeeeecccC--------------CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence            378899999998888754              356789999999999999993 333322  2244566777766654 4


Q ss_pred             EEEEE-cCCeEEEEECCCc-ceEEeeeccceeEEEEEEecCCCCEEEEecCCC-eEEEEeCCCcc---eeeeccCCCCCe
Q psy6442          95 TITVT-HGSCVTFLDANSL-ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL-KMYKFDYSTGA---EIESFKGHFGPI  168 (231)
Q Consensus        95 ~~~~~-~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~~~---~~~~~~~h~~~V  168 (231)
                      .++++ .+.+|++||.++. +++........+-.+...+...+.+++++...| .|....-...+   .+...+.|.+-+
T Consensus       225 ~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~  304 (339)
T KOG0280|consen  225 YIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC  304 (339)
T ss_pred             eEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee
Confidence            55554 5789999999854 444444444445444443222333444444333 23322222223   344556677666


Q ss_pred             eEEEEcCCCCEEEEee-CCCcEE-EEeCCCC
Q psy6442         169 HCVKFSPDGELYASGS-EDGTLR-LWQTNVG  197 (231)
Q Consensus       169 ~~v~~spd~~~laS~s-~d~~v~-iwd~~~~  197 (231)
                      ..-.|.....+||||+ .|+.++ +|-..++
T Consensus       305 YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  305 YGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eccccccccceeeeeeccccceeeeeeeccC
Confidence            6666644456899987 566655 6654443

>KOG3914|consensus

Probab=98.69  E-value=6.7e-07  Score=72.78  Aligned_cols=146  Identities=21%  Similarity=0.279  Sum_probs=92.3

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCc----eEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEE---CCCcceEEeeeccce
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAE----VQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLD---ANSLELIKEHKVPAQ  123 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d---~~~~~~~~~~~~~~~  123 (231)
                      +..||.+-.++...+.++.....    .........++.+.+..+...+.+. ..+....+|   ............-.-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSm  153 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSM  153 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhh
Confidence            44566666666655666554332    2222344556666666666554443 223333333   222111111111111


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      +.  .+.++++.++++++..|..||+-.....-.++.| -||+.-|..++.-++. .|+|++.|++|++||+.+|+..
T Consensus       154 l~--dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  154 LL--DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hh--eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence            22  2345889999999999999999877666667776 4899999999998875 4899999999999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.69  E-value=1.7e-05  Score=74.88  Aligned_cols=149  Identities=17%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEE---------------eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLE---------------FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE  113 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~  113 (231)
                      ++..+++.+.++.|++||..++.......               .-..+..++++|++..++++.  ++.|+.||..+..
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            34556777778899999987664321100               012467899999998776653  4699999987544


Q ss_pred             eEEeee-----------cc---------ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec------------
Q psy6442         114 LIKEHK-----------VP---------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF------------  161 (231)
Q Consensus       114 ~~~~~~-----------~~---------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~------------  161 (231)
                      ......           ..         .-.....+..++++.++++-..+.+|++||..++......            
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~  853 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA  853 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence            211100           00         0001123334778888888888999999998776543211            


Q ss_pred             -cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         162 -KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       162 -~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                       .+.-.....|+++|+|+++++-+.++.|++||+.+++.
T Consensus       854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence             11223577899999999999999999999999998875

>KOG2394|consensus

Probab=98.68  E-value=1.4e-07  Score=79.32  Aligned_cols=117  Identities=21%  Similarity=0.322  Sum_probs=94.0

Q ss_pred             CCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          81 GAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      ...++..+|+||++.++ ++.++.+++++-.+.+.+...+. =....+++|  +|+++++++|++|--+.+|.+..++.+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW--SPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW--SPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE--cCCccEEEecCCcceEEEEEeccceEE
Confidence            35788999999999875 58899999999887776544332 123444444  999999999999999999999999999


Q ss_pred             eeccCCCCCeeEEEEcC-------------------------------C----C-------------CEEEEeeCCCcEE
Q psy6442         159 ESFKGHFGPIHCVKFSP-------------------------------D----G-------------ELYASGSEDGTLR  190 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~sp-------------------------------d----~-------------~~laS~s~d~~v~  190 (231)
                      ..-+||+.-|..|+|.|                               +    +             ..|.|.+.|-.+-
T Consensus       368 ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlc  447 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLC  447 (636)
T ss_pred             EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEE
Confidence            99999999999999983                               0    1             2688899999999


Q ss_pred             EEeCCCCCe
Q psy6442         191 LWQTNVGKT  199 (231)
Q Consensus       191 iwd~~~~~~  199 (231)
                      |||+.....
T Consensus       448 LWDlteD~L  456 (636)
T KOG2394|consen  448 LWDLTEDVL  456 (636)
T ss_pred             EEecchhhc
Confidence            999865543

>KOG1064|consensus

Probab=98.65  E-value=1.8e-07  Score=88.20  Aligned_cols=149  Identities=10%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSA  127 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~  127 (231)
                      ....+|++.||.|++|.-..+..+.....  ...+..+.++.+|..+.+. .++.+.+|....+-.+ ....+. .....
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~-s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT-SWQCHNKALSDF 2298 (2439)
T ss_pred             CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCccee-ccccCCccccce
Confidence            45688999999999999888877655543  2456777888888876554 5789999998733221 111111 11111


Q ss_pred             EEEecCCCCEEEEe---cCCCeEEEEeCCCc---ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         128 SLLLNSERPIFVCG---GEDLKMYKFDYSTG---AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       128 ~~~~~~~~~~~~~g---~~d~~i~~~d~~~~---~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      .+.    +..++++   ++++.+-+||.-..   .+++  ..|.+.++++++-|..++|.||+++|.|.|||++..+...
T Consensus      2299 ~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2299 RFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             eee----ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence            221    1233433   34578999997432   3445  6799999999999999999999999999999999998887


Q ss_pred             eeeccC
Q psy6442         202 LWKCIE  207 (231)
Q Consensus       202 ~~~~~~  207 (231)
                      .|+...
T Consensus      2373 ~~~~~~ 2378 (2439)
T KOG1064|consen 2373 TFQALD 2378 (2439)
T ss_pred             Hhhhhh
Confidence            777654

>KOG0882|consensus

Probab=98.65  E-value=1.4e-07  Score=77.90  Aligned_cols=188  Identities=16%  Similarity=0.196  Sum_probs=129.7

Q ss_pred             CCcCCCceeeeccC--C-CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC-CCCEEEEeCCCCCceE
Q psy6442           1 MCVDGKPMLRQGDT--G-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE-DKTVRLWDVSASAEVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~--g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~ti~iwd~~~~~~~~   76 (231)
                      ++.||-++.|....  | +.+..+..|-+.|.++..+-++               ..+.|.+. |..+|++|+.......
T Consensus        26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg---------------~L~~Sv~d~Dhs~KvfDvEn~Dmin   90 (558)
T KOG0882|consen   26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG---------------WLFRSVEDPDHSVKVFDVENFDMIN   90 (558)
T ss_pred             eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc---------------eeEeeccCcccceeEEEeeccchhh
Confidence            47899999999643  2 4677788999999988877654               44677666 9999999998877665


Q ss_pred             EEEeCCcceeEEEccCCC----EEEEE--cCCeEEEEECCCcceEE--eeecc-ceeEEEEEEecCCCCEEEEecCCCeE
Q psy6442          77 KLEFGAVPNSLEISRDGT----TITVT--HGSCVTFLDANSLELIK--EHKVP-AQVHSASLLLNSERPIFVCGGEDLKM  147 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~----~~~~~--~~~~i~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i  147 (231)
                      -+.+...|..+.|.....    .++++  .++.+.++|.....+..  ..+.+ .++.....  .+.+..+++....|.|
T Consensus        91 miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y--~qa~Ds~vSiD~~gmV  168 (558)
T KOG0882|consen   91 MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY--NQAGDSAVSIDISGMV  168 (558)
T ss_pred             hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe--eccccceeecccccee
Confidence            555555555555543322    34443  45688888866543221  11122 23443333  5666678888888999


Q ss_pred             EEEeCCC------cc---------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         148 YKFDYST------GA---------EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       148 ~~~d~~~------~~---------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..|....      ..         .+..+...+....++.|+|++..+++-+.|..||++++.+|+.++..++
T Consensus       169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            9997652      11         1223344566788999999999999999999999999999998765543

>KOG1354|consensus

Probab=98.65  E-value=4e-07  Score=72.96  Aligned_cols=116  Identities=21%  Similarity=0.265  Sum_probs=72.7

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcce------EEeeecc--ce-eEEEEEEecC-CCCEEEEecCCCeEEEEe
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLEL------IKEHKVP--AQ-VHSASLLLNS-ERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~--~~-~~~~~~~~~~-~~~~~~~g~~d~~i~~~d  151 (231)
                      ..++++++..|+.+++.+.+=.|.+|.+.-...      +++.+..  .. +++..+  +| ...+++..+..|+|++.|
T Consensus       165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEF--hp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEF--HPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhcc--CHhHccEEEEecCCCcEEEee
Confidence            356788888888887777777888887653221      1111111  01 122222  33 344577778899999999


Q ss_pred             CCCcceee----e------------ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC-CCCCee
Q psy6442         152 YSTGAEIE----S------------FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT-NVGKTY  200 (231)
Q Consensus       152 ~~~~~~~~----~------------~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~-~~~~~~  200 (231)
                      ++...+..    .            |.+--..|.++.|+++|++++|-.. -+|+|||+ ...++.
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv  307 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV  307 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence            98543211    0            1122346789999999999987665 67999998 344443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.63  E-value=6.2e-05  Score=63.16  Aligned_cols=172  Identities=14%  Similarity=0.185  Sum_probs=116.4

Q ss_pred             cccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcC-CeEEEEECCCcceEEeeeccce
Q psy6442          46 DFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THG-SCVTFLDANSLELIKEHKVPAQ  123 (231)
Q Consensus        46 d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~-~~i~~~d~~~~~~~~~~~~~~~  123 (231)
                      |+.+.++.+++..|. |.+.|.+.-.+..+ .+.....+.-..+..+..-+++ ..+ ..+.++|....+..+..+.-..
T Consensus       326 dfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~  403 (668)
T COG4946         326 DFAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN  403 (668)
T ss_pred             hhccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccc
Confidence            566778899888885 55666665444332 1222333444444444443333 334 4889999877665444333233


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC----CcEEEEeCCCCCe
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED----GTLRLWQTNVGKT  199 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d----~~v~iwd~~~~~~  199 (231)
                      +.++  ..++++..++.+.....+++.|+.++.....=+...+-|+...|||+++++|-+-.+    ..|+|+|...+|.
T Consensus       404 I~av--~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         404 IEAV--KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             eEEE--EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            4443  348999999999999999999999887544334567889999999999999988665    4689999999998


Q ss_pred             eeeeeccCCcccCCCCCCcccccc
Q psy6442         200 YGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      +..=+  +.+.-.+=+|+++|..+
T Consensus       482 y~vTT--~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         482 YDVTT--PTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             EEecC--CcccccCcccCCCCcEE
Confidence            87655  34455556777777643

>KOG0280|consensus

Probab=98.60  E-value=1.3e-05  Score=63.13  Aligned_cols=146  Identities=23%  Similarity=0.292  Sum_probs=91.3

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE------eCC-cceeEEEccCCCEEEEEcC-CeEEEEECCCcceEE--eeec-cc
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE------FGA-VPNSLEISRDGTTITVTHG-SCVTFLDANSLELIK--EHKV-PA  122 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~------~~~-~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~--~~~~-~~  122 (231)
                      .|+-+-.+|.|.++..........+.      ... ...++-|++.+..++++.. +.+...+........  ..+. +.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            46667778888888764332222211      111 2456778888888877653 455544443333222  1111 11


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCC-Ccceeee-ccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCC-CCC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYS-TGAEIES-FKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTN-VGK  198 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~-~~~~~~~-~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~-~~~  198 (231)
                      +.-...+. ..+..++.+|++|+.+..||++ .++.+.+ -+-|...|.++.-+|. +.++++|+.|.+|++||.+ -+|
T Consensus       167 E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  167 EAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeeeeecc-cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            22222221 2233567899999999999998 3333433 4568889999998884 7899999999999999998 555


Q ss_pred             ee
Q psy6442         199 TY  200 (231)
Q Consensus       199 ~~  200 (231)
                      +.
T Consensus       246 Pl  247 (339)
T KOG0280|consen  246 PL  247 (339)
T ss_pred             cc
Confidence            54

>KOG4497|consensus

Probab=98.59  E-value=1.5e-06  Score=69.46  Aligned_cols=190  Identities=17%  Similarity=0.147  Sum_probs=119.9

Q ss_pred             EEEECCCCceeEeccccc--------------------------cccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-C
Q psy6442          30 GVDINKDASKAASGAADF--------------------------QAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-A   82 (231)
Q Consensus        30 ~~~~~~~~~~~~s~~~d~--------------------------~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~   82 (231)
                      ...|+|+|+++++.+...                          .....-.|..+..|+.|.+|++...+-..++..+ .
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            356788888888875431                          1113345778888999999999877666666654 4


Q ss_pred             cceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCe---EEEEeCCCcce
Q psy6442          83 VPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLK---MYKFDYSTGAE  157 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~---i~~~d~~~~~~  157 (231)
                      .+...+|+|||+.+...  .+-.|.+|.+.+.+.....-....+..++  +++++++.+..+.--+   +.+.-.+.-.+
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~--f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA--FHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE--ECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            56789999999876543  35688999998876544322222333333  4889998777653211   11111111123


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeC--CCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccccce
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSE--DGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (231)
                      +..+.-.+-..+.+.|+|||..||.=..  +-.|.+|.-..|-..-.|.    -++-++++.+.+.|+.|
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ws----P~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWS----PCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEec----cccceEEeeccchhhhh
Confidence            4555555666788999999998875432  3444566666666666665    23456777776665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=3.2e-05  Score=60.59  Aligned_cols=181  Identities=17%  Similarity=0.159  Sum_probs=113.3

Q ss_pred             cCCCceeeeccCCCeEeeeec---ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEG---HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~g---H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      .+|+|..+|+.+|+.+-...-   ..+.+..                 ...+++.+++++.++.+..||..+++.+....
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~   63 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-----------------AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD   63 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEET-----------------EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccce-----------------EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence            478899999988987766532   1222210                 11235678888899999999999999888877


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEee-eccc---ee-EEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEH-KVPA---QV-HSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      ....+.......++..++...++.+..+|..+++.+... ....   .. .....  ...+..++.+..++.++.+|.++
T Consensus        64 ~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen   64 LPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP--AVDGDRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             CSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE--EEETTEEEEEETCSEEEEEETTT
T ss_pred             ccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCc--eEecCEEEEEeccCcEEEEecCC
Confidence            755433333334444545556778999998888887763 3221   11 11111  11255677777799999999999


Q ss_pred             cceeeeccCCCCC----------eeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCeeeeeecc
Q psy6442         155 GAEIESFKGHFGP----------IHCVKFSPDGELYASGSEDGT-LRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       155 ~~~~~~~~~h~~~----------V~~v~~spd~~~laS~s~d~~-v~iwd~~~~~~~~~~~~~  206 (231)
                      |+.+..+.....+          +..-....++ .+..++.++. +.+ |+.+++..  |+..
T Consensus       142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~--w~~~  200 (238)
T PF13360_consen  142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKL--WSKP  200 (238)
T ss_dssp             TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEE--EEEC
T ss_pred             CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEE--EEec
Confidence            9988776554322          1222222344 5555666664 566 99999844  7543

...

>KOG1334|consensus

Probab=98.58  E-value=2.7e-07  Score=76.87  Aligned_cols=201  Identities=19%  Similarity=0.287  Sum_probs=133.4

Q ss_pred             CCcCCCceeeeccCCCeEeee-ecccccEEEEEECCC--CceeEecccccccc---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD--ASKAASGAADFQAK---------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l-~gH~~~V~~~~~~~~--~~~~~s~~~d~~~~---------------------------   50 (231)
                      +|+|-+|.+|+=..++....| .||...|+.-.|-|.  .+.+++.+.|..++                           
T Consensus       160 gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla  239 (559)
T KOG1334|consen  160 GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA  239 (559)
T ss_pred             cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee
Confidence            578999999998888765555 689999999988774  35666666665443                           


Q ss_pred             ----CCCEEEEEeCCCCEEEEeCCCCCceEEEEe---C-C---cceeEEEccCCC-EEEEE-cCCeEEEEECCCcceE--
Q psy6442          51 ----NNTRLISCAEDKTVRLWDVSASAEVQKLEF---G-A---VPNSLEISRDGT-TITVT-HGSCVTFLDANSLELI--  115 (231)
Q Consensus        51 ----~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~-~---~~~~v~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~--  115 (231)
                          ....+.||+.|+.++-.|++......++..   . .   ..++++..|... .++++ .+...+++|.+.....  
T Consensus       240 v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~  319 (559)
T KOG1334|consen  240 VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN  319 (559)
T ss_pred             ecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence                345688999999999999987765444432   1 1   346777777665 34443 3567788886643221  


Q ss_pred             ----Eee-----eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCC--Cc----------ceeee-ccCCCCC--eeEE
Q psy6442         116 ----KEH-----KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYS--TG----------AEIES-FKGHFGP--IHCV  171 (231)
Q Consensus       116 ----~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~--~~----------~~~~~-~~~h~~~--V~~v  171 (231)
                          ..+     ....++...++.++.++.-+++...|--|++|.-.  .|          ...+. ++||...  |-.+
T Consensus       320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV  399 (559)
T KOG1334|consen  320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV  399 (559)
T ss_pred             cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence                111     11223333344446566666666778888888432  23          23334 7899754  4444


Q ss_pred             E-EcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         172 K-FSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       172 ~-~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      - |-|...+++|||+=|.|.||+-.+++.+.
T Consensus       400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eeccCccceEEecCccceEEEEecchhHHHH
Confidence            4 66788999999999999999998887653

>KOG1523|consensus

Probab=98.54  E-value=7.9e-06  Score=65.01  Aligned_cols=154  Identities=14%  Similarity=0.205  Sum_probs=105.8

Q ss_pred             ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc---eEEE-EeCCcceeEEEccCCCE-EEE
Q psy6442          24 HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE---VQKL-EFGAVPNSLEISRDGTT-ITV   98 (231)
Q Consensus        24 H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~---~~~~-~~~~~~~~v~~~~~~~~-~~~   98 (231)
                      -..+|++.+|++|.+               .++.+-....|.||.......   ..++ ++...++.+.|+|..+. +.+
T Consensus         9 ~~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc   73 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC   73 (361)
T ss_pred             ccCceeeeeecCCCc---------------eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc
Confidence            356899999999854               467777777888988766552   2333 24678899999998854 455


Q ss_pred             EcCCeEEEEECCCcceEEe----eeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce--e--eeccCCCCCeeE
Q psy6442          99 THGSCVTFLDANSLELIKE----HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--I--ESFKGHFGPIHC  170 (231)
Q Consensus        99 ~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~--~~~~~h~~~V~~  170 (231)
                      +.+..-.+|........+.    .+......+  +.+.|.+..++.|+.-..|-+|-.+....  +  +.-+-+...|++
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~--V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATC--VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceee--EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence            6777788887743332221    122222333  33488888999998887777665432211  1  122346678999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         171 VKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       171 v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ++|+|++-+|++||.|+..|||..
T Consensus       152 ldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  152 LDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             eeccCCcceecccccCcceeEEEE
Confidence            999999999999999999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.51  E-value=6.6e-05  Score=62.58  Aligned_cols=140  Identities=19%  Similarity=0.304  Sum_probs=85.2

Q ss_pred             CCCEEEEeCCCCC--ce--EEEE--eCCcceeEEEccCCCEEEEEc--CCeEEEEECC--Ccc--eEEeeec-c----ce
Q psy6442          61 DKTVRLWDVSASA--EV--QKLE--FGAVPNSLEISRDGTTITVTH--GSCVTFLDAN--SLE--LIKEHKV-P----AQ  123 (231)
Q Consensus        61 D~ti~iwd~~~~~--~~--~~~~--~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~--~~~--~~~~~~~-~----~~  123 (231)
                      ...|.+|++....  ..  ..+.  .+..+..+.|+|+++.+++..  .+.+..++..  ...  .+..... +    ..
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            3468888887654  22  2222  245789999999999988764  5688887765  322  2222211 1    11


Q ss_pred             eEEEEEEecCCCCEEEEec-CCCeEEEEeC--CCcc--eeeeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeC--C
Q psy6442         124 VHSASLLLNSERPIFVCGG-EDLKMYKFDY--STGA--EIESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLWQT--N  195 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~-~d~~i~~~d~--~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~--~  195 (231)
                      .....+..+|+++++.... ....|.+|++  .++.  .+..+.......+.++++|+|++|+.+. .++.|.+|++  .
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence            1334455689999877654 4457888887  3343  2333433334589999999999887665 6778999965  5


Q ss_pred             CCCee
Q psy6442         196 VGKTY  200 (231)
Q Consensus       196 ~~~~~  200 (231)
                      +|+..
T Consensus       325 tG~l~  329 (345)
T PF10282_consen  325 TGKLT  329 (345)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            66643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=3.4e-05  Score=65.87  Aligned_cols=174  Identities=15%  Similarity=0.136  Sum_probs=98.5

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC--CCCEEEEeCCCCCceEEEEeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~--D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .++++++..+|+... +....+.+...+|+|||+.++              ++.+.  +..|.++|+..++..+......
T Consensus       213 ~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la--------------~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~  277 (419)
T PRK04043        213 PTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLL--------------LTMAPKGQPDIYLYDTNTKTLTQITNYPG  277 (419)
T ss_pred             CEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEE--------------EEEccCCCcEEEEEECCCCcEEEcccCCC
Confidence            356666666665433 222445555667888876543              23333  3457777887776433222232


Q ss_pred             cceeEEEccCCCEEEEEcC----CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---------CeEEE
Q psy6442          83 VPNSLEISRDGTTITVTHG----SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---------LKMYK  149 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---------~~i~~  149 (231)
                      ....-.|+|||+.++...+    ..|..+|....+..+...... .. .  .++|++..++.....         ..|++
T Consensus       278 ~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~--~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v  353 (419)
T PRK04043        278 IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NN-S--SVSTYKNYIVYSSRETNNEFGKNTFNLYL  353 (419)
T ss_pred             ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cC-c--eECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence            2345679999987665432    267777877655533322111 11 2  348888877655432         36888


Q ss_pred             EeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC-Cc--EEEEeCCCCCe
Q psy6442         150 FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED-GT--LRLWQTNVGKT  199 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d-~~--v~iwd~~~~~~  199 (231)
                      .|+.++.. ..+... .......|+|||++++-.+.+ +.  +.+.++.-.+.
T Consensus       354 ~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        354 ISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             EECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence            89877754 333322 223357899999977665532 22  45666644433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.48  E-value=8e-05  Score=62.73  Aligned_cols=145  Identities=12%  Similarity=0.070  Sum_probs=91.6

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-----------ce-eEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAV-----------PN-SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-----------~~-~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  120 (231)
                      ..++.+..++.+..+|..+++.+........           +. +..+ .++..++.+.++.+..+|..+.+.+.....
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            4677788889999999988876544332110           00 0111 133333445678899999888776655442


Q ss_pred             cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ....   ..  ...+..+..++.++.++.+|..+++.+...+.... ...+...  .+..+..++.+|.|.++|..+|+.
T Consensus       270 ~~~~---~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       270 SSYQ---GP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             CCcc---Cc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            2111   11  11234566677899999999999988765532111 1122122  356888899999999999999998


Q ss_pred             eeeeec
Q psy6442         200 YGLWKC  205 (231)
Q Consensus       200 ~~~~~~  205 (231)
                      ...++.
T Consensus       343 ~~~~~~  348 (377)
T TIGR03300       343 VARLKT  348 (377)
T ss_pred             EEEEEc
Confidence            877764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064|consensus

Probab=98.46  E-value=6.8e-07  Score=84.55  Aligned_cols=170  Identities=15%  Similarity=0.236  Sum_probs=112.6

Q ss_pred             CCcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++.||.|+.|.=..++.+.+++ ....+|..+.|+.+|++               ...+..||-+-+|.... +....-+
T Consensus      2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk---------------~~i~d~dg~l~l~q~~p-k~~~s~q 2289 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK---------------FGIVDGDGDLSLWQASP-KPYTSWQ 2289 (2439)
T ss_pred             cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc---------------eeeeccCCceeecccCC-cceeccc
Confidence            5789999999988888888775 23478888888887654               45566789999998862 2222222


Q ss_pred             -eCCcceeEEEccCCCEEEE---EcCCeEEEEECCCcce-EEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy6442          80 -FGAVPNSLEISRDGTTITV---THGSCVTFLDANSLEL-IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~~~---~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~  153 (231)
                       +.....+..|-... .+..   +.++.+.+||..-... .-.++.+ ....  ++..-|..+++++|+.+|.+.+||.+
T Consensus      2290 chnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT--~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGAT--VLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             cCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceeeeecCCCce--EEEEcCcceEEEecCCcCcEEEeehH
Confidence             22233344443311 1111   1345788898542211 1112222 2233  34457899999999999999999999


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ..+++++++.         +. ...+|++++..|.|+||++.....
T Consensus      2367 qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2367 QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence            9888888764         33 567999999999999999876543

>KOG0974|consensus

Probab=98.46  E-value=6.5e-06  Score=74.22  Aligned_cols=140  Identities=13%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc--eeEE---EccCCCEEEEE-cCCeEEEEECCCcceEE-eeeccce
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLE---ISRDGTTITVT-HGSCVTFLDANSLELIK-EHKVPAQ  123 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~--~~v~---~~~~~~~~~~~-~~~~i~~~d~~~~~~~~-~~~~~~~  123 (231)
                      .+++++....+..+-|||...+..+..+......  .++.   .+++.-++..+ --+.+.+|+....+... .......
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            5677888888999999999877666666554322  1222   22322233222 24678888876322211 1112223


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +  ..+..+-++..+++.++|..+++|++.+.+.+. +.-+|.+.|+.+.|.|+  .++|+++|-+.++|+.
T Consensus       178 i--F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  178 I--FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             e--EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            3  334447789999999999999999999887665 66789999999999999  9999999999999954

>KOG1409|consensus

Probab=98.46  E-value=4.3e-06  Score=67.11  Aligned_cols=169  Identities=15%  Similarity=0.205  Sum_probs=99.5

Q ss_pred             cCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEc
Q psy6442          13 DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEIS   90 (231)
Q Consensus        13 ~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~   90 (231)
                      ..-.++-++++|.+.|.++.|.+.               +..|.++..|..+.+||+.-++.+....  +...+..++..
T Consensus       185 ~~~~~i~~~~~h~~~~~~l~Wd~~---------------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  185 NGCQLITTFNGHTGEVTCLKWDPG---------------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             cCCceEEEEcCcccceEEEEEcCC---------------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            344678889999999999999885               5568999999999999997665543322  23444455444


Q ss_pred             cCCCEEE-EEcCCeEEEEECCCcceEEe----------eecc----------cee------------EEEEEEecCCCCE
Q psy6442          91 RDGTTIT-VTHGSCVTFLDANSLELIKE----------HKVP----------AQV------------HSASLLLNSERPI  137 (231)
Q Consensus        91 ~~~~~~~-~~~~~~i~~~d~~~~~~~~~----------~~~~----------~~~------------~~~~~~~~~~~~~  137 (231)
                      +-.+.++ +..++.|.+|+.+.......          ...+          .+.            ...+.....+...
T Consensus       250 ~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~  329 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSS  329 (404)
T ss_pred             hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccc
Confidence            4444433 44578888888654322111          0000          000            0001111111112


Q ss_pred             EEEecCCCeEEEEeCC-------CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         138 FVCGGEDLKMYKFDYS-------TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       138 ~~~g~~d~~i~~~d~~-------~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ...-+....+++.|.-       +..++..+..-.-.|+.+.+..+-.+|+|++.|+.|+|||++.
T Consensus       330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            2222333445554431       1223444432233588888988888999999999999999854

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.40  E-value=0.00032  Score=58.45  Aligned_cols=200  Identities=17%  Similarity=0.237  Sum_probs=115.0

Q ss_pred             ccccEEEEEECCC-CceeEecc-----cc---c-cccCCCEEEEEeC-CCCEEEEeCCCC-CceEE---EEe--------
Q psy6442          24 HKGCVWGVDINKD-ASKAASGA-----AD---F-QAKNNTRLISCAE-DKTVRLWDVSAS-AEVQK---LEF--------   80 (231)
Q Consensus        24 H~~~V~~~~~~~~-~~~~~s~~-----~d---~-~~~~~~~l~s~s~-D~ti~iwd~~~~-~~~~~---~~~--------   80 (231)
                      ..+.|.++++.++ +.+-....     ..   . ...+++.|+++.. +++|.++++... .....   +.+        
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~  139 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD  139 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence            5677888887776 43322111     11   0 1135677777764 899999999874 33222   211        


Q ss_pred             ---CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc--eE--EeeeccceeEEEEEEecCCCCEEEEe-cCCCeEEEE
Q psy6442          81 ---GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE--LI--KEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKF  150 (231)
Q Consensus        81 ---~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~  150 (231)
                         ...+-.+.++|+++.+++..  .+.|.+++.....  ..  .....+......-+.++++++++... ..+.+|..+
T Consensus       140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF  219 (345)
T ss_dssp             TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence               13456899999999988864  3588888876543  22  22333322222223448888876554 446678887


Q ss_pred             eCC--Ccce--ee---ecc-CCC--CCeeEEEEcCCCCEE-EEeeCCCcEEEEeC--CCCCe--eeeeeccCCcccCCCC
Q psy6442         151 DYS--TGAE--IE---SFK-GHF--GPIHCVKFSPDGELY-ASGSEDGTLRLWQT--NVGKT--YGLWKCIEGGLNNSLG  215 (231)
Q Consensus       151 d~~--~~~~--~~---~~~-~h~--~~V~~v~~spd~~~l-aS~s~d~~v~iwd~--~~~~~--~~~~~~~~~~~~~~~~  215 (231)
                      ++.  .+..  ++   ++. +..  .....++++|||++| +|....++|.+|++  .+|+.  .+.+. ..+..+-.+.
T Consensus       220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~  298 (345)
T PF10282_consen  220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFA  298 (345)
T ss_dssp             EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEE
T ss_pred             eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEE
Confidence            776  3321  22   221 111  257889999999865 55567888999998  33443  22333 2566677788


Q ss_pred             CCccccccc
Q psy6442         216 LDSSGHLNN  224 (231)
Q Consensus       216 ~~~~~~~~~  224 (231)
                      ++++|+++=
T Consensus       299 ~s~~g~~l~  307 (345)
T PF10282_consen  299 FSPDGRYLY  307 (345)
T ss_dssp             E-TTSSEEE
T ss_pred             EeCCCCEEE
Confidence            888877653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.39  E-value=0.00014  Score=56.88  Aligned_cols=145  Identities=19%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEE-EeCCc----ceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecccee
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKL-EFGAV----PNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPAQV  124 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~  124 (231)
                      .+..++.+..|+.+..+|..+++.+... ....+    .........+..+++.. ++.+..+|..+++.+.......+.
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            4566777778899999999999988774 32211    11222333355555554 789999999998887766543211


Q ss_pred             --E--------EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         125 --H--------SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       125 --~--------~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                        .        ..... ..++ .+...+.++.+..+|..+++.+....  ...+.. ...+++..|..++.++.|..||.
T Consensus       155 ~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  155 GSSPISSFSDINGSPV-ISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             SS--EEEETTEEEEEE-CCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred             CCcceeeecccccceE-EECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence              0        11222 2234 45555556654444999988664333  222222 14466777777779999999999


Q ss_pred             CCCCee
Q psy6442         195 NVGKTY  200 (231)
Q Consensus       195 ~~~~~~  200 (231)
                      ++|+..
T Consensus       230 ~tG~~~  235 (238)
T PF13360_consen  230 KTGKVV  235 (238)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            999854

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.38  E-value=6.4e-05  Score=63.30  Aligned_cols=148  Identities=18%  Similarity=0.136  Sum_probs=88.3

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEE----
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHS----  126 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----  126 (231)
                      ++..++.++.|+.+..+|..+++.+........+.+.....++..++...++.+..+|..+++.+..++...+...    
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            4667888889999999999999887666554433221112234444444577899999988887766554322110    


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-----CC--CeeEEEEcC--CCCEEEEeeCCCcEEEEeCCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-----FG--PIHCVKFSP--DGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-----~~--~V~~v~~sp--d~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ...... + ..++.+..++.++.+|.++|+.+.+..-.     ..  ....+.-+|  .+..+..++.++.+..||..+|
T Consensus       184 ~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       184 ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            000111 2 35667778889999999888776543210     00  000011112  2445666777888888888888


Q ss_pred             Cee
Q psy6442         198 KTY  200 (231)
Q Consensus       198 ~~~  200 (231)
                      +..
T Consensus       262 ~~~  264 (377)
T TIGR03300       262 RVL  264 (377)
T ss_pred             cEE
Confidence            744

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714|consensus

Probab=98.36  E-value=6.7e-06  Score=63.76  Aligned_cols=144  Identities=19%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCce-EEEEeC-CcceeEEEccCCCEEEEEcC------CeEEEEECCCcceEEeeec-c
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEV-QKLEFG-AVPNSLEISRDGTTITVTHG------SCVTFLDANSLELIKEHKV-P  121 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~-~  121 (231)
                      .++.++++..||.+-+.+.+.-..+ ..++.. ....+.++...+..+....-      +....|+.+....+..... .
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            4678999999999999987641111 111100 11122233333333332211      1222333333222111111 1


Q ss_pred             ceeEEEEEEecCC-CCEEEEecCCCeEEEEeCCCccee-eeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q psy6442         122 AQVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEI-ESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       122 ~~~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~-~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~  196 (231)
                      ..+.+.+.  +|. ..++++|++|+.+-+||.+....+ ..+..|+++++.+-|+|. +..|.++++||.+--||..+
T Consensus       180 ~~v~~l~~--hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCS--HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhC--CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            12333332  444 345778899999999999877544 557899999999999994 67999999999999999864

>KOG4190|consensus

Probab=98.32  E-value=2.8e-06  Score=72.27  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             CCcCCCceeeecc-CC------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGD-TG------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~-~g------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ++.|.+|+||+.+ .|      -+--+|..|+.+|..+.|-.+-               ..+  +|.|+.|.+||.-.++
T Consensus       753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l---------------r~i--~ScD~giHlWDPFigr  815 (1034)
T KOG4190|consen  753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL---------------RSI--ASCDGGIHLWDPFIGR  815 (1034)
T ss_pred             ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc---------------cee--eeccCcceeecccccc
Confidence            4789999999973 22      2445678999999999876542               233  4569999999988777


Q ss_pred             ceEEEEeC---CcceeEEEccC--CCEEEEE--cCCeEEEEECCCcceEEeee---ccce-eEEEEEEecCCCCEEEEec
Q psy6442          74 EVQKLEFG---AVPNSLEISRD--GTTITVT--HGSCVTFLDANSLELIKEHK---VPAQ-VHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        74 ~~~~~~~~---~~~~~v~~~~~--~~~~~~~--~~~~i~~~d~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~  142 (231)
                      .+..+...   .....+..-++  ...+++.  ..++++++|.+..+..-+.+   .+.+ ...-++...+.|..++.+-
T Consensus       816 ~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  816 LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            66544321   22223333333  3344433  45789999988765543332   2322 1112233367788889998


Q ss_pred             CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEE-EeCCCCCe
Q psy6442         143 EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL-WQTNVGKT  199 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~i-wd~~~~~~  199 (231)
                      ..|+|-+.|.++|..+....-.......++ .|..+.|++...|.++.+ |..-.|..
T Consensus       896 SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  896 SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence            999999999999987765433322233333 366678888888999998 98776653

>KOG1409|consensus

Probab=98.31  E-value=2.3e-05  Score=63.01  Aligned_cols=70  Identities=17%  Similarity=0.378  Sum_probs=60.2

Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      .+.+...++.+|..|..+.+||+.-.+ ....+.+|...|..+.+-+.-+.|.|++.||-|.+||....+.
T Consensus       204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            347788889999999999999996543 4567889999999999999999999999999999999877654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=0.001  Score=54.03  Aligned_cols=206  Identities=13%  Similarity=0.143  Sum_probs=121.8

Q ss_pred             CCceeeecc--CCCe-EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeC---CCCEEEEeCC--CCCceE
Q psy6442           5 GKPMLRQGD--TGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE---DKTVRLWDVS--ASAEVQ   76 (231)
Q Consensus         5 ~~~~~~~~~--~g~~-i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~---D~ti~iwd~~--~~~~~~   76 (231)
                      ..+++|+.+  +|++ +-.+-.+.+...-+.|+|+.+.               |+++..   ++.|--|.+.  +|+...
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~---------------LY~v~~~~~~ggvaay~iD~~~G~Lt~   80 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRH---------------LYVVNEPGEEGGVAAYRIDPDDGRLTF   80 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCCE---------------EEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence            445666654  3332 1123345666667777776554               444433   3555555544  344332


Q ss_pred             EEE---eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceE----Eeeeccc--------eeEEEEEEecCCCCEEE
Q psy6442          77 KLE---FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELI----KEHKVPA--------QVHSASLLLNSERPIFV  139 (231)
Q Consensus        77 ~~~---~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~----~~~~~~~--------~~~~~~~~~~~~~~~~~  139 (231)
                      .-+   .+..+..++++++++.++++.  .+.+.++-+.....+    .......        ..++-.....|++++++
T Consensus        81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~  160 (346)
T COG2706          81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV  160 (346)
T ss_pred             eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence            221   234568999999999888763  468888876542221    1111111        11122233488998877


Q ss_pred             EecCC-CeEEEEeCCCcceeeecc---CCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCC-Cee---eee-----ec
Q psy6442         140 CGGED-LKMYKFDYSTGAEIESFK---GHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVG-KTY---GLW-----KC  205 (231)
Q Consensus       140 ~g~~d-~~i~~~d~~~~~~~~~~~---~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~-~~~---~~~-----~~  205 (231)
                      +.+-. -+|.+|++..|.+...-+   .-.+-.+.|.|+|++++. +.+.-+++|.+|..... ..+   |..     ..
T Consensus       161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         161 VPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             EeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence            76543 468888888776432211   233456889999999864 44567999999998773 222   222     23


Q ss_pred             cCCcccCCCCCCccccccce
Q psy6442         206 IEGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~  225 (231)
                      ..+.+++.|-+.++|.++-+
T Consensus       241 ~g~~~~aaIhis~dGrFLYa  260 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYA  260 (346)
T ss_pred             CCCCceeEEEECCCCCEEEE
Confidence            34677888888999888754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.26  E-value=1.1e-05  Score=64.29  Aligned_cols=113  Identities=21%  Similarity=0.316  Sum_probs=70.0

Q ss_pred             cceeEEEccCCCEEEEEcCCeEEEEECCCcce------EEeeecc--ce-eEEEEEEecCC-CCEEEEecCCCeEEEEeC
Q psy6442          83 VPNSLEISRDGTTITVTHGSCVTFLDANSLEL------IKEHKVP--AQ-VHSASLLLNSE-RPIFVCGGEDLKMYKFDY  152 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~--~~-~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~  152 (231)
                      .++++++..|..+++.+.+=.|.+|.+.-...      ++++...  .. +.+..+  +|. ...+-..+..|.|++.|+
T Consensus       174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeF--hp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEF--HPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             EeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhccc--CHhHcceEEEecCCCcEEehhh
Confidence            45677888888877766677888887653221      1111111  00 111112  332 234455677899999998


Q ss_pred             CCccee----------------eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         153 STGAEI----------------ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       153 ~~~~~~----------------~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +...+.                .-+++-...|.++.|+|+|+++++-+. -+|+|||++..+
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence            754321                012334456889999999999998776 569999986554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.25  E-value=0.0012  Score=53.43  Aligned_cols=184  Identities=19%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             ceeeeccCCCeEeeeecccccEEE--EEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEEEe-CC
Q psy6442           7 PMLRQGDTGDWIGTFEGHKGCVWG--VDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKLEF-GA   82 (231)
Q Consensus         7 ~~~~~~~~g~~i~~l~gH~~~V~~--~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~~-~~   82 (231)
                      ..++|..+|+.++.+..-.+.-+-  -.|++||++|.+...|+.          ...|.|-|||... -+.+..+.. +-
T Consensus        30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~----------~g~G~IgVyd~~~~~~ri~E~~s~GI   99 (305)
T PF07433_consen   30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE----------TGRGVIGVYDAARGYRRIGEFPSHGI   99 (305)
T ss_pred             EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC----------CCcEEEEEEECcCCcEEEeEecCCCc
Confidence            457788888877766543333221  468888888777665443          2357788999982 233333332 23


Q ss_pred             cceeEEEccCCCEEEEEcCC-------------------eEEEEECCCcceEEeeeccceeEEEE---EEecCCCCEEEE
Q psy6442          83 VPNSLEISRDGTTITVTHGS-------------------CVTFLDANSLELIKEHKVPAQVHSAS---LLLNSERPIFVC  140 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  140 (231)
                      -+-.+.+.||+..++++.++                   .+.+.|..+.+.+.....+...+..+   +...+++..+..
T Consensus       100 GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a  179 (305)
T PF07433_consen  100 GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA  179 (305)
T ss_pred             ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE
Confidence            46678899999887765433                   23345556666666555432211111   223555554433


Q ss_pred             ecCCC-------eEEEEeCCCcceeeec-------cCCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeee
Q psy6442         141 GGEDL-------KMYKFDYSTGAEIESF-------KGHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       141 g~~d~-------~i~~~d~~~~~~~~~~-------~~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~  202 (231)
                      .-.++       -+.+++.  ++.+..+       ..-...+-+|++++++.+++..| .-+.+.+||..+++....
T Consensus       180 ~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  180 MQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             EecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            32221       1222222  2211111       12335688999999998775554 678889999999987644

>KOG2066|consensus

Probab=98.24  E-value=0.00014  Score=64.53  Aligned_cols=170  Identities=11%  Similarity=0.178  Sum_probs=109.1

Q ss_pred             CeEeeeecccccEEEEEECCCC--ceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccC-
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDA--SKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD-   92 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~--~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~-   92 (231)
                      +.+. |.-|.|.|.-.++....  +...+++    ...|.+++|||.||+|.|-.+.+.+......++.++.+++++|+ 
T Consensus        50 ~~~~-~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~  124 (846)
T KOG2066|consen   50 KFFA-LGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDF  124 (846)
T ss_pred             ceee-eccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccch
Confidence            3443 67899998877665432  2222222    34688999999999999999999888888889999999999998 


Q ss_pred             ----CCEEEEEcCCeEEEEECCC---cceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCC
Q psy6442          93 ----GTTITVTHGSCVTFLDANS---LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF  165 (231)
Q Consensus        93 ----~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~  165 (231)
                          .+.++++....+.++..+.   ...+..+....++.+++|    .+.++|-++.+| +++||..+++.+..++-..
T Consensus       125 ~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W----~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  125 SRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW----RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             hhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe----cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence                1223333322255554332   222223344556666666    566666666544 6889988877665543222


Q ss_pred             CC------eeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         166 GP------IHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       166 ~~------V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ..      ...+.|.++.++++  +...+|+|..++.+
T Consensus       200 ~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~~  235 (846)
T KOG2066|consen  200 QSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKKR  235 (846)
T ss_pred             CCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEecc
Confidence            22      34677888766543  45567998888743

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.24  E-value=0.0013  Score=51.94  Aligned_cols=41  Identities=32%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..-|..|..||||.+||+...+|.|.||++=+-+....|+-
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            45689999999999999999999999999988888888853

>KOG2041|consensus

Probab=98.21  E-value=2.5e-05  Score=68.50  Aligned_cols=184  Identities=17%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             CCcCCCceeeeccCC---------------CeEeeeecccccEEEEEECCCCceeEecccccccc---------------
Q psy6442           1 MCVDGKPMLRQGDTG---------------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g---------------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------   50 (231)
                      +|.||.+++....|.               .--++|.||.+.|.-+.|+...+++.++..+..+.               
T Consensus        32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN  111 (1189)
T KOG2041|consen   32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN  111 (1189)
T ss_pred             ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh
Confidence            467887777765432               11245789999999999999988888876653221               


Q ss_pred             --------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEE-cCCeEEEEECCCc--
Q psy6442          51 --------------NNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT-HGSCVTFLDANSL--  112 (231)
Q Consensus        51 --------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~--  112 (231)
                                    +|++++..-.||.|.+=.+...+. .-.++ +.....+.|++|...+... ..+.++++|-...  
T Consensus       112 nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~  190 (1189)
T KOG2041|consen  112 NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE  190 (1189)
T ss_pred             CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHH
Confidence                          556666666666666544433221 11111 2334578889887765433 3567777764321  


Q ss_pred             -----ce-EEe---e-eccceeEEEEEE------ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC
Q psy6442         113 -----EL-IKE---H-KVPAQVHSASLL------LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD  176 (231)
Q Consensus       113 -----~~-~~~---~-~~~~~~~~~~~~------~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd  176 (231)
                           .+ +..   + ..+.++-.+.+.      ..|+.+.++.+...|++.+..-......-.+. -.-.|..+.|+|+
T Consensus       191 ~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~  269 (1189)
T KOG2041|consen  191 RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHN  269 (1189)
T ss_pred             HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCC
Confidence                 01 000   0 011122222221      24688889999999988776443322222221 1245788999999


Q ss_pred             CCEEEEeeCC
Q psy6442         177 GELYASGSED  186 (231)
Q Consensus       177 ~~~laS~s~d  186 (231)
                      |..||.|+.|
T Consensus       270 G~vLAvcG~~  279 (1189)
T KOG2041|consen  270 GAVLAVCGND  279 (1189)
T ss_pred             CcEEEEccCc
Confidence            9999999854

>KOG1275|consensus

Probab=98.20  E-value=8.5e-06  Score=72.88  Aligned_cols=142  Identities=17%  Similarity=0.230  Sum_probs=94.2

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      ..-|+|.|.|+++.+-++++..|++.|..++..  |++|++.+...      +...=..|.-|++||++.-+.+.-+.+.
T Consensus       194 ~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~------R~~~l~~D~FvkVYDLRmmral~PI~~~  265 (1118)
T KOG1275|consen  194 DTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSM------RRYNLAMDPFVKVYDLRMMRALSPIQFP  265 (1118)
T ss_pred             cccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeeccc------ccccccccchhhhhhhhhhhccCCcccc
Confidence            457999999999999999999999999877654  55554443211      1111224778999999887776666665


Q ss_pred             CcceeEEEccCCC--EEEEEcCCeEEEEECCCcc-e--EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          82 AVPNSLEISRDGT--TITVTHGSCVTFLDANSLE-L--IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        82 ~~~~~v~~~~~~~--~~~~~~~~~i~~~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                      ..+.-+.+.|.-.  .++++..+...+.|..+.. +  -..+-.+.......+..++.+..++.|..++.|.+|-
T Consensus       266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            5555566666533  3445667777888733211 1  1111112222234566688999999999999999996

>smart00320 WD40 WD40 repeats

Probab=98.18  E-value=5.6e-06  Score=44.26  Aligned_cols=38  Identities=50%  Similarity=1.017  Sum_probs=33.6

Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ..+..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566678899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.17  E-value=0.0015  Score=62.05  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=89.5

Q ss_pred             CCEEEEEeC-CCCEEEEeCCCCCceEEEEe------------------CCcceeEEEccCCCEEEEE--cCCeEEEEECC
Q psy6442          52 NTRLISCAE-DKTVRLWDVSASAEVQKLEF------------------GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  110 (231)
Q Consensus        52 ~~~l~s~s~-D~ti~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~  110 (231)
                      +..|+.+.. .+.|+++|..++.. .++.-                  -..+..++++|++..++++  .+..|.+||..
T Consensus       635 gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~  713 (1057)
T PLN02919        635 KNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS  713 (1057)
T ss_pred             CCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC
Confidence            444555544 46788888766542 22210                  1245789999966665554  35688888876


Q ss_pred             CcceEEeee--------cc-----ceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCcceeee-------------ccC
Q psy6442         111 SLELIKEHK--------VP-----AQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIES-------------FKG  163 (231)
Q Consensus       111 ~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~-------------~~~  163 (231)
                      +........        ..     .-.....+.+++++. +.++-..+.+|++||+.++.....             +-.
T Consensus       714 ~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        714 DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            543321100        00     000111233467776 556667778999999876542110             000


Q ss_pred             --------CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         164 --------HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       164 --------h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                              .-.....++++|+|+++++-+.++.|++||..++...
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence                    0113468999999999999999999999999887654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.16  E-value=7.5e-05  Score=64.14  Aligned_cols=82  Identities=18%  Similarity=0.321  Sum_probs=60.8

Q ss_pred             EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +.....+.+....+...+|+...++.|..|+.|.+||...+...  +..+.-.++.++|+|+|.+++.|+..|.+.+||.
T Consensus       251 vsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  251 VSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             EEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            33333343333344455899999999999999999998665332  2234456788999999999999999999999998


Q ss_pred             CCCC
Q psy6442         195 NVGK  198 (231)
Q Consensus       195 ~~~~  198 (231)
                      ....
T Consensus       329 ALsp  332 (545)
T PF11768_consen  329 ALSP  332 (545)
T ss_pred             ecCc
Confidence            5443

>KOG3914|consensus

Probab=98.11  E-value=4.8e-05  Score=62.22  Aligned_cols=103  Identities=12%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             EEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc--eeEEEEEEecC
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA--QVHSASLLLNS  133 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~  133 (231)
                      .++....+.+|....+.+...+-+-..+..|+++||++.++.++ +..|++-.......+..+-...  -+..+++   .
T Consensus       127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl---~  203 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL---T  203 (390)
T ss_pred             ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee---c
Confidence            44555666677766666666666778899999999999887764 6677775443333333332211  1222222   3


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceeeecc
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIESFK  162 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~  162 (231)
                      ++..+++++.|+++++||..+++.++++.
T Consensus       204 ~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  204 DNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCceeeecCCCCcEEEEecccCCcccccc
Confidence            45558999999999999999999887654

>KOG4532|consensus

Probab=98.09  E-value=0.00033  Score=54.88  Aligned_cols=162  Identities=10%  Similarity=0.063  Sum_probs=97.5

Q ss_pred             CCCCceeEecccccccc----CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc-----CCCEEEEEcCCeE
Q psy6442          34 NKDASKAASGAADFQAK----NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-----DGTTITVTHGSCV  104 (231)
Q Consensus        34 ~~~~~~~~s~~~d~~~~----~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~i  104 (231)
                      +|.+.....-+.+|.+.    ....|+.+|.-|..++|...+.+....+. ....+.+.+..     ....++++.+-++
T Consensus        62 N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~  140 (344)
T KOG4532|consen   62 NPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTG  140 (344)
T ss_pred             CchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcce
Confidence            34444444455566543    56789999999999999998765443322 12222222111     1123344555556


Q ss_pred             EEEECCCcceE-EeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-ccee-eeccC-CCCCeeEEEEcCCCCEE
Q psy6442         105 TFLDANSLELI-KEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST-GAEI-ESFKG-HFGPIHCVKFSPDGELY  180 (231)
Q Consensus       105 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-~~~~-~~~~~-h~~~V~~v~~spd~~~l  180 (231)
                      ++++..-.... ..+.......  ....+++++++++.+....|..|.+.. ++.+ .+..+ ....=.+.+|+.....+
T Consensus       141 k~~~~~~~s~~~~~h~~~~~~n--s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~F  218 (344)
T KOG4532|consen  141 KTMVVSGDSNKFAVHNQNLTQN--SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQF  218 (344)
T ss_pred             eEEEEecCcccceeecccccee--eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceE
Confidence            65554322111 1111112223  344588999999999989999988754 3332 22222 23344678899999999


Q ss_pred             EEeeCCCcEEEEeCCCCC
Q psy6442         181 ASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       181 aS~s~d~~v~iwd~~~~~  198 (231)
                      |.+..||++.|||++.-.
T Consensus       219 Av~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             EEEecCCcEEEEEecccc
Confidence            999999999999998654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.06  E-value=0.00073  Score=57.22  Aligned_cols=187  Identities=12%  Similarity=0.160  Sum_probs=113.1

Q ss_pred             CcCCCceeeeccCCCeEee--eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~--l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +.++.+++|....++-+.+  |..-++  ..+.|++.|+++.--..--. ..++...   ...++.|++++...+.-...
T Consensus       199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~-ksnKsyf---gesnLyl~~~~e~~i~V~~~  272 (561)
T COG5354         199 NKPAMVRILSIPKNSVLVTKNLFKVSG--VQLKWQVLGKYLLVLVMTHT-KSNKSYF---GESNLYLLRITERSIPVEKD  272 (561)
T ss_pred             CCCcEEEEEEccCCCeeeeeeeEeecc--cEEEEecCCceEEEEEEEee-eccccee---ccceEEEEeecccccceecc
Confidence            4567788888776665544  332222  46778888776543221111 1111111   12467788887555544445


Q ss_pred             eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEEEEeCC
Q psy6442          80 FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMYKFDYS  153 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~~~d~~  153 (231)
                      ..+++.+.+|.|.+..+.+..   ...+.++|.+..  ++..-.+.+-+.  ..++|..+.++.++-   .+.+.+||..
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT--~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNT--IFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCccccc--ccccCcccEEEEecCCccccceEEeccC
Confidence            578899999999988665432   356777777654  222222222222  234777777777554   4789999987


Q ss_pred             Ccceee-eccCCCCCeeEEEEcCCCCEEEEee------CCCcEEEEeCCCCCee
Q psy6442         154 TGAEIE-SFKGHFGPIHCVKFSPDGELYASGS------EDGTLRLWQTNVGKTY  200 (231)
Q Consensus       154 ~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s------~d~~v~iwd~~~~~~~  200 (231)
                      ...... .+.+-..  .-+.|+||++++.+..      .|..|+|||+...+.+
T Consensus       349 ~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         349 GRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             CceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            655443 5555433  3357999999877664      4889999999766654

>KOG2314|consensus

Probab=98.03  E-value=0.00027  Score=60.41  Aligned_cols=211  Identities=15%  Similarity=0.202  Sum_probs=113.4

Q ss_pred             eeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--CC--c
Q psy6442           8 MLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GA--V   83 (231)
Q Consensus         8 ~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~--~   83 (231)
                      .||.+..-..++.|. |.+ |..++|||..++|.|=+--....+..    -..-..++|||+.+|...+.+..  .+  .
T Consensus       234 ~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~  307 (698)
T KOG2314|consen  234 ALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEED----DNEGQQLIIWDIATGLLKRSFPVIKSPYLK  307 (698)
T ss_pred             eeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcc----cCCCceEEEEEccccchhcceeccCCCccc
Confidence            455544444444433 543 56788898877776643211110000    01225789999999988877765  22  1


Q ss_pred             ceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEE---------------------------------
Q psy6442          84 PNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASL---------------------------------  129 (231)
Q Consensus        84 ~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~---------------------------------  129 (231)
                      -.-..||.|+++++.-..+.|.+++.....++...... ..+...++                                 
T Consensus       308 WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iR  387 (698)
T KOG2314|consen  308 WPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR  387 (698)
T ss_pred             cceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceee
Confidence            23567999999887655677777775543322110000 00000001                                 


Q ss_pred             ------------EecCCCCEEEE----------ecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCCEEEEee--
Q psy6442         130 ------------LLNSERPIFVC----------GGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGS--  184 (231)
Q Consensus       130 ------------~~~~~~~~~~~----------g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~~laS~s--  184 (231)
                                  .+-..|..|..          .+.-..+.++.++... ++... .-+.+|...+|-|.|..++.-+  
T Consensus       388 t~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  388 TKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             eccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEcc
Confidence                        00111111110          0000112222222111 01111 1345678889999998776654  


Q ss_pred             -CCCcEEEEeCC-CCCeeeeeeccCCcccCCCCCCccccccce
Q psy6442         185 -EDGTLRLWQTN-VGKTYGLWKCIEGGLNNSLGLDSSGHLNNV  225 (231)
Q Consensus       185 -~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (231)
                       ...++.+|.++ +.+...+.+..+...||.+.+++-|-+.=|
T Consensus       467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVV  509 (698)
T ss_pred             ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEE
Confidence             35678999988 666666777788899999999997765433

>KOG2695|consensus

Probab=98.03  E-value=3.8e-05  Score=61.90  Aligned_cols=146  Identities=12%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCc-----ceEEeeeccceeEEEEE
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSL-----ELIKEHKVPAQVHSASL  129 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~  129 (231)
                      ++.+.+-.|-+-++.++... .+.....|.++.|...+..++.++ .+.|..+|++..     .+...+-.+..+.++..
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            56677777888888776542 333456788888888888877764 678888887754     22233333333333222


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcce---eeeccCCCCCee--EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAE---IESFKGHFGPIH--CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~---~~~~~~h~~~V~--~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      . ..+++.+.+.+-+++|.+||++-.+.   +.+++||...-.  -+-..|....++++++|--.|||.+..|....+.
T Consensus       307 L-q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  307 L-QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             h-ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            1 23566677778899999999986655   889999954322  2334455668888999999999999999766554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.00  E-value=0.0044  Score=48.94  Aligned_cols=119  Identities=19%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce-E---Eee-ecccee-EEEEEEecCC
Q psy6442          63 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL-I---KEH-KVPAQV-HSASLLLNSE  134 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~-~---~~~-~~~~~~-~~~~~~~~~~  134 (231)
                      .|..++.. ++.......-..++.++++|+++.+++..  .+.|..++...... +   +.+ ..+... ..-.+..+.+
T Consensus       116 ~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  116 SVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             EEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred             ceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence            34445554 33333333345689999999999888754  46777777643221 1   111 222111 1222334788


Q ss_pred             CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEc-CCCC-EEEEe
Q psy6442         135 RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PDGE-LYASG  183 (231)
Q Consensus       135 ~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~s-pd~~-~laS~  183 (231)
                      +.+.++....+.|.+++.. |+.+..+.--...+++++|. |+.. +++|.
T Consensus       195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            8888887788999999986 88777765445589999994 5644 55544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695|consensus

Probab=98.00  E-value=5.4e-05  Score=61.06  Aligned_cols=111  Identities=10%  Similarity=0.133  Sum_probs=81.0

Q ss_pred             CCEEEEEeCCCCEEEEeCCCC-----CceEEEEeCCcceeEEEcc-CCCEEEEE-cCCeEEEEECCCcce---EEeeecc
Q psy6442          52 NTRLISCAEDKTVRLWDVSAS-----AEVQKLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDANSLEL---IKEHKVP  121 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~i~~~d~~~~~~---~~~~~~~  121 (231)
                      +..+.-|...|.|...|++.+     .+...+.++..++++..-. +++.+.++ .+++|.+||.+..++   +..+..+
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence            455777788899999999864     4566677888899988776 66666665 478999999887666   5555443


Q ss_pred             ceeEE-EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc
Q psy6442         122 AQVHS-ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK  162 (231)
Q Consensus       122 ~~~~~-~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~  162 (231)
                      ..... .-+..++....++++++|...++|.+..+.++.+++
T Consensus       344 vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  344 VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            21111 112336677778889999999999999998887765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.0018  Score=55.42  Aligned_cols=169  Identities=15%  Similarity=0.128  Sum_probs=104.4

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC--CCEEEEeCCCCCceEEEEeCCcceeEEEccC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED--KTVRLWDVSASAEVQKLEFGAVPNSLEISRD   92 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D--~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~   92 (231)
                      |.....+..-...+..-.|+|+++.++..             +-...  ..+.++|+..++....+.+...-..-+|+||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~-------------~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD  248 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYV-------------SFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD  248 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEE-------------EEecCCCceEEEEeccCCccceeeccCCccCCccCCCC
Confidence            66666666555667777788887665432             22222  3588899998887777776666666789999


Q ss_pred             CCEEEEEc--CC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC-C--eEEEEeCCCcceeeeccCCC
Q psy6442          93 GTTITVTH--GS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED-L--KMYKFDYSTGAEIESFKGHF  165 (231)
Q Consensus        93 ~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~--~i~~~d~~~~~~~~~~~~h~  165 (231)
                      |+.++.+.  ++  .|.++|+......+.........  .-.++|+|+.++..+.. +  .|++.+.+.+.. ..+.-..
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~--~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~  325 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT--SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG  325 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc--CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence            99877643  23  56778887766443222222111  23448899988776543 3  477777765543 2222122


Q ss_pred             CCeeEEEEcCCCCEEEEeeCC-Cc--EEEEeCCCCCe
Q psy6442         166 GPIHCVKFSPDGELYASGSED-GT--LRLWQTNVGKT  199 (231)
Q Consensus       166 ~~V~~v~~spd~~~laS~s~d-~~--v~iwd~~~~~~  199 (231)
                      ..-..-.+||||.+++..+.. |.  |-+.+..++..
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            222256799999998888753 33  66666666654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.008  Score=48.97  Aligned_cols=149  Identities=12%  Similarity=0.184  Sum_probs=92.2

Q ss_pred             CCEEEEEeCC-CCEEEEeCCCCCceEEE----EeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCc----ceEEeee-
Q psy6442          52 NTRLISCAED-KTVRLWDVSASAEVQKL----EFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSL----ELIKEHK-  119 (231)
Q Consensus        52 ~~~l~s~s~D-~ti~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~----~~~~~~~-  119 (231)
                      +++|+++.-. ..|.+|++.+++.....    +-+.-+..+.|+|+++..++-.  +++|.+|.....    +.++.+. 
T Consensus       156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t  235 (346)
T COG2706         156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT  235 (346)
T ss_pred             CCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence            3345544321 34888999877654332    2345789999999999887653  578888776542    2233221 


Q ss_pred             ----ccceeEEEEEEecCCCCEEEEecCCC-eEEEEeC--CCcce--eeeccCCCCCeeEEEEcCCCCEEEEee-CCCcE
Q psy6442         120 ----VPAQVHSASLLLNSERPIFVCGGEDL-KMYKFDY--STGAE--IESFKGHFGPIHCVKFSPDGELYASGS-EDGTL  189 (231)
Q Consensus       120 ----~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~--~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v  189 (231)
                          .........+..++++++|....... .|.+|.+  .++.+  +....-+....+...|+|.+++|+.+. ++.+|
T Consensus       236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i  315 (346)
T COG2706         236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI  315 (346)
T ss_pred             CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence                12334455666799999988765432 4666654  33432  222233444578899999999887776 45668


Q ss_pred             EEEeC--CCCCee
Q psy6442         190 RLWQT--NVGKTY  200 (231)
Q Consensus       190 ~iwd~--~~~~~~  200 (231)
                      .+|..  .+|+.-
T Consensus       316 ~vf~~d~~TG~L~  328 (346)
T COG2706         316 TVFERDKETGRLT  328 (346)
T ss_pred             EEEEEcCCCceEE
Confidence            99965  455543

>KOG2314|consensus

Probab=97.90  E-value=0.0011  Score=56.85  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             EEEeCCcceeEEEccCCCEEEEEcC----CeEEEEECCC-cceEEeeeccceeEEEEEEecCCCCEEEEe---cCCCeEE
Q psy6442          77 KLEFGAVPNSLEISRDGTTITVTHG----SCVTFLDANS-LELIKEHKVPAQVHSASLLLNSERPIFVCG---GEDLKMY  148 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~  148 (231)
                      .+++...+...+|.|.|..+++..+    .++.+|-... .........-.+..+..+.++|.|++++.+   +..+.+.
T Consensus       441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceE
Confidence            3344566778889999987665332    4666776542 111111111112333445568999987765   4567888


Q ss_pred             EEeCCCcceeee-ccCCCCCeeEEEEcCCCCEEEEeeC------CCcEEEEeCC
Q psy6442         149 KFDYSTGAEIES-FKGHFGPIHCVKFSPDGELYASGSE------DGTLRLWQTN  195 (231)
Q Consensus       149 ~~d~~~~~~~~~-~~~h~~~V~~v~~spd~~~laS~s~------d~~v~iwd~~  195 (231)
                      .+|+.......+ ...|. .-+.+.|.|.|+++++++.      |.--+||+++
T Consensus       521 F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  521 FYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            898864222111 11243 3467899999999999874      5556777764

>smart00320 WD40 WD40 repeats

Probab=97.89  E-value=4.7e-05  Score=40.42  Aligned_cols=39  Identities=38%  Similarity=0.726  Sum_probs=33.5

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD   68 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd   68 (231)
                      ++.+..+..|...|.++.|++.+               ..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG---------------KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC---------------CEEEEecCCCeEEEcC
Confidence            56778899999999999999863               4588999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.88  E-value=0.0035  Score=52.98  Aligned_cols=125  Identities=11%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             CCEEEEEeCCC-CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDK-TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~-ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      +..++.+-.|| .+-|+|...++..+...--..+..+..+++|+.++++.+ ..+.++|+.+......-+... .....+
T Consensus       371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~-~lItdf  449 (668)
T COG4946         371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY-GLITDF  449 (668)
T ss_pred             CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc-ceeEEE
Confidence            44678888888 899999998876555444567899999999998888766 477788888766543322222 122345


Q ss_pred             EecCCCCEEEEecCC----CeEEEEeCCCcceeee--ccCCCCCeeEEEEcCCCCEE
Q psy6442         130 LLNSERPIFVCGGED----LKMYKFDYSTGAEIES--FKGHFGPIHCVKFSPDGELY  180 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d----~~i~~~d~~~~~~~~~--~~~h~~~V~~v~~spd~~~l  180 (231)
                      .++|+++.+|.+=.+    ..|+++|+..++....  -.+|.   .+=+|.||+++|
T Consensus       450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryL  503 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYL  503 (668)
T ss_pred             EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEE
Confidence            568999998876544    5799999987765432  22332   334788899854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.87  E-value=0.0043  Score=52.75  Aligned_cols=195  Identities=16%  Similarity=0.149  Sum_probs=121.3

Q ss_pred             CCCceeeeccCCCeEeeeeccccc--EE-EEEECCCCceeEeccc--------------------------cccc--c-C
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGC--VW-GVDINKDASKAASGAA--------------------------DFQA--K-N   51 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~--V~-~~~~~~~~~~~~s~~~--------------------------d~~~--~-~   51 (231)
                      ++++.+||..+|.++.++.+-..+  .| -+.|+.+.++.+--..                          +|.+  . +
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n  186 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN  186 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence            457999999999999999987777  66 5677776665542211                          0111  1 2


Q ss_pred             CCEEEE-----EeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEE---c---------CCeEEEEECCCcc
Q psy6442          52 NTRLIS-----CAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT---H---------GSCVTFLDANSLE  113 (231)
Q Consensus        52 ~~~l~s-----~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~---~---------~~~i~~~d~~~~~  113 (231)
                      ...|+.     .+.+.+++||.+..++.+.+..+ ...-..+.|.+.+..+++.   +         .+.+.++++....
T Consensus       187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence            233332     35677888888887766655443 3344567788888876542   1         1345556654332


Q ss_pred             eEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC---CCcEE
Q psy6442         114 LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE---DGTLR  190 (231)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~---d~~v~  190 (231)
                      ..-......+++..+|.+..++--+++|-.+..+-.+|++.. ....+  -..+=+.+.|||.+++++.++-   .|.|-
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~  343 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIE  343 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceE
Confidence            222223345677777744444434456667788889998765 33333  2334566789999999888774   56799


Q ss_pred             EEeCCCCCeee
Q psy6442         191 LWQTNVGKTYG  201 (231)
Q Consensus       191 iwd~~~~~~~~  201 (231)
                      |||........
T Consensus       344 i~~~~~rf~~~  354 (561)
T COG5354         344 IFDPAGRFKVA  354 (561)
T ss_pred             EeccCCceEEE
Confidence            99987665543

>KOG2315|consensus

Probab=97.77  E-value=0.005  Score=52.81  Aligned_cols=197  Identities=15%  Similarity=0.173  Sum_probs=112.5

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCc--eeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS--KAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--   80 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~--~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--   80 (231)
                      +.|.+++...-+-+.. +-|...|..+.++|.+.  .++.    +      ..-+.|.=..||||..........+..  
T Consensus       146 nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAv----y------vPe~kGaPa~vri~~~~~~~~~~~~a~ks  214 (566)
T KOG2315|consen  146 NEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAV----Y------VPEKKGAPASVRIYKYPEEGQHQPVANKS  214 (566)
T ss_pred             ceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEE----E------ccCCCCCCcEEEEeccccccccchhhhcc
Confidence            4566676654333222 34567777888887632  1111    0      011334556799998763322211111  


Q ss_pred             --CCcceeEEEccCCCEEEE--E-----------cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE--EEecC
Q psy6442          81 --GAVPNSLEISRDGTTITV--T-----------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF--VCGGE  143 (231)
Q Consensus        81 --~~~~~~v~~~~~~~~~~~--~-----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~  143 (231)
                        ...--.+.|.+-+.-+++  +           ....++++++....+.-...-..+++...|  ++.++.+  +.|-.
T Consensus       215 FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W--~~s~~EF~VvyGfM  292 (566)
T KOG2315|consen  215 FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW--SPSGREFAVVYGFM  292 (566)
T ss_pred             ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE--CCCCCEEEEEEecc
Confidence              112234456665553322  1           113567777663333333333457887777  5665543  34445


Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE---DGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                      -.++-+||++ +..+..+  -.++-+++-|+|.|++++-|+-   -|.+-|||+.+.|.+...++   ..+....|.+||
T Consensus       293 PAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdG  366 (566)
T KOG2315|consen  293 PAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDG  366 (566)
T ss_pred             cceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCC
Confidence            5678889874 4555555  3467788999999999988874   57899999999887755553   333444555555

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.70  E-value=0.0082  Score=53.12  Aligned_cols=135  Identities=17%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             CCCEEEEEeCCCCEEEEeCCC-----CCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce---------
Q psy6442          51 NNTRLISCAEDKTVRLWDVSA-----SAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL---------  114 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~---------  114 (231)
                      +++....  .+++|.+.|.++     .+.+..+..+..+-.+.++||++.++++.  +..+.++|....+.         
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            4444443  367899999988     46677788889999999999999998875  47899999876542         


Q ss_pred             ---EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC----------cceeeeccCCCCCee-----EEEEcCC
Q psy6442         115 ---IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST----------GAEIESFKGHFGPIH-----CVKFSPD  176 (231)
Q Consensus       115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~----------~~~~~~~~~h~~~V~-----~v~~spd  176 (231)
                         ..+.......  +-..+++++....+---|..|-.|++..          ...+..+.-|..+-+     .=.-.||
T Consensus       365 ~~vvaevevGlGP--LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~d  442 (635)
T PRK02888        365 DAVVAEPELGLGP--LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEAD  442 (635)
T ss_pred             ceEEEeeccCCCc--ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCC
Confidence               2223222211  1122377777666767788899999865          233444444443332     2224678


Q ss_pred             CCEEEEee---CCCcE
Q psy6442         177 GELYASGS---EDGTL  189 (231)
Q Consensus       177 ~~~laS~s---~d~~v  189 (231)
                      |++|++..   .|+.+
T Consensus       443 gk~l~~~nk~skdrfl  458 (635)
T PRK02888        443 GKWLVSLNKFSKDRFL  458 (635)
T ss_pred             CCEEEEcccccccccc
Confidence            88887764   45444

>KOG0309|consensus

Probab=97.69  E-value=9e-05  Score=65.28  Aligned_cols=62  Identities=23%  Similarity=0.467  Sum_probs=48.7

Q ss_pred             EEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         138 FVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       138 ~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +.+.+....|++||.+.+ ..+..+++|...|++++|..- ...+.+++.|++|+.||.....+
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            334455566889999765 567889999999999999875 35788999999999999865443

>KOG0309|consensus

Probab=97.67  E-value=7.4e-05  Score=65.78  Aligned_cols=148  Identities=17%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             CCCceeeeccCC-CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce--EEEEe
Q psy6442           4 DGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV--QKLEF   80 (231)
Q Consensus         4 d~~~~~~~~~~g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~--~~~~~   80 (231)
                      ...+++|+..-| ..++++++|...|..++|+.-              -...+.+++.|++|++||.......  +++.-
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~--------------~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF--------------KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhh--------------hhhhhcccCCCCceeeecccccccccceeccc
Confidence            356889998655 578999999999999988753              1345889999999999998654321  11111


Q ss_pred             CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-cceee
Q psy6442          81 GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST-GAEIE  159 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-~~~~~  159 (231)
                      ..++..-.+.|=+.-.                               ++.+.-.+..+..-.-+..-..|+..+ .+.++
T Consensus       245 ~~piw~~r~~Pfg~g~-------------------------------~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh  293 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGEGY-------------------------------CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVH  293 (1081)
T ss_pred             cCcceeccccccCcee-------------------------------EeccccCCeeeeeccccchhhhhccccCCccee
Confidence            1122111122211100                               000000000000000011112344333 35789


Q ss_pred             eccCCCCCeeEEEEcCCC----------CEEEEeeCCCcEEEEeCCC
Q psy6442         160 SFKGHFGPIHCVKFSPDG----------ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       160 ~~~~h~~~V~~v~~spd~----------~~laS~s~d~~v~iwd~~~  196 (231)
                      +|.||...|...-|-..+          -.|++=|.|.++|+|-+.+
T Consensus       294 ~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  294 TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            999999988765554421          2799999999999999753

>KOG1354|consensus

Probab=97.67  E-value=0.0043  Score=50.41  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=88.9

Q ss_pred             cccccEEEEEECCCCceeEeccc------------------c-----------------ccccCCCEEEEEeCCCCEEEE
Q psy6442          23 GHKGCVWGVDINKDASKAASGAA------------------D-----------------FQAKNNTRLISCAEDKTVRLW   67 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~------------------d-----------------~~~~~~~~l~s~s~D~ti~iw   67 (231)
                      .|+=-|.++.++.|...++++..                  |                 |.+.....++-.|.-|+||+-
T Consensus       162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            67777899999999988888743                  0                 122244566767778999999


Q ss_pred             eCCCCCce----EEEE-------------eCCcceeEEEccCCCEEEEEcCCeEEEEECC-CcceEEeeeccc-------
Q psy6442          68 DVSASAEV----QKLE-------------FGAVPNSLEISRDGTTITVTHGSCVTFLDAN-SLELIKEHKVPA-------  122 (231)
Q Consensus        68 d~~~~~~~----~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~-------  122 (231)
                      |++.....    ..++             .-..+.++.|+++|++++....-++.+||.. ..+++.++..+.       
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            99843211    0011             1145678899999999988888899999984 344444433210       


Q ss_pred             -------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442         123 -------QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus       123 -------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                             -.....+.++++...+.+|+.....++++...|
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   001122334778888999999999999986554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.66  E-value=0.015  Score=54.66  Aligned_cols=132  Identities=16%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             cceeEEEccCCCEEEEEc-----C--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEEEEeC
Q psy6442          83 VPNSLEISRDGTTITVTH-----G--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMYKFDY  152 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~-----~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~~~d~  152 (231)
                      .-..++|..||.+++++.     +  ..+++|+.. +......+ +.....-.+.+.|.|.++|+...   ...|..|+ 
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-  287 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-  287 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-
Confidence            446788999999988752     2  467888865 22222222 22222223455889988887643   34565664 


Q ss_pred             CCcceeeecc----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee--eeeeccCCcccCCCCCCc
Q psy6442         153 STGAEIESFK----GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY--GLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       153 ~~~~~~~~~~----~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~  218 (231)
                      +.|.....|.    .....|..++|++|+..||.--.|. |.||...+-.=|  +.+......-...+.|++
T Consensus       288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  288 RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            4554444332    3456799999999999999988666 999998776532  445543333334456665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.64  E-value=0.0069  Score=51.41  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=84.4

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEE----
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHS----  126 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----  126 (231)
                      .+..++.++.++.+.-+|..+++.+-.......+.+--.-.++..++...++.+.-+|..+++.+..+....+...    
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            3566777888999999999999887766554432221111234444444567888899988888776654321100    


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-------CeeEEEEcC--CCCEEEEeeCCCcEEEEeCCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-------PIHCVKFSP--DGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-------~V~~v~~sp--d~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ......  +..++.+..++.+..+|..+|+.+...+-...       ....+.-+|  .+..+..++.++.+...|..+|
T Consensus       199 ~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        199 SAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence            000001  12355667788888888888876544321000       011111233  2344555666777888888777


Q ss_pred             Ce
Q psy6442         198 KT  199 (231)
Q Consensus       198 ~~  199 (231)
                      +.
T Consensus       277 ~~  278 (394)
T PRK11138        277 QI  278 (394)
T ss_pred             CE
Confidence            64

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.63  E-value=0.016  Score=50.17  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             EEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          76 QKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        76 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      ..+.++..+.+++++|+...++.+ .|+.+.+||....... ..+.+....  .+.++|++.+++.|+..|.+.+||+..
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~--~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPT--LIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccce--EEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            445677899999999999877665 5899999998655322 223333233  344599999999999999999999865


Q ss_pred             c
Q psy6442         155 G  155 (231)
Q Consensus       155 ~  155 (231)
                      +
T Consensus       331 s  331 (545)
T PF11768_consen  331 S  331 (545)
T ss_pred             C
Confidence            4

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.59  E-value=0.032  Score=47.35  Aligned_cols=146  Identities=11%  Similarity=0.101  Sum_probs=87.1

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc--------eeEEEcc---CCCEEEEEcCCeEEEEECCCcceEEeeecc
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--------NSLEISR---DGTTITVTHGSCVTFLDANSLELIKEHKVP  121 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~--------~~v~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  121 (231)
                      ..++.++.++.+...|..+++.+.........        ..+..+|   ++..++.+.++.+.-+|..+.+.+......
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            45666778899988998888766544321110        0011111   333334456778888888887766554332


Q ss_pred             ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ... .  ..  ..+..+..++.++.++.+|..+++.+.....-.. ...+..+  .+.+|..++.||.|.+.|..+|+..
T Consensus       286 ~~~-~--~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        286 SVN-D--FA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             Ccc-C--cE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            111 0  11  1233466677899999999999887654321111 1111112  2456777899999999999999876


Q ss_pred             eeeec
Q psy6442         201 GLWKC  205 (231)
Q Consensus       201 ~~~~~  205 (231)
                      ...+.
T Consensus       359 ~~~~~  363 (394)
T PRK11138        359 AQQKV  363 (394)
T ss_pred             EEEEc
Confidence            65543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.48  E-value=0.038  Score=45.45  Aligned_cols=191  Identities=17%  Similarity=0.228  Sum_probs=117.4

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-   82 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-   82 (231)
                      .+++++.|+++++++.....  +..-.+..+|+++.+..+..-+.-     +.=|-...-|.+||..+-.....+.++. 
T Consensus        16 ~~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR-----~~rG~RtDvv~~~D~~TL~~~~EI~iP~k   88 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSR-----GTRGERTDVVEIWDTQTLSPTGEIEIPPK   88 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEE-----TTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred             cceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEec-----cccccceeEEEEEecCcCcccceEecCCc
Confidence            46899999999999888763  233345678998877665432221     1111123357899999988887777653 


Q ss_pred             -------cceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeC
Q psy6442          83 -------VPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDY  152 (231)
Q Consensus        83 -------~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~  152 (231)
                             .....+++.|++.+++.+   ...+.+.|+...+.+.++..|.-...+   +.+. +-+.+-+.||.+....+
T Consensus        89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iy---P~~~-~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIY---PSGN-RGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEE---EEET-TEEEEEETTSCEEEEEE
T ss_pred             chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEE---ecCC-CceEEEecCCceEEEEE
Confidence                   234668899999888743   468999999999999888877533221   2222 33566677888877776


Q ss_pred             C-Ccceee----eccCCCCCee-EEEEcCCCCEEEEeeCCCcEEEEeCCCCCe--eeeeec
Q psy6442         153 S-TGAEIE----SFKGHFGPIH-CVKFSPDGELYASGSEDGTLRLWQTNVGKT--YGLWKC  205 (231)
Q Consensus       153 ~-~~~~~~----~~~~h~~~V~-~v~~spd~~~laS~s~d~~v~iwd~~~~~~--~~~~~~  205 (231)
                      . .|+...    .|..-..++. .-+++..+..+.=-+.+|.|+--|+...+.  ...|+.
T Consensus       165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            5 444332    1222223332 334555555555578888888888766553  234553

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4714|consensus

Probab=97.41  E-value=0.00088  Score=52.32  Aligned_cols=57  Identities=26%  Similarity=0.485  Sum_probs=48.5

Q ss_pred             CCcCCCceeeeccCCCe-EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      |+.||-+.||+...... ...|+.|+.++|.+.|+|.              ++..|.+|+.||.+--||..+
T Consensus       198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk--------------~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK--------------NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC--------------CchheeEecCCCcEEEEcCCC
Confidence            46899999999877754 4557899999999999985              466799999999999999865

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.40  E-value=0.036  Score=47.41  Aligned_cols=39  Identities=23%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+++..+++||+++++|--..+|.+.|....-.+.+...
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            368999999999999999999999998887555544333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.40  E-value=0.017  Score=54.22  Aligned_cols=160  Identities=17%  Similarity=0.159  Sum_probs=95.4

Q ss_pred             CCCEEEEEeCCCCEEEE----eCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeE
Q psy6442          51 NNTRLISCAEDKTVRLW----DVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVH  125 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~  125 (231)
                      +...++.+..+|.|.+.    +.........-..+..+.+++|+||+..+++ +..+.+.++. ++..++.+......  
T Consensus        86 d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~--  162 (928)
T PF04762_consen   86 DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSD--  162 (928)
T ss_pred             CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcc--
Confidence            45567777888999988    5555444333345778999999999998765 4556777764 44455544332211  


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcce--------------eeeccCCCCCeeEEEEcCCCCEEEEeeC---C--
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--------------IESFKGHFGPIHCVKFSPDGELYASGSE---D--  186 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--------------~~~~~~h~~~V~~v~~spd~~~laS~s~---d--  186 (231)
                            .......++.|+..+=--|.-+.++.              ...+. +...-..++|-.||.++|..+.   .  
T Consensus       163 ------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~  235 (928)
T PF04762_consen  163 ------DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGS  235 (928)
T ss_pred             ------ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCc
Confidence                  01111233333332211122111111              11122 3344567999999999988874   2  


Q ss_pred             -CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         187 -GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       187 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                       +.+|||+-+ |+.... .+-.+++...++|-++|.+
T Consensus       236 ~R~iRVy~Re-G~L~st-SE~v~gLe~~l~WrPsG~l  270 (928)
T PF04762_consen  236 RRVIRVYSRE-GELQST-SEPVDGLEGALSWRPSGNL  270 (928)
T ss_pred             eeEEEEECCC-ceEEec-cccCCCccCCccCCCCCCE
Confidence             578999965 654433 3356788889999998864

>KOG1275|consensus

Probab=97.38  E-value=0.0074  Score=54.86  Aligned_cols=171  Identities=14%  Similarity=0.201  Sum_probs=106.8

Q ss_pred             eecccccEEEEEECCCCc---eeEec-cccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCE
Q psy6442          21 FEGHKGCVWGVDINKDAS---KAASG-AADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTT   95 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~---~~~s~-~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~   95 (231)
                      ..||+..+-.++++....   .-.++ +.-..-.+++.+.+|..-|+|.+-|..+.+.+.++.. ...+.+  ++-.|+.
T Consensus       152 ~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNl  229 (1118)
T KOG1275|consen  152 MGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNL  229 (1118)
T ss_pred             ecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCe
Confidence            345666666666654321   11111 1112224678899999999999999999998888764 333333  3444555


Q ss_pred             EEEE----------cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCC---Ccc-eeeec
Q psy6442          96 ITVT----------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYS---TGA-EIESF  161 (231)
Q Consensus        96 ~~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~---~~~-~~~~~  161 (231)
                      ++..          .|.-+.+||++..+.+..+..+.....+.+.+. -...++..+..|.....|..   ... ....+
T Consensus       230 LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v  308 (1118)
T KOG1275|consen  230 LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV  308 (1118)
T ss_pred             EEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc-ccceEEEEecccceeeccccccCCCccceeEE
Confidence            5432          234577899998888777665543333333222 23346666778888887742   211 11222


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       162 ~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .--...+..+.+|++++.+|-+..+|.|.+|--
T Consensus       309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            222334899999999999999999999999983

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.38  E-value=0.045  Score=43.16  Aligned_cols=159  Identities=13%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe------CCcceeEEEccCCCEEEEEcC---------CeEEEEECCCcceEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRDGTTITVTHG---------SCVTFLDANSLELIK  116 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~  116 (231)
                      +..|+.+..++ +.++|..+++.......      ...++.+++.|+|...+....         +.+..++.. .+...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            35566666544 55569888866544443      135789999999985544321         346666665 33222


Q ss_pred             eeeccceeEEEEEEecCCCCEEE-EecCCCeEEEEeCCCc-c------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCc
Q psy6442         117 EHKVPAQVHSASLLLNSERPIFV-CGGEDLKMYKFDYSTG-A------EIESFKGHFGPIHCVKFSPDGELYASGSEDGT  188 (231)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~~~d~~~~-~------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~  188 (231)
                      ....-...+.+.+  +++++.+. +-+..++|+.++.... .      ....+..-.+..-.+++.++|+++++.-..+.
T Consensus       129 ~~~~~~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  129 VADGLGFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEEEESSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             EecCcccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            2221122233344  78887654 5677788999988532 2      12223322334778999999999998888999


Q ss_pred             EEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442         189 LRLWQTNVGKTYGLWKCIEGGLNNSLGL  216 (231)
Q Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (231)
                      |.+++.. |+.....+.- ...+..+.|
T Consensus       207 I~~~~p~-G~~~~~i~~p-~~~~t~~~f  232 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELP-VPRPTNCAF  232 (246)
T ss_dssp             EEEEETT-SCEEEEEE-S-SSSEEEEEE
T ss_pred             EEEECCC-ccEEEEEcCC-CCCEEEEEE
Confidence            9999998 8888777653 234444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920|consensus

Probab=97.34  E-value=0.015  Score=54.42  Aligned_cols=199  Identities=15%  Similarity=0.172  Sum_probs=109.0

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccc---------cccccCCCEE----------EEEeCCCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA---------DFQAKNNTRL----------ISCAEDKT   63 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~---------d~~~~~~~~l----------~s~s~D~t   63 (231)
                      .+|.+.+.++.++..--. ..-.+.|.++.|+||++.++-...         +|.+-..+.|          ++.|+.+.
T Consensus        88 ~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrk  166 (1265)
T KOG1920|consen   88 ALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRK  166 (1265)
T ss_pred             cCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceeccccc
Confidence            356666777666654221 123457889999999886654322         2333222223          55555441


Q ss_pred             EEEEeCCCCCc-----e------EEEEeCCcceeEEEccCCCEEEEE-----cC-CeEEEEECCCcceEEeeeccceeEE
Q psy6442          64 VRLWDVSASAE-----V------QKLEFGAVPNSLEISRDGTTITVT-----HG-SCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        64 i~iwd~~~~~~-----~------~~~~~~~~~~~v~~~~~~~~~~~~-----~~-~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                      =-=+.-..++.     +      ..++....-.++.|..||.+++++     .+ ..+++||.. + .+.....+.....
T Consensus       167 eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~  244 (1265)
T KOG1920|consen  167 ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQ  244 (1265)
T ss_pred             ceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccc
Confidence            11111111100     0      001122334569999999988773     34 689999976 2 2222222221122


Q ss_pred             EEEEecCCCCEEEEec---CCCeEEEEeCCCcceee----eccCCCCCeeEEEEcCCCCEEEE---eeCCCcEEEEeCCC
Q psy6442         127 ASLLLNSERPIFVCGG---EDLKMYKFDYSTGAEIE----SFKGHFGPIHCVKFSPDGELYAS---GSEDGTLRLWQTNV  196 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~---~d~~i~~~d~~~~~~~~----~~~~h~~~V~~v~~spd~~~laS---~s~d~~v~iwd~~~  196 (231)
                      -++.+.|.|..+++-.   .|..|.+|+- .|....    .++....+|..++|+.++.+||.   +.....|++|-+.+
T Consensus       245 ~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  245 HSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            2344477787777642   3456877753 333222    23334455999999999999988   56666699999866


Q ss_pred             CCee--eeeec
Q psy6442         197 GKTY--GLWKC  205 (231)
Q Consensus       197 ~~~~--~~~~~  205 (231)
                      -.-+  +.|+.
T Consensus       324 yhWYLKq~l~~  334 (1265)
T KOG1920|consen  324 YHWYLKQELQF  334 (1265)
T ss_pred             eEEEEEEEEec
Confidence            5432  44553

>KOG4640|consensus

Probab=97.28  E-value=0.0015  Score=56.76  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCee-EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH-CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~-~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      .++|.-.++|.+..++.+.+..+. -+.+.+++-|..+++ +++|.|||.+||.|-.||+|+|-|+.++.....
T Consensus        27 ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   27 EWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            348888999999999988887766 677888877777777 999999999999999999999999998876544

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.25  E-value=0.061  Score=47.80  Aligned_cols=166  Identities=13%  Similarity=0.127  Sum_probs=102.8

Q ss_pred             EEEEEEC--CCCceeEecccccccc--CCCEEE-EEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--
Q psy6442          28 VWGVDIN--KDASKAASGAADFQAK--NNTRLI-SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--  100 (231)
Q Consensus        28 V~~~~~~--~~~~~~~s~~~d~~~~--~~~~l~-s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--  100 (231)
                      ++.+.|.  |...+++-++....+.  +++.+. +.-..+.+-+.|..+.+....+..+..+..+.++|++..++++.  
T Consensus       176 ~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyN  255 (635)
T PRK02888        176 IHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYN  255 (635)
T ss_pred             ccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccC
Confidence            3444443  4444544444332222  333332 33344566677888777777777777888888888888877653  


Q ss_pred             ---------------------------------------CCeEEEEECCC-----cceEEeeeccceeEEEEEEecCCCC
Q psy6442         101 ---------------------------------------GSCVTFLDANS-----LELIKEHKVPAQVHSASLLLNSERP  136 (231)
Q Consensus       101 ---------------------------------------~~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  136 (231)
                                                             ++.+.++|..+     ...+..+..+...+.+.  .+|+++
T Consensus       256 sE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~--vSPDGk  333 (635)
T PRK02888        256 SEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVN--TSPDGK  333 (635)
T ss_pred             cccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceE--ECCCCC
Confidence                                                   13355556554     33444444444444433  488888


Q ss_pred             EEEEe-cCCCeEEEEeCCCcce------------eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         137 IFVCG-GEDLKMYKFDYSTGAE------------IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       137 ~~~~g-~~d~~i~~~d~~~~~~------------~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      .++.+ ..+.++-++|+.+.+.            ..+.+--.+ ....+|.++|..+.|---|..|-.||+..
T Consensus       334 ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        334 YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            76655 4577888999876442            233332222 34578999999999999999999999865

>KOG2114|consensus

Probab=97.23  E-value=0.047  Score=49.50  Aligned_cols=144  Identities=15%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             CEEEEEeCCCC-----EEEEeCCCC------Cce---EEEE--eC---CcceeEEEccCCCEEEEEc-CCeEEEEECCC-
Q psy6442          53 TRLISCAEDKT-----VRLWDVSAS------AEV---QKLE--FG---AVPNSLEISRDGTTITVTH-GSCVTFLDANS-  111 (231)
Q Consensus        53 ~~l~s~s~D~t-----i~iwd~~~~------~~~---~~~~--~~---~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~-  111 (231)
                      ..|++-+.|++     ++|||+...      .+.   +...  .+   .++..++++.+-+.++++. +|.|..+...- 
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            46888888765     899998643      223   1122  12   3456888888888887775 56777665321 


Q ss_pred             --cc--eEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         112 --LE--LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       112 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                        ..  ..-.++...+++...+...+...++++  ...+|..|.+.... .+..+..|..+++|.++++.-..++.|+ .
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~  234 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-S  234 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-C
Confidence              11  111233445666666543333323333  44556666665323 3555778889999999999766455444 3


Q ss_pred             CcEEEEeCCCCCe
Q psy6442         187 GTLRLWQTNVGKT  199 (231)
Q Consensus       187 ~~v~iwd~~~~~~  199 (231)
                      ..|.+|+....+.
T Consensus       235 e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  235 EFLYFYDSDGRGP  247 (933)
T ss_pred             ceEEEEcCCCcce
Confidence            4588888754443

>KOG3617|consensus

Probab=97.22  E-value=0.00099  Score=59.91  Aligned_cols=110  Identities=19%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             cceeEEEccCCCEEEEE-----cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          83 VPNSLEISRDGTTITVT-----HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      .+.-.+|+|....+++.     .++.+.++- .++++.+....|....+.+|  +|...+++.|=+.+.+.+|...+.+.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCW--Hpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCW--HPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhcc--ChHHHHHhhccccceeEEEecCCcee
Confidence            34555788887776653     245565542 23333333344444444555  88888888888888999998765443


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      .....-|.++|.-+.|||+|..++|+..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            33345799999999999999999999999999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.18  E-value=0.034  Score=47.92  Aligned_cols=142  Identities=18%  Similarity=0.200  Sum_probs=73.8

Q ss_pred             cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEE
Q psy6442          27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF  106 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~  106 (231)
                      ....+..+|.|+               .++. ..||.-.|+.....+   ... ........|.+.+.+.+....+.|.+
T Consensus        34 ~p~~ls~npngr---------------~v~V-~g~geY~iyt~~~~r---~k~-~G~g~~~vw~~~n~yAv~~~~~~I~I   93 (443)
T PF04053_consen   34 YPQSLSHNPNGR---------------FVLV-CGDGEYEIYTALAWR---NKA-FGSGLSFVWSSRNRYAVLESSSTIKI   93 (443)
T ss_dssp             --SEEEE-TTSS---------------EEEE-EETTEEEEEETTTTE---EEE-EEE-SEEEE-TSSEEEEE-TTS-EEE
T ss_pred             CCeeEEECCCCC---------------EEEE-EcCCEEEEEEccCCc---ccc-cCceeEEEEecCccEEEEECCCeEEE
Confidence            355677777644               3444 457777777733222   211 23456678888666555555677887


Q ss_pred             EECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       107 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      +.--.....+.+..+..+.  .+  .+ |.++...+.+ .|.+||+.+++.+..+.-.  +|..|.||+++.++|-.+.+
T Consensus        94 ~kn~~~~~~k~i~~~~~~~--~I--f~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPFSVE--KI--FG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             EETTEE-TT-----SS-EE--EE--E--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred             EEcCccccceEEcCCcccc--eE--Ec-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence            6432222222333333222  22  12 5556655444 7899999999999888633  48999999999999988865


Q ss_pred             CcEEEEeCCCC
Q psy6442         187 GTLRLWQTNVG  197 (231)
Q Consensus       187 ~~v~iwd~~~~  197 (231)
                       ++.|.+....
T Consensus       166 -~i~il~~~~~  175 (443)
T PF04053_consen  166 -SIYILKYNLE  175 (443)
T ss_dssp             -SEEEEEE-HH
T ss_pred             -eEEEEEecch
Confidence             5888775443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1912|consensus

Probab=97.15  E-value=0.0034  Score=56.04  Aligned_cols=131  Identities=13%  Similarity=0.168  Sum_probs=90.9

Q ss_pred             cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcCCeEE
Q psy6442          27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVT  105 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~i~  105 (231)
                      .-.+++|+|.|                .++-| ....|-+-|.++-+.+..+++. ..++.+.|.|.....         
T Consensus        17 N~~A~Dw~~~G----------------LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~---------   70 (1062)
T KOG1912|consen   17 NRNAADWSPSG----------------LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPR---------   70 (1062)
T ss_pred             cccccccCccc----------------eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCch---------
Confidence            34567888765                22323 3456778888887777777654 457777777743211         


Q ss_pred             EEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCC---C-CEEE
Q psy6442         106 FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPD---G-ELYA  181 (231)
Q Consensus       106 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd---~-~~la  181 (231)
                                       .    .........+++++.-.|+|-+||...+..+..+..|..++-.+.|-|.   . .+|+
T Consensus        71 -----------------~----llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   71 -----------------D----LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             -----------------h----ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence                             0    0100123445778888899999999988888888889999999999884   3 4677


Q ss_pred             EeeCCCcEEEEeCCCCCeeeeee
Q psy6442         182 SGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       182 S~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .-..-.+|.+|+..+|..+..-+
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccc
Confidence            77788999999999998654333

>KOG1645|consensus

Probab=97.14  E-value=0.0054  Score=50.78  Aligned_cols=164  Identities=13%  Similarity=0.017  Sum_probs=92.9

Q ss_pred             eeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeE
Q psy6442           8 MLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL   87 (231)
Q Consensus         8 ~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v   87 (231)
                      +..+..+-+-+.-+.+|...|..++|+|.              +...+..++.+.+|+|.|+++..++........+.++
T Consensus       176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~--------------~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC  241 (463)
T KOG1645|consen  176 QKLESHDFKSSQILPGEGSFIRDLAFSPF--------------NEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSC  241 (463)
T ss_pred             EEeccCCcchhhcccccchhhhhhccCcc--------------ccceeeeeccCceEEEEecccceeeeheeccCCceee
Confidence            33333333334444556666666666664              4556889999999999999998888877777889999


Q ss_pred             EEccCCCE-EEEEc-CCeEEEEECCCcceE-Eeeec---cceeEEEEE----EecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          88 EISRDGTT-ITVTH-GSCVTFLDANSLELI-KEHKV---PAQVHSASL----LLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        88 ~~~~~~~~-~~~~~-~~~i~~~d~~~~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +|.-+... ++++. .|.+.++|.+..+-. .....   ..++..+..    ...+.+.+++....+-+.|..-...+..
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECL  321 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCC
Confidence            99988764 55554 578899998754321 11110   011111110    0123444556555555433322222222


Q ss_pred             eeecc-CCCCCeeEEEEcCC-CCEEEEeeC
Q psy6442         158 IESFK-GHFGPIHCVKFSPD-GELYASGSE  185 (231)
Q Consensus       158 ~~~~~-~h~~~V~~v~~spd-~~~laS~s~  185 (231)
                      ...++ +..+...++++.+- ++.|+|.-.
T Consensus       322 p~vlele~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             CcccccCCCcceeeeeecCccceEEEEecC
Confidence            22222 23456666777663 345555543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.12  E-value=0.022  Score=52.07  Aligned_cols=133  Identities=14%  Similarity=0.174  Sum_probs=85.5

Q ss_pred             eCCCCEEEEeCCCCCceEEEEeCCcceeEEEccC--------CCEEEEEcCCeEEEEECCCcc--eEEe--eeccceeEE
Q psy6442          59 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD--------GTTITVTHGSCVTFLDANSLE--LIKE--HKVPAQVHS  126 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~~i~~~d~~~~~--~~~~--~~~~~~~~~  126 (231)
                      .....+.-.|+..|+.+........+.-..+.|+        .++++...++.+..||.+-..  .+..  +........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            3457788889999998888776543323334442        234445566788889977432  2211  111122222


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .++....+| .+|.|+.+|.||+||- .+..-. .+++-..||..|..+.||++++..+ +..+-|.++
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            233334444 5889999999999994 343333 3567789999999999999887665 455888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0882|consensus

Probab=97.07  E-value=0.0055  Score=51.48  Aligned_cols=144  Identities=19%  Similarity=0.223  Sum_probs=96.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE----eCCcceeEEEccCCCEEEE-Ec-CCeEEEEECCCcceEEeeeccceeE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE----FGAVPNSLEISRDGTTITV-TH-GSCVTFLDANSLELIKEHKVPAQVH  125 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~  125 (231)
                      .+.+.++|.||.+|.|--..-.-+..+.    +-..+.+++.+.++..... .. +..++++|..+...+..++......
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg   99 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG   99 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence            4568999999999999754422222221    2346678888888876654 33 5577888876665554444433223


Q ss_pred             EEEEEecCC---CCEEEEecCCCeEEEEeCCCcc-ee-eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         126 SASLLLNSE---RPIFVCGGEDLKMYKFDYSTGA-EI-ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       126 ~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~-~~-~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      .+.+...+.   ..+.++.-.++.+.++|..... +. ..-.-|..||..+.+.|.+.-+.|....|-|.-|...
T Consensus       100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen  100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence            334433332   1333444567889999976443 23 2334599999999999999999999999999999976

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.06  E-value=0.019  Score=49.26  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEE--EeCCCCCceEEEEeC
Q psy6442           6 KPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRL--WDVSASAEVQKLEFG   81 (231)
Q Consensus         6 ~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~i--wd~~~~~~~~~~~~~   81 (231)
                      .+++++.++|+.  +.++.++..   .-+|+|||+++              +.+...|+...|  .|+..+...+.....
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l--------------~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~  281 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKL--------------AFSSSRDGSPDIYLMDLDGKNLPRLTNGF  281 (425)
T ss_pred             eEEEEeccCCccceeeccCCccC---CccCCCCCCEE--------------EEEECCCCCccEEEEcCCCCcceecccCC
Confidence            366677766653  333444433   34677877554              456666776555  467666643322222


Q ss_pred             CcceeEEEccCCCEEEEEcC--C--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC-C--eEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVTHG--S--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED-L--KMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~--~i~~~d~~~  154 (231)
                      ..-..=.|+|||+.++...+  +  .|.+++....... .......... ...++|++..++..+.. +  .|.+.|..+
T Consensus       282 gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         282 GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            22234478999997664332  2  5566666555442 2222111111 23348888888766532 3  366666665


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeC
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSE  185 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~  185 (231)
                      +..++.+. +......-.+.|++..+...+.
T Consensus       360 ~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         360 GGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            55333332 2223334567888876655543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.15  Score=43.11  Aligned_cols=169  Identities=15%  Similarity=0.216  Sum_probs=113.0

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc----CCeEEEEECCCcceEEeeeccceeEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH----GSCVTFLDANSLELIKEHKVPAQVHSAS  128 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~  128 (231)
                      +..++...+..|.+.|....+....+..+..+..++++|++..++++.    ++.+...|..+...++........  ..
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P--~~  164 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP--TG  164 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc--ce
Confidence            356666667999999988888888888888899999999999888754    368888998888777764433212  33


Q ss_pred             EEecCCCCEEEEe-cCCCeEEEEeCCCcceee-e---ccCCCCCeeEEEEcCCCCEEEEe-eCC--CcEEEEeCCCCCee
Q psy6442         129 LLLNSERPIFVCG-GEDLKMYKFDYSTGAEIE-S---FKGHFGPIHCVKFSPDGELYASG-SED--GTLRLWQTNVGKTY  200 (231)
Q Consensus       129 ~~~~~~~~~~~~g-~~d~~i~~~d~~~~~~~~-~---~~~h~~~V~~v~~spd~~~laS~-s~d--~~v~iwd~~~~~~~  200 (231)
                      +..+|++..+... ..+.++.++|.......+ .   ...-......+.++|++.++-.. ..+  +.+.+.|..+++..
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            4458888855544 467889999976554442 1   01112234678999999854444 333  68999999888765


Q ss_pred             eeeeccCCc-ccCCCCCCccccccc
Q psy6442         201 GLWKCIEGG-LNNSLGLDSSGHLNN  224 (231)
Q Consensus       201 ~~~~~~~~~-~~~~~~~~~~~~~~~  224 (231)
                      .. ....+. ....+.+.++|...-
T Consensus       245 ~~-~~~~~~~~~~~v~~~p~g~~~y  268 (381)
T COG3391         245 AT-DLPVGSGAPRGVAVDPAGKAAY  268 (381)
T ss_pred             Ee-ccccccCCCCceeECCCCCEEE
Confidence            43 112222 455566666665543

>KOG1920|consensus

Probab=97.06  E-value=0.051  Score=51.04  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEe-------------
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKE-------------  117 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~-------------  117 (231)
                      ...++.+..+|.|.+-|..+......-.....+...+|+||+..++...+ .++.+.. .+..++..             
T Consensus        80 ~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~  158 (1265)
T KOG1920|consen   80 TNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKF  158 (1265)
T ss_pred             cceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcccccccccccccc
Confidence            44566777789999988876654333334567889999999998765544 4444432 11111000             


Q ss_pred             -----------eec------------c--------ceeEEEEEEecCCCCEEEEe-----cCCCeEEEEeCCCcceeeec
Q psy6442         118 -----------HKV------------P--------AQVHSASLLLNSERPIFVCG-----GEDLKMYKFDYSTGAEIESF  161 (231)
Q Consensus       118 -----------~~~------------~--------~~~~~~~~~~~~~~~~~~~g-----~~d~~i~~~d~~~~~~~~~~  161 (231)
                                 +..            +        ...+...+.+..+|.+++..     .....|++||-+ +.+-..-
T Consensus       159 v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s  237 (1265)
T KOG1920|consen  159 VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS  237 (1265)
T ss_pred             ceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc
Confidence                       000            0        00111224457888887762     223679999875 3322211


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEee---CCCcEEEEeC
Q psy6442         162 KGHFGPIHCVKFSPDGELYASGS---EDGTLRLWQT  194 (231)
Q Consensus       162 ~~h~~~V~~v~~spd~~~laS~s---~d~~v~iwd~  194 (231)
                      +.-.+.=.+++|-|.|.++|+-.   .|+.|.+|.-
T Consensus       238 e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  238 EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             CcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            11222335789999999998874   4667888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.17  Score=42.81  Aligned_cols=136  Identities=16%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEEEEeCCCcc
Q psy6442          82 AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMYKFDYSTGA  156 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~~~d~~~~~  156 (231)
                      ..+..++.++.+..+++..  .+.+.+.|..................+.  .++++..+..+..   +.++.+.|..+..
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~--~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLA--VDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEE--ECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            4567889999999877765  5789999977766666654433222333  3666655554433   6889999998888


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCeeeeee----ccCCcccCCCCCCcccc
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNVGKTYGLWK----CIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  221 (231)
                      .+.+...-..+ ..++++|+|.. +++-+.++.|.+.|...-+... ++    .-....++-+.++++|.
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~  219 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGN  219 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCC
Confidence            77765433344 89999999984 4555689999999976665443 22    33445556667766665

>KOG1912|consensus

Probab=96.96  E-value=0.022  Score=51.08  Aligned_cols=83  Identities=13%  Similarity=0.033  Sum_probs=54.8

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcc
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVP   84 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~   84 (231)
                      -|-+-|..+-+.|+++.-|+..|..+.|+|..-...-.+-   ....-.|+++.-.|.|.+||...+..+..+.. ..++
T Consensus        36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~---~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSP---SSSQLLIASADISGRIILVDFVLASVINWLSHSNDSV  112 (1062)
T ss_pred             eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCc---cccceeEEeccccCcEEEEEehhhhhhhhhcCCCcch
Confidence            3556676777889999999999999999986422111110   01234577888889999999987766655543 3344


Q ss_pred             eeEEEcc
Q psy6442          85 NSLEISR   91 (231)
Q Consensus        85 ~~v~~~~   91 (231)
                      ..++|-+
T Consensus       113 qdl~W~~  119 (1062)
T KOG1912|consen  113 QDLCWVP  119 (1062)
T ss_pred             hheeeee
Confidence            5555543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.92  E-value=0.24  Score=43.38  Aligned_cols=138  Identities=16%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             CEEEEeCCCCCceEEEEeCCc-c------eeEEEc----cCCC---EEEEE-cCCeEEEEECCCcceEEeeeccceeEEE
Q psy6442          63 TVRLWDVSASAEVQKLEFGAV-P------NSLEIS----RDGT---TITVT-HGSCVTFLDANSLELIKEHKVPAQVHSA  127 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~~-~------~~v~~~----~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~  127 (231)
                      +|.-.|..+++.+-..+.... .      ....+.    -++.   .+++. .++.+.-+|..+.+.+........    
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~----  332 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ----  332 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc----
Confidence            677888888887766543211 0      000111    1232   34443 467888899988887766543200    


Q ss_pred             EEEecCCCCEEEE-----------------ecCCCeEEEEeCCCcceeeeccCC--C------CCeeEEEEcCCCCEEEE
Q psy6442         128 SLLLNSERPIFVC-----------------GGEDLKMYKFDYSTGAEIESFKGH--F------GPIHCVKFSPDGELYAS  182 (231)
Q Consensus       128 ~~~~~~~~~~~~~-----------------g~~d~~i~~~d~~~~~~~~~~~~h--~------~~V~~v~~spd~~~laS  182 (231)
                      ....++ +.+.+.                 ...++.+.-+|..+|+.+.+....  .      .+...-...-.+.++..
T Consensus       333 ~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~  411 (488)
T cd00216         333 PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA  411 (488)
T ss_pred             ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence            001122 111111                 124577888898888877665422  1      11111011124567888


Q ss_pred             eeCCCcEEEEeCCCCCeeeeeec
Q psy6442         183 GSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       183 ~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++.||.|..+|..+|+.....+.
T Consensus       412 g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         412 GAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ECCCCeEEEEECCCCceeeEEEC
Confidence            88999999999999998766654

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.89  E-value=0.004  Score=35.75  Aligned_cols=33  Identities=24%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      ..+|..++|+|...+||.++.+|.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356899999999999999999999999999 544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.81  E-value=0.19  Score=40.22  Aligned_cols=146  Identities=17%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEee-------------
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEH-------------  118 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-------------  118 (231)
                      ++.|+.|..+| +.+++.........+.....+..+...|+-..+++-.++.+..+++.........             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~   85 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT   85 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccc
Confidence            56788887777 9999984333333333334588899999888888777899999987654433311             


Q ss_pred             ecc--ceeEEEE-EEecCCCCEEEEecCCCeEEEEeCCCc-----ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442         119 KVP--AQVHSAS-LLLNSERPIFVCGGEDLKMYKFDYSTG-----AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR  190 (231)
Q Consensus       119 ~~~--~~~~~~~-~~~~~~~~~~~~g~~d~~i~~~d~~~~-----~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~  190 (231)
                      ..+  ..+...+ .........++. ....+|.+|.....     ...+++. -...+.+++|.  ++.++-+..++ ..
T Consensus        86 ~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~  160 (275)
T PF00780_consen   86 KLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FY  160 (275)
T ss_pred             cccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eE
Confidence            111  1222222 111222333333 33446666655332     3445544 33678899998  44666666444 88


Q ss_pred             EEeCCCCCeeeee
Q psy6442         191 LWQTNVGKTYGLW  203 (231)
Q Consensus       191 iwd~~~~~~~~~~  203 (231)
                      +.|+.++....+.
T Consensus       161 ~idl~~~~~~~l~  173 (275)
T PF00780_consen  161 LIDLNTGSPSELL  173 (275)
T ss_pred             EEecCCCCceEEe
Confidence            8899888776554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2066|consensus

Probab=96.79  E-value=0.055  Score=48.71  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE--
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL--   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~--   78 (231)
                      ||+||+|.+-+..+++...++. -.-++-+++++|+-.          -+..+++++||.-| +.++.-.-......+  
T Consensus        89 CS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~----------~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l  156 (846)
T KOG2066|consen   89 CSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFS----------RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL  156 (846)
T ss_pred             ecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchh----------hhhhhheeecCcce-EEEehhhhhcCccceee
Confidence            6899999999999999888765 346788999999721          13356788888777 766653322111111  


Q ss_pred             -EeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec
Q psy6442          79 -EFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        79 -~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  120 (231)
                       .-.+++.++.|..  ..++.+.+-.++++|....+.+.....
T Consensus       157 ~~~eG~I~~i~W~g--~lIAWand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  157 SEGEGPIHSIKWRG--NLIAWANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             ecCccceEEEEecC--cEEEEecCCCcEEEeccccceeeccCC
Confidence             2246788888874  577777788899999988777665544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.74  E-value=0.25  Score=40.67  Aligned_cols=181  Identities=16%  Similarity=0.161  Sum_probs=98.0

Q ss_pred             CCceeeeccCCCeEeeeeccc-ccEE---EEEECCC----CceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC----
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHK-GCVW---GVDINKD----ASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS----   72 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~-~~V~---~~~~~~~----~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~----   72 (231)
                      ..|+|.|+.+.+.+.++.=.. ..+.   .+.+..+    ..+++-|..-....+.     ....|.|.++++...    
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~-----~~~~Gri~v~~i~~~~~~~   76 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDP-----EPSSGRILVFEISESPENN   76 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSS-----S-S-EEEEEEEECSS----
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccc-----cccCcEEEEEEEEcccccc
Confidence            357899998888887765222 2233   3444432    1222211110000000     001277889988873    


Q ss_pred             Cc---eEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcc-eEEeeeccceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          73 AE---VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLE-LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        73 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ..   +.....+.++++++.- .+ .++++.++.+.+++....+ .......+.+....++..  .+..++.|.....+.
T Consensus        77 ~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   77 FKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVS  152 (321)
T ss_dssp             -EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEE
T ss_pred             eEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEE
Confidence            12   2333456778888766 33 4777778899998877666 444433333333333322  244677776665555


Q ss_pred             E--EeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         149 K--FDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       149 ~--~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      +  |+....+ +..+.  .....++++.|-+++..++.+..+|.+.++...
T Consensus       153 ~~~~~~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  153 LLRYDEENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            4  4543222 22221  223457888888676799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.73  E-value=0.31  Score=41.65  Aligned_cols=144  Identities=15%  Similarity=0.163  Sum_probs=88.7

Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCC-----ceEEEEeCCcceeEEEcc-----CCCEEEEEcCCeEEEEECCCc-------
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASA-----EVQKLEFGAVPNSLEISR-----DGTTITVTHGSCVTFLDANSL-------  112 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~-----~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~i~~~d~~~~-------  112 (231)
                      .+..+|+.||..|.+|||+...+.     .+...+++.++..++.-+     +...+++-+-..+.+|.....       
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            345689999999999999986543     344455667777776532     334677777777777764211       


Q ss_pred             -----ceEEeeeccceeEEEEEEe--cCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         113 -----ELIKEHKVPAQVHSASLLL--NSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       113 -----~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                           +.+.++..+......+.-.  ... ..++..-+-||++.+|+.+.-...+.+.. .--.--+.|.|.-..|++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence                 1122233332222222211  122 34566778999999998765443333333 22223467888888889999


Q ss_pred             CCCcEEEEeC
Q psy6442         185 EDGTLRLWQT  194 (231)
Q Consensus       185 ~d~~v~iwd~  194 (231)
                      .+..|.-|..
T Consensus       194 ss~~l~~Yky  203 (418)
T PF14727_consen  194 SSWTLECYKY  203 (418)
T ss_pred             CceeEEEecH
Confidence            8888888875

>KOG2041|consensus

Probab=96.73  E-value=0.016  Score=51.62  Aligned_cols=153  Identities=15%  Similarity=0.128  Sum_probs=94.2

Q ss_pred             cccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc---------e------EEEE-eCCcceeEE
Q psy6442          25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE---------V------QKLE-FGAVPNSLE   88 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~---------~------~~~~-~~~~~~~v~   88 (231)
                      .....++.|+.+               ..+++.+|.||.+|+-.+.+...         .      ++++ +...+..+.
T Consensus        14 nvkL~c~~WNke---------------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT   78 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE---------------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT   78 (1189)
T ss_pred             CceEEEEEEccc---------------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE
Confidence            456788899876               45689999999999987754321         0      1111 345778888


Q ss_pred             EccCCCEEEEEc-CCeEEEEECCCcceEEe-eeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee--eeccCC
Q psy6442          89 ISRDGTTITVTH-GSCVTFLDANSLELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI--ESFKGH  164 (231)
Q Consensus        89 ~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~--~~~~~h  164 (231)
                      |..+.+.+..+. ++-|.+|-+-.+.-..+ +....+....++.++.+|..+....+||.|.+=.+. |..+  +.+++.
T Consensus        79 WNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~  157 (1189)
T KOG2041|consen   79 WNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQ  157 (1189)
T ss_pred             eccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchh
Confidence            998888887765 56777776543322211 111122222334447777777666677666543332 2222  122221


Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                        ....+.||||.+.+.-+-.+|.++|+|-+
T Consensus       158 --~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  158 --LLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             --eccceeecccHHHHHhhhcCCcEEEeccc
Confidence              12367899999888888889999999964

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.59  E-value=0.27  Score=39.15  Aligned_cols=147  Identities=16%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             CCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCcce--eEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEE
Q psy6442          52 NTRLISCAEDK--TVRLWDVSASAEVQKLEFGAVPN--SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSA  127 (231)
Q Consensus        52 ~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  127 (231)
                      +..+-|+|.-|  .|+.+|+.+++......++...+  .+....+.-..+.-..+...++|..+.+.+.++..+.+--.+
T Consensus        56 g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGL  135 (264)
T PF05096_consen   56 GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGL  135 (264)
T ss_dssp             TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EE
T ss_pred             CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceEE
Confidence            44456666665  68899999999888887776543  445554433333445678889999999988888776544333


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-----FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-----~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +    .++..++......+++.+|..+-+...++.-.     ...++.+.|- +|.++|-.=....|..-|..+|++...
T Consensus       136 t----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  136 T----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             E----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred             E----cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence            3    35566777777888999998876665554321     2346677775 677888777788888999999998764


Q ss_pred             e
Q psy6442         203 W  203 (231)
Q Consensus       203 ~  203 (231)
                      .
T Consensus       211 i  211 (264)
T PF05096_consen  211 I  211 (264)
T ss_dssp             E
T ss_pred             E
Confidence            4

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1832|consensus

Probab=96.56  E-value=0.0017  Score=58.75  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=101.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------C--CCE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------N--NTR   54 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~--~~~   54 (231)
                      +-.|.+.++++.+|.-...+.+|+.+|.-+.-+.+|....+.+....+.                         +  ..+
T Consensus      1120 ~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r 1199 (1516)
T KOG1832|consen 1120 SHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFR 1199 (1516)
T ss_pred             eccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHH
Confidence            3468999999999999999999999999999999987666554321110                         1  112


Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEE-----eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      ++.+-. ..+.+||++++..+.++-     ....-+.+.|+|+...++-  +  -.+||.+..+.++.++--.....-. 
T Consensus      1200 ~~gt~~-d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--d--GvLWDvR~~~aIh~FD~ft~~~~G~- 1273 (1516)
T KOG1832|consen 1200 ALGTEA-DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--D--GVLWDVRIPEAIHRFDQFTDYGGGG- 1273 (1516)
T ss_pred             Hhcccc-cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--C--ceeeeeccHHHHhhhhhheeccccc-
Confidence            232222 457789999887765521     1223466778998876542  2  2478887766655543211111112 


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL  179 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~  179 (231)
                       ++|.+..++.-++     +||+++-.++++.+.-.  =+.+.|+..|..
T Consensus      1274 -FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1274 -FHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTGDV 1315 (1516)
T ss_pred             -ccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCccc
Confidence             3677776666553     78888777665543211  234566666653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.51  E-value=0.21  Score=43.18  Aligned_cols=134  Identities=12%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCc------------ceEEeee
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL------------ELIKEHK  119 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~------------~~~~~~~  119 (231)
                      |..|...+. +.|.+||..+++.++.+.... +..|.|++++..++......+.+++-...            .....++
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEE
Confidence            445555554 489999999999998887654 79999999999888776666666553322            1112222


Q ss_pred             ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ....+....|  ..+  .++..... +++-+--.....+.++.   .++.=+.+.|..+.+....+|+.|..+.+.
T Consensus       195 ~~~~IkSg~W--~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  195 ISERIKSGCW--VED--CFIYTTSN-HLKYLVNGETGIIAHLD---KPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             E-S--SEEEE--ETT--EEEEE-TT-EEEEEETTEEEEEEE-S---S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             ecceeEEEEE--EcC--EEEEEcCC-eEEEEEcCCcceEEEcC---CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            2334444445  222  44444444 55543211222234432   466777888877778778888888887663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.35  E-value=0.39  Score=38.27  Aligned_cols=122  Identities=15%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             EEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEeeecc---ce---eEEEEE
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKEHKVP---AQ---VHSASL  129 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~---~~---~~~~~~  129 (231)
                      -.=..++..+||..+.+.+.++.....-..++  .++..++++.+ ..+.++|..+.+..+.....   .+   .+.+.+
T Consensus       105 LTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred             EEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence            33456788899999988888887766555555  67777888765 68999999888777665432   11   222222


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeecc------------CC---CCCeeEEEEcCCCC-EEEEe
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK------------GH---FGPIHCVKFSPDGE-LYASG  183 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~------------~h---~~~V~~v~~spd~~-~laS~  183 (231)
                         -++.+.|--=..-.|...|..+|+....+.            .+   .+-.+.+||.|... +++||
T Consensus       183 ---i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  183 ---INGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ---ETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             ---EcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence               144444444445566677777776443221            01   24578999998754 55655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.33  E-value=0.016  Score=32.31  Aligned_cols=31  Identities=32%  Similarity=0.674  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCC
Q psy6442         166 GPIHCVKFSPDG---ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       166 ~~V~~v~~spd~---~~laS~s~d~~v~iwd~~~  196 (231)
                      ++|++++|||.+   .+|+-+..-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999864   4899999999999999985

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.26  E-value=0.63  Score=40.82  Aligned_cols=150  Identities=11%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-----c----eeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-----P----NSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA  122 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-----~----~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  122 (231)
                      +.+++.++.|+.+.-.|..+++.+-.......     .    ..+....++..++...++.+.-+|..+.+.+..+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            56677888899999999999887765543221     0    01111111444444557788889999888887765543


Q ss_pred             e------eEEEEEEecCCCCEEEEec---------CCCeEEEEeCCCcceeeeccCCCC--------------------C
Q psy6442         123 Q------VHSASLLLNSERPIFVCGG---------EDLKMYKFDYSTGAEIESFKGHFG--------------------P  167 (231)
Q Consensus       123 ~------~~~~~~~~~~~~~~~~~g~---------~d~~i~~~d~~~~~~~~~~~~h~~--------------------~  167 (231)
                      .      +.. ..... + ..++.++         .++.++.+|..+|+.+..++....                    .
T Consensus       141 ~~~~~~~i~s-sP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         141 QVPPGYTMTG-APTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CcCcceEecC-CCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            2      111 00111 1 2333443         357889999999988776543211                    1


Q ss_pred             e-eEEEEcCCCCEEEEeeCCC------------------cEEEEeCCCCCeeeeee
Q psy6442         168 I-HCVKFSPDGELYASGSEDG------------------TLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       168 V-~~v~~spd~~~laS~s~d~------------------~v~iwd~~~~~~~~~~~  204 (231)
                      | .+.++.+.+.++..++.++                  .|.-.|..+|+.....+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            1 1345555556666666554                  79999999999764433

The alignment model contains an 8-bladed beta-propeller.

>KOG4649|consensus

Probab=96.25  E-value=0.37  Score=38.20  Aligned_cols=99  Identities=21%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442          99 THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus        99 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      ++.+.+.-.|..+++...+......+....+.   -+.+++.|...+.++..+.++|+.+..+..-..-=......+++.
T Consensus        30 SHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g  106 (354)
T KOG4649|consen   30 SHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG  106 (354)
T ss_pred             cCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc
Confidence            45567777788888777766555544443332   245688999999999999999987776653222223345778899


Q ss_pred             EEEEeeCCCcEEEEeCCCCCee
Q psy6442         179 LYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ++-.++.|++...-|..+..-+
T Consensus       107 lIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen  107 LIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             eEEEecCCCcEEEecccccceE
Confidence            9999999999999998876643

>KOG1832|consensus

Probab=96.23  E-value=0.0087  Score=54.47  Aligned_cols=160  Identities=16%  Similarity=0.209  Sum_probs=102.1

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG   93 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~   93 (231)
                      -+..+++..|+....+++|+.+.               ..|+.|+.-|.||++++.+|....... ++..++.+..+.+|
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~---------------~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT---------------NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC---------------ceEEeeeccceEEEEEccCccccccccccccccccccccCCc
Confidence            35567788898888899998763               457888999999999999998776654 56788999999999


Q ss_pred             CEEEEEcC--C-eEEEEECCCc-ceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-c---CCC
Q psy6442          94 TTITVTHG--S-CVTFLDANSL-ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-K---GHF  165 (231)
Q Consensus        94 ~~~~~~~~--~-~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~---~h~  165 (231)
                      ...+.+..  . -..+|+.... .....++..   .+..+  +...+..+.|.......+||+.++..+.++ .   +..
T Consensus      1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~vkF--sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFDED---KAVKF--SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             ceeeeeccccCchHHHhccccccCcccccccc---ceeeh--hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence            87665432  2 3467876542 222222221   22223  222333344444455678898887766553 2   222


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       166 ~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ..-+.+.|||+..++.   .||  -+||++..+-
T Consensus      1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA 1259 (1516)
T ss_pred             hhccccccCCCcceEe---eCc--eeeeeccHHH
Confidence            2336778999877664   233  4688776543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.22  E-value=0.22  Score=34.11  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEE-EEe
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSAS-LLL  131 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~  131 (231)
                      ..|+.||.|..||+|+-.  ..+..+.-...+.++...+.+++.+...+++|.+|+..  ..+.+.+....+.++. +..
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~   91 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDI   91 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcC
Confidence            569999999999999754  55666666778888888888888888888999999753  2233333333332222 222


Q ss_pred             cCCC-CEEEEecCCCeE
Q psy6442         132 NSER-PIFVCGGEDLKM  147 (231)
Q Consensus       132 ~~~~-~~~~~g~~d~~i  147 (231)
                      +.++ +.+++|=.+|.|
T Consensus        92 ~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   92 NGDGVPELIVGWSNGKV  108 (111)
T ss_pred             CCCCceEEEEEecCCeE
Confidence            3222 246666666654

>KOG3621|consensus

Probab=96.11  E-value=0.047  Score=48.43  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             EEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce-----eeec
Q psy6442          88 EISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE-----IESF  161 (231)
Q Consensus        88 ~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~-----~~~~  161 (231)
                      +++..+..++++. .+.+.+++.......................++...++|.|+..+.|-++.+..+..     +..+
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            4445555665544 466777776544332222111122223344578888899999999999987755321     1122


Q ss_pred             -cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         162 -KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       162 -~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                       ..|...|++++|++++..+.+|...|.|.+-.+.+
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             24788999999999999999999999998887766

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.05  E-value=0.18  Score=34.54  Aligned_cols=55  Identities=11%  Similarity=0.216  Sum_probs=42.2

Q ss_pred             CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .-|+.|++|..|++|+-.  +.+.++. -.+.|.++.-.+. ..|+.+-.+|+|-+|+-
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            468899999999999743  5556655 3456777777776 56888999999988874

>KOG2395|consensus

Probab=95.84  E-value=0.24  Score=42.90  Aligned_cols=138  Identities=16%  Similarity=0.182  Sum_probs=89.7

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE--------EEEEcCCeEEEEECCCcce-----EEeeec
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT--------ITVTHGSCVTFLDANSLEL-----IKEHKV  120 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~i~~~d~~~~~~-----~~~~~~  120 (231)
                      .|.++..-..++-.|+..|+.+....+...++-+.+.|+...        ++...++.+..||.+-...     .+.+..
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            345566666788889999998888887776777777776542        2233456777888763221     111222


Q ss_pred             cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ..+....|+....+| .++.|+.+|.|++||- .+..-. -++|-..+|..|..+.||..++..+ +..+-|-++
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            222233333333344 5788999999999996 444333 3678889999999999998776544 455666664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=0.84  Score=36.77  Aligned_cols=184  Identities=18%  Similarity=0.270  Sum_probs=90.2

Q ss_pred             eeeeccCCCeEeeeecccccEEE--EEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-ceEEEE-eCCc
Q psy6442           8 MLRQGDTGDWIGTFEGHKGCVWG--VDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-EVQKLE-FGAV   83 (231)
Q Consensus         8 ~~~~~~~g~~i~~l~gH~~~V~~--~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-~~~~~~-~~~~   83 (231)
                      +++|.++++.+.++...++.=+-  =.|++||.+|.....|+..          .-|.|-|||.+.+- .+-.+. ++--
T Consensus        94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~----------~rGViGvYd~r~~fqrvgE~~t~GiG  163 (366)
T COG3490          94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP----------NRGVIGVYDAREGFQRVGEFSTHGIG  163 (366)
T ss_pred             EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC----------CCceEEEEecccccceecccccCCcC
Confidence            46666666666555433332110  1467777666554444421          13567799987431 111121 2345


Q ss_pred             ceeEEEccCCCEEEEEcCC-------------------eEEEEECCCcceEEeeeccceeEEEE---EEecCCCCEEEEe
Q psy6442          84 PNSLEISRDGTTITVTHGS-------------------CVTFLDANSLELIKEHKVPAQVHSAS---LLLNSERPIFVCG  141 (231)
Q Consensus        84 ~~~v~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g  141 (231)
                      +-.+.+.+||+++++.+++                   .+.+.|..+.+.+.++..+......+   +...+++.+...+
T Consensus       164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            6788999999998876543                   12334444555555555552221111   1123333322211


Q ss_pred             cCCC-----eEEEEeCCCcceeeecc-------CCCCCeeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCeee
Q psy6442         142 GEDL-----KMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELYASGSEDGT-LRLWQTNVGKTYG  201 (231)
Q Consensus       142 ~~d~-----~i~~~d~~~~~~~~~~~-------~h~~~V~~v~~spd~~~laS~s~d~~-v~iwd~~~~~~~~  201 (231)
                      -..+     --.+=....+++++-+.       +-...|-+++.+.+..+++-.|.-|+ .-|||..+|....
T Consensus       244 Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         244 QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            1100     00000001111111111       12234667888877666666665554 5799999998764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.57  E-value=0.2  Score=46.03  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEE-EeCCcceeEEEccCCCEEEEEcCCeEEEEEC
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVTHGSCVTFLDA  109 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~  109 (231)
                      .+++||.||.+|.||+||--.......+ .++.++..+..+.||+.+++++...+.+++.
T Consensus       587 ~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  587 EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            5678999999999999994332222222 2467899999999999999999988888774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.55  E-value=1.1  Score=36.64  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             CCCceeeecc-CCCeEeeeecccccEEEEEECCCCceeEeccc--cccccCC-CEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           4 DGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAA--DFQAKNN-TRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         4 d~~~~~~~~~-~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~--d~~~~~~-~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      .|.|-+||.. +-+.+..|..|.--=+.+.+.|||..|+-+-.  .-.+..+ ..|=-..++-++-.-|..+++.+....
T Consensus        76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            3556677776 45566777766544466778888865554422  2222221 234444556677778888888877755


Q ss_pred             eC-----CcceeEEEccCCCEEEEEcC-C-------eEEEEECCCcceEEeeecc------ceeEEEEEEecCCCCEEEE
Q psy6442          80 FG-----AVPNSLEISRDGTTITVTHG-S-------CVTFLDANSLELIKEHKVP------AQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        80 ~~-----~~~~~v~~~~~~~~~~~~~~-~-------~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  140 (231)
                      +.     -++..+++.+++..++.... +       -+.+++...  .+.....+      ..-..-++..++++..++.
T Consensus       156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence            52     36888999999887765321 1       223333222  12222211      1122334445778877766


Q ss_pred             ecCC-CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC
Q psy6442         141 GGED-LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE  185 (231)
Q Consensus       141 g~~d-~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~  185 (231)
                      .+.. +++.+||..++..+....  -..+..++-.+++ +++|.+.
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCC
Confidence            6654 578899999998876643  2356777777777 5665554

>KOG4649|consensus

Probab=95.52  E-value=0.96  Score=35.96  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEec
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLN  132 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  132 (231)
                      +.++.+|-.+.++--|..++...-...++..+.+-+.--.+..++....+.+.+.+..+++....+.....+.. ....+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d  102 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCD  102 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEc
Confidence            45666777777777777777665544444444433333222233334567888888888877666544322221 11237


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeecc
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFK  162 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~  162 (231)
                      +++.++..|+.|++.+..|.++...+...+
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEecc
Confidence            788899999999999999998877766543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.51  E-value=0.18  Score=37.64  Aligned_cols=40  Identities=25%  Similarity=0.455  Sum_probs=31.8

Q ss_pred             CCeeEEEEcCCC------CEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         166 GPIHCVKFSPDG------ELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       166 ~~V~~v~~spd~------~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      ..|.+++|||.|      -+||....++.|.||...... ...|..+
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-~~~W~~v  131 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-QGEWNRV  131 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-cccEeee
Confidence            378999999964      389999999999999987654 5566544

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1645|consensus

Probab=95.38  E-value=0.096  Score=43.65  Aligned_cols=129  Identities=16%  Similarity=0.127  Sum_probs=82.6

Q ss_pred             ccccEEEEEECCCCceeEeccc-ccccc---CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC--EE
Q psy6442          24 HKGCVWGVDINKDASKAASGAA-DFQAK---NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT--TI   96 (231)
Q Consensus        24 H~~~V~~~~~~~~~~~~~s~~~-d~~~~---~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~   96 (231)
                      |...-+++.+++....+..+.. +..+.   .++.+..|-  | +++.+..+.+....+. ....+.+++++|...  ..
T Consensus       134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGv--G-v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~  210 (463)
T KOG1645|consen  134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGV--G-VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLG  210 (463)
T ss_pred             hcccceeeeecCCceEEecccccceeeeeccchhhcCCcc--c-eEEeccCCcchhhcccccchhhhhhccCccccceee
Confidence            5566667776665544433211 10000   111122221  2 6666666555544333 235688999999877  34


Q ss_pred             EEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442          97 TVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus        97 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      ..+.+..|.++|+.+..+...+..+..+.+++|..+ +...+..|...|.|++||++..+
T Consensus       211 ~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDld-e~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  211 LASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLD-ERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeccCceEEEEecccceeeeheeccCCceeeeeccC-CcceeEEeccCceEEEEEccCCC
Confidence            456788999999999888888888777777777544 35567788889999999997654

>KOG2444|consensus

Probab=95.25  E-value=0.087  Score=40.68  Aligned_cols=140  Identities=13%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCccee-EEEccCCCEEEE-EcCCeEEEEECCCcceEEe-eeccceeEEEEEEe
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNS-LEISRDGTTITV-THGSCVTFLDANSLELIKE-HKVPAQVHSASLLL  131 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~  131 (231)
                      |...|.|+.|+-++++.-+.-  ......+.. .....-+..+++ +.++.+..|...-...... .........+.+..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhh--hhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            344567888888877643211  010111111 111122233444 4567888777652211110 11111111111211


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCC-CCeeEEEEcCCCCEEEEe--eCCCcEEEEeCCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF-GPIHCVKFSPDGELYASG--SEDGTLRLWQTNV  196 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~-~~V~~v~~spd~~~laS~--s~d~~v~iwd~~~  196 (231)
                      ..++.+..++.++++|+.|+...++.+...-.|. .++..+..+..+++++++  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2334467788999999999998877776666677 666666666666777777  7777777777643

>KOG3621|consensus

Probab=94.88  E-value=0.29  Score=43.67  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             CcCCCceeeeccCCCe-EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           2 CVDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~-i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +.-|-|+|++-.+|+. +.+..+-.+.+.....+++.               ..+|.++..|.|-++.+..+.....+. 
T Consensus        52 sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---------------~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   52 SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---------------YLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             cccceEEEEecCchhhhcccccCccceEEEEEecchh---------------HhhhhhcCCceEEeehhhccCCCcceee
Confidence            3456777777666653 33333445555556666643               335566666777777765543221111 


Q ss_pred             ------eCCcceeEEEccCCCEEEEEcC-CeEEEEECCC
Q psy6442          80 ------FGAVPNSLEISRDGTTITVTHG-SCVTFLDANS  111 (231)
Q Consensus        80 ------~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~  111 (231)
                            ++..|++++|+++++.++.+++ |.+....+..
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                  2457899999999999998864 6676655544

>KOG2395|consensus

Probab=94.85  E-value=0.29  Score=42.50  Aligned_cols=58  Identities=17%  Similarity=0.346  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEE-EE-eCCcceeEEEccCCCEEEEEcCCeEEEEEC
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQK-LE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  109 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~  109 (231)
                      .+..++.||.+|.||+||- .+....+ ++ ++..+..+..+.+|..++++++..+.+.+.
T Consensus       440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            4578999999999999997 3333222 22 567899999999999999999988887764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.81  E-value=1.9  Score=38.88  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             cceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-----
Q psy6442          83 VPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST-----  154 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-----  154 (231)
                      .+.-+..+.-++..++.. ...+.+||........+...  ..++..+.|...|+++.+++-+....|.++-...     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            344455555555555544 45899999987765444333  5567777888889999988888898888874421     


Q ss_pred             -c---ceeee--ccCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         155 -G---AEIES--FKGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       155 -~---~~~~~--~~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                       +   ..+..  +..|+ .+|.+..|-++|.+++.++  +.+.|++-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             1   12222  23444 5899999999997766543  55888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.81  E-value=0.17  Score=41.03  Aligned_cols=66  Identities=17%  Similarity=0.352  Sum_probs=44.5

Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcc---eeee-----ccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGA---EIES-----FKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~---~~~~-----~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~  195 (231)
                      +.++.+...+++ .+|.+|-+|++.-..   .+-.     ++.-+.-|++..|+|.. +.+.-.+..|+|+|-|++
T Consensus       178 iS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         178 ISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            344666666665 468899999875321   1212     22234568899999974 567777789999999987

>KOG2280|consensus

Probab=94.69  E-value=1.2  Score=40.37  Aligned_cols=181  Identities=11%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             ceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE-EE--E-eCC
Q psy6442           7 PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ-KL--E-FGA   82 (231)
Q Consensus         7 ~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~-~~--~-~~~   82 (231)
                      +++++ .+|+++.++.-..+.+.++.|+.+                ..|+....||++.+|++....... .+  + ..+
T Consensus        66 I~If~-~sG~lL~~~~w~~~~lI~mgWs~~----------------eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~  128 (829)
T KOG2280|consen   66 IRIFN-ISGQLLGRILWKHGELIGMGWSDD----------------EELICVQKDGTVHVYGLLGEFIESNSVGFESQMS  128 (829)
T ss_pred             EEEEe-ccccchHHHHhcCCCeeeecccCC----------------ceEEEEeccceEEEeecchhhhcccccccccccC
Confidence            45566 457777775544457777888764                457788899999999985432211 12  1 122


Q ss_pred             cceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee-ccc-eeEEEEEEecCCCC--EEEEe-cCCCeEEEEeCCCc-c
Q psy6442          83 VPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK-VPA-QVHSASLLLNSERP--IFVCG-GEDLKMYKFDYSTG-A  156 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~g-~~d~~i~~~d~~~~-~  156 (231)
                      .+..+.+..+|-.+.. .++.+..........+++.+ .|. .....+|...+.+.  .++.. ....-..++...+. .
T Consensus       129 ~I~ec~~f~~GVavlt-~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~  207 (829)
T KOG2280|consen  129 DIVECRFFHNGVAVLT-VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV  207 (829)
T ss_pred             ceeEEEEecCceEEEe-cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc
Confidence            3444444445544333 33333332221111111111 111 01112232222211  11111 10000011111111 1


Q ss_pred             eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       157 ~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..+.+..-...+..+..||+.++||--..+|.|.+-.....+....+++
T Consensus       208 q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  208 QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            1222322235678899999999999999999999888877766655543

>KOG2079|consensus

Probab=94.63  E-value=0.062  Score=50.01  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=52.0

Q ss_pred             EEEEecCCCeEEEEeCCCcce-eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         137 IFVCGGEDLKMYKFDYSTGAE-IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~~~~-~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .++.|+..+.+..+|+...-. .+.=+.-.++|.+++|+.+|.+++.|-.+|.|.+||...+++.+..+.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            366777778888777644211 122222357999999999999999999999999999999998766543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.61  E-value=0.35  Score=40.47  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=55.8

Q ss_pred             ccCCCEEEEE----------cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee
Q psy6442          90 SRDGTTITVT----------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE  159 (231)
Q Consensus        90 ~~~~~~~~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~  159 (231)
                      |||++.+++.          ..+...++|+.+.+...............+  +|++..++... +..|++.+..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            4666665542          224567788887655443333223333334  78888888764 6789999887664432


Q ss_pred             e-ccCC----------------CCCeeEEEEcCCCCEEEEeeC-CCcEEEEe
Q psy6442         160 S-FKGH----------------FGPIHCVKFSPDGELYASGSE-DGTLRLWQ  193 (231)
Q Consensus       160 ~-~~~h----------------~~~V~~v~~spd~~~laS~s~-d~~v~iwd  193 (231)
                      . ..|-                -+.-..+.||||+++||.... +..|+.+.
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP  129 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence            1 2220                112356889999999887753 44455443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640|consensus

Probab=94.59  E-value=0.26  Score=43.42  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          81 GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      +..+.-+.|+|.-..++. ...+.+.+...+ .+.+.++..|. ++. .+..+.|+|.+++.|-.||+|++.|..++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc-eeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            445677788887666554 456667766665 55566665443 343 34445999999999999999999999998877


Q ss_pred             eecc-CCCCCeeEEEEcC
Q psy6442         159 ESFK-GHFGPIHCVKFSP  175 (231)
Q Consensus       159 ~~~~-~h~~~V~~v~~sp  175 (231)
                      +.+. .-..+|.++-|+|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            6632 2345677777764

>KOG2114|consensus

Probab=94.51  E-value=3.9  Score=37.77  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCc-ceeEEEccCCCEEE-EEcC----C-eEEEEECCC------cceEEe
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAV-PNSLEISRDGTTIT-VTHG----S-CVTFLDANS------LELIKE  117 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~-~~~~----~-~i~~~d~~~------~~~~~~  117 (231)
                      +..++-|+.||.|-+.+-+- +..+.++. +.. +..+........++ ++.+    . .+++|++..      ..++..
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~  113 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE  113 (933)
T ss_pred             CceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence            55689999999988886432 22122221 112 22332223323332 2222    1 688998653      233422


Q ss_pred             ee-----cc---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCC----CcceeeeccCCCCCeeEEEEcCCCCEEEEeeC
Q psy6442         118 HK-----VP---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYS----TGAEIESFKGHFGPIHCVKFSPDGELYASGSE  185 (231)
Q Consensus       118 ~~-----~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~----~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~  185 (231)
                      ++     .|   .+...+  ..+.+-..+++|-.+|.|..+.-.    .+........-..||+.+++..++..++-+..
T Consensus       114 ~ri~~~~np~~~~p~s~l--~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  114 HRIFTIKNPTNPSPASSL--AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             eeeeccCCCCCCCcceEE--EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence            21     12   223333  335567788999999999887542    12222222224579999999999876333444


Q ss_pred             CCcEEEEeCCCCCe--eeeeeccCCcccCCCCCCcc
Q psy6442         186 DGTLRLWQTNVGKT--YGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       186 d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~  219 (231)
                      ...|.+|.+. |++  ..+.......+.|....+.+
T Consensus       192 t~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t  226 (933)
T KOG2114|consen  192 TEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGT  226 (933)
T ss_pred             cceeEEEEec-CCCcceeeeccCCccceeeecCCCC
Confidence            5669999987 554  44466555555555544443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.14  E-value=2.4  Score=33.82  Aligned_cols=142  Identities=11%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             EEEEeCCCCEEEEeCCCC-----CceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-------
Q psy6442          55 LISCAEDKTVRLWDVSAS-----AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-------  122 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------  122 (231)
                      ...+...++|.+|.....     +..+.+..+..+..++|.  +..++++..+...+.|..+...........       
T Consensus       107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~  184 (275)
T PF00780_consen  107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKS  184 (275)
T ss_pred             EEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhh
Confidence            334445668888776542     456677788899999999  456666656667777776544432221111       


Q ss_pred             ---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee--eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         123 ---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       123 ---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~--~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                         .........-+++.++++- .+..++ .|. .|+..+  .++ ....+.++++..  .+|..... +.|.||++.++
T Consensus       185 ~~~~~~~~~~~~~~~~e~Ll~~-~~~g~f-v~~-~G~~~r~~~i~-W~~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~  257 (275)
T PF00780_consen  185 RNSSSKPLGIFQLSDNEFLLCY-DNIGVF-VNK-NGEPSRKSTIQ-WSSAPQSVAYSS--PYLIAFSS-NSIEVRSLETG  257 (275)
T ss_pred             cccCCCceEEEEeCCceEEEEe-cceEEE-EcC-CCCcCcccEEE-cCCchhEEEEEC--CEEEEECC-CEEEEEECcCC
Confidence               0111111112334444442 222222 222 333222  222 334566666633  46766665 55999999999


Q ss_pred             Ceeeeeec
Q psy6442         198 KTYGLWKC  205 (231)
Q Consensus       198 ~~~~~~~~  205 (231)
                      +.+|....
T Consensus       258 ~lvQ~i~~  265 (275)
T PF00780_consen  258 ELVQTIPL  265 (275)
T ss_pred             cEEEEEEC
Confidence            98877653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.07  E-value=2.5  Score=37.45  Aligned_cols=113  Identities=17%  Similarity=0.279  Sum_probs=62.4

Q ss_pred             CcceeEEEccCC-----CEEEEEcCCeEEEEECCCc-----ceE--E--eeeccceeEEEEEEecCCCCEEEE-ecCCCe
Q psy6442          82 AVPNSLEISRDG-----TTITVTHGSCVTFLDANSL-----ELI--K--EHKVPAQVHSASLLLNSERPIFVC-GGEDLK  146 (231)
Q Consensus        82 ~~~~~v~~~~~~-----~~~~~~~~~~i~~~d~~~~-----~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~  146 (231)
                      ..+..++|.|-+     ..+++.+...+.+|.+...     +.+  +  ++..+.++..-.+.++|...+++. ...|..
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            357788888753     3567788899999986521     111  1  122233322222234676665543 344544


Q ss_pred             EE-EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC-CcEEEEeCC
Q psy6442         147 MY-KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED-GTLRLWQTN  195 (231)
Q Consensus       147 i~-~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d-~~v~iwd~~  195 (231)
                      |. -....+......+. -.+-|+|.+|.+||+.|+.|-.. =.-.|||-.
T Consensus       137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            32 12222222223343 45789999999999877666432 223689853

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.94  E-value=3.2  Score=34.47  Aligned_cols=154  Identities=19%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             CCCEEEEEeCCCCEEEEeCC-CCCceEEE-E-eC---Ccc-eeEEEcc-CCCEEEEEcCCeEEEEECCCcceE--Eeeec
Q psy6442          51 NNTRLISCAEDKTVRLWDVS-ASAEVQKL-E-FG---AVP-NSLEISR-DGTTITVTHGSCVTFLDANSLELI--KEHKV  120 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~-~~~~~~~~-~-~~---~~~-~~v~~~~-~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~  120 (231)
                      .+..+.+-+.||++--..+. .|+...+. . +.   .++ ..-++.. ++..++++..+.+.-.|.......  .....
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            34568888889999888876 44443222 1 11   112 2223333 345667788888888776554321  11111


Q ss_pred             -----------cceeEEEEEEecC-CCCEEEEec-------CC--CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-
Q psy6442         121 -----------PAQVHSASLLLNS-ERPIFVCGG-------ED--LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-  178 (231)
Q Consensus       121 -----------~~~~~~~~~~~~~-~~~~~~~g~-------~d--~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-  178 (231)
                                 |.....+.+  ++ .+++.+.-.       .+  ..||.+|+.+++.+..++. ..++.+|+.+.+.. 
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKP  302 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-
T ss_pred             cCccccccCcCCcceeeeee--ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCc
Confidence                       111111222  32 233333211       11  3699999999999988763 24688999999865 


Q ss_pred             EEEE-eeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442         179 LYAS-GSEDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       179 ~laS-~s~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                      +|.+ ...++.+.|||..+||.+...+.+.
T Consensus       303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             EEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            5544 4568999999999999987776543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.93  E-value=3.4  Score=34.88  Aligned_cols=175  Identities=19%  Similarity=0.217  Sum_probs=82.6

Q ss_pred             eeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCE-EEEEeCCCC--EEEEeCCCCCceEEEEeC-Ccce
Q psy6442          10 RQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTR-LISCAEDKT--VRLWDVSASAEVQKLEFG-AVPN   85 (231)
Q Consensus        10 ~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~-l~s~s~D~t--i~iwd~~~~~~~~~~~~~-~~~~   85 (231)
                      -|..||--+-.|..+.+.-..+-|...+-          ..++.+ |..+..|+.  +.+.|+.+++..+..... ....
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~f----------t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~   84 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCF----------TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF   84 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-----------TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCc----------CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc
Confidence            35567776666765544434343322110          112333 445555654  555688887766555543 2344


Q ss_pred             eEEEccCCCEE-EEEcCCeEEEEECCCcceEEeeeccceeE-EEEEEecCCCCEEEEe----------------------
Q psy6442          86 SLEISRDGTTI-TVTHGSCVTFLDANSLELIKEHKVPAQVH-SASLLLNSERPIFVCG----------------------  141 (231)
Q Consensus        86 ~v~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g----------------------  141 (231)
                      ...++|+++.+ ++..+..+...|+.+.+....+..+.... ...+..+.++..++..                      
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            66778888876 45666788889999887766666654333 2344446666654321                      


Q ss_pred             cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC----CC-cEEEEeCC
Q psy6442         142 GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE----DG-TLRLWQTN  195 (231)
Q Consensus       142 ~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~----d~-~v~iwd~~  195 (231)
                      ....+|...|+.+|+....+. -..-+..+.|||...-+++-+.    +. .-|||-+.
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence            012456667887776543333 3345677899997655555542    33 24778653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.40  E-value=3.8  Score=33.68  Aligned_cols=183  Identities=18%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             CCceeeeccCC-----C--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-ceE
Q psy6442           5 GKPMLRQGDTG-----D--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-EVQ   76 (231)
Q Consensus         5 ~~~~~~~~~~g-----~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-~~~   76 (231)
                      |.+++++....     +  +++. ....++|.++.--                 +.+|+.+ ..+.|.+|++...+ ...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-----------------~~~lv~~-~g~~l~v~~l~~~~~l~~  122 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-----------------NGRLVVA-VGNKLYVYDLDNSKTLLK  122 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-----------------TTEEEEE-ETTEEEEEEEETTSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-----------------CCEEEEe-ecCEEEEEEccCcccchh
Confidence            66777777663     2  2222 3457788887533                 2233333 35889999998877 444


Q ss_pred             EEEeCCcceeEEEccCCCEEEEEc-CCeEEE--EECCCcceEEeee--ccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          77 KLEFGAVPNSLEISRDGTTITVTH-GSCVTF--LDANSLELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~--~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                      .-.+......++...-+..+++++ ...+.+  |+..........+  .+..+.++.+..+.  ..++.+..++.++++.
T Consensus       123 ~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~  200 (321)
T PF03178_consen  123 KAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLR  200 (321)
T ss_dssp             EEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEE
T ss_pred             hheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEE
Confidence            433444334444444455776664 344444  5653333322222  23344444443233  4788889999988876


Q ss_pred             CCC-------cc-eee-eccC-CCCCeeEE---EEcCC--C------CEEEEeeCCCcEE-EEeCCCCCeeeeeeccCC
Q psy6442         152 YST-------GA-EIE-SFKG-HFGPIHCV---KFSPD--G------ELYASGSEDGTLR-LWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       152 ~~~-------~~-~~~-~~~~-h~~~V~~v---~~spd--~------~~laS~s~d~~v~-iwd~~~~~~~~~~~~~~~  208 (231)
                      ...       +. .+. ...- ....|+++   ++.|.  +      ..++-++.+|.|- |--+-..+.+..++.++.
T Consensus       201 ~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~  279 (321)
T PF03178_consen  201 YNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQN  279 (321)
T ss_dssp             E-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHH
T ss_pred             ECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEecCCHHHHHHHHHHHH
Confidence            542       11 221 1111 23567777   55552  2      2477788889887 433234443333333333

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.24  E-value=4  Score=33.52  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=83.9

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec---c---ceeEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV---P---AQVHSA  127 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~---~~~~~~  127 (231)
                      .+.+--..+.|.-|+..+++. ..+..+..+.+......+..++++.. .+.+++......+..+..   .   ...+..
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~  116 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG  116 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc-ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence            345555567777788775543 33444444444443333333333322 233444333332121111   1   111122


Q ss_pred             EEEecCCCCEEEEecC-----------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCC
Q psy6442         128 SLLLNSERPIFVCGGE-----------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTN  195 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~-----------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~  195 (231)
                      .  ..+++.+.+....           .+.++.++. .+..+..+..|-..-+.|+||||++.| .+=+..+.|.-|++.
T Consensus       117 ~--v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         117 V--VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             e--EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            2  2556665443322           245667765 455555566666677899999999654 444566778777664


Q ss_pred             --CCCeee----eeeccCCcccCCCCCCcccccc
Q psy6442         196 --VGKTYG----LWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       196 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                        .+....    ..-...++.+=-+.+|.+|+.|
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw  227 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW  227 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEE
Confidence              233221    1122245655566667777777

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.14  E-value=0.49  Score=27.06  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy6442         120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      .+.++....+  +|...++|.+..++.|.++.+ +++
T Consensus        10 l~~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSW--CPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEE--CCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3444554444  899999999999999999987 444

>KOG1897|consensus

Probab=92.95  E-value=5.1  Score=37.71  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             EEEEeCCCCCceEEEEeCC-----cceeEEEccC-CCEEEEE-----------cCCeEEEEECCC---cceEEeeeccce
Q psy6442          64 VRLWDVSASAEVQKLEFGA-----VPNSLEISRD-GTTITVT-----------HGSCVTFLDANS---LELIKEHKVPAQ  123 (231)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~-~~~~~~~-----------~~~~i~~~d~~~---~~~~~~~~~~~~  123 (231)
                      ++++|-.+.+.+...++..     .+.++.+..| +..++++           ..|.|.++....   .+.+++......
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            6677766665555444432     3455557666 3444432           124555554333   223333333333


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC--CCCeee
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN--VGKTYG  201 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~--~~~~~~  201 (231)
                      +.++.   --+++++|.-  ...+++|++.+.+.++.-..|..++..+.+.-.|..++.|.--+++.+-..+  .|....
T Consensus       832 v~aL~---~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  832 VYALV---EFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             eeehh---hhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            33322   2355555544  4556666666666777767888999999999999999999999988876554  455777


Q ss_pred             eeeccCCcccCCCCCCccccccc
Q psy6442         202 LWKCIEGGLNNSLGLDSSGHLNN  224 (231)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~  224 (231)
                      .-+..++.|-.++.+-.+..+++
T Consensus       907 vArD~~p~Wmtaveil~~d~ylg  929 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEILDDDTYLG  929 (1096)
T ss_pred             eehhhCccceeeEEEecCceEEe
Confidence            78888999888887777665543

>PHA02713 hypothetical protein; Provisional

Probab=92.89  E-value=2  Score=38.42  Aligned_cols=73  Identities=12%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             CCCEEEEecCC------CeEEEEeCCC-c--ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCeeee
Q psy6442         134 ERPIFVCGGED------LKMYKFDYST-G--AEIESFKGHFGPIHCVKFSPDGELYASGSEDG--TLRLWQTNVGKTYGL  202 (231)
Q Consensus       134 ~~~~~~~g~~d------~~i~~~d~~~-~--~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~--~v~iwd~~~~~~~~~  202 (231)
                      ++.+.+.|+.+      ..+..||..+ .  ..+..++........+.+  ++.+.+.|+.|+  ++-.||..+.    .
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~----~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY----E  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc----c
Confidence            45566666643      2467888876 3  233444433322222233  678899999888  6777887664    6


Q ss_pred             eeccCCcccC
Q psy6442         203 WKCIEGGLNN  212 (231)
Q Consensus       203 ~~~~~~~~~~  212 (231)
                      |+.+.+.-+|
T Consensus       537 W~~~~~~~~~  546 (557)
T PHA02713        537 WNHICHQHSN  546 (557)
T ss_pred             ccchhhhcCC
Confidence            8776666544

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.56  E-value=7.7  Score=35.02  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=55.4

Q ss_pred             CCcceeEEEccCCCEEEEE-cCCeE-EEEECCCcceEEee---------eccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          81 GAVPNSLEISRDGTTITVT-HGSCV-TFLDANSLELIKEH---------KVPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~~~~i-~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ......-.|+|++..+... ..+.+ ++.+......+...         ..+..+..+.  +++++..++.-. ++++++
T Consensus       396 g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~--wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        396 GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQ--LSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEE--ECCCCCEEEEEE-CCEEEE
Confidence            3345666899997755433 22222 22222111111111         1122344444  488888777654 457766


Q ss_pred             ---EeCCCcc-ee---eec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         150 ---FDYSTGA-EI---ESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       150 ---~d~~~~~-~~---~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                         -....|. .+   ..+ .+-...+.++.|.+++.++ .+..++...+|.+
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence               4433443 11   112 2233446889999999865 4444555556654

>KOG1008|consensus

Probab=92.49  E-value=0.051  Score=47.87  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=85.6

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCce-EEE--EeCCcceeEEEccCCC-EEEEE-----cCCeEEEEECCCc--ceEEee---
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEV-QKL--EFGAVPNSLEISRDGT-TITVT-----HGSCVTFLDANSL--ELIKEH---  118 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~-~~~--~~~~~~~~v~~~~~~~-~~~~~-----~~~~i~~~d~~~~--~~~~~~---  118 (231)
                      -.++.|..+|.|-+-.++...-. ..+  .+..+.++++|.+-+. .++++     .+..+.+||..+.  .+....   
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            34778888899988877654332 111  1234567888887543 44444     2458899998764  111111   


Q ss_pred             e-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEe
Q psy6442         119 K-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd  193 (231)
                      . .......+++  ..+.+++++|.....+.++|++..... ...-.+..+..+...| .+.++++-. |+.|.+||
T Consensus       151 ~~~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  151 SSTLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             cccccCcccccc--ccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence            1 1112234444  478888999999999999998732211 1111233455677888 778998877 89999999

>KOG3617|consensus

Probab=92.28  E-value=5.7  Score=37.00  Aligned_cols=29  Identities=17%  Similarity=0.440  Sum_probs=26.1

Q ss_pred             CCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         165 FGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ...+++++++..+..|+.+...|.+.+|-
T Consensus       303 ge~~~c~cY~~~~~~l~agt~~gnv~~w~  331 (1416)
T KOG3617|consen  303 GEGILCMCYGEKEIRLWAGTKEGNVTIWL  331 (1416)
T ss_pred             CCceEEEEEeccceEEEecccCCcEEEee
Confidence            34689999999999999999999999995

>KOG4499|consensus

Probab=92.09  E-value=2.6  Score=33.15  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             cceeEEEccCCCEEEEEcC--CeEEEEE--CCCcceEEe---eec-------cceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          83 VPNSLEISRDGTTITVTHG--SCVTFLD--ANSLELIKE---HKV-------PAQVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~--~~i~~~d--~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ..+.++|+.+.+.++....  -.+.-||  ..++....+   ++.       +......++  +.++.+.++.-..++|.
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I--D~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI--DTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE--ccCCcEEEEEecCcEEE
Confidence            4567788888887766443  2343355  333322111   111       011111222  56777777777788999


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCC--CCEEEEeeC
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPD--GELYASGSE  185 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd--~~~laS~s~  185 (231)
                      .+|..+|+++.++.-.+..|+|++|--.  .-+.+++..
T Consensus       237 ~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            9999999999988777889999999765  345555553

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.02  E-value=7  Score=33.30  Aligned_cols=190  Identities=15%  Similarity=0.069  Sum_probs=91.7

Q ss_pred             CcCCCceeeeccCCCeEeee-ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l-~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +...++++.+..+|+.+..- ..-..  ..+.|.++++.+.....+...+..    ..+....|+.|.+.+......+-+
T Consensus       147 ~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~----~~~~~~~v~~~~~gt~~~~d~lvf  220 (414)
T PF02897_consen  147 SEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTS----DSGYPRQVYRHKLGTPQSEDELVF  220 (414)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-----CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred             CceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccc----cCCCCcEEEEEECCCChHhCeeEE
Confidence            34456888888888776532 22111  238899887765544332211100    222244588888887655433322


Q ss_pred             --CC--c-ceeEEEccCCCEEEEE--c--C-CeEEEEECCCc----ceEEeeeccceeEEEEEEecCCCCEEEEec---C
Q psy6442          81 --GA--V-PNSLEISRDGTTITVT--H--G-SCVTFLDANSL----ELIKEHKVPAQVHSASLLLNSERPIFVCGG---E  143 (231)
Q Consensus        81 --~~--~-~~~v~~~~~~~~~~~~--~--~-~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~  143 (231)
                        ..  . ...+..++|++.+++.  .  . ..+.+.+....    ...+............+... .+.+.+...   .
T Consensus       221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~  299 (414)
T PF02897_consen  221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAP  299 (414)
T ss_dssp             C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-T
T ss_pred             eecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCC
Confidence              22  2 4578889999987753  1  2 35677777653    22222222221111112112 333333332   3


Q ss_pred             CCeEEEEeCCCcce---eeeccCCCCCeeEEEEcCCC-CEEEEeeCCCc--EEEEeCCCCC
Q psy6442         144 DLKMYKFDYSTGAE---IESFKGHFGPIHCVKFSPDG-ELYASGSEDGT--LRLWQTNVGK  198 (231)
Q Consensus       144 d~~i~~~d~~~~~~---~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~--v~iwd~~~~~  198 (231)
                      .+.|...++.....   ...+..|...+.-..+...+ .++++.-.++.  |+++++..++
T Consensus       300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            46777777765542   22444455533333333433 34555555554  6788988333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008|consensus

Probab=91.98  E-value=0.15  Score=45.05  Aligned_cols=133  Identities=17%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             CCCCEEEEeCCCCC--ceEEEEe----CCcceeEEEccCCCEEEEEcC-CeEEEEECCCc-ceEEeeeccceeEEEEEEe
Q psy6442          60 EDKTVRLWDVSASA--EVQKLEF----GAVPNSLEISRDGTTITVTHG-SCVTFLDANSL-ELIKEHKVPAQVHSASLLL  131 (231)
Q Consensus        60 ~D~ti~iwd~~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~  131 (231)
                      .|..++|||+.++-  +..+..+    .....+++|..+.+.+.++.. ..++++|.+.. .....+... -+....+  
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk-~vqG~tV--  203 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK-YVQGITV--  203 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh-hccccee--
Confidence            36679999998762  2111111    223457888877777766654 47778876521 111111110 0111222  


Q ss_pred             cCCCCEEEEecCCCeEEEEeC-CCc-ceeeeccCCC----CCeeEEEEcCCC-CEEEEeeC-CCcEEEEeCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDY-STG-AEIESFKGHF----GPIHCVKFSPDG-ELYASGSE-DGTLRLWQTN  195 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~-~~~-~~~~~~~~h~----~~V~~v~~spd~-~~laS~s~-d~~v~iwd~~  195 (231)
                      +|-..--.+...|+.|-+||. ..- .++..+...+    ..+..++|.|.. .++++.+. .++|+++++.
T Consensus       204 dp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  204 DPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            442222334455999999994 222 1222222222    248999999964 36777775 4668999974

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.94  E-value=7.2  Score=33.24  Aligned_cols=112  Identities=17%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             EEEECCCCceeEeccccccccCCCEEEEEeCCC----CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-c----
Q psy6442          30 GVDINKDASKAASGAADFQAKNNTRLISCAEDK----TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H----  100 (231)
Q Consensus        30 ~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~----ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~----  100 (231)
                      .+.++|++++++              ++.+..|    ++++.|+.+++.+...-.......+.|.+++..++.. .    
T Consensus       128 ~~~~Spdg~~la--------------~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  128 GFSVSPDGKRLA--------------YSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEETTTSSEEE--------------EEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTT
T ss_pred             eeeECCCCCEEE--------------EEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCccc
Confidence            456777776653              3434444    4999999999765432112222349999998876543 2    


Q ss_pred             -------CCeEEEEECCCcce--EEeeeccceeE-EEEEEecCCCCEEEEe---cCC-CeEEEEeCCCc
Q psy6442         101 -------GSCVTFLDANSLEL--IKEHKVPAQVH-SASLLLNSERPIFVCG---GED-LKMYKFDYSTG  155 (231)
Q Consensus       101 -------~~~i~~~d~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~g---~~d-~~i~~~d~~~~  155 (231)
                             ...+..+.+.+...  ...+..+.... ...+..+++++.++..   +.+ ..+++.++..+
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                   22356666654332  12232222111 2334446777765532   223 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=91.59  E-value=0.59  Score=37.30  Aligned_cols=46  Identities=11%  Similarity=0.288  Sum_probs=35.7

Q ss_pred             ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc
Q psy6442          24 HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP   84 (231)
Q Consensus        24 H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~   84 (231)
                      -.+.|+.|..+|+|               +.||+...+|.|-+|++.+-+..+......+|
T Consensus       228 ~~d~i~kmSlSPdg---------------~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG---------------SLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCCceEEEEECCCC---------------CEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            46789999999985               45899999999999999877666655544433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.06  E-value=13  Score=34.65  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             CCeEEEEeCCCcceeeeccC-C---------CCCeeEEEEcC-CCC---EEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKG-H---------FGPIHCVKFSP-DGE---LYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~-h---------~~~V~~v~~sp-d~~---~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ...|.-.|.++|+....++. |         ..++ -+.+.. +|+   .++.++++|.+.+.|.++|+.....++
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            34566667777776655432 2         1122 123333 553   789999999999999999998765554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2079|consensus

Probab=90.68  E-value=0.92  Score=42.69  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEE---EEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV---KFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v---~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ..++.+.++  +.++.+++.|-.+|.|.+||...++.++.+.-|..|...+   .+..++..+.++..-|.  +|...
T Consensus       130 ~~~Vtsvaf--n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAF--NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEe--cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            445655555  8899999999999999999999988888887777665544   45556667777777775  66653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.41  E-value=1.8  Score=23.42  Aligned_cols=35  Identities=14%  Similarity=0.347  Sum_probs=25.9

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI   89 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~   89 (231)
                      +++.-.+++|.++|..+++.+..+..+..+..+++
T Consensus         7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         7 YVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            34455578999999988888888777666666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.19  E-value=4.5  Score=34.74  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             cCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEE-EecCCCeEEEEeC-CCcc----eeeec---------
Q psy6442         100 HGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFV-CGGEDLKMYKFDY-STGA----EIESF---------  161 (231)
Q Consensus       100 ~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~g~~d~~i~~~d~-~~~~----~~~~~---------  161 (231)
                      .+.++++||....+.+++++.+.   -...+.++.+|+...-. .+.-..+|+.|-- ..++    .+-++         
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            35689999999999999988752   23456666677766533 3334566776643 2221    11111         


Q ss_pred             --------cCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCC
Q psy6442         162 --------KGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       162 --------~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~  198 (231)
                              ..-..-|+++.+|.|+++| +|+=.+|.||-||+....
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                    1113457999999999866 556689999999987643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.16  E-value=1.8  Score=38.45  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             CCeeEEEEcC----CCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         166 GPIHCVKFSP----DGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       166 ~~V~~v~~sp----d~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      ..+.++++++    +..+|++-+.|+++|+||+.+++....
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3466677777    678999999999999999999998544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.94  E-value=8.5  Score=30.60  Aligned_cols=167  Identities=9%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC--cceeEEEccCCCEEE
Q psy6442          20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTIT   97 (231)
Q Consensus        20 ~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~   97 (231)
                      .+.+-...+..+.|+|+.+.|              ++.....+.|...+. .++.++.+.+..  .+..+++..++.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tL--------------faV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTL--------------FAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEE--------------EEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEE
T ss_pred             ECCCccCCccccEEcCCCCeE--------------EEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEE
Confidence            455656679999999975433              556666777777786 477888887753  567888888887776


Q ss_pred             EEc-CCeEEEEECCCc--c----eEEeeecc------ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC---ccee--e
Q psy6442          98 VTH-GSCVTFLDANSL--E----LIKEHKVP------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYST---GAEI--E  159 (231)
Q Consensus        98 ~~~-~~~i~~~d~~~~--~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~---~~~~--~  159 (231)
                      ... .+.+.+++....  .    ....+...      .....+++  ++.+..+..+-+.....++....   ...+  .
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence            664 466766665221  1    11222221      12333444  66655555555554444443322   1111  1


Q ss_pred             e------ccCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         160 S------FKGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       160 ~------~~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .      .......+.+++++|. +++++-..+.+.|-+.| ..|++...+.
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            1      1123456789999996 56777788888899999 6788765443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.39  E-value=16  Score=33.03  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             EEEEEECCCCceeEeccccccccCCCEE---EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeE
Q psy6442          28 VWGVDINKDASKAASGAADFQAKNNTRL---ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCV  104 (231)
Q Consensus        28 V~~~~~~~~~~~~~s~~~d~~~~~~~~l---~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i  104 (231)
                      ...-.|+|+|..+.+..      ++..+   ......+.+.+.++..+....  .++..+..+.|+|||..+++..++.+
T Consensus       399 ~t~PsWspDG~~lw~v~------dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v  470 (591)
T PRK13616        399 LTRPSWSLDADAVWVVV------DGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKV  470 (591)
T ss_pred             CCCceECCCCCceEEEe------cCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEE
Confidence            56677888876655432      12111   112223445545665554433  45567999999999998776555666


Q ss_pred             EE---EECCCcc-eE-Ee--eeccceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEc
Q psy6442         105 TF---LDANSLE-LI-KE--HKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFS  174 (231)
Q Consensus       105 ~~---~d~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~s  174 (231)
                      .+   .....+. .+ ..  ...........+.+.+++.+++.. +.+..++..++. |.....+.+  ...++.+|+=+
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~  549 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAAS  549 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecC
Confidence            55   3323332 11 00  111111111223335566554332 223446555554 222222233  36778888888


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442         175 PDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       175 pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                      |+ .++ ....++.+.+=  .+...-.-|+++.
T Consensus       550 ~~-~iy-v~~~~g~~~l~--~~~~~~~~W~ev~  578 (591)
T PRK13616        550 PS-TVY-VTDARAVLQLP--NSDSGDQYWREVP  578 (591)
T ss_pred             Cc-eEE-EEcCCceEEec--CCCCCCCCceECc
Confidence            74 333 34445533333  2333334577655

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.26  E-value=13  Score=31.87  Aligned_cols=53  Identities=4%  Similarity=0.090  Sum_probs=30.9

Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDG  177 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~  177 (231)
                      ++..++  .+|+++.+|.-..++.+++....-.+.+..+.-. ..+...+.|.-++
T Consensus       218 ~i~~ia--vSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIA--VSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEE--ECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            344444  4888888888888888888765444444333222 2344555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.12  E-value=12  Score=33.00  Aligned_cols=137  Identities=12%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCC--------EEEEEcCCeEEEEECCCcc-eEEe---eeccc
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT--------TITVTHGSCVTFLDANSLE-LIKE---HKVPA  122 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~i~~~d~~~~~-~~~~---~~~~~  122 (231)
                      +..++.-..+.-.|+..|+.+........+ -|.+.|...        .++...+..+...|.+-.. .+..   .....
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            334455555666677777777666555544 555555432        2222233344445544221 1111   11111


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      +....+. .....-.++.++..|-|++||--.-..-.-+++-..+|-.+..+.+|.++++.+. ..+-+-|+
T Consensus       562 Kn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         562 KNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            1111111 1234456889999999999985222222235667778999999999987665553 45666665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.05  E-value=6.2  Score=30.71  Aligned_cols=74  Identities=11%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeee-------cc-------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIES-------FK-------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-------~~-------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ...+..+.+-..+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+ +|....|+..- 
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L-   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL-   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc-
Confidence            34566677778999999999988764322       22       3556789999999998887776 47789999654 


Q ss_pred             CeeeeeeccCCcc
Q psy6442         198 KTYGLWKCIEGGL  210 (231)
Q Consensus       198 ~~~~~~~~~~~~~  210 (231)
                         ..|..+...+
T Consensus        97 ---~~W~~vsd~w  106 (219)
T PF07569_consen   97 ---GCWIRVSDSW  106 (219)
T ss_pred             ---ceeEEeccch
Confidence               3565555553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.84  E-value=9.1  Score=35.42  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             CCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCC
Q psy6442         164 HFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       164 h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +...|..+.|+|.   +..|+.=..|+++|+||+...+
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            4567889999996   4788888889999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.80  E-value=19  Score=33.61  Aligned_cols=69  Identities=22%  Similarity=0.370  Sum_probs=44.8

Q ss_pred             CEEEEecCCCeEEEEeCCCcceeeeccCCCCCee-------------EEEEcC--CCCEEEEee----------CCCcEE
Q psy6442         136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH-------------CVKFSP--DGELYASGS----------EDGTLR  190 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~-------------~v~~sp--d~~~laS~s----------~d~~v~  190 (231)
                      ..++.+..|+++.-.|.++|+.+..|. ..+.|.             .+.-+|  .+..++.++          .+|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            356778889999999999999887653 222221             111222  133444453          268899


Q ss_pred             EEeCCCCCeeeeeec
Q psy6442         191 LWQTNVGKTYGLWKC  205 (231)
Q Consensus       191 iwd~~~~~~~~~~~~  205 (231)
                      -+|+++|+....|..
T Consensus       340 A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       340 AFDVNTGALVWAWDP  354 (764)
T ss_pred             EEECCCCcEeeEEec
Confidence            999999998777664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.41  E-value=18  Score=32.26  Aligned_cols=152  Identities=15%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc--eeEEEcc---CCCEEEEE-c------CCeEEEEECCCcceEEeee
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISR---DGTTITVT-H------GSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~--~~v~~~~---~~~~~~~~-~------~~~i~~~d~~~~~~~~~~~  119 (231)
                      +.+++.++.|+.+.-.|..+++.+-........  ..+.-+|   ++. +++. .      ++.+.-+|..+++.+..+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            456777888999999999999887655432110  0111111   233 3332 1      3567778887777665433


Q ss_pred             c-ccee---------------------------EE---EEEEecCCCCEEEEecC-----C-----------CeEEEEeC
Q psy6442         120 V-PAQV---------------------------HS---ASLLLNSERPIFVCGGE-----D-----------LKMYKFDY  152 (231)
Q Consensus       120 ~-~~~~---------------------------~~---~~~~~~~~~~~~~~g~~-----d-----------~~i~~~d~  152 (231)
                      . +...                           ..   .....++...++..+..     .           ..|.-.|.
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            2 1100                           00   00122444444433321     1           15667788


Q ss_pred             CCcceeeeccCCCCCe---------eEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         153 STGAEIESFKGHFGPI---------HCVKFSPDGE---LYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       153 ~~~~~~~~~~~h~~~V---------~~v~~spd~~---~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ++|+....|+.....+         .-+.+..+|+   .++.+.++|.+.+.|-.+||.+..|+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~  342 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEP  342 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecccc
Confidence            8888876554321111         1233334665   78899999999999999999864443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.22  E-value=11  Score=29.85  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             cceeEEEccCCCEEEEEc--CC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEE-eCCCcce
Q psy6442          83 VPNSLEISRDGTTITVTH--GS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKF-DYSTGAE  157 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~-d~~~~~~  157 (231)
                      .+.+.++++++..+++..  ++  .+......  ..............-++  ++++.+.+....+...+++ +..++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~--d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSW--DPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccc--cCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            567888999998665432  33  34443322  22211111112222233  5666666665545444444 2223321


Q ss_pred             e-eec--cCCCCCeeEEEEcCCCCEEEEee---CCCcEEEEe
Q psy6442         158 I-ESF--KGHFGPIHCVKFSPDGELYASGS---EDGTLRLWQ  193 (231)
Q Consensus       158 ~-~~~--~~h~~~V~~v~~spd~~~laS~s---~d~~v~iwd  193 (231)
                      . ...  ..-.+.|.++++||||..+|--.   .++.|.|=-
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~  142 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG  142 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence            1 111  11122899999999998776655   346665554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.83  E-value=1.1  Score=38.40  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         163 GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       163 ~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      .....+.++..+|.+++.|....=|.|.|+|+.++..+-.|+++-++-|..+-....++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~  363 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGD  363 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccc
Confidence            34455788999999998888888899999999999999999999998887776665544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.45  E-value=3.2  Score=32.29  Aligned_cols=58  Identities=10%  Similarity=0.159  Sum_probs=35.8

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEE-E--------------eCCcceeEEEccCCCEEEEEcCCeEEEEEC
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKL-E--------------FGAVPNSLEISRDGTTITVTHGSCVTFLDA  109 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~-~--------------~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~  109 (231)
                      +..|.....+|.+++||+..++++..- .              ....+..+.++.+|..++.-.++....|+.
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            456777788999999999988664322 1              113445666666666555444444455543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.19  E-value=2.3  Score=22.94  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=23.6

Q ss_pred             CCCC-EEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         175 PDGE-LYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       175 pd~~-~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      |+++ ++++.-.+++|.++|..+++.......
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5666 455566789999999999888776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.03  E-value=16  Score=30.06  Aligned_cols=152  Identities=17%  Similarity=0.253  Sum_probs=87.7

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCc---eEEEEe-----CCcceeEEEccC--CCEEEEE--cCCeEEEEECCCcceEE--ee
Q psy6442          53 TRLISCAEDKTVRLWDVSASAE---VQKLEF-----GAVPNSLEISRD--GTTITVT--HGSCVTFLDANSLELIK--EH  118 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~---~~~~~~-----~~~~~~v~~~~~--~~~~~~~--~~~~i~~~d~~~~~~~~--~~  118 (231)
                      ..++.+++||||-=|...-...   ...+..     ......+++...  +..|++.  ..++|.++|..-.....  .+
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            4578899999999998643322   111222     123456666643  5567765  35788888865433211  01


Q ss_pred             ec---cc---eeEEEEE---------EecCCCCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCC-----
Q psy6442         119 KV---PA---QVHSASL---------LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPD-----  176 (231)
Q Consensus       119 ~~---~~---~~~~~~~---------~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd-----  176 (231)
                      ..   |.   +.....+         .-+++...=+.|-.-+.|-+||+ .+.+++++.  +.-...+.|+..|-     
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            11   11   1111000         00111111223333467888887 567777663  33456678998773     


Q ss_pred             -CCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         177 -GELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       177 -~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                       +.+|+--=.||+|..||..+|+.+..++.
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecC
Confidence             56787777899999999999987765554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1898|consensus

Probab=87.01  E-value=30  Score=33.25  Aligned_cols=145  Identities=11%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             ceeeeccCCCeEeeeecccc----cEEEEEECCCCce-eEeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEEEe
Q psy6442           7 PMLRQGDTGDWIGTFEGHKG----CVWGVDINKDASK-AASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKLEF   80 (231)
Q Consensus         7 ~~~~~~~~g~~i~~l~gH~~----~V~~~~~~~~~~~-~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~~   80 (231)
                      +++.|..+|+.++.+.-.++    .|..+.|+..... +...+.+.+-+-+...+   .+|.+..|++.. ++.+..++.
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~---~~g~~ytyk~~~~g~~lellh~  931 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSI---SSGFVYTYKFVRNGDKLELLHK  931 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccccccccc---CCCceEEEEEEecCceeeeeec
Confidence            56777777776665442222    3555566544322 22222222211111112   345566665432 332323322


Q ss_pred             CC-cceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCC--eEEEEeCCCcc
Q psy6442          81 GA-VPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDL--KMYKFDYSTGA  156 (231)
Q Consensus        81 ~~-~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~--~i~~~d~~~~~  156 (231)
                      .. +-.-.++.|-+..++++-++.++++|....+.++..+... +.....+  -..+..++.|...-  ....|+....+
T Consensus       932 T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~i--qt~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  932 TEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSI--QTYGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             cCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEE--eecceEEEEeeccceEEEEEEecCCCe
Confidence            11 2234566777778888889999999998888777665543 2222222  22344455554432  34455554444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.74  E-value=13  Score=28.83  Aligned_cols=57  Identities=11%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             eCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEEEEECCCcceEEe
Q psy6442          59 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANSLELIKE  117 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~  117 (231)
                      =.||...++|..+.+++..+..+..-.  ....|+..+.++.+ ..+.+.|..+...+.+
T Consensus       108 w~egvaf~~d~~t~~~lg~~~y~GeGW--gLt~d~~~LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFSYEGEGW--GLTSDDKNLIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             eccceeEEEChHHhhhhcccccCCcce--eeecCCcceEeeCCceEEEecCHHHhhhcce
Confidence            346677778887777766655544333  33456666766655 4666667665544433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.65  E-value=16  Score=29.79  Aligned_cols=116  Identities=10%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEE-CCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce---
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLD-ANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE---  157 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~---  157 (231)
                      ..+.++.|+|+.+.+++..+.--.+.. ...+..++++....--....+..-.+++++++--.+.+++++.+.....   
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~  165 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS  165 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence            347899999999988765543222222 3345666766554211111122245666666656667777776643321   


Q ss_pred             -------eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         158 -------IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       158 -------~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                             +.....-..---.++|.|..+.|..+-+-+-++||.+..+
T Consensus       166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence                   1111111334567999999988888888888998887643

>PHA03098 kelch-like protein; Provisional

Probab=86.10  E-value=22  Score=31.52  Aligned_cols=67  Identities=15%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             CCCEEEEecCC--------CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCC
Q psy6442         134 ERPIFVCGGED--------LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED-----GTLRLWQTNVGK  198 (231)
Q Consensus       134 ~~~~~~~g~~d--------~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d-----~~v~iwd~~~~~  198 (231)
                      ++.+.+.|+..        ..++.||..+.+  .+..+.........+.  -++.+++.|+.+     +.|.+||..+. 
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~-  513 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN-  513 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC-
Confidence            45566666543        237888887653  2222221111111122  266777777654     46888887764 


Q ss_pred             eeeeeecc
Q psy6442         199 TYGLWKCI  206 (231)
Q Consensus       199 ~~~~~~~~  206 (231)
                         .|+.+
T Consensus       514 ---~W~~~  518 (534)
T PHA03098        514 ---TWTLF  518 (534)
T ss_pred             ---EEEec
Confidence               57654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.05  E-value=17  Score=29.59  Aligned_cols=153  Identities=14%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             CceEEEEeCCcceeEEEccCCCE-EEEE-c-CCeEEEEECCCcceEEeeeccceeEEEE-EEecCCCCEEEEecCC----
Q psy6442          73 AEVQKLEFGAVPNSLEISRDGTT-ITVT-H-GSCVTFLDANSLELIKEHKVPAQVHSAS-LLLNSERPIFVCGGED----  144 (231)
Q Consensus        73 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~d----  144 (231)
                      +++..+.++..--.++++|.-.. ++.. . +....++|......+.....+..-+.+- =.+++++.+|...-.|    
T Consensus        59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~  138 (366)
T COG3490          59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN  138 (366)
T ss_pred             ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC
Confidence            44444444455555666665442 2222 1 3344567766655444332221111100 0137888877765333    


Q ss_pred             -CeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE--------eCCCCCe-eeeeeccCCcccCC
Q psy6442         145 -LKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW--------QTNVGKT-YGLWKCIEGGLNNS  213 (231)
Q Consensus       145 -~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw--------d~~~~~~-~~~~~~~~~~~~~~  213 (231)
                       +.|-+||.+.+ +.+.++..|.--.+.+.+.+||+.++.+.  |-|+.-        |+.+-++ .-+.+.+.+.+.-+
T Consensus       139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhh
Confidence             67889998754 45677888888889999999999887664  334443        2223232 23445556666666


Q ss_pred             CCCCccccccceee
Q psy6442         214 LGLDSSGHLNNVHE  227 (231)
Q Consensus       214 ~~~~~~~~~~~~~~  227 (231)
                      .-.-.+.+++-++-
T Consensus       217 h~Lp~~l~~lSiRH  230 (366)
T COG3490         217 HTLPASLRQLSIRH  230 (366)
T ss_pred             ccCchhhhhcceee
Confidence            66655666665553

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.87  E-value=13  Score=32.71  Aligned_cols=60  Identities=15%  Similarity=0.304  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECC
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  110 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~  110 (231)
                      .+.+++.+|.-|-||+||.-.......++ ++..+..+..+.+|..+++.+.+.+.+.|..
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            46789999999999999964332222222 4667888889999999999998888888754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.82  E-value=15  Score=31.62  Aligned_cols=79  Identities=13%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeE-EEEcCC-----------------CCEE-EEeeCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC-VKFSPD-----------------GELY-ASGSEDG  187 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~-v~~spd-----------------~~~l-aS~s~d~  187 (231)
                      .++..+|.+.+++....-|+|.++|+.++..++.++|..++=.. +.....                 ..+| +-+-.-|
T Consensus       311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg  390 (415)
T PF14655_consen  311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG  390 (415)
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence            34455888888888777799999999998887777776543111 110000                 1133 4445688


Q ss_pred             cEEEEeCCCCCeeeeeec
Q psy6442         188 TLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       188 ~v~iwd~~~~~~~~~~~~  205 (231)
                      .|.||.+++|.-+..++.
T Consensus       391 ~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  391 ILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEecCCCCEEEEEEe
Confidence            899999999998887775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.72  E-value=16  Score=29.01  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-CeEE
Q psy6442          27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVT  105 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~i~  105 (231)
                      .+.+.+++++++.++...   ...+...|.....++......           ....+..-+|++++....+..+ ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~---~~~~~~~L~~~~~~~~~~~~~-----------~g~~l~~PS~d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVS---EGDGGRSLYVGPAGGPVRPVL-----------TGGSLTRPSWDPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEE---EcCCCCEEEEEcCCCcceeec-----------cCCccccccccCCCCEEEEEcCCCceE
Confidence            678889999876554221   111223333333333333222           2234455578888776665443 3334


Q ss_pred             EE-ECCCcce-EEeeecc--c-eeEEEEEEecCCCCEEEEec---CCCeEEEEeCC---Cc------ceeeeccCCCCCe
Q psy6442         106 FL-DANSLEL-IKEHKVP--A-QVHSASLLLNSERPIFVCGG---EDLKMYKFDYS---TG------AEIESFKGHFGPI  168 (231)
Q Consensus       106 ~~-d~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~g~---~d~~i~~~d~~---~~------~~~~~~~~h~~~V  168 (231)
                      ++ +...... ......+  . ++..  +..++++..++.-.   .++++++--+.   .+      ..+.........+
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~--l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v  168 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITA--LRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV  168 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEE--EEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence            44 2222111 1111211  1 3444  44588888766543   34666665331   22      1122222334678


Q ss_pred             eEEEEcCCCCEEEEeeCCCc
Q psy6442         169 HCVKFSPDGELYASGSEDGT  188 (231)
Q Consensus       169 ~~v~~spd~~~laS~s~d~~  188 (231)
                      .+++|.+++.+++.+...+.
T Consensus       169 ~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             eeeeecCCCEEEEEeCCCCC
Confidence            99999999987776654443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.56  E-value=6.9  Score=33.58  Aligned_cols=30  Identities=23%  Similarity=0.468  Sum_probs=25.5

Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         167 PIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       167 ~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      .|.+++..+..+.|.+.+.++.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            489999999999999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.74  E-value=21  Score=29.36  Aligned_cols=131  Identities=20%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             CcceeEEEccCCCEEEEEcCCeE-EEEECCCcceEEeee--ccceeEEEEEEecCCCCEEEEecCCCeEEEEeC-CCcce
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCV-TFLDANSLELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDY-STGAE  157 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i-~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~-~~~~~  157 (231)
                      ..+..+..++++.+++++..+.+ .-||.-.. ....+.  ....+..+.+  .+++.+...+ ..+.|+.=+. ...+.
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf--~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGF--SPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE---TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhcee--cCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            45677888999999988876644 45664321 122222  2334444444  6666654443 6777776652 12111


Q ss_pred             ee----eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         158 IE----SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       158 ~~----~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      -.    ....-.-.+.+++|.|++..+|+|+. |++ +.....||.++.=+.+.+--+|...+++
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f  283 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVF  283 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEE
Confidence            11    11112223789999999988887765 433 3455678766655554444445544444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.35  E-value=25  Score=31.56  Aligned_cols=99  Identities=19%  Similarity=0.321  Sum_probs=57.3

Q ss_pred             EEEEEeCCCCEEEEeCCC-----CCce--EEEEeC----CcceeEEEccCCCEEEEEcCCeE-EEEE--CCCcceEEeee
Q psy6442          54 RLISCAEDKTVRLWDVSA-----SAEV--QKLEFG----AVPNSLEISRDGTTITVTHGSCV-TFLD--ANSLELIKEHK  119 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~-----~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~~~~~i-~~~d--~~~~~~~~~~~  119 (231)
                      .|....--+.|-+|.+.-     .+.+  ++.+..    --+-.+.|+|....+.+-....+ .+.+  ..+......++
T Consensus        74 aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~  153 (671)
T PF15390_consen   74 ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK  153 (671)
T ss_pred             ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc
Confidence            455566678899998752     1221  222222    23567889999887766443323 2223  22333344455


Q ss_pred             ccceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCC
Q psy6442         120 VPAQVHSASLLLNSERPIFVCG-GEDLKMYKFDYST  154 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~  154 (231)
                      ....+++.+|  ..+|+.++.+ +....-++||-..
T Consensus       154 ~~G~IhCACW--T~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  154 TSGLIHCACW--TKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CCceEEEEEe--cCcCCEEEEEeCCeEEEEEecCch
Confidence            5667788777  4566655443 4567788998643

>KOG3616|consensus

Probab=84.11  E-value=11  Score=34.73  Aligned_cols=55  Identities=9%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT   95 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   95 (231)
                      ..+.++.-+|.               ++.+++++.||+|++++....+.........+...+.+...|..
T Consensus        15 e~~~aiqshp~---------------~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~   69 (1636)
T KOG3616|consen   15 EFTTAIQSHPG---------------GQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLV   69 (1636)
T ss_pred             ceeeeeeecCC---------------CceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceE
Confidence            34566666665               44589999999999999865544222223334445555554433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.01  E-value=2.8  Score=27.60  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             EEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC
Q psy6442          57 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG  101 (231)
Q Consensus        57 s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  101 (231)
                      .+..+|.+.-||..+++....+.--.-++.|+.++|+..++++.-
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            345567788899998876444443457899999999998887643

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.06  E-value=14  Score=26.28  Aligned_cols=103  Identities=15%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             CEEEEEeCCCCEEEEeCCCC--------CceEEEEeCCcceeEEEcc-----CCCEEEEEcCCeEEEEECCCcceEEeee
Q psy6442          53 TRLISCAEDKTVRLWDVSAS--------AEVQKLEFGAVPNSLEISR-----DGTTITVTHGSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~--------~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~i~~~d~~~~~~~~~~~  119 (231)
                      ..|+.+..-++|.|.+....        ..++.+.+...+.+++-.+     +...++++....+..||......+-..+
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhh
Confidence            35777778888999987633        3456677788888886443     2336777778888889976654443333


Q ss_pred             ccceeEEEEEEe-cC-CCCEEEEecCCCeEEEEeCCCcc
Q psy6442         120 VPAQVHSASLLL-NS-ERPIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus       120 ~~~~~~~~~~~~-~~-~~~~~~~g~~d~~i~~~d~~~~~  156 (231)
                      .+..++++.+-. .. ..++ +..+....|+-||..-.+
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l-~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPL-VIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             CccceeEEEEEecCCCCCcE-EEECceEEEEEeCCCCcE
Confidence            444454444321 11 2333 333445666666654333

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.96  E-value=5.9  Score=21.04  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=17.9

Q ss_pred             CCCeeEEEEcCCCCEEEEee-CC--CcEEEE
Q psy6442         165 FGPIHCVKFSPDGELYASGS-ED--GTLRLW  192 (231)
Q Consensus       165 ~~~V~~v~~spd~~~laS~s-~d--~~v~iw  192 (231)
                      .+.-....|||||+.|+-++ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556788999998776555 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.84  E-value=4.9  Score=26.42  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             EecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEe
Q psy6442         140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG  183 (231)
Q Consensus       140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~  183 (231)
                      .+...|++..||..+++..--+.+ -.-.+.|+++||+.+++.+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            355678999999988763222222 2357899999999966655

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=81.35  E-value=4.6  Score=19.98  Aligned_cols=25  Identities=24%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         168 IHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       168 V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                      ...++++++|+++++=+....|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4677888888887777777777654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.33  E-value=23  Score=27.49  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             CCCEEEEEeCCC--CEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEE--EEEcCCeEEEEECCCcceEEeeeccceeE
Q psy6442          51 NNTRLISCAEDK--TVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTI--TVTHGSCVTFLDANSLELIKEHKVPAQVH  125 (231)
Q Consensus        51 ~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  125 (231)
                      ++..+.|.+.-|  .|++||++.++.+....+. +.++.=-+..-+..+  ..-.++.-..+|.++.+.+.++..+.+--
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            455666766543  5889999998887666554 222211122222222  22345555667888777777776655433


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee----ccCC-CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES----FKGH-FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~----~~~h-~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .+    ..++..+..++...+++.-|.++-.++.+    +.|- -..++.+.| =||.++|-.=.+..|..-+..+|++.
T Consensus       135 gL----t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~  209 (262)
T COG3823         135 GL----TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVV  209 (262)
T ss_pred             ee----ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEE
Confidence            32    33455577766666777767655443332    2221 112233333 25666666655666766778888876


Q ss_pred             e
Q psy6442         201 G  201 (231)
Q Consensus       201 ~  201 (231)
                      .
T Consensus       210 ~  210 (262)
T COG3823         210 A  210 (262)
T ss_pred             E
Confidence            4

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=81.31  E-value=25  Score=27.92  Aligned_cols=112  Identities=11%  Similarity=0.156  Sum_probs=65.3

Q ss_pred             CcceeEEEccCCCEEEE-Ec-CCeEEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-
Q psy6442          82 AVPNSLEISRDGTTITV-TH-GSCVTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-  156 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~-~~-~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-  156 (231)
                      ..+..+++.|+...+++ .. .+.|..++. .++.++++....  ....+..  -.++.++++.-.++++..++..... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEEE----T
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE--ECCCEEEEEEcCCCcEEEEEEecccc
Confidence            35788999998776554 44 356766776 467777776543  3333333  4566666665557888888773211 


Q ss_pred             -----eeeec-----cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         157 -----EIESF-----KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       157 -----~~~~~-----~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                           ....+     ..+...+-.++|.|.++.|..+-+..-.+|+.+..
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence                 11111     12445578899999887777777777778887654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=80.80  E-value=33  Score=31.29  Aligned_cols=48  Identities=17%  Similarity=0.312  Sum_probs=33.8

Q ss_pred             CCCEEEEeCCCCCceEEEEe--CCcceeEEEc--cCCCE-EEEEcCCeEEEEE
Q psy6442          61 DKTVRLWDVSASAEVQKLEF--GAVPNSLEIS--RDGTT-ITVTHGSCVTFLD  108 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~--~~~~~-~~~~~~~~i~~~d  108 (231)
                      -.++.|||.+.+.......+  ...+.++.|.  |+++. ++++....+.++.
T Consensus        50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            45788999998876555555  5677777774  66664 5667777777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=80.65  E-value=7.8  Score=21.63  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      |.|.++.|+|+...            +..|+-+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~------------~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGG------------NDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCc------------ccEEEEEccCCeEEEEEccc
Confidence            57889999986321            24566665668899999985

It contains a characteristic DLL sequence motif.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.23  E-value=3  Score=37.12  Aligned_cols=30  Identities=20%  Similarity=0.567  Sum_probs=25.9

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +...|++.+.|+++|+||+.+++++.+...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            567899999999999999999999766543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-06
2h9l_A	329	Wdr5delta23 Length = 329		7e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 18  IGTFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77
           + T  GH   VWGV               F     T + S ++DKTV+LW+ +       
Sbjct: 337 LQTLTGHSSSVWGV--------------AFSPDGQT-IASASDDKTVKLWNRNGQLLQTL 381
Query: 78  LEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQV---HSASLLLNSE 134
               +    +  S DG TI        +  D  +++L   +    Q    HS+S+   + 
Sbjct: 382 TGHSSSVRGVAFSPDGQTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 434
Query: 135 RP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
            P    +    D K  K     G  +++  GH   +  V FSPDG+  AS S+D T++LW
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 193 QTN 195
             N
Sbjct: 495 NRN 497

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 41/152 (26%)
Query: 47   FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF 106
            F+   ++RL+S + D TV++W+V                   I RD T    T  SC   
Sbjct: 1050 FRLLQDSRLLSWSFDGTVKVWNVITG---------------RIERDFTCHQGTVLSCAIS 1094
Query: 107  LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
             DA         K                          K++ FD  +   +   KGH G
Sbjct: 1095 SDATKFSSTSADKTA------------------------KIWSFDLLS--PLHELKGHNG 1128
Query: 167  PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
             + C  FS DG L A+G ++G +R+W  + G+
Sbjct: 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 41/152 (26%)
Query: 47   FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF 106
            F+   ++RL+S + D TV++W+V                   I RD T    T  SC   
Sbjct: 1057 FRLLQDSRLLSWSFDGTVKVWNVITG---------------RIERDFTCHQGTVLSCAIS 1101
Query: 107  LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
             DA         K                          K++ FD  +   +   KGH G
Sbjct: 1102 SDATKFSSTSADKTA------------------------KIWSFDLLS--PLHELKGHNG 1135
Query: 167  PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
             + C  FS DG L A+G ++G +R+W  + G+
Sbjct: 1136 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20  TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           TFEGH+  V  V               F  K+ +   S   D+TV++W +  S       
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80  FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
               PN         T+T      V ++D   L                     ++P  +
Sbjct: 175 ----PN--------FTLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
              +DL +  +DY T + + + +GH   +    F P   +  SGSEDGTL++W ++   T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
           Y + K +  GL  S
Sbjct: 260 YKVEKTLNVGLERS 273

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           + G +D ++  F+Y+TG ++  F+ H   I  +   P      SGS+D T++LW  N   
Sbjct: 71  IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
            + L +  EG
Sbjct: 129 NWALEQTFEG 138

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20  TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           TFEGH+  V  V               F  K+ +   S   D+TV++W +  S       
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80  FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
               PN         T+T      V ++D   L                     ++P  +
Sbjct: 175 ----PN--------FTLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
              +DL +  +DY T + + + +GH   +    F P   +  SGSEDGTL++W ++   T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
           Y + K +  GL  S
Sbjct: 260 YKVEKTLNVGLERS 273

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           + G +D ++  F+Y+TG ++  F+ H   I  +   P      SGS+D T++LW  N   
Sbjct: 71  IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
            + L +  EG
Sbjct: 129 NWALEQTFEG 138

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20  TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           TFEGH+  V  V               F  K+ +   S   D+TV++W +  S       
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80  FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
               PN         T+T      V ++D   L                     ++P  +
Sbjct: 175 ----PNF--------TLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
              +DL +  +DY T + + + +GH   +    F P   +  SGSEDGTL++W ++   T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
           Y + K +  GL  S
Sbjct: 260 YKVEKTLNVGLERS 273

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           + G +D ++  F+Y+TG ++  F+ H   I  +   P      SGS+D T++LW  N   
Sbjct: 71  IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
            + L +  EG
Sbjct: 129 NWALEQTFEG 138

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 55/194 (28%)
Query: 20  TFEGHKGCVWGVDINXXXXXXXXXXXXFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           TFEGH+  V  V               F  K+ +   S   D+TV++W +  S       
Sbjct: 135 TFEGHEHFVMCV--------------AFNPKDPSTFASGCLDRTVKVWSLGQST------ 174
Query: 80  FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV 139
               PN         T+T      V ++D   L                     ++P  +
Sbjct: 175 ----PNF--------TLTTGQERGVNYVDYYPL--------------------PDKPYMI 202
Query: 140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
              +DL +  +DY T + + + +GH   +    F P   +  SGSEDGTL++W ++   T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---T 259
Query: 200 YGLWKCIEGGLNNS 213
           Y + K +  GL  S
Sbjct: 260 YKVEKTLNVGLERS 273

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           + G +D ++  F+Y+TG ++  F+ H   I  +   P      SGS+D T++LW  N   
Sbjct: 71  IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--NWEN 128
Query: 199 TYGLWKCIEG 208
            + L +  EG
Sbjct: 129 NWALEQTFEG 138

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 57  SCAEDKTVRLWDVSASAEVQKLEFGAVPN-SLEISRDGTTI-TVTHGSCVTFLDANSLEL 114
           S + D  +RLWD+    +++ ++ G V   +L  S D   + T TH   V      S + 
Sbjct: 97  SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK- 155
Query: 115 IKEHKVPAQ-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
            KE+ +  +     S+  + +      G  D  +  FD +TG  + + +GH  PI  + F
Sbjct: 156 -KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 174 SPDGELYASGSEDGTLRLW 192
           SPD +L  + S+DG ++++
Sbjct: 215 SPDSQLLVTASDDGYIKIY 233

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 36/146 (24%)
Query: 53  TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL 112
           TRLI+ + D+T  LWDV+                  IS  G+     H + V  L  NSL
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQR--------------ISIFGSEFPSGHTADVLSLSINSL 216
Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYS-TGAEIESFKGHFGPIHCV 171
                                   +F+ G  D  +  +D   T   + ++ GH G I+ V
Sbjct: 217 NA---------------------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 172 KFSPDGELYASGSEDGTLRLWQTNVG 197
           KF PDG+ + +GS+DGT RL+    G
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTG 281

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-VTFLDANSLEL 114
           +S + D T+RLWD++     ++   G   + L ++       +  GS   T    N+L +
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160
Query: 115 IKEHKVPAQVHS-----ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
            K + V  + HS          NS  PI V  G D  +  ++ +      +  GH G ++
Sbjct: 161 CK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 219
Query: 170 CVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            V  SPDG L ASG +DG   LW  N GK
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGK 248

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-VTFLDANSLEL 114
           +S + D T+RLWD++     ++   G   + L ++       +  GS   T    N+L +
Sbjct: 79  LSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 137
Query: 115 IKEHKVPAQVHS-----ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH 169
            K + V  + HS          NS  PI V  G D  +  ++ +      +  GH G ++
Sbjct: 138 CK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 196
Query: 170 CVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            V  SPDG L ASG +DG   LW  N GK
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGK 225

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
           + P+ V GG D  +  +D +TG  +   KGH   +  V  SPDG L AS  +DG  RLW 
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 194 TNVGK 198
              G+
Sbjct: 225 LTKGE 229

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 101 GSCVTFLDANSLELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE 159
           G+C  + D  S +L++  H   A V    L  +     FV GG D K   +D  +G  ++
Sbjct: 176 GTCALW-DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203
           +F+ H   ++ V++ P G+ +ASGS+D T RL+     +   ++
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 55  LISCAEDKTVRLWDVSASAE-VQKLEFGAVPNS-LEISRDGTTITVTHGSCVTFL-DANS 111
           +I+  +D  +  +DVS + E V  ++      S ++ S D T    +     +FL D ++
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--------------- 156
           L+++K+++    +++A +    E  I + GG++ K    D +T +               
Sbjct: 250 LQVLKKYETDCPLNTAVITPLKEF-IILGGGQEAK----DVTTTSANEGKFEARFYHKIF 304
Query: 157 --EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
             EI   +GHFGP++ V  SP G  YASG EDG +RL
Sbjct: 305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 55  LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC---VTFLDANS 111
           ++S +ED T+++WD   + + ++   G   +  +IS D +   +   S    +   D   
Sbjct: 123 MVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 112 LELIKE-HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
            E I+  H     V S S++ N +  +     + +KM+  +  TG  +++F GH   +  
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRM 239
Query: 171 VKFSPDGELYASGSEDGTLRLW 192
           V+ + DG L AS S D T+R+W
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVW 261

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 136 PIF---VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
           P+F   V   ED  +  +DY TG    + KGH   +  + F   G+L AS S D T++LW
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 134 WDVKTGK 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 79  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 139 WDVKTGK 145

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 140 WDVKTGK 146

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 134 WDVKTGK 140

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 70  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 130 WDVKTGK 136

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 75  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 135 WDVKTGK 141

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 73  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 133 WDVKTGK 139

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 140 WDVKTGK 146

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 137 WDVKTGK 143

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 151 WDVKTGK 157

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 137 WDVKTGK 143

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 156 WDVKTGK 162

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 158 WDVKTGK 164

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 137 WDVKTGK 143

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 192 WQTNVGK 198
           W    GK
Sbjct: 140 WDVKTGK 146

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55  LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
           L+S ++DKT+++WDVS+                             G C+  L  +S  +
Sbjct: 83  LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
                            N +  + V G  D  +  +D  TG  +++   H  P+  V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
            DG L  S S DG  R+W T  G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVG 197
           W    G
Sbjct: 137 WDVKTG 142

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 55  LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL 114
           L+S ++DKT+++WDVS+                             G C+  L  +S  +
Sbjct: 83  LVSASDDKTLKIWDVSS-----------------------------GKCLKTLKGHSNYV 113
Query: 115 IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
                            N +  + V G  D  +  +D  TG  +++   H  P+  V F+
Sbjct: 114 F------------CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 175 PDGELYASGSEDGTLRLWQTNVGK 198
            DG L  S S DG  R+W T  G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQ 185

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRL 191
           +S+  + V   +D  +  +D S+G  +++ KGH   + C  F+P   L  SGS D ++R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 192 WQTNVG 197
           W    G
Sbjct: 137 WDVKTG 142

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 51  NNTRLISCAEDKTVRLWDVSASAEV--QKLEFG--AVPNSLEISRDGTTITVTHGSCVTF 106
           NN  +++C++D+++ +WD+++  ++  +++  G  A  N ++   D   ++ +    +  
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKV 280
Query: 107 LDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG 166
            + ++ E ++   +       + L   +R + V G  D  +  +D   GA +   +GH  
Sbjct: 281 WNTSTCEFVR--TLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 167 PIHCVKFSPDGELYASGSEDGTLRLW 192
            + C++F  D +   SG+ DG +++W
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVW 361

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           SL L  +  +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
           T RL+
Sbjct: 249 TCRLF 253

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           SL L  +  +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
           T RL+
Sbjct: 249 TCRLF 253

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           SL L  +  +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
           T RL+
Sbjct: 249 TCRLF 253

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           SL L  +  +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 188 TLRLW 192
           T RL+
Sbjct: 249 TCRLF 253

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           SL L  +  +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D 
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 188 TLRLW 192
           T RL+
Sbjct: 260 TCRLF 264

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
           +S + DKT+RLWDV+     Q+   G   + + +            SRD T  +    G 
Sbjct: 75  LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 133
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
           C+  L  ++  + +   VP +        + +    +  G D KM K       +IE+ F
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 186
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            GH   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 25  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 81
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 82  TLRLWDVATGETY 94

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
           +S + DKT+RLWDV+     Q+   G   + + +            SRD T  +    G 
Sbjct: 81  LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
           C+  L  ++  + +   VP +        + +    +  G D KM K       +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            GH   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 31  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 88  TLRLWDVATGETY 100

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
           +S + DKT+RLWDV+     Q+   G   + + +            SRD T  +    G 
Sbjct: 81  LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
           C+  L  ++  + +   VP +        + +    +  G D KM K       +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            GH   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 31  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 88  TLRLWDVATGETY 100

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
           +S + DKT+RLWDV+     Q+   G   + + +            SRD T  +    G 
Sbjct: 81  LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
           C+  L  ++  + +   VP +        + +    +  G D KM K       +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            GH   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 31  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 88  TLRLWDVATGETY 100

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI------------SRDGTT-ITVTHGS 102
           +S + DKT+RLWDV+     Q+   G   + + +            SRD T  +    G 
Sbjct: 81  LSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-F 161
           C+  L  ++  + +   VP +        + +    +  G D KM K       +IE+ F
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGND-KMVKAWNLNQFQIEADF 192
Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            GH   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 31  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 88  TLRLWDVATGETY 100

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 55  LISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTITVTHGSCVTFLDANSLE 113
           +++  E+  +RLW+ +  A +  L F   P  S++ ++DGT I       VT L      
Sbjct: 123 IVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181
Query: 114 LIKEH---------KVPAQVHSA--SLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEIE 159
            + +H          + A+ HS   SL ++ E      FV  G    ++ +  +      
Sbjct: 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241
Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
              GH GPI  ++F+   +L  S S+DGTLR+W 
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
           +N +++S + D+T++LW+     +    E G      E  RD         SCV F    
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGG------EGHRDWV-------SCVRFSP-- 527
Query: 111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC 170
                                N+ +P  V    D  +  ++ S      +  GH G +  
Sbjct: 528 ---------------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST 566
Query: 171 VKFSPDGELYASGSEDGTLRLWQTNVGK 198
           V  SPDG L ASG +DG + LW    GK
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGK 594

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 56  ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEI----------SRDGTT-ITVTHGSC 103
           +S + DKT+RLWDV+     Q+     +   S++I          SRD T  +    G C
Sbjct: 81  LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 104 VTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG 163
           +  L  ++  + +   VP +        + +    +  G D  +  ++ +       F G
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKA------DDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           H   I+ +  SPDG L AS  +DG + LW     K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           +LLL++ R   +      K+   D   G  + SFKGH   +     + DG    S S D 
Sbjct: 31  NLLLSASRDKTLIS---WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 188 TLRLWQTNVGKTY 200
           TLRLW    G+TY
Sbjct: 88  TLRLWDVATGETY 100

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98  VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
           V  G+C++ +DA+S           QV S     + +  I   G    ++  + Y T A+
Sbjct: 228 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
           +   KGH   +  +  SPDG   AS + D TLRLW+
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98  VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
           V  G+C++ +DA+S           QV S     + +  I   G    ++  + Y T A+
Sbjct: 308 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
           +   KGH   +  +  SPDG   AS + D TLRLW+
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 98  VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
           V  G+C++ +DA+S           QV S     + +  I   G    ++  + Y T A+
Sbjct: 319 VCSGACLSAVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 367
Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ 193
           +   KGH   +  +  SPDG   AS + D TLRLW+
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 54  RLISCAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDGTTITVTHGSCVTFLDANS 111
           R++S ++D T+++W       ++ L    G V +S    RD   I+ +    +   +A +
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNAET 188
Query: 112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCV 171
            E I  H +     +   +   E+ + V G  D  +  +D  TG  +    GH   + CV
Sbjct: 189 GECI--HTLYGHTSTVRCMHLHEKRV-VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 172 KFSPDGELYASGSEDGTLRLW 192
           ++  DG    SG+ D  +++W
Sbjct: 246 QY--DGRRVVSGAYDFMVKVW 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.98
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.8
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.65
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.64
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.59
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.59
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.58
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.48
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.44
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.42
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.41
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.34
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.28
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.23
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.22
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.21
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.15
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.01
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.01
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.0
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.99
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.98
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.98
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.98
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.88
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.88
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.87
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.83
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.81
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.75
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.72
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.7
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.69
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.65
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.62
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.39
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.34
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.0
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.92
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.49
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.35
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.29
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.14
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.07
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.99
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.93
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.74
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.7
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.38
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.2
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.49
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.47
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.3
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.02
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.87
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	91.21
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	90.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	90.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.8
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.71
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.09
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	87.68
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.34
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	86.13
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	85.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.77
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	84.24
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	83.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.21
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	82.83
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.47
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	80.85

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.6e-32  Score=218.01  Aligned_cols=206  Identities=19%  Similarity=0.271  Sum_probs=172.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++.||+|++|+..+++.+.++.+|...|.++.|+|+++.+++++.|..++                           ++.
T Consensus        31 ~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  110 (304)
T 2ynn_A           31 TLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP  110 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             EcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC
Confidence            36799999999999999999999999999999999999999998875332                           678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCce-EEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--cceeEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEV-QKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--PAQVHSA  127 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~-~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~  127 (231)
                      .|+|++.|++|++||+..+... ..+. +...+.+++|+| ++..++. +.++.+++||............  ...+...
T Consensus       111 ~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~  190 (304)
T 2ynn_A          111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (304)
T ss_dssp             EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence            8999999999999999877443 3333 456789999999 4565554 5689999999876655443332  2345555


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      .+.+.+++.++++++.|++|++||+++++.+.++.+|...|.+++|+|++++|+|++.|++|+|||+.+++....++..
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            5555568889999999999999999999999999999999999999999999999999999999999999988777643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-31  Score=225.66  Aligned_cols=216  Identities=24%  Similarity=0.346  Sum_probs=180.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++.||+|++|+..+|+.+.++++|.+.|.+++|+|+++.+++++.|..++                           ++.
T Consensus       126 ~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~  205 (410)
T 1vyh_C          126 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD  205 (410)
T ss_dssp             EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred             EeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence            46899999999999999999999999999999999999999998774332                           567


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  130 (231)
                      .|+|++.|++|++||+.++.++..+. +...+..+.++|++..++. +.++.+++||..+......+..+ ..+.++.+ 
T Consensus       206 ~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~-  284 (410)
T 1vyh_C          206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW-  284 (410)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEE-
Confidence            89999999999999999999887775 4567899999999997765 46889999999888776665443 34555444 


Q ss_pred             ecCC--------------------CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442         131 LNSE--------------------RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR  190 (231)
Q Consensus       131 ~~~~--------------------~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~  190 (231)
                       +|+                    +.++++|+.|++|++||+.++..+..+.+|...|++++|+|++++|+|++.|++|+
T Consensus       285 -~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~  363 (410)
T 1vyh_C          285 -APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR  363 (410)
T ss_dssp             -CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             -cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence             443                    66899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         191 LWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      |||+.+++....+....+. ...+++.++
T Consensus       364 vwd~~~~~~~~~~~~h~~~-v~~l~~~~~  391 (410)
T 1vyh_C          364 VWDYKNKRCMKTLNAHEHF-VTSLDFHKT  391 (410)
T ss_dssp             EECCTTSCCCEEEECCSSC-EEEEEECSS
T ss_pred             EEECCCCceEEEEcCCCCc-EEEEEEcCC
Confidence            9999999887777654332 233444443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.3e-31  Score=215.76  Aligned_cols=217  Identities=18%  Similarity=0.241  Sum_probs=180.8

Q ss_pred             CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEecccccccc---------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~   51 (231)
                      ++.|++|++|+..+++.  ..++.+|...|.+++|++++..+++++.|..++                           +
T Consensus        54 gs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd  133 (321)
T 3ow8_A           54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD  133 (321)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred             EcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence            47899999999877764  556899999999999999999999998764332                           6


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSAS  128 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  128 (231)
                      ++.|++++.|++|++||+.+++....+.. ...+.+++|+|+++.++.+ .++.+++||..+.+.+..+..+ .++..+.
T Consensus       134 g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  213 (321)
T 3ow8_A          134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT  213 (321)
T ss_dssp             SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE
T ss_pred             CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE
Confidence            78899999999999999999888777654 4568999999999987764 5789999999988887776543 3555555


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      +  +|++.++++++.|++|++||++++..+..+.+|...|.+++|+|++.+|++++.|++|+|||+.+++....+.....
T Consensus       214 ~--spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~  291 (321)
T 3ow8_A          214 F--SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD  291 (321)
T ss_dssp             E--CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             E--cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence            4  88999999999999999999999999999999999999999999999999999999999999999988777654332


Q ss_pred             cccCCCCCCccc
Q psy6442         209 GLNNSLGLDSSG  220 (231)
Q Consensus       209 ~~~~~~~~~~~~  220 (231)
                      . ...+++.++|
T Consensus       292 ~-v~~v~~s~~g  302 (321)
T 3ow8_A          292 Q-VWGVKYNGNG  302 (321)
T ss_dssp             C-EEEEEECTTS
T ss_pred             c-EEEEEECCCC
Confidence            2 2334444444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=218.85  Aligned_cols=184  Identities=18%  Similarity=0.214  Sum_probs=151.7

Q ss_pred             CCcCCCceeeeccCCCeEee----eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT----FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~----l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~   76 (231)
                      ++.||+|+||+..+++.+..    +.+|.+.|.+++|+|++               ++|+|++.|++|++||+.+++++.
T Consensus        99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---------------~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---------------TQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCCcEEE
Confidence            46899999999999987654    34899999999999974               458999999999999999999888


Q ss_pred             EEE-eCCcceeEEEccCCCE-EE-EEcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecC-CCCEEEEecCCCeEEE
Q psy6442          77 KLE-FGAVPNSLEISRDGTT-IT-VTHGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNS-ERPIFVCGGEDLKMYK  149 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~~~~-~~-~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~g~~d~~i~~  149 (231)
                      .+. +...+.+++|+|++.. ++ .+.++.+++||.++.+....+....   .+..  +.+++ ++.++++|+.|++|++
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTS--LAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEE--EEECSSCTTEEEEEETTSEEEE
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecccee--eeecCCCCcceEEeccCCcEEE
Confidence            775 5678999999999863 33 4568999999999888776654322   2333  33455 5678899999999999


Q ss_pred             EeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         150 FDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ||+++++.+.++.+|...|++++|+|++ ++|+||+.|++|+|||+.+++.+.
T Consensus       242 wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             EESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999999999999999999999999998 589999999999999999987653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9e-31  Score=213.85  Aligned_cols=192  Identities=18%  Similarity=0.260  Sum_probs=168.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~   53 (231)
                      ++.|++|++|+..+|+.+..+.+|...+++++|+|+++.+++++.+..+                           .+++
T Consensus        98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~  177 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK  177 (321)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred             EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence            3679999999999999999999999999999999999999998765322                           2678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  130 (231)
                      .|++++.|++|++||+.+++.+..+. +...+.+++|+|++..++.+ .++.+++||.........+..+ ..+..+.  
T Consensus       178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~--  255 (321)
T 3ow8_A          178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA--  255 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE--
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE--
Confidence            99999999999999999998887775 45678999999999987765 5789999999888777665543 3455444  


Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ++|++..+++++.|++|++||+.+++.+.++.+|..+|.+++|+|++.+|++++.|++|+|||.
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            4899999999999999999999999999999999999999999999999999999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.98  E-value=7.5e-30  Score=209.65  Aligned_cols=218  Identities=17%  Similarity=0.265  Sum_probs=180.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------------c
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------K   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------~   50 (231)
                      ++.||+|++|+..+++.+.++..|.+.|.+++|+|+++++++++.|..+                              .
T Consensus        73 ~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  152 (340)
T 1got_B           73 ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL  152 (340)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE
T ss_pred             EeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC
Confidence            4689999999999999999999999999999999999999998765321                              1


Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      ++..+++++.|++|++||+.+++++..+. +...+.+++++|++..++. +.++.+++||..+......+..+ ..+..+
T Consensus       153 ~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
T 1got_B          153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             CCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence            34569999999999999999998877765 4568999999999987765 46899999999988877766543 345555


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .+  +|++..+++|+.|++|++||+++++.+..+.  .+...|.+++|+|++++|++++.|+.|+|||+.+++....+.+
T Consensus       233 ~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          233 CF--FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EE--cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence            44  8899999999999999999999888776654  3445799999999999999999999999999999998887776


Q ss_pred             cCCcccCCCCCCcccc
Q psy6442         206 IEGGLNNSLGLDSSGH  221 (231)
Q Consensus       206 ~~~~~~~~~~~~~~~~  221 (231)
                      ..+. ...+++.++|+
T Consensus       311 h~~~-v~~~~~s~dg~  325 (340)
T 1got_B          311 HDNR-VSCLGVTDDGM  325 (340)
T ss_dssp             CSSC-EEEEEECTTSS
T ss_pred             CCCc-EEEEEEcCCCC
Confidence            5443 33455555554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=5e-30  Score=216.01  Aligned_cols=193  Identities=19%  Similarity=0.283  Sum_probs=166.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++.||+|++|+..+++++.++.+|.+.|.++.|+|+++.+++++.|..+.                           ++.
T Consensus       168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~  247 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  247 (410)
T ss_dssp             EETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence            46899999999999999999999999999999999999999998764321                           567


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccC--------------------CCEEEE-EcCCeEEEEECCC
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD--------------------GTTITV-THGSCVTFLDANS  111 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~--------------------~~~~~~-~~~~~i~~~d~~~  111 (231)
                      .|++++.|++|++||+.++++...+. +...+.+++|+|+                    +..++. +.++.+++||..+
T Consensus       248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            89999999999999999988877764 4567899999986                    445544 5688999999998


Q ss_pred             cceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442         112 LELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR  190 (231)
Q Consensus       112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~  190 (231)
                      ...+..+..+ ..+..+.  +++++.++++++.|++|++||..+++.+.++.+|...|++++|+|++.+|+||+.|++|+
T Consensus       328 ~~~~~~~~~h~~~v~~v~--~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          328 GMCLMTLVGHDNWVRGVL--FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  405 (410)
T ss_dssp             TEEEEEEECCSSCEEEEE--ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CceEEEEECCCCcEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            8877776543 3455544  488999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy6442         191 LWQTN  195 (231)
Q Consensus       191 iwd~~  195 (231)
                      ||+.+
T Consensus       406 vW~~r  410 (410)
T 1vyh_C          406 VWECR  410 (410)
T ss_dssp             EEC--
T ss_pred             EEeCC
Confidence            99863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=9.4e-30  Score=209.08  Aligned_cols=176  Identities=21%  Similarity=0.339  Sum_probs=154.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.|++|++|+..+++.+.++.+|.+.|.+++|+|++               ..|++++.|++|++||++++.+...+. 
T Consensus       160 ~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT---------------RLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC---------------CEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence            3679999999999999999999999999999999974               458999999999999999998887775 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                      +...+.+++|+|++..++. +.++.+++||.+....+..+..+.   .+..  +.++|++.++++|+.|+.|++||..++
T Consensus       225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS--VSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE--EEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE--EEECCCCCEEEEECCCCeEEEEEcccC
Confidence            4567999999999998765 467899999998877666554332   3444  445899999999999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ..+..+.+|.++|.+++|+|++.+|+||+.|++|+|||
T Consensus       303 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=9.7e-30  Score=207.35  Aligned_cols=205  Identities=21%  Similarity=0.276  Sum_probs=162.4

Q ss_pred             CCcCCCceeeeccC-----CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           1 MCVDGKPMLRQGDT-----GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~-----g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      ++.|++|++|+...     +..+.+|++|.+.|.++.|+|++               .+|+|++.|++|++||+.+++++
T Consensus        36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------------~~l~s~s~D~~v~~wd~~~~~~~  100 (319)
T 3frx_A           36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------------AYALSASWDKTLRLWDVATGETY  100 (319)
T ss_dssp             EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEE
T ss_pred             ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------------CEEEEEeCCCEEEEEECCCCCee
Confidence            47899999999753     44578899999999999999974               45899999999999999999888


Q ss_pred             EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEec----CCCCEEEEecCCCeEEE
Q psy6442          76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLN----SERPIFVCGGEDLKMYK  149 (231)
Q Consensus        76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~d~~i~~  149 (231)
                      ..+. +...+.+++++|++..++. +.++.+++||...............+..+.+.+.    +++..+++++.|++|++
T Consensus       101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  180 (319)
T 3frx_A          101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA  180 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred             EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence            7765 5678999999999987765 5688999999875433222222334444444211    14558999999999999


Q ss_pred             EeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         150 FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ||+.+.+....+.+|..+|.+++|+|++++|++++.|++|+|||+.+++....++...  ....++|.+++..
T Consensus       181 wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~  251 (319)
T 3frx_A          181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--EVFSLAFSPNRYW  251 (319)
T ss_dssp             EETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS--CEEEEEECSSSSE
T ss_pred             EECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--cEEEEEEcCCCCE
Confidence            9999998889999999999999999999999999999999999999998877776432  3344556555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=203.82  Aligned_cols=195  Identities=18%  Similarity=0.253  Sum_probs=157.6

Q ss_pred             CcCCCceeeeccCCCeEeeee--cccccEEEEEECCCCceeEecccccccc-----------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAK-----------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------   50 (231)
                      |.|++|+||+..+|+++++++  +|.+.|.+++|+|+++++++|+.|..++                             
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~  121 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  121 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence            569999999999999988775  6788899999999999999998764322                             


Q ss_pred             ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceE----E-EEeCCccee
Q psy6442          51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQ----K-LEFGAVPNS   86 (231)
Q Consensus        51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~----~-~~~~~~~~~   86 (231)
                                                             ++..|++++.|++|++||+++++...    . ......+..
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  201 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA  201 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred             EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence                                                   56789999999999999998765421    1 123456788


Q ss_pred             EEEccCCCEEE-E-E--cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE--EecCCCeEEEEeCCCcceeee
Q psy6442          87 LEISRDGTTIT-V-T--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV--CGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        87 v~~~~~~~~~~-~-~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~~~d~~~~~~~~~  160 (231)
                      ++++|++..++ . +  .++.+++||...............+....+  .+.+..++  +|+.|+.|++||+.+++++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~  279 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKYPTMAKVAE  279 (318)
T ss_dssp             EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE--ETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred             EEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee--cccccceEEEEEcCCCEEEEEECCCCcEEEE
Confidence            89998876443 2 2  357899999988877766666656665555  45555544  455899999999999999999


Q ss_pred             ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +.+|.++|++++|+|++++|+||+.|++|+|||+....
T Consensus       280 l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999999999999999997654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.8e-29  Score=210.50  Aligned_cols=196  Identities=21%  Similarity=0.313  Sum_probs=151.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA-------------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-------------------------------   49 (231)
                      ++.||+|++|+..+++.+.++++|...|.+++|+|+++.+++++.|..+                               
T Consensus        84 ~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~  163 (380)
T 3iz6_a           84 ASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC  163 (380)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC
T ss_pred             EeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE
Confidence            4789999999999999999999999999999999999988887654211                               


Q ss_pred             ----cCCCEEEEEeCCCCEEEEeCCCC-------------------------------------------------CceE
Q psy6442          50 ----KNNTRLISCAEDKTVRLWDVSAS-------------------------------------------------AEVQ   76 (231)
Q Consensus        50 ----~~~~~l~s~s~D~ti~iwd~~~~-------------------------------------------------~~~~   76 (231)
                          ..+..|+|++.|++|++||+.++                                                 +.+.
T Consensus       164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~  243 (380)
T 3iz6_a          164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR  243 (380)
T ss_dssp             BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred             EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence                01233555555555555554332                                                 2223


Q ss_pred             EEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc--------eeEEEEEEecCCCCEEEEecCCCe
Q psy6442          77 KLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA--------QVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                      .+. +...+.+++|+|++..++.+ .++.+++||.++...+..+....        .+..  +.++|++.++++|+.|+.
T Consensus       244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS--VAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE--EEECSSSSEEEEECTTSC
T ss_pred             EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE--EEECCCCCEEEEEECCCC
Confidence            322 34568899999999987664 57899999999887776554321        1333  445899999999999999


Q ss_pred             EEEEeCCCcceeeec----cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         147 MYKFDYSTGAEIESF----KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       147 i~~~d~~~~~~~~~~----~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      |++||...++.+..+    .+|.+.|++++|+|++.+|+||+.|++|+||++...+
T Consensus       322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999888877665    6899999999999999999999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=4e-29  Score=206.65  Aligned_cols=180  Identities=22%  Similarity=0.365  Sum_probs=154.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.|++|++|+..+++++.++.+|...|.+++|+|+.             ++..|++++.|++|++||+++++++..+. 
T Consensus       172 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~  238 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFET  238 (354)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS-------------SCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC-------------CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            3679999999999999999999999999999998852             25679999999999999999999887775 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      +...+.+++|+|++..++. +.++.+++||.+....+..+.... .....++.+++++.++++|+.|++|++||+.+++.
T Consensus       239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~  318 (354)
T 2pbi_B          239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR  318 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence            4568999999999987765 468899999998876655543321 11223344589999999999999999999999999


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      +..+.+|..+|++++|+|++++|+|++.|++|+||+
T Consensus       319 ~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.2e-28  Score=203.81  Aligned_cols=219  Identities=19%  Similarity=0.264  Sum_probs=178.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA-------------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-------------------------------   49 (231)
                      ++.||+|++|+..+++....+..|...|.++.|+|++..+++++.|..+                               
T Consensus        82 ~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  161 (354)
T 2pbi_B           82 SSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS  161 (354)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEE
T ss_pred             EeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEE
Confidence            4789999999999999999999999999999999999999998765321                               


Q ss_pred             --cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEeeecc-c
Q psy6442          50 --KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKEHKVP-A  122 (231)
Q Consensus        50 --~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~  122 (231)
                        .++..|+|++.|++|++||+.+++++..+. +...+.+++++|+  +..++. +.++.+++||.++.+.+..+..+ .
T Consensus       162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES  241 (354)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence              145689999999999999999999888776 4567888888874  555554 56899999999988877766543 3


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .+..+.+  +|++..+++++.|++|++||++.+..+..+..  +...+.+++|+|++++|++++.|++|+|||+.+++..
T Consensus       242 ~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  319 (354)
T 2pbi_B          242 DVNSVRY--YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV  319 (354)
T ss_dssp             CEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CeEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence            5555544  88999999999999999999988877666543  3457899999999999999999999999999999988


Q ss_pred             eeeeccCCcccCCCCCCccccc
Q psy6442         201 GLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ..+....+. ...+++.++|..
T Consensus       320 ~~l~~h~~~-v~~l~~spdg~~  340 (354)
T 2pbi_B          320 SILFGHENR-VSTLRVSPDGTA  340 (354)
T ss_dssp             EEECCCSSC-EEEEEECTTSSC
T ss_pred             EEEECCCCc-EEEEEECCCCCE
Confidence            777654432 344566666654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=206.97  Aligned_cols=181  Identities=17%  Similarity=0.207  Sum_probs=148.5

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.||+|++|+..+++.+.+|.+|++.|.++.|++++              ...|+|++.|++|++||++++++...+..
T Consensus       145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--------------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  210 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--------------DSVFLSCSEDNRILLWDTRCPKPASQIGC  210 (344)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--------------TTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--------------CCceeeeccccccccccccccceeeeeec
Confidence            4689999999999999999999999999999999975              24589999999999999999988776642


Q ss_pred             ---CCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCC-CEEEEecCCCeEEEEeCC
Q psy6442          81 ---GAVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSER-PIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus        81 ---~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~  153 (231)
                         ...+.+++++|++. .++. +.++.|++||.++.+.+..+..+ ..+..+.+  +|++ .++++|+.|++|++||..
T Consensus       211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f--sp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF--SPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE--CSSSSCCEEEEETTSCEEEECTT
T ss_pred             ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE--ccCCCeEEEEEeCCCeEEEEECC
Confidence               34578999999654 4444 46789999999988887776654 35555554  7776 578999999999999998


Q ss_pred             CcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC
Q psy6442         154 TGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       154 ~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~  198 (231)
                      +++.+ .+.+|.+.|++++|+|++. +|+|++.|++|++|++.+..
T Consensus       289 ~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          289 LSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            87754 5789999999999999985 68899999999999997754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=4.1e-29  Score=210.73  Aligned_cols=199  Identities=19%  Similarity=0.265  Sum_probs=155.8

Q ss_pred             CcCCCceeeeccCCCeEeeee--cccccEEEEEECCCCceeEecccccccc-----------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAK-----------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------   50 (231)
                      |.|++|+||+..+|+.++.+.  +|.+.|.+++|+|+|+++++|+.|..+.                             
T Consensus       122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~  201 (420)
T 4gga_A          122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  201 (420)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCE
Confidence            569999999999999887765  6788999999999999999998764332                             


Q ss_pred             ---------------------------------------CCCEEEEEeCCCCEEEEeCCCCCc----eEEE-EeCCccee
Q psy6442          51 ---------------------------------------NNTRLISCAEDKTVRLWDVSASAE----VQKL-EFGAVPNS   86 (231)
Q Consensus        51 ---------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~----~~~~-~~~~~~~~   86 (231)
                                                             ++..+++++.|+.+++||...++.    +... .+...+..
T Consensus       202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~  281 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA  281 (420)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred             EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceee
Confidence                                                   445666777777777777665432    1111 23456788


Q ss_pred             EEEccCCCEEE-EE---cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEe--cCCCeEEEEeCCCcceeee
Q psy6442          87 LEISRDGTTIT-VT---HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCG--GEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus        87 v~~~~~~~~~~-~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~~~d~~~~~~~~~  160 (231)
                      ++|+|.+..++ +.   .+++|++||..+............+....+  .+++..++++  ..|+.|++||..+++.+.+
T Consensus       282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~--~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~  359 (420)
T 4gga_A          282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKYPTMAKVAE  359 (420)
T ss_dssp             EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE--ETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred             eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee--cCCCCeEEEEEecCCCEEEEEECCCCcEEEE
Confidence            99999876443 32   468999999999988888777666665554  5666666554  4789999999999999999


Q ss_pred             ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +.+|.++|++++|+|||++|+||+.|++|+|||+....+...
T Consensus       360 l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            999999999999999999999999999999999987665443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.6e-29  Score=202.05  Aligned_cols=194  Identities=23%  Similarity=0.309  Sum_probs=161.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      ++.|++|++|+..+|+.+.++.+|.+.|.+++|+|++..+++++.|..++                              
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence            46899999999999999999999999999999999999999998875332                              


Q ss_pred             --CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                        ++..|++++.|++|++||+...+....+. +...+.+++++|++..++. +.++.+++||....+.+..+..+.++..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  242 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS  242 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE
Confidence              23479999999999999999887766553 5678999999999998765 4688999999999888877776666665


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc--------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK--------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~--------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      +.+  +|++..++++.. ..+++|++.....+..+.        .|...+.+++|+|||++|++++.|++|+|||+.++
T Consensus       243 ~~~--sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          243 LAF--SPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEE--CSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEE--cCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            554  889998888765 458999987766555442        35678999999999999999999999999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.8e-28  Score=199.67  Aligned_cols=195  Identities=19%  Similarity=0.294  Sum_probs=153.3

Q ss_pred             CCcCCCceeeeccCCC-----eEeeeecccccEEEEEECCCCceeEecccccccc-------------------------
Q psy6442           1 MCVDGKPMLRQGDTGD-----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~-----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------   50 (231)
                      +|.||+|++|+..+++     .+.++++|.+.|.++.|+|+++++++++.|..+.                         
T Consensus        57 ~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (340)
T 4aow_A           57 ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF  136 (340)
T ss_dssp             EETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEE
Confidence            4789999999986553     5778999999999999999999999987763321                         


Q ss_pred             -----------------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCC
Q psy6442          51 -----------------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGA   82 (231)
Q Consensus        51 -----------------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~   82 (231)
                                                                     ....+++++.|++|++||+..++....+. +..
T Consensus       137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence                                                           22346677777777777777666655543 356


Q ss_pred             cceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec
Q psy6442          83 VPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF  161 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~  161 (231)
                      .+.+++++|++..++. +.++.+++||..+.+.+..+.....+..+.+  +|++. +++++.|+.|++||++.+..+..+
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF--SPNRY-WLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE--CSSSS-EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec--CCCCc-eeeccCCCEEEEEECCCCeEEEec
Confidence            7899999999998765 4678999999999888887776666665554  66665 455667999999999877655443


Q ss_pred             ---------cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         162 ---------KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       162 ---------~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                               .+|...|++++|+|++++|+||+.||+|+|||+++|+
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                     4689999999999999999999999999999999885

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=2.6e-29  Score=208.05  Aligned_cols=194  Identities=18%  Similarity=0.271  Sum_probs=150.0

Q ss_pred             CCcCCCceeeeccCCCeEee----eecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT----FEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~----l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------   50 (231)
                      ++.||+|+||+..+++.+..    +.+|.+.|.+++|+|+++.+++++.|..++                          
T Consensus       111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            36799999999988876543    348999999999999999999998764332                          


Q ss_pred             -C-CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCC-EEEE-EcCCeEEEEECCCcceEEeeecc-c
Q psy6442          51 -N-NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGT-TITV-THGSCVTFLDANSLELIKEHKVP-A  122 (231)
Q Consensus        51 -~-~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~  122 (231)
                       + ...+++++.|++|++||++++++...+..   ...+.+++|+|++. .+++ +.++.|++||..+.+.+..+... .
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~  270 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ  270 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce
Confidence             2 35799999999999999998887665543   34688999999865 4544 45789999999988877766543 3


Q ss_pred             eeEEEEEEecCCC-CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q psy6442         123 QVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       123 ~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~  197 (231)
                      .+..+.+  +|++ .++++|+.|++|++||+.+++.+..+ +|.++|++|+|+| ++.+|+|++.|++|++|++.+.
T Consensus       271 ~v~~l~~--sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          271 NITGLAY--SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CEEEEEE--CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             eEEEEEE--cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            5555554  6665 57899999999999999998877655 7999999999999 7899999999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=2.9e-28  Score=197.24  Aligned_cols=218  Identities=21%  Similarity=0.285  Sum_probs=176.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++.||++++|+..+++.+..+.+|...|.+++|+|+++.+++++.|..+.                           ++.
T Consensus        41 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
T 4ery_A           41 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN  120 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             eeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            36799999999999999999999999999999999999999997764321                           567


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc--eeEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA--QVHSASL  129 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~  129 (231)
                      .|++++.|++|++||+++++++..+. +...+.+++++|++..+++ +.++.+++||..+.+.+.......  ++..  +
T Consensus       121 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~  198 (312)
T 4ery_A          121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--V  198 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE--E
T ss_pred             EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE--E
Confidence            89999999999999999998877775 3567899999999987765 467899999999887766553322  3333  4


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeE--EEEc-CCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC--VKFS-PDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~--v~~s-pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      .++|++..+++++.|+.|++||+.+++.+..+.+|...+..  ..++ +++.+|++++.|+.|++||+.+++....++..
T Consensus       199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            45899999999999999999999999999999888765433  3344 67889999999999999999999988777754


Q ss_pred             CCcccCCCCCCcccc
Q psy6442         207 EGGLNNSLGLDSSGH  221 (231)
Q Consensus       207 ~~~~~~~~~~~~~~~  221 (231)
                      .+. ...+++.+++.
T Consensus       279 ~~~-v~~~~~~p~~~  292 (312)
T 4ery_A          279 TDV-VISTACHPTEN  292 (312)
T ss_dssp             SSC-EEEEEECSSSS
T ss_pred             CCc-EEEEeecCcCC
Confidence            332 33344444443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=4.4e-28  Score=202.89  Aligned_cols=191  Identities=18%  Similarity=0.280  Sum_probs=160.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.|++|++|+..+++.+..+.+|.+.|.+++|+|++               ..|++++.|++|++||++++++...+..
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------------~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---------------DKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---------------CEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            4679999999999999999999999999999999974               4589999999999999999998888888


Q ss_pred             CCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--------cceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          81 GAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--------PAQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        81 ~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                      ...+..++++| ++..+++ +.++.+++||..+...+.....        ...+..  +.+++++..+++++.|++|++|
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS--VVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE--EEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE--EEECCCCCEEEEEeCCCEEEEE
Confidence            88899999999 7777665 4688999999988776655421        123444  4458999999999999999999


Q ss_pred             eCCCc------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         151 DYSTG------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       151 d~~~~------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      |+.+.            .....+.+|...|.+++|+|++.+|++++.|++|+|||..+++....++...+
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence            98653            33556789999999999999999999999999999999999998877775543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=3.7e-28  Score=199.72  Aligned_cols=178  Identities=20%  Similarity=0.239  Sum_probs=144.6

Q ss_pred             CCcCCCceeeeccC-------CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDT-------GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~-------g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ++.|++|++|+..+       +..+.++.+|.+.|.++.|+|++               ..|+|++.|++|++||+++++
T Consensus        45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---------------~~l~s~s~D~~v~lwd~~~~~  109 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---------------CFAISSSWDKTLRLWDLRTGT  109 (343)
T ss_dssp             EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---------------TEEEEEETTSEEEEEETTSSC
T ss_pred             EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---------------CEEEEEcCCCcEEEEECCCCc
Confidence            46899999999864       34677899999999999999974               458999999999999999998


Q ss_pred             ceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEee---eccceeEEEEEEecCCC----------CEE
Q psy6442          74 EVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEH---KVPAQVHSASLLLNSER----------PIF  138 (231)
Q Consensus        74 ~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~  138 (231)
                      ++..+. +...+.+++|+|++..++. +.++.+++||..........   .....+..+.+  +|.+          ..+
T Consensus       110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l  187 (343)
T 2xzm_R          110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY--SPIMKSANKVQPFAPYF  187 (343)
T ss_dssp             EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE--CCCCCSCSCCCSSCCEE
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee--ccccccccccCCCCCEE
Confidence            887775 5678999999999997765 56899999998743322221   11223444444  5544          689


Q ss_pred             EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ++++.|++|++||. .......+.+|..+|.+++|+|++++|++++.|++|+|||+..
T Consensus       188 ~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          188 ASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             EEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            99999999999994 5566778899999999999999999999999999999999943

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.2e-28  Score=197.36  Aligned_cols=183  Identities=25%  Similarity=0.330  Sum_probs=143.6

Q ss_pred             CCcCCCceeeeccC--CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442           1 MCVDGKPMLRQGDT--GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~--g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~   76 (231)
                      ++.|++|++|+..+  ++++.+|.+|.+.|++++|+++             .++..|+|++.|++|++||+.+++  .+.
T Consensus        27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-------------~~g~~l~s~s~D~~v~iWd~~~~~~~~~~   93 (297)
T 2pm7_B           27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-------------KFGTILASCSYDGKVMIWKEENGRWSQIA   93 (297)
T ss_dssp             EETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-------------GGCSEEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred             EeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-------------CcCCEEEEEcCCCEEEEEEcCCCceEEEE
Confidence            46899999999864  4789999999999999999863             124579999999999999998774  333


Q ss_pred             EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceE--Eeee-ccceeEEEEEEecCC-------------CC
Q psy6442          77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELI--KEHK-VPAQVHSASLLLNSE-------------RP  136 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~-------------~~  136 (231)
                      .+. +...+.+++|+|+  +..+++ +.++.+++||.......  .... ....+..+.+  +|+             +.
T Consensus        94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~~~~~~~~~~~~  171 (297)
T 2pm7_B           94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR  171 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE--CCCC------------CC
T ss_pred             EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee--cCCcccccccCCCCCCcc
Confidence            333 4567999999997  666554 56899999998765321  2222 2234555554  443             56


Q ss_pred             EEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCC
Q psy6442         137 IFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPDG---ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd~---~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .+++|+.|++|++||+.++.    ....+.+|...|.+++|+|++   .+|||++.|++|+|||+..++
T Consensus       172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence            89999999999999997765    567889999999999999995   799999999999999987753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=3.8e-28  Score=199.63  Aligned_cols=193  Identities=18%  Similarity=0.233  Sum_probs=151.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~   51 (231)
                      ++.|++|++|+..+++.+.++.+|.+.|.+++|+|+++.+++++.|..++                             +
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI  173 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence            46799999999999999999999999999999999999999987764321                             1


Q ss_pred             ----------CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC-cceEEee
Q psy6442          52 ----------NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS-LELIKEH  118 (231)
Q Consensus        52 ----------~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~-~~~~~~~  118 (231)
                                +..|++++.|++|++||.. ......+. +...+.+++|+|+++.++. +.++.+++||... .......
T Consensus       174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~  252 (343)
T 2xzm_R          174 MKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF  252 (343)
T ss_dssp             CCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred             cccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee
Confidence                      1579999999999999953 34444443 5678999999999998765 4688999999843 3333333


Q ss_pred             eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee--ecc-----------CCCCCeeEEEEcCCCCEEEEeeC
Q psy6442         119 KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE--SFK-----------GHFGPIHCVKFSPDGELYASGSE  185 (231)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~--~~~-----------~h~~~V~~v~~spd~~~laS~s~  185 (231)
                      .....+..+.+  +|++.++++ +.|+.+++||+.+++...  .+.           +|...|.+++|+|++++|++|+.
T Consensus       253 ~~~~~v~~v~~--sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  329 (343)
T 2xzm_R          253 DAGSTINQIAF--NPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT  329 (343)
T ss_dssp             ECSSCEEEEEE--CSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred             cCCCcEEEEEE--CCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence            33444555444  888887765 467889999997765433  333           78899999999999999999999


Q ss_pred             CCcEEEEeCCCC
Q psy6442         186 DGTLRLWQTNVG  197 (231)
Q Consensus       186 d~~v~iwd~~~~  197 (231)
                      ||+|++|++.++
T Consensus       330 Dg~v~~w~~~~g  341 (343)
T 2xzm_R          330 DGVIRTFSFETS  341 (343)
T ss_dssp             TSEEEEEEEEEE
T ss_pred             CceEEEEEEEcc
Confidence            999999998665

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=3e-28  Score=214.88  Aligned_cols=185  Identities=18%  Similarity=0.228  Sum_probs=156.5

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE--
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL--   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~--   78 (231)
                      ++.|++|++|+..+++++.+|.+|.+.|++++|+|++               +.|+|++.|++|++||+.++++...+  
T Consensus       166 ~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------~~las~s~D~~i~lwd~~~g~~~~~~~~  230 (611)
T 1nr0_A          166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------SLFASTGGDGTIVLYNGVDGTKTGVFED  230 (611)
T ss_dssp             EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred             EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------CEEEEEECCCcEEEEECCCCcEeeeecc
Confidence            4689999999999999999999999999999999985               45899999999999999998887766  


Q ss_pred             ------EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          79 ------EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        79 ------~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                            .+...+.+++|+|++..++. +.++.+++||..+.+.+..+....  ......+.+  ++..+++++.|+.+++
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF  308 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence                  25578999999999997765 568899999999888776655321  111122222  5667899999999999


Q ss_pred             EeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         150 FDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      ||...+.....+.+|..+|++++|+|++++|+|++.|++|++||+.+++....
T Consensus       309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence            99998888888899999999999999999999999999999999998876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.3e-27  Score=192.00  Aligned_cols=195  Identities=18%  Similarity=0.303  Sum_probs=163.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~   53 (231)
                      ++.||+|++|+..+++.+.++++|.+.|.++.|+|+++.+++++.|..+.                           ++.
T Consensus        83 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS  162 (312)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             ECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence            36799999999999999999999999999999999999999997764321                           677


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce-eEE-EE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ-VHS-AS  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~-~~  128 (231)
                      .|++++.|++|++||+++++.+..+..  ...+..++++|++..++++ .++.+++||..+.+.+..+..+.. ... ..
T Consensus       163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence            899999999999999999888776643  3467889999999987664 578999999998887766543321 111 11


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS--EDGTLRLWQTN  195 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s--~d~~v~iwd~~  195 (231)
                      ....+++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+..
T Consensus       243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            12246788999999999999999999999999999999999999999999999997  69999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=5.9e-27  Score=189.54  Aligned_cols=193  Identities=19%  Similarity=0.257  Sum_probs=160.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~   51 (231)
                      ++.|++|++|+..+|+.+.++++|.+.|.+++|+|+++++++++.|..++                             +
T Consensus        73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred             ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence            46899999999999999999999999999999999999999998764321                             4


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEcc--CCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISR--DGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVH  125 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~  125 (231)
                      +..|+|++.|++|++||++.+.....+..  ...+..+.+.|  ++..++. +.++.|++||..+.+.+..+..+. .+.
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~  232 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS  232 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEE
Confidence            57899999999999999988877666543  34677888876  5555554 568999999999988887776543 454


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC--EEEEeeCCCcEEEEeCCC
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~--~laS~s~d~~v~iwd~~~  196 (231)
                      .+.  ++|++..+++|+.|++|++||..+++.+.++..|...+.+++|+|++.  ++++++.|+ +.+|++..
T Consensus       233 ~~~--~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          233 FAV--FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EEE--ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             EEE--ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            444  488999999999999999999999999999999999999999999875  578777655 88888765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2e-27  Score=193.33  Aligned_cols=187  Identities=10%  Similarity=0.040  Sum_probs=143.1

Q ss_pred             CceeeeccCCCeEee-eecccccEEEEEECCCCceeEecc--------ccccc--cCCCEEEEEeCCCCEEEEeCCCCCc
Q psy6442           6 KPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGA--------ADFQA--KNNTRLISCAEDKTVRLWDVSASAE   74 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~--------~d~~~--~~~~~l~s~s~D~ti~iwd~~~~~~   74 (231)
                      +.++|+..+|+++.+ +.+|.+.|..++++|+|+.+.+..        ..+..  .++..|+|+|.|++|||||+.++++
T Consensus       136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~  215 (356)
T 2w18_A          136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL  215 (356)
T ss_dssp             EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE
Confidence            467888888998888 688999999999999988766411        11222  3568999999999999999999999


Q ss_pred             eEEEEeC----CcceeEEEccCCCEEEE-------------EcCCeEEEEECCCcceEEeeec--c--ceeEEEEEEecC
Q psy6442          75 VQKLEFG----AVPNSLEISRDGTTITV-------------THGSCVTFLDANSLELIKEHKV--P--AQVHSASLLLNS  133 (231)
Q Consensus        75 ~~~~~~~----~~~~~v~~~~~~~~~~~-------------~~~~~i~~~d~~~~~~~~~~~~--~--~~~~~~~~~~~~  133 (231)
                      +.++.-.    ..+.+++|+|++..+++             +.+.++++||..+.+.+.....  +  ........  +.
T Consensus       216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~  293 (356)
T 2w18_A          216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV  293 (356)
T ss_dssp             EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE
T ss_pred             EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc
Confidence            9988632    34667799999987643             2457899999988876654321  1  11111111  22


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCee-EEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH-CVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~-~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      .+.++++++.|++|++||+.+++.++++++|...+. +++|||||++|+||+.|++|||||+
T Consensus       294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            366789999999999999999999999999987665 5899999999999999999999995

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=3.5e-27  Score=205.45  Aligned_cols=186  Identities=25%  Similarity=0.440  Sum_probs=157.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cCCCEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KNNTRL   55 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~~~~l   55 (231)
                      +.||++++|+ .+++++.++.+|.+.|.+++|+|+++.+++++.|..+                          .+++.|
T Consensus       363 ~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (577)
T 2ymu_A          363 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI  441 (577)
T ss_dssp             ETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            5789999999 5689999999999999999999999999998776432                          167899


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEEec
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLLLN  132 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~  132 (231)
                      ++++.|++|++||.. ++.+..+. +...+.+++|+|+++.++.+ .++.|++|+. +.+.++.+..+ ..+..+.+  +
T Consensus       442 ~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~--s  517 (577)
T 2ymu_A          442 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF--S  517 (577)
T ss_dssp             EEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE--C
T ss_pred             EEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEE--c
Confidence            999999999999975 44454444 56788999999999987764 6789999996 44555555443 35655554  8


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      |+++++++++.|+.|++||. +++.+.++.+|.++|++++|+||+++|+|++.|++|++||
T Consensus       518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          518 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999995 6788999999999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=7.5e-27  Score=203.35  Aligned_cols=213  Identities=23%  Similarity=0.421  Sum_probs=169.7

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cCCCEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KNNTRL   55 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~~~~l   55 (231)
                      +.||++++|+.. ++.+..+.+|...|.+++|+|+++.++++..+..+                          .+++.|
T Consensus       322 ~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  400 (577)
T 2ymu_A          322 SDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  400 (577)
T ss_dssp             ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             eCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            579999999954 67778899999999999999999999998765322                          167889


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeec-cceeEEEEEEec
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKV-PAQVHSASLLLN  132 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~  132 (231)
                      ++++.|++|++||.. ++.+..+. +...+.+++++|+++.++. +.++.+++||... +.+..... ...+..+.  ++
T Consensus       401 ~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~--~s  476 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA--FS  476 (577)
T ss_dssp             EEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEE--EC
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEE--Ec
Confidence            999999999999964 45555544 5678899999999998765 4678999999754 44444333 34555544  48


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccC
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNN  212 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~  212 (231)
                      |++.++++++.|+.|++||. +++.+..+.+|..+|++++|+|++++|++++.|++|+|||. +++....+.++.+. ..
T Consensus       477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~-v~  553 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-VW  553 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC-EE
T ss_pred             CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC-EE
Confidence            99999999999999999995 67888999999999999999999999999999999999996 67777777654433 33


Q ss_pred             CCCCCccccc
Q psy6442         213 SLGLDSSGHL  222 (231)
Q Consensus       213 ~~~~~~~~~~  222 (231)
                      .++|.++|..
T Consensus       554 ~~~fs~dg~~  563 (577)
T 2ymu_A          554 GVAFSPDGQT  563 (577)
T ss_dssp             EEEECTTSSC
T ss_pred             EEEEcCCCCE
Confidence            4556666653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=5.2e-27  Score=193.16  Aligned_cols=198  Identities=19%  Similarity=0.229  Sum_probs=150.7

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEecccccccc----------------------------
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------   50 (231)
                      ++.|+++++|+..+++  ++.++.+|.+.|.+++|+|+++++++++.|..+.                            
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            4679999999987774  5788999999999999999999999998764321                            


Q ss_pred             --CCCEEEEEeCCCCEEEEeCCCCCce--EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcc-----------
Q psy6442          51 --NNTRLISCAEDKTVRLWDVSASAEV--QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLE-----------  113 (231)
Q Consensus        51 --~~~~l~s~s~D~ti~iwd~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~-----------  113 (231)
                        ++..|++++.|++|++||...++..  ..+. +...+.+++|+|+++.++. +.++.+++|+.....           
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence              5678999999999999999877533  3332 4568999999999997765 568899999853211           


Q ss_pred             ----eEEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc---------eeeeccCCCCCeeEEEEcCCC-
Q psy6442         114 ----LIKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA---------EIESFKGHFGPIHCVKFSPDG-  177 (231)
Q Consensus       114 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~---------~~~~~~~h~~~V~~v~~spd~-  177 (231)
                          .+.....  ...+..  +.+++++..+++++.|+.|++|+...+.         ..+.+.+|...|++++|+|++ 
T Consensus       239 ~~~~~~~~~~~~h~~~v~~--v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYD--IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEE--EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             CccceeEEecCCCCCcEEE--EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence                1111111  123333  4458888899999999999999986542         123456899999999999997 


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCee
Q psy6442         178 ELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       178 ~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .+||||+.|++|+||++.+++..
T Consensus       317 ~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          317 GLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             TEEEEEETTSCEEEEEECC----
T ss_pred             eEEEEcCCCCcEEEEEecCCCCc
Confidence            59999999999999999888754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=2.4e-27  Score=211.77  Aligned_cols=202  Identities=21%  Similarity=0.262  Sum_probs=161.1

Q ss_pred             CCcCCCceeeeccCC-----CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           1 MCVDGKPMLRQGDTG-----DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-----~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      +|.|++|++|+..++     ...+.+.+|.+.|.+++|+|++               +.|+|++.|++|+|||+.++.+.
T Consensus       401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---------------~~l~sgs~Dg~v~vwd~~~~~~~  465 (694)
T 3dm0_A          401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---------------QFALSGSWDGELRLWDLAAGVST  465 (694)
T ss_dssp             EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEE
T ss_pred             EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC---------------CEEEEEeCCCcEEEEECCCCcce
Confidence            478999999998653     4567899999999999999974               45899999999999999999887


Q ss_pred             EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee----ccceeEEEEEEecCCC--CEEEEecCCCeE
Q psy6442          76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK----VPAQVHSASLLLNSER--PIFVCGGEDLKM  147 (231)
Q Consensus        76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  147 (231)
                      ..+. +...+.+++|+|++..++. +.++.+++||...........    ....+.++.+  ++++  ..+++++.|++|
T Consensus       466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF--SPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE--CSCSSSCEEEEEETTSCE
T ss_pred             eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE--eCCCCcceEEEEeCCCeE
Confidence            7765 5678999999999987654 568999999976543332221    1123555555  5554  689999999999


Q ss_pred             EEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         148 YKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       148 ~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ++||+.+++....+.+|.+.|++++|+|++++|+|++.|++|+|||+.+++.....+.  +.....+.+.++++
T Consensus       544 ~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRY  615 (694)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSS
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCc
Confidence            9999999999999999999999999999999999999999999999999987655543  33344455555544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=1.8e-27  Score=198.39  Aligned_cols=199  Identities=23%  Similarity=0.342  Sum_probs=157.6

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCCEEEEE
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNTRLISC   58 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~~l~s~   58 (231)
                      .+..|+..+..+.++|+||.+.|++++|+|+++.+++++.|..++                           +++.|+++
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            345677777888999999999999999999999999998875432                           67889999


Q ss_pred             eCCCCEEEEeCCCCCc-------eEEE-EeCCcceeEEEccCCC--EEEEEcCCeEEEEECCCcceEEeeec------cc
Q psy6442          59 AEDKTVRLWDVSASAE-------VQKL-EFGAVPNSLEISRDGT--TITVTHGSCVTFLDANSLELIKEHKV------PA  122 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~------~~  122 (231)
                      +.|+++++||+.+...       ...+ .+...+.++.+.|++.  .+..+.++.+++||..+.+.+..+..      ..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            9999999999875321       1111 2345678888988753  44455789999999998877765421      12


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCC-CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYS-TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~-~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      .+..+.+ ..+++.++++|+.|++|++||++ .+..+..+.+|.++|++++|+|++++|+|++.|++|+|||+++++...
T Consensus       207 ~v~~~~~-~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          207 DVLSLSI-NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             CEEEEEE-CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             CeEEEEe-ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            3443333 13378899999999999999997 456778899999999999999999999999999999999999998887


Q ss_pred             eeec
Q psy6442         202 LWKC  205 (231)
Q Consensus       202 ~~~~  205 (231)
                      .+..
T Consensus       286 ~~~~  289 (380)
T 3iz6_a          286 VYNR  289 (380)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            7654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=6.5e-28  Score=196.28  Aligned_cols=181  Identities=19%  Similarity=0.281  Sum_probs=139.8

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~   76 (231)
                      ++.|++|++|+..+++  ++.+|++|.+.|++++|+++             .++..|+||+.|++|++||+.+++.  ..
T Consensus        31 gs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-------------~~~~~l~s~s~D~~v~iWd~~~~~~~~~~   97 (316)
T 3bg1_A           31 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-------------MYGNILASCSYDRKVIIWREENGTWEKSH   97 (316)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-------------GGSSCEEEEETTSCEEEECCSSSCCCEEE
T ss_pred             EeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-------------CCCCEEEEEECCCEEEEEECCCCcceEEE
Confidence            4689999999998775  57889999999999999863             1245689999999999999988743  33


Q ss_pred             EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceE---Eeeec-cceeEEEEEEecCC--------------
Q psy6442          77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELI---KEHKV-PAQVHSASLLLNSE--------------  134 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~--------------  134 (231)
                      .+. +...+.+++|+|+  +..++. +.++.+++||.......   ..... ...+..+.+  +|+              
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~~  175 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW--APAVVPGSLIDHPSGQK  175 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE--CCCCCC------CCSCC
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE--ccccCCccccccccccC
Confidence            332 4568999999998  555554 46789999998764322   11111 123333333  333              


Q ss_pred             ---CCEEEEecCCCeEEEEeCCCc---ceeeeccCCCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCC
Q psy6442         135 ---RPIFVCGGEDLKMYKFDYSTG---AEIESFKGHFGPIHCVKFSPDG----ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       135 ---~~~~~~g~~d~~i~~~d~~~~---~~~~~~~~h~~~V~~v~~spd~----~~laS~s~d~~v~iwd~~~  196 (231)
                         +..+++|+.|++|++||....   ..+..+.+|..+|++++|+|++    .+|+|++.|++|+||++..
T Consensus       176 ~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          176 PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence               468999999999999999754   4677889999999999999986    7999999999999999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.3e-27  Score=191.98  Aligned_cols=180  Identities=19%  Similarity=0.236  Sum_probs=140.1

Q ss_pred             CCcCCCceeeeccCC--CeEeee-ec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC----
Q psy6442           1 MCVDGKPMLRQGDTG--DWIGTF-EG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS----   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g--~~i~~l-~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~----   72 (231)
                      ++.|++|++|+..++  +++..+ .+ |.+.|.+++|+|++               ..|++++.|++|+|||+...    
T Consensus        30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------------~~las~s~D~~v~iw~~~~~~~~~   94 (330)
T 2hes_X           30 GSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------------SLLAAGSFDSTVSIWAKEESADRT   94 (330)
T ss_dssp             EESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS---------------SEEEEEETTSCEEEEEC-------
T ss_pred             EcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC---------------CEEEEEeCCCcEEEEEcccCcCcc
Confidence            468999999999876  456666 45 99999999999974               45899999999999998532    


Q ss_pred             ---CceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCc----ceEEeeec-cceeEEEEEEecCCCCEEEEec
Q psy6442          73 ---AEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSL----ELIKEHKV-PAQVHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        73 ---~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~  142 (231)
                         +++..+. +...+.+++|+|+++.++. +.++.+++||....    +.+..+.. ...+..+.+  +|++.++++++
T Consensus        95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~l~s~s  172 (330)
T 2hes_X           95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSS  172 (330)
T ss_dssp             CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE--CSSSSEEEEEE
T ss_pred             ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE--CCCCCEEEEEc
Confidence               2233332 4568999999999998765 46889999998432    23333332 234555444  88999999999


Q ss_pred             CCCeEEEEeCCCc--ceeeeccCCCCCeeEEEEcCC--CCEEEEeeCCCcEEEEeCCCC
Q psy6442         143 EDLKMYKFDYSTG--AEIESFKGHFGPIHCVKFSPD--GELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       143 ~d~~i~~~d~~~~--~~~~~~~~h~~~V~~v~~spd--~~~laS~s~d~~v~iwd~~~~  197 (231)
                      .|++|++||..++  +.+..+.+|.+.|.+++|+|+  +.+|+|++.|++|+|||+..+
T Consensus       173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            9999999998765  567889999999999999999  679999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.9e-27  Score=191.71  Aligned_cols=202  Identities=18%  Similarity=0.255  Sum_probs=166.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.+++|+|++               ..|++++.|++|++||+.+++++..+..
T Consensus        50 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~  114 (369)
T 3zwl_B           50 CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT---------------KYCVTGSADYSIKLWDVSNGQCVATWKS  114 (369)
T ss_dssp             EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence            3579999999999999999999999999999999974               4589999999999999999999988888


Q ss_pred             CCcceeEEEccCCCEEEEEc-C-----CeEEEEECCCcceEEe-----------eec-cc--eeEEEEEEecCCCCEEEE
Q psy6442          81 GAVPNSLEISRDGTTITVTH-G-----SCVTFLDANSLELIKE-----------HKV-PA--QVHSASLLLNSERPIFVC  140 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~-~-----~~i~~~d~~~~~~~~~-----------~~~-~~--~~~~~~~~~~~~~~~~~~  140 (231)
                      ...+.+++|+|++..++++. +     +.+.+||.........           ... ..  .+..  +.+++++..+++
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~  192 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV--AGWSTKGKYIIA  192 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE--EEECGGGCEEEE
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE--EEEcCCCCEEEE
Confidence            88999999999999887654 4     7999999765432111           111 11  3333  445888999999


Q ss_pred             ecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         141 GGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       141 g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      ++.++.|++||+.+ ...+..+..|..+|.+++|+|++.+|++++.|+.|++||+.+++....+..  +.....+.+.++
T Consensus       193 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~  270 (369)
T 3zwl_B          193 GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL  270 (369)
T ss_dssp             EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred             EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence            99999999999988 678888999999999999999999999999999999999999998877773  333444455554


Q ss_pred             cc
Q psy6442         220 GH  221 (231)
Q Consensus       220 ~~  221 (231)
                      +.
T Consensus       271 ~~  272 (369)
T 3zwl_B          271 KE  272 (369)
T ss_dssp             SS
T ss_pred             Cc
Confidence            44

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=4.6e-27  Score=207.29  Aligned_cols=198  Identities=18%  Similarity=0.234  Sum_probs=153.4

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------CCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------NNT   53 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~~~   53 (231)
                      .+++|+||+..+++.+.+|.+|.+.|.+++|+|+|+++++++.|..++                             +++
T Consensus        37 ~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~  116 (611)
T 1nr0_A           37 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  116 (611)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence            356899999999999999999999999999999988776665542211                             344


Q ss_pred             EEEEEeCC----CCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCE-E-EEEcCCeEEEEECCCcceEEeeecc-ceeE
Q psy6442          54 RLISCAED----KTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT-I-TVTHGSCVTFLDANSLELIKEHKVP-AQVH  125 (231)
Q Consensus        54 ~l~s~s~D----~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~-~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~  125 (231)
                      .|++++.|    ++|++||.  ++....+. +...+.+++|+|++.. + ..+.++.+++||..+.+....+..+ ..+.
T Consensus       117 ~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~  194 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH  194 (611)
T ss_dssp             EEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred             EEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceE
Confidence            55555544    24555553  22222222 3457889999999863 4 3467899999998887776665543 3455


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc-------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .+.+  +|++.++++++.|++|++||..+++.+..+.       +|.++|.+++|+|++++|+|++.|++|+|||+.+++
T Consensus       195 ~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          195 SVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            5444  8999999999999999999999988888774       799999999999999999999999999999999988


Q ss_pred             eeeeee
Q psy6442         199 TYGLWK  204 (231)
Q Consensus       199 ~~~~~~  204 (231)
                      ....+.
T Consensus       273 ~~~~~~  278 (611)
T 1nr0_A          273 VEKTIP  278 (611)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            766554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=9.2e-27  Score=193.32  Aligned_cols=206  Identities=14%  Similarity=0.115  Sum_probs=156.3

Q ss_pred             CCcCCCceeeeccCCCe-Eee--------eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGDTGDW-IGT--------FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-i~~--------l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      ++.|+++|+|+..+++. +..        ...+...+..++|+|||++++             ++|++.|++|+|||+.+
T Consensus       100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la-------------~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A          100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA-------------IASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE-------------EEESCSSCEEEEEETTT
T ss_pred             ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE-------------EEECCCCCEEEEeECCC
Confidence            35688999999765532 221        124456789999999987653             45677899999999999


Q ss_pred             CCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec---cceeEEEEEEecCCCCEEEEecCCC---
Q psy6442          72 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV---PAQVHSASLLLNSERPIFVCGGEDL---  145 (231)
Q Consensus        72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~---  145 (231)
                      ++++..+.+...+.+++|+|+++.++.+.++.+.+|+..+...+.....   ...+..+.  ++|++..+++++.++   
T Consensus       167 ~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          167 LTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKIN--FIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEE--EEETTEEEEEEEESSSCC
T ss_pred             CcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEE--EcCCCCEEEEEecCCcce
Confidence            9999888888889999999999999888788888888776665443221   22344444  478899999887775   


Q ss_pred             -eEEEEeCCCcce----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee-eccCCcccCCCCCCcc
Q psy6442         146 -KMYKFDYSTGAE----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW-KCIEGGLNNSLGLDSS  219 (231)
Q Consensus       146 -~i~~~d~~~~~~----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~  219 (231)
                       .++.|+......    ...+.+|..+|++++|||||++||+|+.|++|+|||+++++..... +++. .....++|.++
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~-~~V~~v~fSpd  323 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS-FAITEVTISPD  323 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS-SCEEEEEECTT
T ss_pred             eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc-CCEEEEEECCC
Confidence             688898865432    4567889999999999999999999999999999999999987654 4332 23455667776


Q ss_pred             ccc
Q psy6442         220 GHL  222 (231)
Q Consensus       220 ~~~  222 (231)
                      |..
T Consensus       324 g~~  326 (365)
T 4h5i_A          324 STY  326 (365)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.4e-28  Score=201.37  Aligned_cols=201  Identities=16%  Similarity=0.194  Sum_probs=149.2

Q ss_pred             CCcCCCceeeeccCC--CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC---ce
Q psy6442           1 MCVDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA---EV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g--~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~---~~   75 (231)
                      ++.||+|++|+..++  +.+.++.+|.+.|.+++|+|++               .+|++++.|++|++||+.+++   ..
T Consensus        29 ~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---------------~~l~s~s~d~~v~vwd~~~~~~~~~~   93 (377)
T 3dwl_C           29 TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---------------NRIVTCSQDRNAYVYEKRPDGTWKQT   93 (377)
T ss_dssp             CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---------------CCEEEEETTSSEEEC------CCCCE
T ss_pred             ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---------------CEEEEEeCCCeEEEEEcCCCCceeee
Confidence            468999999999988  7899999999999999999974               458999999999999999876   33


Q ss_pred             EEE-EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce---EEeeec--cceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          76 QKL-EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL---IKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        76 ~~~-~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      ..+ .+...+.+++|+|++..++. +.++.+++||......   ......  ...+..+.  ++|++.++++++.|+.|+
T Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~~~d~~i~  171 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD--WHPNNVLLAAGCADRKAY  171 (377)
T ss_dssp             EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE--ECTTSSEEEEEESSSCEE
T ss_pred             eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE--EcCCCCEEEEEeCCCEEE
Confidence            332 35678999999999987655 5678999999887652   444443  33455444  488999999999999999


Q ss_pred             EEeCC------------------CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe----eeeeecc
Q psy6442         149 KFDYS------------------TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT----YGLWKCI  206 (231)
Q Consensus       149 ~~d~~------------------~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~----~~~~~~~  206 (231)
                      +||+.                  .++.+..+ +|..+|.+++|+|++++|++++.|++|+|||+.+++.    ...++..
T Consensus       172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (377)
T 3dwl_C          172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS  250 (377)
T ss_dssp             EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred             EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence            99984                  35566777 8999999999999999999999999999999999886    5555543


Q ss_pred             CCcccCCCCCCccc
Q psy6442         207 EGGLNNSLGLDSSG  220 (231)
Q Consensus       207 ~~~~~~~~~~~~~~  220 (231)
                      .. ....++|.++|
T Consensus       251 ~~-~v~~~~~s~~~  263 (377)
T 3dwl_C          251 QL-PLRSLLWANES  263 (377)
T ss_dssp             SS-CEEEEEEEETT
T ss_pred             CC-ceEEEEEcCCC
Confidence            22 12334444444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=7e-27  Score=192.38  Aligned_cols=178  Identities=19%  Similarity=0.282  Sum_probs=142.8

Q ss_pred             CCcCCCceeeeccCCCeEee---eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--e
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT---FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--V   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~---l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~   75 (231)
                      ++.|++|++|+..+++.+..   ..+|.+.|.+++|+|++               .+|++++.|++++|||+..+..  +
T Consensus        34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---------------~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---------------NYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC---------------CEEEEEECCCcEEEEEccCCCeEEE
Confidence            46899999999988865432   36899999999999974               4589999999999999887643  3


Q ss_pred             EEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce---EEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          76 QKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL---IKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        76 ~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ..+. +...+.+++|+|++..++. +.++.+++||......   +..... ...+..+.  ++|++.++++++.|+.|++
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~~p~~~~l~s~s~d~~i~~  176 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV--WHPSQELLASASYDDTVKL  176 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE--ECSSSSCEEEEETTSCEEE
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE--ECCCCCEEEEEeCCCcEEE
Confidence            3443 4568999999999998765 5688999999876533   222222 23454444  4889999999999999999


Q ss_pred             EeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         150 FDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       150 ~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ||..++.  ...++.+|..+|++++|+|++++|++++.|++|+||+..
T Consensus       177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            9998764  457789999999999999999999999999999999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=1.1e-26  Score=192.86  Aligned_cols=176  Identities=13%  Similarity=0.071  Sum_probs=138.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--   79 (231)
                      +.|++||+|+..+++.+.+++ |.+.|.+++|+|+|+               +|++++ |+++++|+..+++......  
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~---------------~l~s~s-~~~~~~~~~~~~~~~~~~~~~  216 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK---------------VVAYIT-GSSLEVISTVTGSCIARKTDF  216 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS---------------EEEEEC-SSCEEEEETTTCCEEEEECCC
T ss_pred             CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc---------------eEEecc-ceeEEEEEeccCcceeeeecC
Confidence            479999999999999999886 888999999999855               467776 5567777777776654432  


Q ss_pred             -eCCcceeEEEccCCCEEEEE-cCC----eEEEEECCCcceE--Ee--eec-cceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          80 -FGAVPNSLEISRDGTTITVT-HGS----CVTFLDANSLELI--KE--HKV-PAQVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                       +...+.+++|+|++..++.+ .++    .+..|+.......  ..  ... ...+.+  +.++|+++++++|+.|++|+
T Consensus       217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS--MDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE--EEECTTSCEEEEEETTSCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe--EEECCCCCceEEEcCCCEEE
Confidence             24568899999999987654 333    5677886554331  11  221 224444  44599999999999999999


Q ss_pred             EEeCCCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         149 KFDYSTGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       149 ~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      +||+.+++++.++ .+|..+|++|+|||||++|||+|.|++||||++..
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999988874 79999999999999999999999999999999843

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=1.2e-26  Score=192.06  Aligned_cols=197  Identities=15%  Similarity=0.153  Sum_probs=155.6

Q ss_pred             CCCceeeeccCCCe----EeeeecccccEEEEEECCCCceeEeccccccc------------------------------
Q psy6442           4 DGKPMLRQGDTGDW----IGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------------   49 (231)
Q Consensus         4 d~~~~~~~~~~g~~----i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------   49 (231)
                      |+++++|+..++..    .....+|.+.|.+++|+|++..++.+ .|..+                              
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-TTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence            77888888877654    34456899999999999998766544 33211                              


Q ss_pred             -cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC-E-EEEEcCCeEEEEECCCcceEEeeecc---c
Q psy6442          50 -KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-T-ITVTHGSCVTFLDANSLELIKEHKVP---A  122 (231)
Q Consensus        50 -~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~-~~~~~~~~i~~~d~~~~~~~~~~~~~---~  122 (231)
                       .++++|++++.|++|++||+.+++++..+. +...+.+++++|++. . +..+.++.+++||.++.+........   .
T Consensus       148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~  227 (357)
T 4g56_B          148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT  227 (357)
T ss_dssp             CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence             167899999999999999999998887775 456889999999875 3 34567899999999887766554332   2


Q ss_pred             eeEEEEEEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCee
Q psy6442         123 QVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       123 ~~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .+..+  .++|+ +.++++|+.|+.|++||+++++.+.++.+|..+|++++|+|++ ++|||++.|++|+|||+++++.+
T Consensus       228 ~v~~v--~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          228 IPTSV--TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             CEEEE--EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             cccch--hhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            34433  44665 5688999999999999999999999999999999999999987 68999999999999999999876


Q ss_pred             eee
Q psy6442         201 GLW  203 (231)
Q Consensus       201 ~~~  203 (231)
                      ...
T Consensus       306 ~~~  308 (357)
T 4g56_B          306 RDL  308 (357)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=7.8e-26  Score=183.41  Aligned_cols=198  Identities=16%  Similarity=0.232  Sum_probs=166.5

Q ss_pred             CCCceeeeccCCCeEee---ee--cccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442           4 DGKPMLRQGDTGDWIGT---FE--GHKGCVWGVDINKDASKAASGAADFQA-----------------------------   49 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~---l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~-----------------------------   49 (231)
                      ||++++|+..+++....   +.  +|.+.|.++.|+|+++.+++++.+..+                             
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  150 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence            89999999988764433   33  899999999999999999988665321                             


Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEE
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSA  127 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~  127 (231)
                      .++..|++++.|++|++||+.+++....+. +...+.+++++|++..++++ .++.+.+||....+.+.....+..+..+
T Consensus       151 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~  230 (337)
T 1gxr_A          151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL  230 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEE
Confidence            166789999999999999999988877765 46678999999999877664 6789999999988887777666666555


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .+  +|++..+++++.++.|++||+.+++. ..+..|..+|.+++|+|++++|++++.|+.|++||+.+++......
T Consensus       231 ~~--s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~  304 (337)
T 1gxr_A          231 GY--CPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             EE--CTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EE--CCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec
Confidence            54  88999999999999999999988764 4667899999999999999999999999999999999998774443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=2e-26  Score=205.79  Aligned_cols=192  Identities=21%  Similarity=0.305  Sum_probs=159.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.+++|+|+++.+++++.|..++                              
T Consensus       448 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred             EeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence            46799999999999999999999999999999999999999998764321                              


Q ss_pred             C--CCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          51 N--NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        51 ~--~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                      +  ...|++++.|++|++||++.+++...+. +...+.+++++|++..++. +.++.|++||..+.+.+........+..
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~  607 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA  607 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEE
T ss_pred             CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEE
Confidence            1  2479999999999999999988877765 5678999999999998765 4688999999999888777666556665


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCC-------------------CCeeEEEEcCCCCEEEEeeCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF-------------------GPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~-------------------~~V~~v~~spd~~~laS~s~d~  187 (231)
                      +++  +|++.+++++. +..|++||+.++..+..+..|.                   ..+++++|||++++|+||+.||
T Consensus       608 ~~~--sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          608 LCF--SPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             EEE--CSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEE--cCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            555  78888777655 5669999999888776654321                   2378999999999999999999


Q ss_pred             cEEEEeCC
Q psy6442         188 TLRLWQTN  195 (231)
Q Consensus       188 ~v~iwd~~  195 (231)
                      +|+||++.
T Consensus       685 ~i~iW~i~  692 (694)
T 3dm0_A          685 VIRVWGIG  692 (694)
T ss_dssp             EEEEEEC-
T ss_pred             eEEEEecc
Confidence            99999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=3.5e-26  Score=191.56  Aligned_cols=197  Identities=17%  Similarity=0.227  Sum_probs=160.0

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc----------------------------cCCC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA----------------------------KNNT   53 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~----------------------------~~~~   53 (231)
                      +.||+|++|+..+++.+.++.+|.+.|.++.|+  ++.+++++.+..+                            .++.
T Consensus       153 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  230 (401)
T 4aez_A          153 LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL  230 (401)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             CCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC
Confidence            568999999999999999999999999999994  5677777655321                            1678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-E---cCCeEEEEECCCcceEEeeeccceeEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-T---HGSCVTFLDANSLELIKEHKVPAQVHSAS  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  128 (231)
                      .|++++.|++|++||+++++....+. +...+.+++|+|++..+++ +   .++.+++||..+.+.+..+..+..+..+.
T Consensus       231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~  310 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI  310 (401)
T ss_dssp             EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            89999999999999999988877764 5678899999998765444 3   37899999999988888877666666555


Q ss_pred             EEecCCCCEEEE--ecCCCeEEEEeCCCccee--eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         129 LLLNSERPIFVC--GGEDLKMYKFDYSTGAEI--ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       129 ~~~~~~~~~~~~--g~~d~~i~~~d~~~~~~~--~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +  ++++..+++  |+.|+.|++||+.++...  ..+.+|...|.+++|+|++.+|++++.|+.|+||++.+++....
T Consensus       311 ~--s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          311 W--SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             E--CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             E--CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence            5  888888888  668999999999886544  44679999999999999999999999999999999999886543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=5.1e-26  Score=190.37  Aligned_cols=179  Identities=20%  Similarity=0.322  Sum_probs=147.9

Q ss_pred             cCCCceeeeccCCCeEeeeecccc------------------cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKG------------------CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTV   64 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~------------------~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti   64 (231)
                      .|+++++|+..+|+.+..+.+|..                  .|.+++|+|++               +.|++++.|++|
T Consensus        83 ~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---------------~~l~s~~~d~~i  147 (393)
T 1erj_A           83 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG---------------KFLATGAEDRLI  147 (393)
T ss_dssp             CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS---------------SEEEEEETTSCE
T ss_pred             cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---------------CEEEEEcCCCeE
Confidence            478999999999999999887753                  38999999974               458999999999


Q ss_pred             EEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEe
Q psy6442          65 RLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCG  141 (231)
Q Consensus        65 ~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g  141 (231)
                      ++||+.+++.+..+. +...+.+++|+|++..++. +.++.+++||..+.+..........+..+.+  +| ++.++++|
T Consensus       148 ~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~  225 (393)
T 1erj_A          148 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGDGKYIAAG  225 (393)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE--CSTTCCEEEEE
T ss_pred             EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE--ECCCCCEEEEE
Confidence            999999988777765 5667999999999987765 5688999999998887766665555555444  66 88899999


Q ss_pred             cCCCeEEEEeCCCcceeeec-------cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         142 GEDLKMYKFDYSTGAEIESF-------KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       142 ~~d~~i~~~d~~~~~~~~~~-------~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +.|+.|++||..++..+..+       .+|...|.+++|+|++++|++++.|++|+|||+++.+
T Consensus       226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            99999999999988877665       6899999999999999999999999999999997653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=193.38  Aligned_cols=197  Identities=15%  Similarity=0.230  Sum_probs=163.0

Q ss_pred             CcCCCceeeeccC----CCeEeeeecccccEEEEEECCC-CceeEeccccccc---------------------------
Q psy6442           2 CVDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQA---------------------------   49 (231)
Q Consensus         2 ~~d~~~~~~~~~~----g~~i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~---------------------------   49 (231)
                      +.||+|++|+..+    .+.+..+.+|.+.|.+++|+|+ ++++++++.|..+                           
T Consensus        86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           86 LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             ccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            5799999999987    4589999999999999999998 8899988654211                           


Q ss_pred             ---------cC-CCEEEEEeCCCCEEEEeCCCCCceEEEEe-------CCcceeEEEccCCC-EEEEE-cCC---eEEEE
Q psy6442          50 ---------KN-NTRLISCAEDKTVRLWDVSASAEVQKLEF-------GAVPNSLEISRDGT-TITVT-HGS---CVTFL  107 (231)
Q Consensus        50 ---------~~-~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~~-~~~---~i~~~  107 (231)
                               .+ +..|++++.|++|++||+.+++.+..+..       ...+.+++|+|++. .++++ .++   .+++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence                     03 57899999999999999999988877765       46789999999974 55544 455   99999


Q ss_pred             ECCCc-ceEEeee--ccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEE
Q psy6442         108 DANSL-ELIKEHK--VPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYAS  182 (231)
Q Consensus       108 d~~~~-~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS  182 (231)
                      |.+.. .....+.  ....+..+.+  +| ++.++++++.|++|++||+.+++.+..+.+|..+|.+++|+|++ .+|++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDW--CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEE--CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred             eCCCCCCCcEEeecCccCceeEEEe--CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence            99875 4444444  2334555444  77 88899999999999999999999999999999999999999998 89999


Q ss_pred             eeCCCcEEEEeCCCCCee
Q psy6442         183 GSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       183 ~s~d~~v~iwd~~~~~~~  200 (231)
                      ++.|+.|+||++.+++..
T Consensus       324 ~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          324 ASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             CCSSSEEEEEESCCCCCS
T ss_pred             EecCCcEEEEEccCCCCC
Confidence            999999999999887643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=5e-26  Score=184.50  Aligned_cols=203  Identities=15%  Similarity=0.248  Sum_probs=158.5

Q ss_pred             CCcCCCceeeeccCC----CeEeeeecccccEEEEEECC--CCceeEecccccccc------------------------
Q psy6442           1 MCVDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK--DASKAASGAADFQAK------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g----~~i~~l~gH~~~V~~~~~~~--~~~~~~s~~~d~~~~------------------------   50 (231)
                      ++.||+|++|+..++    +.+..+.+|.+.|.+++|+|  +++.+++++.|..+.                        
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  108 (351)
T 3f3f_A           29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND  108 (351)
T ss_dssp             EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred             eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc
Confidence            367999999999877    47888899999999999999  589999887653211                        


Q ss_pred             ------------C--CCEEEEEeCCCCEEEEeCCCCCceEEEE--------------eCCcceeEEEccC---CCEEEEE
Q psy6442          51 ------------N--NTRLISCAEDKTVRLWDVSASAEVQKLE--------------FGAVPNSLEISRD---GTTITVT   99 (231)
Q Consensus        51 ------------~--~~~l~s~s~D~ti~iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~---~~~~~~~   99 (231)
                                  +  +..|++++.|++|++||+++++.+..+.              ....+.+++|+|+   +..++++
T Consensus       109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  188 (351)
T 3f3f_A          109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS  188 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred             cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence                        3  7889999999999999998876543322              2346789999997   6666655


Q ss_pred             -cCCeEEEEECCCcce--EEeeec-cceeEEEEEEecCCC----CEEEEecCCCeEEEEeCCCc----------------
Q psy6442         100 -HGSCVTFLDANSLEL--IKEHKV-PAQVHSASLLLNSER----PIFVCGGEDLKMYKFDYSTG----------------  155 (231)
Q Consensus       100 -~~~~i~~~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~----~~~~~g~~d~~i~~~d~~~~----------------  155 (231)
                       .++.+.+++......  ...... ...+..+.+  +|++    .++++++.|+.|++||+..+                
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  266 (351)
T 3f3f_A          189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW--APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF  266 (351)
T ss_dssp             ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE--CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred             cCCCcEEEEccCCCceeeeeecCCCCcceeEEEE--CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence             456776666655543  233322 234555444  7777    78999999999999999764                


Q ss_pred             ------------------------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         156 ------------------------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       156 ------------------------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                                                    +.+..+.+|..+|++++|+|++++|++++.|+.|+||++.+++.+...+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  346 (351)
T 3f3f_A          267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV  346 (351)
T ss_dssp             ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence                                          56677889999999999999999999999999999999999887665554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.2e-26  Score=188.27  Aligned_cols=193  Identities=19%  Similarity=0.195  Sum_probs=139.8

Q ss_pred             CCcCCCceeeecc-------CCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------
Q psy6442           1 MCVDGKPMLRQGD-------TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~-------~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------   49 (231)
                      ++.|++|++|+..       +++.+.++++|.+.|.+++|+|+++++++++.|..+                        
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            4679999999974       346788899999999999999999999999765321                        


Q ss_pred             -------cCCCEEEEEeCCCCEEEEeCCCC--CceEEEE-eCCcceeEEEccC--CCEEE-EEcCCeEEEEECCCc----
Q psy6442          50 -------KNNTRLISCAEDKTVRLWDVSAS--AEVQKLE-FGAVPNSLEISRD--GTTIT-VTHGSCVTFLDANSL----  112 (231)
Q Consensus        50 -------~~~~~l~s~s~D~ti~iwd~~~~--~~~~~~~-~~~~~~~v~~~~~--~~~~~-~~~~~~i~~~d~~~~----  112 (231)
                             .++..|+|++.|++|++||...+  +++..+. +...+.+++|+|+  +..++ .+.++.+++||....    
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~  235 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD  235 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence                   15678999999999999998766  4444443 4568899999998  55554 456899999997543    


Q ss_pred             ----ceEEeee--ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc--ee-eeccCCCC-CeeEEEEcC--CCCEE
Q psy6442         113 ----ELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA--EI-ESFKGHFG-PIHCVKFSP--DGELY  180 (231)
Q Consensus       113 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~--~~-~~~~~h~~-~V~~v~~sp--d~~~l  180 (231)
                          .......  ....+..+.+  ++++ .+++++.|++|++||..+++  .+ ..+.+|.. .|.+++|+|  ++++|
T Consensus       236 ~~~~~~~~~~~~~h~~~v~~v~~--s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l  312 (330)
T 2hes_X          236 QQEWVCEAILPDVHKRQVYNVAW--GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL  312 (330)
T ss_dssp             CEEEEEEEECCSCCSSCEEEEEE--CTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred             cceeEEeeecccccccceEEEEE--cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence                1222222  1234555554  5444 78999999999999987763  23 33467887 899999999  68999


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy6442         181 ASGSEDGTLRLWQTNV  196 (231)
Q Consensus       181 aS~s~d~~v~iwd~~~  196 (231)
                      ||++.|++|+||+++.
T Consensus       313 as~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          313 ATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEETTSEEEEEEC--
T ss_pred             EEecCCCcEEEEEecc
Confidence            9999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=1.4e-26  Score=194.01  Aligned_cols=190  Identities=12%  Similarity=0.160  Sum_probs=158.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      ++.||+|++|+..+++.+..+.+|.+.|.+++|+|++               ..|++++.|++|++||+.+++.+..+. 
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG---------------EALISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             EETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             EECCCCEEEEeCCCcceeeecccccCccEEEEECCCC---------------CEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence            3679999999999999999999999999999999974               458999999999999999998888776 


Q ss_pred             eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc----ceeEEEEE-------------------EecCCC
Q psy6442          80 FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP----AQVHSASL-------------------LLNSER  135 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~-------------------~~~~~~  135 (231)
                      +...+.+++|+|++..++. +.++.+++||..+.+.+..+..+    ..+..+.+                   .+++++
T Consensus       180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            5678999999999997765 46789999999988877766431    22333332                   235788


Q ss_pred             CEEEEecCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCe-eeeeec
Q psy6442         136 PIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKT-YGLWKC  205 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~-~~~~~~  205 (231)
                      ..+++++.|+.|++||+++++.+..+ .+|..+|.+++|+|++. +|++++.|+.|++||+++++. ...+..
T Consensus       260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI  332 (420)
T ss_dssp             EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence            89999999999999999988877665 46889999999999998 999999999999999998753 555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5e-26  Score=182.92  Aligned_cols=212  Identities=19%  Similarity=0.243  Sum_probs=168.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------------CC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------NN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~~   52 (231)
                      ++.||+|++|+..+++.+..+..|.+.|.+++|+|+++.+++++.+..+.                            ++
T Consensus        35 ~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  114 (313)
T 3odt_A           35 VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD  114 (313)
T ss_dssp             EETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEET
T ss_pred             EEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecC
Confidence            46799999999999999999999999999999999999999987764321                            56


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeec--cceeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKV--PAQVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~  127 (231)
                      ..|++++.|++|++||  .++....+. +...+.++.+.| ++..+++ +.++.+++||..  ........  ...+..+
T Consensus       115 ~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~  190 (313)
T 3odt_A          115 GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHL  190 (313)
T ss_dssp             TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEE
T ss_pred             CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEE
Confidence            7899999999999999  445555544 456788999888 7776655 567899999943  33333332  3345544


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                      .+  ++++. +++++.++.|++||+++++.+..+.+|..+|.+++|+|++ .|++++.|+.|++||+.+++....++...
T Consensus       191 ~~--~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          191 AV--VDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             EE--EETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             EE--cCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            44  66666 8899999999999999999999999999999999999999 68999999999999999999888776543


Q ss_pred             CcccCCCCCCcccc
Q psy6442         208 GGLNNSLGLDSSGH  221 (231)
Q Consensus       208 ~~~~~~~~~~~~~~  221 (231)
                      . ....+.+.++++
T Consensus       267 ~-~i~~~~~~~~~~  279 (313)
T 3odt_A          267 I-SIWSVDCMSNGD  279 (313)
T ss_dssp             S-CEEEEEECTTSC
T ss_pred             c-eEEEEEEccCCC
Confidence            2 334455555554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.7e-26  Score=195.66  Aligned_cols=184  Identities=17%  Similarity=0.154  Sum_probs=143.0

Q ss_pred             CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      |+.||+|+||+..+++.  +..+.+|.+.|.+++|+|.              ++.+|+|+|.|++|++||++.+......
T Consensus       138 Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~--------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~  203 (435)
T 4e54_B          138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL--------------NTNQFYASSMEGTTRLQDFKGNILRVFA  203 (435)
T ss_dssp             EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS--------------CTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred             EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC--------------CCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence            46899999999987764  4556799999999999984              2557899999999999999875443332


Q ss_pred             Ee---CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCC-EEEEecCCCeEEEEeC
Q psy6442          79 EF---GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERP-IFVCGGEDLKMYKFDY  152 (231)
Q Consensus        79 ~~---~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~  152 (231)
                      ..   ...+.+++++|++..++++ .++.|++||..... +..+.. ...+..+.+  +|++. ++++++.|+.|++||+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~  280 (435)
T 4e54_B          204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL--NPCCDWFLATASVDQTVKIWDL  280 (435)
T ss_dssp             CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEE--CTTCSSEEEEEETTSBCCEEET
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeee--cCCCceEEEEecCcceeeEEec
Confidence            22   2346789999999988765 57899999986543 333332 334555444  77665 7889999999999999


Q ss_pred             CCcceee---eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         153 STGAEIE---SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       153 ~~~~~~~---~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ++.....   ...+|..+|++++|+|++.+|++++.|++|+|||+.+++...
T Consensus       281 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          281 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             ccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            8765433   346799999999999999999999999999999999877543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=4.9e-26  Score=189.02  Aligned_cols=217  Identities=13%  Similarity=0.133  Sum_probs=166.8

Q ss_pred             CCcCCCceeeeccCCCeEeeee--cccccEEEEEECC-CCceeEecccccccc---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINK-DASKAASGAADFQAK---------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~--gH~~~V~~~~~~~-~~~~~~s~~~d~~~~---------------------------   50 (231)
                      ++.||+|++|+..+++....+.  +|.+.|.+++|+| +++.+++++.|..+.                           
T Consensus        92 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  171 (383)
T 3ei3_B           92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV  171 (383)
T ss_dssp             EEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEE
T ss_pred             EcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEE
Confidence            3679999999999998887775  7999999999999 678999887764321                           


Q ss_pred             --CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC-EEEE-EcCCeEEEEECCC----cceEEeeecc
Q psy6442          51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITV-THGSCVTFLDANS----LELIKEHKVP  121 (231)
Q Consensus        51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~-~~~~~i~~~d~~~----~~~~~~~~~~  121 (231)
                        ++..|++++.|++|++||++ ++.+..+. +...+.+++|+|++. .++. +.++.+++||...    ...+......
T Consensus       172 ~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (383)
T 3ei3_B          172 SVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE  250 (383)
T ss_dssp             ETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence              57889999999999999994 55555554 567899999999998 5554 5678999999887    4455555444


Q ss_pred             ceeEEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCC-----------------CCeeEEEEcCCCCEEEEe
Q psy6442         122 AQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF-----------------GPIHCVKFSPDGELYASG  183 (231)
Q Consensus       122 ~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~-----------------~~V~~v~~spd~~~laS~  183 (231)
                      ..+..+.+  +| ++..+++++.|+.|++||+.++..+..+.+|.                 ..+..++|+|++++  ++
T Consensus       251 ~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~  326 (383)
T 3ei3_B          251 KPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL  326 (383)
T ss_dssp             SCEEEEEE--CTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred             CceEEEEE--cCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence            55655554  88 89999999999999999999887766665543                 23444677777766  78


Q ss_pred             eCCCcEEEEeCCCCCeeeeeeccC-CcccCCCCCCccccc
Q psy6442         184 SEDGTLRLWQTNVGKTYGLWKCIE-GGLNNSLGLDSSGHL  222 (231)
Q Consensus       184 s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  222 (231)
                      +.|++|+|||+.+++....++... ....+.++|.++|.+
T Consensus       327 s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          327 NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred             CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence            899999999999999888877532 333333456666554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=3.4e-25  Score=179.62  Aligned_cols=190  Identities=19%  Similarity=0.208  Sum_probs=162.0

Q ss_pred             CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CC
Q psy6442           2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NN   52 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~   52 (231)
                      +.||++++|+..+++  ....+.+|.+.|.++.|+|+++.+++++.+..+.                           ++
T Consensus       116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             cCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence            578999999998887  6778899999999999999999999887653221                           67


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEe
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLL  131 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  131 (231)
                      ..|++++.|++|++||+++++.+..+.+...+.+++++|++..++++ .++.+.+||....+..........+..+.+  
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~--  273 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF--  273 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE--
T ss_pred             CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEE--
Confidence            79999999999999999999988888888889999999999987765 578999999988776544444445555444  


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                      ++++.++++++.|+.|++||+.+++.+... .|..+|.+++|+|++++|++++.|+.|++|++
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            889999999999999999999988877544 48899999999999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=7.4e-26  Score=186.30  Aligned_cols=201  Identities=16%  Similarity=0.174  Sum_probs=161.4

Q ss_pred             CcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           2 CVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +.||+|++|+..+++  .+.++.+|.+.|.+++|+|++               ..|++++.|++|++||+.+++......
T Consensus        27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~~~~~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---------------NRIVTCGTDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---------------CEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence            579999999999888  899999999999999999974               458899999999999998887554443


Q ss_pred             ---eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcce---EEeeec--cceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          80 ---FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLEL---IKEHKV--PAQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        80 ---~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                         +...+.+++|+|++..++++ .++.+.+||......   ......  ...+..+  .+++++..+++++.|+.|++|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg~i~~~  169 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL--DWHPNSVLLAAGSCDFKCRIF  169 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred             eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE--EEcCCCCEEEEEcCCCCEEEE
Confidence               45678999999999887765 578999999876553   222222  2344444  448899999999999999999


Q ss_pred             eC------------------CCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccC
Q psy6442         151 DY------------------STGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNN  212 (231)
Q Consensus       151 d~------------------~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~  212 (231)
                      |+                  ..++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++++....++.... ...
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~  248 (372)
T 1k8k_C          170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLL  248 (372)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEE
T ss_pred             EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeE
Confidence            95                  35678888989999999999999999999999999999999999998877765332 223


Q ss_pred             CCCCCccc
Q psy6442         213 SLGLDSSG  220 (231)
Q Consensus       213 ~~~~~~~~  220 (231)
                      .+.+.+++
T Consensus       249 ~~~~~~~~  256 (372)
T 1k8k_C          249 AVTFITES  256 (372)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            34444444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.1e-26  Score=190.58  Aligned_cols=202  Identities=16%  Similarity=0.202  Sum_probs=160.5

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-   78 (231)
                      ++.||+|++|+..+++.+..+.+|.+.|.++.|+| +               +..|++++.|++|++||+.+++....+ 
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD---------------PNLLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSC---------------TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCC---------------CCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence            36799999999999999999999999999999999 5               456899999999999999999887776 


Q ss_pred             ---EeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeee-----------------------------ccceeE
Q psy6442          79 ---EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHK-----------------------------VPAQVH  125 (231)
Q Consensus        79 ---~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----------------------------~~~~~~  125 (231)
                         .+...+.+++|+|++..++++ .++.+++||....+......                             ....+.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence               356789999999999877664 57899999998765432221                             223344


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcce--------------eeeccCCCCCeeEEEEcCC--CCEEEEeeCCCcE
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--------------IESFKGHFGPIHCVKFSPD--GELYASGSEDGTL  189 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--------------~~~~~~h~~~V~~v~~spd--~~~laS~s~d~~v  189 (231)
                      .+.+  +  +..+++++.|+.|++||+.++..              +..+.+|..+|.+++|+|+  +++|++++.|+.|
T Consensus       236 ~~~~--~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          236 CVRW--L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             EEEE--E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             EEEE--c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence            4444  3  66899999999999999877643              7778899999999999999  9999999999999


Q ss_pred             EEEeCCCCCeee----eeeccC-CcccCCCCCCcccc
Q psy6442         190 RLWQTNVGKTYG----LWKCIE-GGLNNSLGLDSSGH  221 (231)
Q Consensus       190 ~iwd~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~  221 (231)
                      +|||+.+++...    .+.... ......+++.+++.
T Consensus       312 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          312 YVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             EEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             EEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence            999999987433    455431 23344455555544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.2e-25  Score=184.21  Aligned_cols=206  Identities=15%  Similarity=0.250  Sum_probs=159.3

Q ss_pred             CCcCCCceeeeccC-CCeE-eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDT-GDWI-GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~-g~~i-~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.||+|++|+..+ ++.+ ..+.+|.+.|.++.|+|++               ..|++++.|++|++||+.+++.....
T Consensus        60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~dg~v~iwd~~~~~~~~~~  124 (368)
T 3mmy_A           60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG---------------SKVFTASCDKTAKMWDLSSNQAIQIA  124 (368)
T ss_dssp             EETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC---------------CEEEEEcCCCcEEEEEcCCCCceeec
Confidence            36799999999987 6665 7899999999999999974               45889999999999999999888877


Q ss_pred             EeCCcceeEEE--ccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce--------------------------------
Q psy6442          79 EFGAVPNSLEI--SRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ--------------------------------  123 (231)
Q Consensus        79 ~~~~~~~~v~~--~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------  123 (231)
                      .+...+.+++|  +|++..+++ +.++.+++||..+.+.+..+..+..                                
T Consensus       125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  204 (368)
T 3mmy_A          125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEF  204 (368)
T ss_dssp             ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred             cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence            78889999999  888876655 5688999999887665544432211                                


Q ss_pred             ----------eEEEEEEecCC--CCEEEEecCCCeEEEEeCCCc---ceeeeccCCCC------------CeeEEEEcCC
Q psy6442         124 ----------VHSASLLLNSE--RPIFVCGGEDLKMYKFDYSTG---AEIESFKGHFG------------PIHCVKFSPD  176 (231)
Q Consensus       124 ----------~~~~~~~~~~~--~~~~~~g~~d~~i~~~d~~~~---~~~~~~~~h~~------------~V~~v~~spd  176 (231)
                                .....+...+.  ...+++++.|+.|++|++...   ..+..+.+|..            +|++++|+|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  284 (368)
T 3mmy_A          205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV  284 (368)
T ss_dssp             EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred             hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC
Confidence                      11122211211  122889999999999999876   55667777776            7999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         177 GELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       177 ~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      +++|++++.|+.|+|||+.+++....++... .....++|.++|..
T Consensus       285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~  329 (368)
T 3mmy_A          285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLD-QPISACCFNHNGNI  329 (368)
T ss_dssp             TCCEEEEETTSCEEEEETTTTEEEEECCCCS-SCEEEEEECTTSSC
T ss_pred             CCEEEEEccCCeEEEEECCCCcEEEEecCCC-CCceEEEECCCCCe
Confidence            9999999999999999999998887776532 33445566665544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=2.2e-25  Score=181.34  Aligned_cols=193  Identities=24%  Similarity=0.312  Sum_probs=154.7

Q ss_pred             cCCCeEeeeecccccEEEEEECCC-CceeEecccccccc--------------------------------CCCEEEEEe
Q psy6442          13 DTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAK--------------------------------NNTRLISCA   59 (231)
Q Consensus        13 ~~g~~i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~~--------------------------------~~~~l~s~s   59 (231)
                      ++.++..+|+||++.|++++|+|+ +++++|++.|..++                                ++..|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            455678899999999999999997 57899988764321                                567899999


Q ss_pred             CCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee-c-cceeEEEEEEecCCC
Q psy6442          60 EDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK-V-PAQVHSASLLLNSER  135 (231)
Q Consensus        60 ~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  135 (231)
                      .|+.|++|+............ ...+..+.+++++..++. +.++.+.+||........... . ...+....+...+..
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            999999999988776655543 345677788888876654 567899999987654433221 1 234555555555667


Q ss_pred             CEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .++++++.|+.|++||..+++.+..+.+|.++|++++|+|++++|++++.|++|+|||+++++.....+.
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  255 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG  255 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence            7889999999999999999999999999999999999999999999999999999999999988766654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=187.22  Aligned_cols=196  Identities=16%  Similarity=0.187  Sum_probs=158.2

Q ss_pred             CCcCCCceeeeccCCC-eEeeeecccccEEEEE------ECCCCceeEeccccccc------------------------
Q psy6442           1 MCVDGKPMLRQGDTGD-WIGTFEGHKGCVWGVD------INKDASKAASGAADFQA------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~-~i~~l~gH~~~V~~~~------~~~~~~~~~s~~~d~~~------------------------   49 (231)
                      ++.||+|++|+..+++ .+..+.+|.+.|.+++      |+|+++.+++++.|..+                        
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            3679999999999998 8999999999999995      47889999988664211                        


Q ss_pred             ------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc---CCCEEEEE-cCCeEEEEECCCcc
Q psy6442          50 ------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR---DGTTITVT-HGSCVTFLDANSLE  113 (231)
Q Consensus        50 ------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~-~~~~i~~~d~~~~~  113 (231)
                                  .++..|++++.|++|++||+++++......+...+.+++|+|   ++..++++ .++.+.+||.....
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence                        256789999999999999999998877777788999999999   88876654 57899999987655


Q ss_pred             eEEeee------ccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCc-------------------ceeeeccCCCCC
Q psy6442         114 LIKEHK------VPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTG-------------------AEIESFKGHFGP  167 (231)
Q Consensus       114 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~-------------------~~~~~~~~h~~~  167 (231)
                      ......      ....+..+.+  +|++. ++++++.|+.|++||+..+                   ..+..+.+|..+
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRH--LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP  323 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEE--ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred             cccceeeeccCCCcCCEEEEEE--CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence            433322      2234554444  78887 8999999999999998753                   356778899999


Q ss_pred             eeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCC
Q psy6442         168 IHCVKFSPDGELYA-SGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       168 V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~  198 (231)
                      |++++|+|++++|+ |++.|+.|+|||+.+.+
T Consensus       324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            99999999999888 89999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=3.1e-25  Score=188.58  Aligned_cols=196  Identities=17%  Similarity=0.301  Sum_probs=158.2

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~   51 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|+++.|++++ .+++++.|..+.                             +
T Consensus       138 gs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  216 (464)
T 3v7d_B          138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN  216 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSS
T ss_pred             EcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCC
Confidence            4689999999999999999999999999999999988 788887764321                             4


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEE-----------------------EE-eCCcceeEEEccCCCEEEE-EcCCeEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQK-----------------------LE-FGAVPNSLEISRDGTTITV-THGSCVTF  106 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~-----------------------~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~  106 (231)
                      +..|++++.|++|++||+.++.....                       .. +...+.  ++++++..+++ +.++.+++
T Consensus       217 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~d~~i~v  294 (464)
T 3v7d_B          217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIV  294 (464)
T ss_dssp             CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEEETTEEEEEETTSCEEE
T ss_pred             CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcCCCCEEEEEeCCCeEEE
Confidence            57899999999999999987754321                       11 122333  34677776665 46889999


Q ss_pred             EECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC
Q psy6442         107 LDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE  185 (231)
Q Consensus       107 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~  185 (231)
                      ||..+.+.+..+..+ ..+..+.  +++++..+++|+.|+.|++||+.+++.+.++.+|..+|.+++|+  +.+|++++.
T Consensus       295 wd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          295 WDVAQMKCLYILSGHTDRIYSTI--YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEE--EETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET
T ss_pred             EECCCCcEEEEecCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC
Confidence            999988887776543 3455444  48899999999999999999999999999999999999999998  479999999


Q ss_pred             CCcEEEEeCCCCCeeeee
Q psy6442         186 DGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       186 d~~v~iwd~~~~~~~~~~  203 (231)
                      |++|++||+.+++.....
T Consensus       371 dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          371 DGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             TSEEEEEETTTCCEEEEE
T ss_pred             CCcEEEEECCCCceeeee
Confidence            999999999988755444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.9e-26  Score=197.36  Aligned_cols=211  Identities=13%  Similarity=0.081  Sum_probs=154.8

Q ss_pred             CCcCCCceeeeccCCCeE----eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce-
Q psy6442           1 MCVDGKPMLRQGDTGDWI----GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV-   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i----~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~-   75 (231)
                      ++.|++|+||+..++++.    .++.+|.+.|++++|+|++..         ..++..|+|++.|++|+|||+..+... 
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~---------~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA---------PHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCC---------SSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCC---------CCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            467999999999888753    457788999999999997421         012568999999999999999876432 


Q ss_pred             ----------EEEE-eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcce-EEeeec-cceeEEEEEEecCCC-CEEEEe
Q psy6442          76 ----------QKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL-IKEHKV-PAQVHSASLLLNSER-PIFVCG  141 (231)
Q Consensus        76 ----------~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~~~~g  141 (231)
                                ..+. +...+.+++|++++..+..+.++.|++||..+... ...... ...+..+.+.+++++ .+++++
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                      1222 34678999999876544456789999999986532 223333 235655543457776 889999


Q ss_pred             cCCCeEEEEeCCCcceeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         142 GEDLKMYKFDYSTGAEIESFKGHFG--PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       142 ~~d~~i~~~d~~~~~~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      +.|++|++||+++++.+.++.+|..  .|.+++|+|+++.|++++.|++|+|||+++++....+....+ ....|+|.++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~  408 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRL  408 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSS
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCC
Confidence            9999999999998887777777764  589999999999999999999999999999886555554332 2344555555


Q ss_pred             cc
Q psy6442         220 GH  221 (231)
Q Consensus       220 ~~  221 (231)
                      |.
T Consensus       409 g~  410 (524)
T 2j04_B          409 HP  410 (524)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-25  Score=186.73  Aligned_cols=216  Identities=16%  Similarity=0.175  Sum_probs=170.0

Q ss_pred             CCcCCCceeeec----cCCC------eEeeeec----------ccccEEEEEECCCCceeEeccccccc-----------
Q psy6442           1 MCVDGKPMLRQG----DTGD------WIGTFEG----------HKGCVWGVDINKDASKAASGAADFQA-----------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~----~~g~------~i~~l~g----------H~~~V~~~~~~~~~~~~~s~~~d~~~-----------   49 (231)
                      ++.||+|++|+.    .+|+      ....+..          |.+.|.+++|+|+++.+++++.+..+           
T Consensus        64 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~  143 (425)
T 1r5m_A           64 GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN  143 (425)
T ss_dssp             EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred             ecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence            367899999999    8888      4555554          78899999999999999998776422           


Q ss_pred             ---------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-c---------------ceeEEEccCCCEEEE
Q psy6442          50 ---------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-V---------------PNSLEISRDGTTITV   98 (231)
Q Consensus        50 ---------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-~---------------~~~v~~~~~~~~~~~   98 (231)
                                     .++..|++++.|++|++||+.+++.+..+.... .               +.+++++|++..++.
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (425)
T 1r5m_A          144 VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP  223 (425)
T ss_dssp             EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred             eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence                           167889999999999999999988877765433 2               889999999877777


Q ss_pred             EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442          99 THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG  177 (231)
Q Consensus        99 ~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~  177 (231)
                      +.++.+.+||......+..+..+ ..+..+.+  ++++..+++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  301 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEF--NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD  301 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEE--ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC
Confidence            77899999999887766655432 34554444  7889999999999999999999998889999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442         178 ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       178 ~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                       ++++++.|+.|++||+.+++....+..... ....+.+.+++
T Consensus       302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~  342 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDG  342 (425)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTS
T ss_pred             -EEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCC
Confidence             999999999999999999988877764322 23334444444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-25  Score=187.46  Aligned_cols=215  Identities=12%  Similarity=0.139  Sum_probs=169.2

Q ss_pred             CcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEecccccccc----------------------------
Q psy6442           2 CVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------   50 (231)
                      +.|++|++|+..+++   .+..+ .|.+.|.+++|+|+++++++++.|..+.                            
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            689999999998886   44444 5999999999999999999986652211                            


Q ss_pred             ---C-CCEEEEEeCCCCEEEEeCCCCC------ceEEE----EeCCcceeEEEccC-CCEEEEE-cCCeEEEEECCCcce
Q psy6442          51 ---N-NTRLISCAEDKTVRLWDVSASA------EVQKL----EFGAVPNSLEISRD-GTTITVT-HGSCVTFLDANSLEL  114 (231)
Q Consensus        51 ---~-~~~l~s~s~D~ti~iwd~~~~~------~~~~~----~~~~~~~~v~~~~~-~~~~~~~-~~~~i~~~d~~~~~~  114 (231)
                         + +..|++++.|++|++||+.+++      ....+    .+...+.+++|+|+ +..++++ .++.+++||....+.
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence               3 7889999999999999998876      32222    24567899999999 5666554 578999999998887


Q ss_pred             EEeeecc-------ceeEEEEEEecCCC-CEEEEecCCC---eEEEEeCCCc-ceeeecc-CCCCCeeEEEEcC-CCCEE
Q psy6442         115 IKEHKVP-------AQVHSASLLLNSER-PIFVCGGEDL---KMYKFDYSTG-AEIESFK-GHFGPIHCVKFSP-DGELY  180 (231)
Q Consensus       115 ~~~~~~~-------~~~~~~~~~~~~~~-~~~~~g~~d~---~i~~~d~~~~-~~~~~~~-~h~~~V~~v~~sp-d~~~l  180 (231)
                      +..+..+       ..+..+.  ++|++ .++++++.++   .|++||++++ ..+..+. +|...|.+++|+| ++++|
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVE--WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEE--ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             ceEEeccccccccCCceEEEE--ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            7766553       3444444  47776 6899999998   9999999886 5677888 9999999999999 89999


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442         181 ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       181 aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                      ++++.|++|+|||+.+++....++...+ ....+++.+++
T Consensus       279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~  317 (416)
T 2pm9_A          279 LSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEA  317 (416)
T ss_dssp             EEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTC
T ss_pred             EEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCC
Confidence            9999999999999999998887775433 23444555544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2e-25  Score=186.30  Aligned_cols=217  Identities=14%  Similarity=0.158  Sum_probs=178.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      ++.||+|++|+ .+++.+..+.+|.+.|.++.|+|+++.+++++.+..+.                              
T Consensus       126 ~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (425)
T 1r5m_A          126 GVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG  204 (425)
T ss_dssp             EETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred             EeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence            35789999999 78999999999999999999999999999887653211                              


Q ss_pred             -----------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEe
Q psy6442          51 -----------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKE  117 (231)
Q Consensus        51 -----------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  117 (231)
                                 ++..+++++.|+.|++||+..++.+..+. +...+.+++++|++..++++ .++.+++||....+....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  284 (425)
T 1r5m_A          205 DGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC  284 (425)
T ss_dssp             -CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE
T ss_pred             CcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE
Confidence                       24578999999999999999988877764 45678999999999877665 578999999988777666


Q ss_pred             eec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         118 HKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       118 ~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      +.. ...+..+.+  ++++ .+++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|+|||+.+
T Consensus       285 ~~~~~~~i~~~~~--~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          285 FYGHSQSIVSASW--VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ECCCSSCEEEEEE--ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             ecCCCccEEEEEE--CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            543 334555444  6777 899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC--------------------eeeeeeccCCc-ccCCCCCCcccc
Q psy6442         197 GK--------------------TYGLWKCIEGG-LNNSLGLDSSGH  221 (231)
Q Consensus       197 ~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~  221 (231)
                      ++                    ....++..... ....+.+.+++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred             CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence            87                    66666654333 455566666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=1.1e-25  Score=203.32  Aligned_cols=218  Identities=18%  Similarity=0.257  Sum_probs=176.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------------CCCE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------NNTR   54 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------~~~~   54 (231)
                      +.||+|++|+..+|+.+.++.+|.+.|.++.|+|+++.+++++.+..+.                           ++..
T Consensus        32 ~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  111 (814)
T 3mkq_A           32 LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY  111 (814)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred             eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE
Confidence            5689999999999999999999999999999999999999997764321                           6778


Q ss_pred             EEEEeCCCCEEEEeCCCC-CceEEEE-eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeecc--ceeEEEE
Q psy6442          55 LISCAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKVP--AQVHSAS  128 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~-~~~~~~~-~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~  128 (231)
                      |++++.|++|++||+..+ .....+. +...+.+++|+| ++..+++ +.++.+.+||............+  ..+....
T Consensus       112 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~  191 (814)
T 3mkq_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (814)
T ss_dssp             EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence            999999999999999877 4444443 456789999999 6666554 56789999998776655554432  4555555


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      +.+.+++..+++++.++.|++||..+++.+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++....++... 
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-  270 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-  270 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-
Confidence            5333489999999999999999999999999999999999999999999999999999999999999998877665432 


Q ss_pred             cccCCCCCCccc
Q psy6442         209 GLNNSLGLDSSG  220 (231)
Q Consensus       209 ~~~~~~~~~~~~  220 (231)
                      .....+++.++|
T Consensus       271 ~~v~~~~~~~~~  282 (814)
T 3mkq_A          271 ERSWCIATHPTG  282 (814)
T ss_dssp             SSEEEEEECTTC
T ss_pred             CcEEEEEEccCC
Confidence            223334444444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.3e-26  Score=187.90  Aligned_cols=181  Identities=13%  Similarity=0.072  Sum_probs=144.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC---------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS---------A   71 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~---------~   71 (231)
                      ++.||+|++|+..+|+.+.++.  .+.|.++.|+|.                  +++++.|++|++|+..         +
T Consensus        54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------------------~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------------------IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------------------EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------------------eEEecCCCeEEEEEccCceEEeecCC
Confidence            4689999999999999999887  456666666653                  7899999999999665         4


Q ss_pred             CCceEEEEe--CCcceeEEEcc--CCCEEE-EEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCC
Q psy6442          72 SAEVQKLEF--GAVPNSLEISR--DGTTIT-VTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGED  144 (231)
Q Consensus        72 ~~~~~~~~~--~~~~~~v~~~~--~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d  144 (231)
                      ++.+.....  ...+.+++++|  ++..++ .+.++.+++||..+.+........  ..+..+.  ++|++.++++|+.|
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~--~~pdg~~lasg~~d  191 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV--LHKDSLLLALYSPD  191 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE--ECTTSCEEEEECTT
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE--ECCCCCEEEEEcCC
Confidence            444444443  35789999999  888776 456899999999988776554332  2344444  48999999999999


Q ss_pred             CeEEEEeCCCccee-eeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         145 LKMYKFDYSTGAEI-ESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       145 ~~i~~~d~~~~~~~-~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      +.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++. ++|+|||+++++....++
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeec
Confidence            99999999998877 78888 9999999999999999999994 599999999987654433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=184.31  Aligned_cols=183  Identities=26%  Similarity=0.345  Sum_probs=147.8

Q ss_pred             CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442           1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~   76 (231)
                      ++.||+|++|+..  +++.+..+.+|.+.|.+++|+++.             ++..|++++.|++|++||+.+++  ...
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~   95 (379)
T 3jrp_A           29 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENGRWSQIA   95 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-------------CCCEEEEeccCCEEEEEEcCCCceeEee
Confidence            3579999999997  778889999999999999998751             24568999999999999999886  333


Q ss_pred             EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEe--e-eccceeEEEEEEecC-------------CCC
Q psy6442          77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKE--H-KVPAQVHSASLLLNS-------------ERP  136 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~--~-~~~~~~~~~~~~~~~-------------~~~  136 (231)
                      .+. +...+.+++|+|+  +..+++ +.++.+++||.........  . .....+..+.+  +|             ++.
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~  173 (379)
T 3jrp_A           96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR  173 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE--CCCC----------CTTC
T ss_pred             eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE--cCccccccccccCCCCCC
Confidence            333 4568999999999  776655 5688999999887643222  2 22334555544  66             688


Q ss_pred             EEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCC
Q psy6442         137 IFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .+++++.|+.|++||++++.    .+..+.+|..+|.+++|+|+   +.+|++++.|+.|+|||+.+++
T Consensus       174 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            99999999999999997654    45678899999999999999   8999999999999999998874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=3e-25  Score=185.71  Aligned_cols=182  Identities=15%  Similarity=0.218  Sum_probs=151.1

Q ss_pred             CCcCCCceeeeccCC----CeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---
Q psy6442           1 MCVDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g----~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---   72 (231)
                      ++.||+|++|+....    +.+..+.+|.+.|.+++|+| +               +..|++++.|++|++||+.++   
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---------------~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN---------------DNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC---------------TTEEEEEETTSEEEEEECCTTCCS
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC---------------CCEEEEEeCCCeEEEEEccCCCCc
Confidence            467999999998543    34667889999999999999 5               456899999999999999887   


Q ss_pred             ----CceEEEE-eCCcceeEEEccCC-CEEEE-EcCCeEEEEECCCcceEEeee--c-cceeEEEEEEecCCCCEEEEec
Q psy6442          73 ----AEVQKLE-FGAVPNSLEISRDG-TTITV-THGSCVTFLDANSLELIKEHK--V-PAQVHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        73 ----~~~~~~~-~~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~  142 (231)
                          +.+..+. +...+.+++|+|++ ..++. +.++.+++||..+.+.+..+.  . ...+..+.+  ++++..+++++
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~  195 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSC  195 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE--CTTSSCEEEEE
T ss_pred             cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE--CCCCCEEEEEe
Confidence                4455554 56789999999998 45544 568899999999888777662  2 334554444  88999999999


Q ss_pred             CCCeEEEEeCCCcceeeec-cCCCCC-eeEEEEcCCCCEEEEe---eCCCcEEEEeCCCCCe
Q psy6442         143 EDLKMYKFDYSTGAEIESF-KGHFGP-IHCVKFSPDGELYASG---SEDGTLRLWQTNVGKT  199 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~~~-~~h~~~-V~~v~~spd~~~laS~---s~d~~v~iwd~~~~~~  199 (231)
                      .|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|+++   +.|+.|+|||+++++.
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            9999999999999988888 788876 8999999999999999   7999999999988764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-24  Score=178.15  Aligned_cols=195  Identities=21%  Similarity=0.301  Sum_probs=167.5

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccc-----cc---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD-----FQ---------------------------   48 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d-----~~---------------------------   48 (231)
                      ++.||+|++|+..+++.+..+. |...|.++.|+|+++.++.+..+     ..                           
T Consensus        92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence            3679999999999999999988 89999999999999999887654     11                           


Q ss_pred             -------------ccCCCEEEEEeCCCCEEEEeCCC-CCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCc
Q psy6442          49 -------------AKNNTRLISCAEDKTVRLWDVSA-SAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSL  112 (231)
Q Consensus        49 -------------~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~  112 (231)
                                   ..++..|++++.|++|++||+.+ ++....+. +...+.+++|+|++..++++ .++.+.+||..+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence                         02467899999999999999998 56666665 45688999999999987664 5789999999998


Q ss_pred             ceEEeeeccceeEEEEEEecCCCCEEEEecCCC--------------eEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC
Q psy6442         113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDL--------------KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--------------~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      +.+..+..+..+..+.+  ++++..+++++.++              .+++||..+++.+..+.+|..+|.+++|+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  328 (369)
T 3zwl_B          251 QVLKKYETDCPLNTAVI--TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT  328 (369)
T ss_dssp             CEEEEEECSSCEEEEEE--CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             ceeeeecCCCCceeEEe--cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence            88887776666665554  88999999998887              899999999999999999999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCC
Q psy6442         179 LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~  198 (231)
                      +|++++.|+.|+||++..+.
T Consensus       329 ~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          329 SYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEETTSEEEEEEECHHH
T ss_pred             EEEEEcCCCeEEEEECcccc
Confidence            99999999999999997764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=4.4e-25  Score=177.94  Aligned_cols=182  Identities=15%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc--eE
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE--VQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~--~~   76 (231)
                      ++.|++|++|+..+++  .+.++.+|.+.|.+++|+|+.             .+..|++++.|++|++||++.+..  ..
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-------------~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC-------------CCcEEEEEECCCcEEEEEecCCCceeee
Confidence            4689999999998885  577789999999999999862             145689999999999999987632  22


Q ss_pred             EE-EeCCcceeEEEccCC-------------CEEEE-EcCCeEEEEECCCcc----eEEeeec-cceeEEEEEEecCC--
Q psy6442          77 KL-EFGAVPNSLEISRDG-------------TTITV-THGSCVTFLDANSLE----LIKEHKV-PAQVHSASLLLNSE--  134 (231)
Q Consensus        77 ~~-~~~~~~~~v~~~~~~-------------~~~~~-~~~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~--  134 (231)
                      .+ .+...+.+++|+|+.             +.++. +.++.+++||.+...    ....+.. ...+..+.+  +|+  
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~--sp~~~  217 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL  217 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE--CCCCC
Confidence            22 345678999999973             45544 568899999987644    2333332 234555555  776  


Q ss_pred             -CCEEEEecCCCeEEEEeCCCcc---eeeec--cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         135 -RPIFVCGGEDLKMYKFDYSTGA---EIESF--KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       135 -~~~~~~g~~d~~i~~~d~~~~~---~~~~~--~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                       +.++++++.|++|++||+....   ....+  .+|...|.+++|+|++++||+++.|++|+||+....
T Consensus       218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence             4789999999999999987642   12233  578899999999999999999999999999997643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=2.8e-25  Score=184.68  Aligned_cols=186  Identities=16%  Similarity=0.287  Sum_probs=159.0

Q ss_pred             CCcCCCceeeeccCCCe-----Eeeeecc-----cccEEEEEEC----CCCceeEeccccccccCCCE-EEEEeCCCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDW-----IGTFEGH-----KGCVWGVDIN----KDASKAASGAADFQAKNNTR-LISCAEDKTVR   65 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-----i~~l~gH-----~~~V~~~~~~----~~~~~~~s~~~d~~~~~~~~-l~s~s~D~ti~   65 (231)
                      ++.||+|++|+..+++.     +..+.+|     .+.|.++.|+    |+               +.. |++++.|++|+
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------~~~~l~~~~~dg~i~  151 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL---------------LSHRLVATDVKGTTY  151 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------------------CEEEEEEETTSCEE
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC---------------CceEEEEEeCCCcEE
Confidence            35799999999999987     8999999     5999999999    76               455 89999999999


Q ss_pred             EEeCCC------CCceE-----EEE--------eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeec-----
Q psy6442          66 LWDVSA------SAEVQ-----KLE--------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKV-----  120 (231)
Q Consensus        66 iwd~~~------~~~~~-----~~~--------~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-----  120 (231)
                      +||+..      ++.+.     .+.        +...+.+++|+|++ .++++ .++.+.+||..+.+.+..+..     
T Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence            999988      66655     554        35678999999999 76665 468999999998888777765     


Q ss_pred             --cceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCcceeeeccC-------------CCCCeeEEEEcCCCCEEEE
Q psy6442         121 --PAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTGAEIESFKG-------------HFGPIHCVKFSPDGELYAS  182 (231)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~~~~~~~~~-------------h~~~V~~v~~spd~~~laS  182 (231)
                        ...+..+.+  ++++.++++++.|   +.|++||+.+++.+..+.+             |..+|.+++|+|++++|++
T Consensus       231 ~~~~~i~~i~~--~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          231 NNSNSIRSVKF--SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             CCCCCEEEEEE--CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccCCccceEEE--CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence              445555444  8899999999999   9999999999999999988             9999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCCeeeeee
Q psy6442         183 GSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       183 ~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ++.|+.|+|||+.+++....++
T Consensus       309 ~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE
T ss_pred             EeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999999999888887

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.5e-26  Score=198.26  Aligned_cols=178  Identities=10%  Similarity=0.038  Sum_probs=143.2

Q ss_pred             CCcCCCceeeeccCCCe-----------EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC
Q psy6442           1 MCVDGKPMLRQGDTGDW-----------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV   69 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-----------i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~   69 (231)
                      ++.||+|++|+..+++.           ..++.+|.+.|.+++|+++                ..|++|+.||+|++||+
T Consensus       231 ~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~----------------~~lasgs~DgtV~lWD~  294 (524)
T 2j04_B          231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP----------------TTVVCGFKNGFVAEFDL  294 (524)
T ss_dssp             EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS----------------SEEEEEETTSEEEEEET
T ss_pred             EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC----------------CeEEEEeCCCEEEEEEC
Confidence            36799999999987642           2478899999999999874                25899999999999999


Q ss_pred             CCCCc-eEEEE-eCCcceeE--EEccCC-CEEE-EEcCCeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEE
Q psy6442          70 SASAE-VQKLE-FGAVPNSL--EISRDG-TTIT-VTHGSCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVC  140 (231)
Q Consensus        70 ~~~~~-~~~~~-~~~~~~~v--~~~~~~-~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  140 (231)
                      .++.. ...+. +...+.++  +++|++ ..++ ++.|+++++||+++.+.+.......   .+..+.  ++|++..+++
T Consensus       295 ~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~--fsp~~~~l~s  372 (524)
T 2j04_B          295 TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV--YCPQIYSYIY  372 (524)
T ss_dssp             TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE--EETTTTEEEE
T ss_pred             CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE--eCCCcCeEEE
Confidence            87643 33343 56778888  567877 6544 4678999999998766544332221   233334  4888889999


Q ss_pred             ecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         141 GGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ++.|.+|++||++++..+.++.+|.++|++|+|||++++|+||+.|++|+|||+..
T Consensus       373 ~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999988888999999999999999999999999999999999754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=189.83  Aligned_cols=191  Identities=16%  Similarity=0.229  Sum_probs=149.4

Q ss_pred             CCcCCCceeeeccCCC-----------eEeeeeccc------------ccEEEEEECCCCceeEeccccccccCCCEEEE
Q psy6442           1 MCVDGKPMLRQGDTGD-----------WIGTFEGHK------------GCVWGVDINKDASKAASGAADFQAKNNTRLIS   57 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~-----------~i~~l~gH~------------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s   57 (231)
                      ++.||+|++|+..+++           ++..+.+|.            +.|.+++|+|+++             ...|++
T Consensus        46 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~-------------~~~l~s  112 (447)
T 3dw8_B           46 GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN-------------AAQFLL  112 (447)
T ss_dssp             EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS-------------SSEEEE
T ss_pred             EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC-------------cceEEE
Confidence            4679999999998887           688899998            8899999999741             256899


Q ss_pred             EeCCCCEEEEeCCCCCce---------------------------------------EEE--EeCCcceeEEEccCCCEE
Q psy6442          58 CAEDKTVRLWDVSASAEV---------------------------------------QKL--EFGAVPNSLEISRDGTTI   96 (231)
Q Consensus        58 ~s~D~ti~iwd~~~~~~~---------------------------------------~~~--~~~~~~~~v~~~~~~~~~   96 (231)
                      ++.|++|++||+..+...                                       ..+  .+...+.+++|+|++..+
T Consensus       113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  192 (447)
T 3dw8_B          113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY  192 (447)
T ss_dssp             EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred             eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence            999999999998764321                                       111  245678999999999988


Q ss_pred             EEEcCCeEEEEECCC-cceEEee--------eccceeEEEEEEecCCC-CEEEEecCCCeEEEEeCCCcce----eeecc
Q psy6442          97 TVTHGSCVTFLDANS-LELIKEH--------KVPAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYSTGAE----IESFK  162 (231)
Q Consensus        97 ~~~~~~~i~~~d~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~~~~----~~~~~  162 (231)
                      +.+.++.+++||... ...+...        .....+..+.  ++|++ .++++++.|+.|++||++++..    +..+.
T Consensus       193 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  270 (447)
T 3dw8_B          193 LSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE--FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE  270 (447)
T ss_dssp             EEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEE--ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred             EEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEE--ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence            887889999999984 3333322        1122344444  48887 8999999999999999998876    67788


Q ss_pred             CCCC------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCeeeeeeccC
Q psy6442         163 GHFG------------PIHCVKFSPDGELYASGSEDGTLRLWQTNV-GKTYGLWKCIE  207 (231)
Q Consensus       163 ~h~~------------~V~~v~~spd~~~laS~s~d~~v~iwd~~~-~~~~~~~~~~~  207 (231)
                      +|..            +|.+++|+|++++|++++. +.|+|||+++ ++....++...
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence            8876            8999999999999999999 9999999997 87777776543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=5.4e-25  Score=180.00  Aligned_cols=194  Identities=16%  Similarity=0.201  Sum_probs=155.8

Q ss_pred             cCCCceeeeccCCCeEeee-ecccccEEEEEECCC---CceeEeccccccc-----------------------------
Q psy6442           3 VDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD---ASKAASGAADFQA-----------------------------   49 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l-~gH~~~V~~~~~~~~---~~~~~s~~~d~~~-----------------------------   49 (231)
                      .||+|++|+..+++..... .+|.+.|.++.|+|+   ++.+++++.+..+                             
T Consensus        42 ~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  121 (357)
T 3i2n_A           42 GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG  121 (357)
T ss_dssp             CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred             CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence            3899999999999876554 389999999999998   6899988765321                             


Q ss_pred             -----cCCCEEEEEeCCCCEEEEeCCCCC-ceEEEEe-----CCcceeEE----EccCCCEEEEE-cCCeEEEEECCCcc
Q psy6442          50 -----KNNTRLISCAEDKTVRLWDVSASA-EVQKLEF-----GAVPNSLE----ISRDGTTITVT-HGSCVTFLDANSLE  113 (231)
Q Consensus        50 -----~~~~~l~s~s~D~ti~iwd~~~~~-~~~~~~~-----~~~~~~v~----~~~~~~~~~~~-~~~~i~~~d~~~~~  113 (231)
                           .++..|++++.|++|++||+..++ ....+..     ...+.+++    ++|++..++++ .++.+++||....+
T Consensus       122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence                 145689999999999999999886 5555543     12567777    67898887765 56899999999887


Q ss_pred             eEEeeeccceeEEEEEEecC---CCCEEEEecCCCeEEEEeCCCcceeeecc-----CCCCCeeEEEEcCCCC-EEEEee
Q psy6442         114 LIKEHKVPAQVHSASLLLNS---ERPIFVCGGEDLKMYKFDYSTGAEIESFK-----GHFGPIHCVKFSPDGE-LYASGS  184 (231)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-----~h~~~V~~v~~spd~~-~laS~s  184 (231)
                      ..........+..+.+  +|   ++..+++++.|+.|++||++++..+..+.     +|..+|++++|+|+++ +|++++
T Consensus       202 ~~~~~~~~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          202 LRWETNIKNGVCSLEF--DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             EEEEEECSSCEEEEEE--SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             eeeecCCCCceEEEEc--CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            7665555556665555  77   88899999999999999998776555444     8999999999999998 899999


Q ss_pred             CCCcEEEEeCCCCC
Q psy6442         185 EDGTLRLWQTNVGK  198 (231)
Q Consensus       185 ~d~~v~iwd~~~~~  198 (231)
                      .|+.|+|||++.+.
T Consensus       280 ~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          280 GAGGLHLWKYEYPI  293 (357)
T ss_dssp             TTSEEEEEEEECCS
T ss_pred             CCCcEEEeecCCCc
Confidence            99999999997654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.7e-25  Score=187.62  Aligned_cols=203  Identities=13%  Similarity=0.150  Sum_probs=163.3

Q ss_pred             CCcCCCceeeeccC---CCe---EeeeecccccEEEEEECCCCceeEeccccccc-------------------------
Q psy6442           1 MCVDGKPMLRQGDT---GDW---IGTFEGHKGCVWGVDINKDASKAASGAADFQA-------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~---g~~---i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-------------------------   49 (231)
                      ++.||+|++|+..+   +..   ...+ +|.+.|.+++|+|+++.+++++.|..+                         
T Consensus        82 ~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~  160 (437)
T 3gre_A           82 GSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI  160 (437)
T ss_dssp             EETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             ecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence            46899999999876   542   2223 599999999999999999999776422                         


Q ss_pred             -------------------cCCCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEE-EcCCeEEE
Q psy6442          50 -------------------KNNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTF  106 (231)
Q Consensus        50 -------------------~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~i~~  106 (231)
                                         .++..|++++.|++|++||+++++++..+..   ...+.+++++|++..+++ +.++.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDI  240 (437)
T ss_dssp             EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence                               1377899999999999999999999888864   578999999999998775 46789999


Q ss_pred             EECCCcceEEeeec--cceeEEEEEE--ecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-------------------
Q psy6442         107 LDANSLELIKEHKV--PAQVHSASLL--LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-------------------  163 (231)
Q Consensus       107 ~d~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-------------------  163 (231)
                      ||.+..+.+..+..  ..++..+.+.  +++++.++++++.|+.|++||+.+++.+..+.+                   
T Consensus       241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (437)
T 3gre_A          241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE  320 (437)
T ss_dssp             EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred             EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence            99998888776653  3345544432  246788999999999999999998887666553                   


Q ss_pred             -------CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         164 -------HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       164 -------h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                             |...|++++|+ ++++|++++.|+.|++||+.+++....+..
T Consensus       321 ~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          321 LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence                   55668888999 778999999999999999999987666554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=5.3e-25  Score=184.23  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=157.5

Q ss_pred             CCcCCCceeeeccCC-------CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC
Q psy6442           1 MCVDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g-------~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ++.||+|++|+..++       +.+..+.+|.+.|.+++|+|++              ...|++++.|++|++||+.+++
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--------------~~~l~s~~~dg~i~iwd~~~~~  165 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--------------QNVLLSAGCDNVILVWDVGTGA  165 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--------------TTEEEEEETTSCEEEEETTTTE
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--------------CCEEEEEcCCCEEEEEECCCCC
Confidence            467999999999888       6788899999999999999974              2468999999999999999998


Q ss_pred             ceEEEE---eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEee-eccce--eEEEEEEecCCCCEEEEe---cC
Q psy6442          74 EVQKLE---FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEH-KVPAQ--VHSASLLLNSERPIFVCG---GE  143 (231)
Q Consensus        74 ~~~~~~---~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~g---~~  143 (231)
                      .+..+.   +...+.+++|+|++..+++ +.++.+++||.++.+.+... ..+..  +..+.  +++++.++++|   +.
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~g~~~~~  243 (402)
T 2aq5_A          166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV--FVSEGKILTTGFSRMS  243 (402)
T ss_dssp             EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE--ECSTTEEEEEEECTTC
T ss_pred             ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE--EcCCCcEEEEeccCCC
Confidence            887773   5678999999999987665 46889999999988877766 33322  34333  47889999998   78


Q ss_pred             CCeEEEEeCCCcce-eeec-cCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCe-eeeeeccC-CcccCCCCCCc
Q psy6442         144 DLKMYKFDYSTGAE-IESF-KGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKT-YGLWKCIE-GGLNNSLGLDS  218 (231)
Q Consensus       144 d~~i~~~d~~~~~~-~~~~-~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~-~~~~~~~~-~~~~~~~~~~~  218 (231)
                      ++.|++||+.++.. +... ..|...|.+++|+|++++|+ +++.|+.|++||+.++++ ........ ......+++.+
T Consensus       244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred             CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence            99999999987654 3332 25778899999999999886 556899999999999884 33333221 23334444444


Q ss_pred             cc
Q psy6442         219 SG  220 (231)
Q Consensus       219 ~~  220 (231)
                      ++
T Consensus       324 ~~  325 (402)
T 2aq5_A          324 KR  325 (402)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=3.8e-25  Score=182.78  Aligned_cols=206  Identities=17%  Similarity=0.181  Sum_probs=145.9

Q ss_pred             eeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc------------------------cCCCEE-EEEeCCCC
Q psy6442           9 LRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA------------------------KNNTRL-ISCAEDKT   63 (231)
Q Consensus         9 ~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------~~~~~l-~s~s~D~t   63 (231)
                      +|+..+.+.+.++++|.+.|.+++|+|+++.++++..+...                        .++..+ ++++.|++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccE
Confidence            56677788888899999999999999999999988654210                        123444 67888999


Q ss_pred             EEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCc-ceEEeeeccceeEEEEEEecCCCCEEEE--
Q psy6442          64 VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSL-ELIKEHKVPAQVHSASLLLNSERPIFVC--  140 (231)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  140 (231)
                      |++||..+++++..+.+...+.+++++++.  +++..++.+++||..+. +.+..+..  +.....+  .+  ..++.  
T Consensus        83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~--s~--~~la~~s  154 (355)
T 3vu4_A           83 VHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR--FGGVCEF--SN--GLLVYSN  154 (355)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE--EEEEEEE--ET--TEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc--CCceEEE--Ec--cEEEEeC
Confidence            999999999999998888889999998864  44456789999999877 55555444  2222233  34  34444  


Q ss_pred             ecCCCeEEEEeCCCcc----------------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCeeeee
Q psy6442         141 GGEDLKMYKFDYSTGA----------------EIESFKGHFGPIHCVKFSPDGELYASGSEDGT-LRLWQTNVGKTYGLW  203 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~----------------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~-v~iwd~~~~~~~~~~  203 (231)
                      |+.++.|++||+.++.                .+..+.+|.++|++++|+|++++|||++.|++ |+|||+++++....+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            7899999999998765                26778999999999999999999999999999 999999999988888


Q ss_pred             e-ccCCcccCCCCCCccccc
Q psy6442         204 K-CIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       204 ~-~~~~~~~~~~~~~~~~~~  222 (231)
                      + +........++|.++|+.
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~  254 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSK  254 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCE
T ss_pred             EcCCCCCcEEEEEECCCCCE
Confidence            7 323444555666665543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.5e-25  Score=184.84  Aligned_cols=180  Identities=12%  Similarity=0.268  Sum_probs=146.9

Q ss_pred             eeeccCCCeEeee-ecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC---C---CceEEEEe
Q psy6442           9 LRQGDTGDWIGTF-EGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA---S---AEVQKLEF   80 (231)
Q Consensus         9 ~~~~~~g~~i~~l-~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~---~---~~~~~~~~   80 (231)
                      .|+ .+|+++.++ ++|.+.|.+++|+| ++               ..|+|++.|++|++||+.+   +   ++.....+
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h  110 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGET---------------PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDC  110 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSS---------------CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEEC
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCC---------------CEEEEecCCceEEEeECcccccCcccceeeeccC
Confidence            577 669999999 89999999999999 64               4689999999999999876   3   23455567


Q ss_pred             CCcceeEEEccCCCEEEE-EcCCeEEEEECC---CcceEEeee-------------ccceeEEEEEEecCCCCEEEEecC
Q psy6442          81 GAVPNSLEISRDGTTITV-THGSCVTFLDAN---SLELIKEHK-------------VPAQVHSASLLLNSERPIFVCGGE  143 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~  143 (231)
                      ...+.+++|+|++..+++ +.++.+++||..   ..+......             ....+..+.+..++++..+++++.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            889999999999987665 567999999984   333322211             112233333345678999999999


Q ss_pred             CCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         144 DLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      |+.|++||+++++.+..+.+  |..+|++++|+|++++|++++.|++|+|||+++++....++
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence            99999999999999999988  89999999999999999999999999999999999887775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=1.5e-24  Score=180.23  Aligned_cols=200  Identities=18%  Similarity=0.192  Sum_probs=155.0

Q ss_pred             CCcCCCceeeeccCCCeEeeee-------------cccccEEEEEECC-CCceeEecccccccc----------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-------------GHKGCVWGVDINK-DASKAASGAADFQAK----------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-------------gH~~~V~~~~~~~-~~~~~~s~~~d~~~~----------------   50 (231)
                      ++.||+|++|+..+++....+.             +|.+.|.++.|+| +++.+++++.+..+.                
T Consensus        62 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  141 (408)
T 4a11_B           62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE  141 (408)
T ss_dssp             EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC
Confidence            3679999999999888776664             6999999999999 778898887654221                


Q ss_pred             -------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCE-EE-EEcCCeEEEEECCCcc-
Q psy6442          51 -------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT-IT-VTHGSCVTFLDANSLE-  113 (231)
Q Consensus        51 -------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~-~~~~~~i~~~d~~~~~-  113 (231)
                                   ++..+++++.|+.|++||+.+++.+..+. +...+.+++++|++.. ++ .+.++.+++||.+... 
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~  221 (408)
T 4a11_B          142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG  221 (408)
T ss_dssp             SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred             CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence                         44589999999999999999998887776 4678899999999984 44 4567899999987654 


Q ss_pred             eEEee----------------eccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------------------
Q psy6442         114 LIKEH----------------KVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG----------------------  155 (231)
Q Consensus       114 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~----------------------  155 (231)
                      .+...                .....+..+  .++|++..+++++.|+.|++||+.++                      
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          222 CLITLDQHNGKKSQAVESANTAHNGKVNGL--CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             CSEECCTTTTCSCCCTTTSSCSCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             ccccccccccccceeeccccccccCceeEE--EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence            22221                112234444  44888999999999999999987653                      


Q ss_pred             -------------------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         156 -------------------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       156 -------------------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                                               +.+..+.+|..+|.+++|+|++++|++++.||.|+|||+.+++....
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence                                     34556778999999999999999999999999999999999887643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=7.9e-25  Score=181.97  Aligned_cols=180  Identities=21%  Similarity=0.251  Sum_probs=154.6

Q ss_pred             CCcCCCceeeeccC------CCeEe-----eeec-------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGDT------GDWIG-----TFEG-------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK   62 (231)
Q Consensus         1 ~~~d~~~~~~~~~~------g~~i~-----~l~g-------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~   62 (231)
                      ++.||.|++|+..+      ++.+.     .+.+       |...|.+++|+|++                .|++++.|+
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~l~~~~~dg  207 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----------------LIATGFNNG  207 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----------------EEEEECTTS
T ss_pred             EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc----------------eEEEEeCCC
Confidence            35799999999998      88877     8854       89999999999974                588999999


Q ss_pred             CEEEEeCCCCCceEEEEe-------CCcceeEEEccCCCEEEEE-cC---CeEEEEECCCcceEEeeec-----------
Q psy6442          63 TVRLWDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVT-HG---SCVTFLDANSLELIKEHKV-----------  120 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~-~~---~~i~~~d~~~~~~~~~~~~-----------  120 (231)
                      +|++||+++++.+..+..       ...+.+++|+|++..++++ .+   +.+++||..+.+.+..+..           
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            999999999988888875       6789999999999987765 45   7999999998887776654           


Q ss_pred             ---cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc------CC---------------CCCeeEEEEcCC
Q psy6442         121 ---PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK------GH---------------FGPIHCVKFSPD  176 (231)
Q Consensus       121 ---~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~------~h---------------~~~V~~v~~spd  176 (231)
                         ...+..+.  +++++.++++++.|+.|++||+.+++.+..+.      +|               ..+|++++|+|+
T Consensus       288 ~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          288 FAHSSWVMSLS--FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             BSBSSCEEEEE--ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             cccCCcEEEEE--ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence               23454444  48899999999999999999999999999888      88               999999999999


Q ss_pred             C----------CEEEEeeCCCcEEEEeCCCCC
Q psy6442         177 G----------ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       177 ~----------~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +          ++|++++.|+.|+||++.+|+
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            8          799999999999999998874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=178.51  Aligned_cols=181  Identities=17%  Similarity=0.232  Sum_probs=152.7

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECC-CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--   79 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~-~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--   79 (231)
                      .++++++|+.++++....+++|.+.|.+++|+| +               +..|++++.||+|++||+.++.....+.  
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~---------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   85 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVE---------------GRYMLSGGSDGVIVLYDLENSSRQSYYTCK   85 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTT---------------CCEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCC---------------CCEEEEEcCCCeEEEEECCCCcccceEecc
Confidence            356788999999999999999999999999999 6               4468999999999999999887655544  


Q ss_pred             ------------eCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEe-cCCCCEEEEecCC
Q psy6442          80 ------------FGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLL-NSERPIFVCGGED  144 (231)
Q Consensus        80 ------------~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d  144 (231)
                                  +...+.+++|+| ++..++. +.++.+++||..+.+.......+..+....+.. .+++.++++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (408)
T 4a11_B           86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG  165 (408)
T ss_dssp             EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred             ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC
Confidence                        567899999999 5555554 568899999999988887777666665555532 2255589999999


Q ss_pred             CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC
Q psy6442         145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~  198 (231)
                      +.|++||+.+++.+..+.+|..+|.+++|+|++. +|++++.|+.|++||+++++
T Consensus       166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence            9999999999999999999999999999999998 69999999999999998776

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=6.8e-25  Score=178.39  Aligned_cols=182  Identities=11%  Similarity=0.130  Sum_probs=137.9

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.|++|++|+..+++  .+.++.+|.+.|.+++|+|+.             ++..|++++.|++|++||++.+......
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-------------~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-------------YGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-------------TCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             EECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-------------CCcEEEEEcCCCCEEEEecCCCCCccee
Confidence            4689999999998884  577889999999999999973             2456899999999999999876432111


Q ss_pred             ----EeCCcceeEEEccCC-----------------CEEEE-EcCCeEEEEECCCc---ceEEeeecc-ceeEEEEEEec
Q psy6442          79 ----EFGAVPNSLEISRDG-----------------TTITV-THGSCVTFLDANSL---ELIKEHKVP-AQVHSASLLLN  132 (231)
Q Consensus        79 ----~~~~~~~~v~~~~~~-----------------~~~~~-~~~~~i~~~d~~~~---~~~~~~~~~-~~~~~~~~~~~  132 (231)
                          .+...+.+++|+|+.                 ..++. +.++.+++||....   .....+..+ ..+..+.+  +
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~--s  221 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW--A  221 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC--C
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe--c
Confidence                123567889999873                 34443 46789999998654   233333332 34555555  6


Q ss_pred             CCC----CEEEEecCCCeEEEEeCCCcc----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         133 SER----PIFVCGGEDLKMYKFDYSTGA----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       133 ~~~----~~~~~g~~d~~i~~~d~~~~~----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      |++    ..+++++.|++|++|++.+..    ....+.+|...|.+++|+|++++||+++.|++|+||+....
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            664    789999999999999987621    23345678999999999999999999999999999997643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.2e-25  Score=188.19  Aligned_cols=214  Identities=11%  Similarity=0.112  Sum_probs=140.0

Q ss_pred             CCcCCCceeeeccCCCe-----EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           1 MCVDGKPMLRQGDTGDW-----IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~-----i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      ++.|++||||+..+++.     +.+++||++.|.+++|+|...       .....+++.|+|+|.|++|||||+.++.+.
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~-------~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS-------ADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC-------TTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc-------cccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            46899999999988864     456889999999999987210       011234678999999999999999877655


Q ss_pred             EE-EEeCCcceeEEEccCCC-EEE-EEcCCeEEEEECCCcceEEeeec--------------------------cceeEE
Q psy6442          76 QK-LEFGAVPNSLEISRDGT-TIT-VTHGSCVTFLDANSLELIKEHKV--------------------------PAQVHS  126 (231)
Q Consensus        76 ~~-~~~~~~~~~v~~~~~~~-~~~-~~~~~~i~~~d~~~~~~~~~~~~--------------------------~~~~~~  126 (231)
                      .. ..+...+.+++|+|++. .++ .+.++.+++||..+.+.......                          ...+..
T Consensus       180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~  259 (393)
T 4gq1_A          180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN  259 (393)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred             eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence            44 45678899999999885 344 35688999999876554322110                          011222


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC--------------------CCCEEEEeeCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP--------------------DGELYASGSED  186 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp--------------------d~~~laS~s~d  186 (231)
                      +.+ ..+++..+++++.|+++++||+..+.....+..|...+..+.++|                    ++.++++++.|
T Consensus       260 v~~-~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          260 VRW-IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             EEE-ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             eee-ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence            222 357889999999999999999988877776666666655554444                    23467889999


Q ss_pred             CcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442         187 GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      ++|+|||+.+++......... .....++|.++|+.+
T Consensus       339 g~V~lwd~~~~~~~~~~~~~~-~~V~svafspdG~~L  374 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSIPIQLG-MPIVDFCWHQDGSHL  374 (393)
T ss_dssp             TEEEEEETTCTTCCEEEEECS-SCEEEEEECTTSSEE
T ss_pred             CEEEEEECCCCcEEEEecCCC-CcEEEEEEcCCCCEE
Confidence            999999999998765544432 345567888888765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=3.8e-24  Score=181.86  Aligned_cols=196  Identities=19%  Similarity=0.204  Sum_probs=163.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEEC--CCCceeEecccccccc----------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN--KDASKAASGAADFQAK----------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~--~~~~~~~s~~~d~~~~----------------------------   50 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.+++|+  ++++.+++++.|..+.                            
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            4689999999999999999999999999999998  5778899887653221                            


Q ss_pred             --------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEE
Q psy6442          51 --------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  108 (231)
Q Consensus        51 --------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d  108 (231)
                                          ++..|++++.|++|++||+.+++++..+. +...+.+++++|++..++++ .++.+++||
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd  338 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD  338 (464)
T ss_dssp             CTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence                                35689999999999999999998887775 45678999999999877654 578999999


Q ss_pred             CCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         109 ANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      ..+.+.+..+..+ ..+..+.+  +  +..+++++.|+.|++||+.++.....+. |...+..++|+|+++++++++ |+
T Consensus       339 ~~~~~~~~~~~~h~~~v~~~~~--~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          339 LENGELMYTLQGHTALVGLLRL--S--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             CCCCcEEEEEeCCCCcEEEEEE--c--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CC
Confidence            9988887776543 34544444  3  5789999999999999998877665553 677888999999999999999 89


Q ss_pred             cEEEEeCCCCCeeee
Q psy6442         188 TLRLWQTNVGKTYGL  202 (231)
Q Consensus       188 ~v~iwd~~~~~~~~~  202 (231)
                      .|+|||+.+++....
T Consensus       413 ~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEEETTTCCEEES
T ss_pred             eEEEEECCCCcEEeh
Confidence            999999999987754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=3.6e-25  Score=208.47  Aligned_cols=201  Identities=20%  Similarity=0.315  Sum_probs=169.5

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc-------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA-------------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-------------------------------   49 (231)
                      ++.||+|++|+..+++.+..+.+|.+.|.++.|+|+++.+++++.|..+                               
T Consensus       858 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  937 (1249)
T 3sfz_A          858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV  937 (1249)
T ss_dssp             ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred             EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence            3578999999999999999999999999999999999988888654210                               


Q ss_pred             ---------------------------------------------------------------------------cCCCE
Q psy6442          50 ---------------------------------------------------------------------------KNNTR   54 (231)
Q Consensus        50 ---------------------------------------------------------------------------~~~~~   54 (231)
                                                                                                 .++..
T Consensus       938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A          938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017 (1249)
T ss_dssp             EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC
T ss_pred             EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE
Confidence                                                                                       04567


Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecC
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNS  133 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~  133 (231)
                      |++++.|++|++||+.+++......+...+.+++++|++..+..+.++.+++||..+.+....+..+ ..+..+.  ++|
T Consensus      1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~s~ 1095 (1249)
T 3sfz_A         1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA--ISS 1095 (1249)
T ss_dssp             EEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE--ECS
T ss_pred             EEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE--ECC
Confidence            8888888888888888776655445567788999999988888888999999999888877666543 3444444  488


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      ++..+++++.|++|++||+.++..+..+.+|..+|++++|+|++++|++++.||+|+|||+.+++.....
T Consensus      1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp             SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred             CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999998865443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=6.2e-25  Score=184.06  Aligned_cols=179  Identities=19%  Similarity=0.245  Sum_probs=145.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.||+|++|+..+++.+.++++|.+.|.+++|+|++               ..|++++.|++|++||+++++.+..+..
T Consensus       157 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          157 SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---------------RNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------CEEEEEcCCCcEEEeECCCCceeEEeec
Confidence            4679999999999999999999999999999999974               4589999999999999999888777653


Q ss_pred             C-------------------------CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc--ceeEEEEEEec
Q psy6442          81 G-------------------------AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP--AQVHSASLLLN  132 (231)
Q Consensus        81 ~-------------------------~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~  132 (231)
                      .                         ..+.+++|+|++..++++ .++.+++||..+..........  ..+..+.  ++
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~  299 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT--VD  299 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE--EC
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE--Ee
Confidence            1                         334455667888877664 5789999999888776665433  3454444  48


Q ss_pred             CCCC-EEEEecCCCeEEEEeCCCcce-eeeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         133 SERP-IFVCGGEDLKMYKFDYSTGAE-IESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       133 ~~~~-~~~~g~~d~~i~~~d~~~~~~-~~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      |++. ++++|+.|+.|++||++++.. +..+.+ |..+|.++.+ |++++|++++.|++|+||++...
T Consensus       300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            8888 999999999999999988754 677766 6678888855 57889999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=2.2e-24  Score=179.07  Aligned_cols=178  Identities=17%  Similarity=0.221  Sum_probs=143.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC----CCceE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA----SAEVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~----~~~~~   76 (231)
                      ++.||+|++|+. +++.+.++.+|.+.|.+++|+|++.              ..|++++.|++|++||+++    +.++.
T Consensus       181 ~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~--------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~  245 (383)
T 3ei3_B          181 GDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD--------------WLMATSSVDATVKLWDLRNIKDKNSYIA  245 (383)
T ss_dssp             EETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT--------------TEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred             ECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC--------------CEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence            367899999997 6899999999999999999999753              2589999999999999987    66677


Q ss_pred             EEEeCCcceeEEEcc-CCCEEEEE-cCCeEEEEECCCcceEEeeecc--------cee--------EEEEEEecCCCCEE
Q psy6442          77 KLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDANSLELIKEHKVP--------AQV--------HSASLLLNSERPIF  138 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~  138 (231)
                      .+.+...+.+++|+| ++..++++ .++.+++||..+..........        ..+        ....+.+++++.+ 
T Consensus       246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence            777788999999999 99877654 5789999999876654433211        011        1112233566665 


Q ss_pred             EEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         139 VCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                       +++.|+.|++||+.+++.+..+.+  |...+..++|+|++++|++++ |+.|+|||+++
T Consensus       325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence             778999999999999999999887  567788889999999999998 99999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=1.4e-23  Score=177.84  Aligned_cols=195  Identities=22%  Similarity=0.362  Sum_probs=161.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL   55 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l   55 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|+++.|+  ++.+++++.|..+.                         ++..+
T Consensus       135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l  212 (445)
T 2ovr_B          135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV  212 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE
T ss_pred             EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEE
Confidence            4679999999999999999999999999999997  56888887764322                         56789


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEE-EEEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEec
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLN  132 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~  132 (231)
                      ++++.|++|++||+.+++.+..+. +...+.++++  ++..+ ..+.++.+++||..+.+.+..+..+ ..+..+.+   
T Consensus       213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---  287 (445)
T 2ovr_B          213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---  287 (445)
T ss_dssp             EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---
Confidence            999999999999999998887765 4567788888  45544 4566899999999888777766543 34444433   


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                       ++..+++++.|+.|++||+.+++.+..+.+|...+.++.++  +.+|++++.|+.|++||+.+++....++.
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence             67889999999999999999999999999999999988774  66999999999999999999998877764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=1.3e-23  Score=177.80  Aligned_cols=188  Identities=20%  Similarity=0.416  Sum_probs=155.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL   55 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l   55 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.++.|  +++.+++++.|..+.                         ++..+
T Consensus       149 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l  226 (435)
T 1p22_A          149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM  226 (435)
T ss_dssp             EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred             EeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEE
Confidence            467999999999999999999999999999998  678999988764332                         56789


Q ss_pred             EEEeCCCCEEEEeCCCCCceEE---E-EeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQK---L-EFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASL  129 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  129 (231)
                      ++++.|++|++||+.++.....   + .+...+.++++  ++..+++ +.++.+++||..+.+.+..+..+ ..+..+.+
T Consensus       227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  304 (435)
T 1p22_A          227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  304 (435)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence            9999999999999998776532   2 23456778887  5555554 56889999999998887776643 34444333


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                          ++..+++|+.|+.|++||+.+++.+.++.+|..+|.+++|  ++.+|++++.||.|+|||+.+++
T Consensus       305 ----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          305 ----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             ----ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             ----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence                4678999999999999999999999999999999999999  78899999999999999987665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=2.4e-23  Score=174.29  Aligned_cols=199  Identities=17%  Similarity=0.227  Sum_probs=158.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++.||+|++|+..+|+.+..+.. |.+.|.+++|+|++               ..|++++.||+|++||+.+++.+..+.
T Consensus       109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A          109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG---------------SFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC---------------CEEEEECCCCeEEEEECcCCeEEEEec
Confidence            36799999999999999888776 89999999999974               458899999999999999998887775


Q ss_pred             -eCCcceeEEEccCCCEEE-EEcCCeEEEEECCC-cceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy6442          80 -FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANS-LELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG  155 (231)
Q Consensus        80 -~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~  155 (231)
                       +...+.+++|++  ..++ .+.++.+.+||.+. ......... ...+..+.  +++++..+++++.|+.|++||+.++
T Consensus       174 ~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~~  249 (401)
T 4aez_A          174 GHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA--WRSDGLQLASGGNDNVVQIWDARSS  249 (401)
T ss_dssp             CCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE--ECTTSSEEEEEETTSCEEEEETTCS
T ss_pred             CCCCceEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE--EcCCCCEEEEEeCCCeEEEccCCCC
Confidence             456788999944  4444 45689999999984 444444433 33455444  4889999999999999999999999


Q ss_pred             ceeeeccCCCCCeeEEEEcCCC-CEEEEee--CCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDG-ELYASGS--EDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~-~~laS~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                      ..+..+.+|..+|.+++|+|++ .++++++  .|+.|++||+.+++....++.  +.....+.+.+++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~  315 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHS  315 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSS
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCC
Confidence            9999999999999999999976 5677765  799999999999998877753  2333444444443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.2e-24  Score=179.46  Aligned_cols=186  Identities=16%  Similarity=0.250  Sum_probs=151.6

Q ss_pred             CcCCCceeeeccCCC---eEeeeecc------------------------------------------------------
Q psy6442           2 CVDGKPMLRQGDTGD---WIGTFEGH------------------------------------------------------   24 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~---~i~~l~gH------------------------------------------------------   24 (231)
                      +.++.|++|+..+|+   .+.++..|                                                      
T Consensus        22 ~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (450)
T 2vdu_B           22 IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPI  101 (450)
T ss_dssp             EETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------------------CC
T ss_pred             EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCCCCcc
Confidence            457899999999999   78777744                                                      


Q ss_pred             cccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC--CCCceEEEE---eCCcceeEEEccCCCEEEEE
Q psy6442          25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS--ASAEVQKLE---FGAVPNSLEISRDGTTITVT   99 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~--~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~   99 (231)
                      .+.|.+++|+|+++.+              +++++.|++|++||+.  .++++..+.   +...+.+++|+|++..++++
T Consensus       102 ~~~v~~~~~s~d~~~l--------------~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B          102 YSYIRNLRLTSDESRL--------------IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             CCCEEEEEECTTSSEE--------------EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEcCCCCEE--------------EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence            3369999999975432              4889999999999999  788877763   45778999999999987765


Q ss_pred             -cCCeEEEEECCCcceEE----eeec-cceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCee
Q psy6442         100 -HGSCVTFLDANSLELIK----EHKV-PAQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIH  169 (231)
Q Consensus       100 -~~~~i~~~d~~~~~~~~----~~~~-~~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V~  169 (231)
                       .++.+.+|+..+.....    .+.. ...+..+.+  +|+   +.++++++.|+.|++||+.++..+.. +.+|..+|.
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~  245 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL--IKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS  245 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE--EECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEE--cCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence             56899999987765432    2222 234555555  667   88999999999999999999888877 569999999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         170 CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       170 ~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      +++|+ ++.+|++++.|++|+|||+.+++....++
T Consensus       246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            99999 99999999999999999999999877665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=1.2e-24  Score=177.17  Aligned_cols=186  Identities=13%  Similarity=0.165  Sum_probs=150.9

Q ss_pred             CCcCCCceeeec-cCCCeEeeeec--ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC------
Q psy6442           1 MCVDGKPMLRQG-DTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA------   71 (231)
Q Consensus         1 ~~~d~~~~~~~~-~~g~~i~~l~g--H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~------   71 (231)
                      ++.||+|++|+. .+++. ..+.+  |.+.|.++.|+| ++               .|++++.|++|++||+++      
T Consensus        75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~---------------~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD---------------KLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT---------------EEEEEETTSEEEEECHHHHTTBCE
T ss_pred             EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC---------------EEEEEcCCCeEEEEcccccccccc
Confidence            357999999998 77765 67888  999999999988 44               478999999999999987      


Q ss_pred             ---CCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCC-cceE-Eeee--ccceeEEEEEEecC-CCCEEEEecC
Q psy6442          72 ---SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS-LELI-KEHK--VPAQVHSASLLLNS-ERPIFVCGGE  143 (231)
Q Consensus        72 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~-~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~g~~  143 (231)
                         ++++..+.+...+.+++++|++ .+..+.++.+.+||... .... ....  ....+..+  .+++ ++..+++++.
T Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          138 AVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV--ALLPKEQEGYACSSI  214 (342)
T ss_dssp             EEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE--EECSGGGCEEEEEET
T ss_pred             cccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE--EECCCCCCEEEEEec
Confidence               6666566667789999999988 55566788999999887 4432 2222  23344444  4488 8899999999


Q ss_pred             CCeEEEEeCCCc------ceeeeccCCCC---------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         144 DLKMYKFDYSTG------AEIESFKGHFG---------PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       144 d~~i~~~d~~~~------~~~~~~~~h~~---------~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      ++.+++|++...      +.+..+.+|..         +|.+++|+|++++|++++.|+.|+|||+.+++....++..
T Consensus       215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            999999999876      66777877765         9999999999999999999999999999999887776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.9e-24  Score=169.45  Aligned_cols=193  Identities=19%  Similarity=0.236  Sum_probs=156.1

Q ss_pred             CCcCCCceeeeccC---CCeEeeeecccccEEEEEECCCCceeEeccccccc--------------------------cC
Q psy6442           1 MCVDGKPMLRQGDT---GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA--------------------------KN   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~---g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~--------------------------~~   51 (231)
                      ++.||.+++|+...   ++.+..+.+|.+.|.++.|  +++.+++++.+..+                          .+
T Consensus        77 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           77 GGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             EETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred             ecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCC
Confidence            36789999888744   4678889999999999999  56688887665321                          26


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQVHSAS  128 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  128 (231)
                      +..+++++.|++|++||.  ++....+.  +...+.+++++|++..+..+.++.+++||..+.+.+..+..+ ..+..+.
T Consensus       155 ~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  232 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK  232 (313)
T ss_dssp             TTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence            889999999999999993  34444443  456789999999999666677899999999988887776643 3555554


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      +  +|++ .+++++.|+.|++||+.+++.+..+..|..+|.+++|+|+++ +++++.|+.|+||++.+++...
T Consensus       233 ~--~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          233 L--LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             E--CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             E--ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            4  7777 588999999999999999999999999999999999999998 5679999999999999877543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=9.3e-25  Score=178.97  Aligned_cols=179  Identities=16%  Similarity=0.298  Sum_probs=139.0

Q ss_pred             CCcCCCceeeeccCCCeEeee---ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l---~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      ++.||+|++|+..+++.+..+   .+|.+.|.++.|+|++               ..|++++.|++|++||+++++....
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~l~~~~~dg~i~i~d~~~~~~~~~  198 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG---------------EKIMSCGMDHSLKLWRINSKRMMNA  198 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEESCSHHHHHH
T ss_pred             EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC---------------CEEEEecCCCCEEEEECCCCccccc
Confidence            367999999999999999988   7899999999999974               4589999999999999987654322


Q ss_pred             EE-----------------------------eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce-------------
Q psy6442          78 LE-----------------------------FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL-------------  114 (231)
Q Consensus        78 ~~-----------------------------~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~-------------  114 (231)
                      +.                             +...+.+++++  +..+++ +.++.+++||......             
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  276 (366)
T 3k26_A          199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT  276 (366)
T ss_dssp             HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred             cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence            21                             45678899998  445544 4678999999876543             


Q ss_pred             -EEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce----eeeccCC--CCCeeEEEEcCCCCEEEEeeCC
Q psy6442         115 -IKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE----IESFKGH--FGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       115 -~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~----~~~~~~h--~~~V~~v~~spd~~~laS~s~d  186 (231)
                       +..+..+ ..+..+.+..++++.++++++.|+.|++||+.+++.    +..+.+|  ..+|++++|+|++++|++++.|
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             EEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             eeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence             2222222 234444443333399999999999999999988753    3467777  7999999999999999999999


Q ss_pred             CcEEEEeCCC
Q psy6442         187 GTLRLWQTNV  196 (231)
Q Consensus       187 ~~v~iwd~~~  196 (231)
                      +.|+|||+.+
T Consensus       357 g~i~iwd~~~  366 (366)
T 3k26_A          357 ASIWRWDRLR  366 (366)
T ss_dssp             SEEEEEEC--
T ss_pred             CEEEEEEecC
Confidence            9999999853

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1e-23  Score=173.08  Aligned_cols=180  Identities=9%  Similarity=0.053  Sum_probs=140.1

Q ss_pred             CCcCCCceeeecc---------CCCeEeeee-cccccEEEEEECC--CCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442           1 MCVDGKPMLRQGD---------TGDWIGTFE-GHKGCVWGVDINK--DASKAASGAADFQAKNNTRLISCAEDKTVRLWD   68 (231)
Q Consensus         1 ~~~d~~~~~~~~~---------~g~~i~~l~-gH~~~V~~~~~~~--~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd   68 (231)
                      ++.|+++++|+..         +++.+..+. +|.+.|.++.|+|  +               +..+++++.|++|++||
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN---------------TEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC------------------CCEEEEEETTCCEEEEE
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC---------------CCEEEEEeCCCcEEEEE
Confidence            4689999999654         666566655 7889999999999  6               45689999999999999


Q ss_pred             CCCCCceEEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceE-Eeeec--cceeEEEEEEecCCCCEEEEec
Q psy6442          69 VSASAEVQKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELI-KEHKV--PAQVHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        69 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~  142 (231)
                      +.++++.....  ....+.+++|+|++..+++ +.++.|++||.++.+.+ ..+..  ..++..+.+  +|++..+++++
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~f--s~~g~~l~s~~  233 (343)
T 3lrv_A          156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF--ADNGYWMVVEC  233 (343)
T ss_dssp             SSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEE--CTTSSEEEEEE
T ss_pred             CCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEE--eCCCCEEEEEe
Confidence            99988865543  2346899999999998887 46889999999988766 55554  345655554  89999999999


Q ss_pred             CCCeEEEEeCCCcceeeeccC---CCCCee--EEEEcCCCCEEEEeeC-CCcEEEEeCCCCC
Q psy6442         143 EDLKMYKFDYSTGAEIESFKG---HFGPIH--CVKFSPDGELYASGSE-DGTLRLWQTNVGK  198 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~~~~~---h~~~V~--~v~~spd~~~laS~s~-d~~v~iwd~~~~~  198 (231)
                      .+ .|++||+++++.+..+..   |..++.  +++|+|++++|++++. |+.|+||++..++
T Consensus       234 ~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          234 DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            55 999999998876555443   555555  5999999999999998 9999999986654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=1.7e-23  Score=177.06  Aligned_cols=195  Identities=16%  Similarity=0.238  Sum_probs=156.4

Q ss_pred             CCcCCCceeeeccC----------CCeEeeeecccccEEEEEECCCCc-eeEeccccccc--------------------
Q psy6442           1 MCVDGKPMLRQGDT----------GDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQA--------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~----------g~~i~~l~gH~~~V~~~~~~~~~~-~~~s~~~d~~~--------------------   49 (231)
                      ++.||+|++|+..+          ++.+.++.+|.+.|++++|+|++. .+++++.|..+                    
T Consensus       147 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  226 (430)
T 2xyi_A          147 KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI  226 (430)
T ss_dssp             ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred             ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence            36799999999976          678889999999999999999987 88888654211                    


Q ss_pred             ---------------cCCCEEEEEeCCCCEEEEeCCCC---CceEEEE-eCCcceeEEEccCCCE-EEE-EcCCeEEEEE
Q psy6442          50 ---------------KNNTRLISCAEDKTVRLWDVSAS---AEVQKLE-FGAVPNSLEISRDGTT-ITV-THGSCVTFLD  108 (231)
Q Consensus        50 ---------------~~~~~l~s~s~D~ti~iwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~-~~~-~~~~~i~~~d  108 (231)
                                     .++..|++++.|++|++||++.+   +....+. +...+.+++|+|++.. +++ +.++.|++||
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd  306 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD  306 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence                           14578999999999999999977   4555553 5678999999999873 433 5678999999


Q ss_pred             CCC-cceEEeeec-cceeEEEEEEecCCC-CEEEEecCCCeEEEEeCCC--------------cceeeeccCCCCCeeEE
Q psy6442         109 ANS-LELIKEHKV-PAQVHSASLLLNSER-PIFVCGGEDLKMYKFDYST--------------GAEIESFKGHFGPIHCV  171 (231)
Q Consensus       109 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~g~~d~~i~~~d~~~--------------~~~~~~~~~h~~~V~~v  171 (231)
                      .+. ...+..+.. ...+..+.+  +|++ .++++++.|++|++||+..              .+.+..+.+|...|+++
T Consensus       307 ~~~~~~~~~~~~~h~~~v~~i~~--sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  384 (430)
T 2xyi_A          307 LRNLKLKLHSFESHKDEIFQVQW--SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  384 (430)
T ss_dssp             TTCTTSCSEEEECCSSCEEEEEE--CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred             CCCCCCCeEEeecCCCCEEEEEE--CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence            987 344444443 335555544  7777 4789999999999999976              35677788999999999


Q ss_pred             EEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442         172 KFSPDGE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       172 ~~spd~~-~laS~s~d~~v~iwd~~~~  197 (231)
                      +|+|++. +|++++.|+.|+||++...
T Consensus       385 ~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          385 SWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999998 9999999999999998653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.92  E-value=2.2e-23  Score=176.56  Aligned_cols=212  Identities=21%  Similarity=0.371  Sum_probs=166.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRL   55 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l   55 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.++.|+  ++.+++++.|..+.                         ++..+
T Consensus       175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l  252 (445)
T 2ovr_B          175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV  252 (445)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred             EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEE
Confidence            4679999999999999999999999999999995  45688877654321                         57789


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEEec
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLLLN  132 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~  132 (231)
                      ++++.|++|++||+.+++++..+. +...+.++.+  ++..+++ +.++.+++||..+.+.+..+..+. .+..+.    
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~----  326 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME----  326 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE----
T ss_pred             EEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE----
Confidence            999999999999999988887775 4567788888  5666554 568999999999888777665433 333322    


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeeccC---CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec----
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKG---HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC----  205 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~---h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~----  205 (231)
                      .++..+++++.|+.|++||+.+++.+..+.+   |..+|.+++|+  +++|++++.||.|+|||+.+++....+..    
T Consensus       327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  404 (445)
T 2ovr_B          327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  404 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccC
Confidence            2466899999999999999999998888876   88999999996  57999999999999999999998776631    


Q ss_pred             cCCcccCCCCCCccccc
Q psy6442         206 IEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       206 ~~~~~~~~~~~~~~~~~  222 (231)
                      ........+++.++|.+
T Consensus       405 ~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          405 GSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             GGTCEEEEEEECSSEEE
T ss_pred             CCCceEEEEEecCCEEE
Confidence            12333444555555443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.6e-24  Score=194.70  Aligned_cols=181  Identities=12%  Similarity=0.115  Sum_probs=149.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      ++.||+|+||+..+++.+..+. |.+.|.++.|+| ++               +|++++.|++|++||+.+++++..+.+
T Consensus        35 gs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~---------------~L~S~s~D~~v~lWd~~~~~~~~~~~~   97 (902)
T 2oaj_A           35 ATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI---------------YLVVINAKDTVYVLSLYSQKVLTTVFV   97 (902)
T ss_dssp             EETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT---------------EEEEEETTCEEEEEETTTCSEEEEEEC
T ss_pred             EeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC---------------EEEEEECcCeEEEEECCCCcEEEEEcC
Confidence            4679999999988887776654 889999999998 43               589999999999999999999888887


Q ss_pred             CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEe-----------ee-ccceeEEEEEEecCC-CCEEEEecCCCe
Q psy6442          81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKE-----------HK-VPAQVHSASLLLNSE-RPIFVCGGEDLK  146 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~-~~~~~~g~~d~~  146 (231)
                      ...+.+++|+|++..++++ .++.+++||.........           .. ...++..+.+  +|+ ...+++|+.|+.
T Consensus        98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~  175 (902)
T 2oaj_A           98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVT  175 (902)
T ss_dssp             SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCE
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCc
Confidence            8889999999999988765 578999999987664311           01 1124555554  664 467889999999


Q ss_pred             EEEEeCCCcceeeeccCC------------------CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         147 MYKFDYSTGAEIESFKGH------------------FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h------------------~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      | +||+++++.+..+.+|                  ...|++++|+|+|.+|++++.|++|+|||+++++...
T Consensus       176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            9 9999998888777665                  5789999999999999999999999999999988764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=6.5e-23  Score=170.33  Aligned_cols=200  Identities=16%  Similarity=0.198  Sum_probs=162.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.|++|++|+..+++++..+.+|.. +.++.|+|+++.+              +++++.|++|++||+.+++.+..+...
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l--------------~~~~~~d~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKV--------------YVANAHSNDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEE--------------EEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEE--------------EEECCCCCeEEEEECCCCeEEEEEECC
Confidence            6799999999999999999998755 8999999986542              467889999999999999998888888


Q ss_pred             CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCCccee
Q psy6442          82 AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~~~  158 (231)
                      ..+..++++|+++.++++.  ++.+.+||..+.+.+.....+..+..+.  +++++..+ ++++.++.|++||+.+++.+
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            8999999999999876543  5899999999888877766655554444  48888866 78888999999999999888


Q ss_pred             eeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         159 ESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ..+..|. .+.+++|+|++++| ++++.|+.|++||+++++.......  ......+++.++|.
T Consensus       152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGT  212 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSS
T ss_pred             EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCC
Confidence            8887664 56999999999876 7888999999999999987766653  23334455555543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=1.5e-23  Score=177.36  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=151.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc----------------------------CC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----------------------------NN   52 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~----------------------------~~   52 (231)
                      ++.||+|++|+..+++.+.++.+|.+.|.++.|++  +.+++++.|..+.                            ++
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  266 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  266 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC
Confidence            46799999999999999999999999999999975  4778776653221                            56


Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVP-AQVHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  129 (231)
                      ..|++++.|++|++||+.+++.+..+. +...+.++++.  +..++ .+.++.+++||..+.+.+..+..+ ..+..+.+
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            789999999999999999999888876 45667788774  45554 456889999999988887776543 34444433


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcc---------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGA---------EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~---------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                          ++..+++|+.|+.|++||+.++.         .+..+.+|.++|.+++|  ++.+|++++.||+|+|||+.+....
T Consensus       345 ----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          345 ----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             ----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             ----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence                67889999999999999997665         78889999999999999  7789999999999999999887644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.1e-24  Score=190.83  Aligned_cols=183  Identities=25%  Similarity=0.341  Sum_probs=147.8

Q ss_pred             CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC--ceE
Q psy6442           1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA--EVQ   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~--~~~   76 (231)
                      ++.||+|++|+..  +++.+.++.+|.+.|.+++|+++.             ++..|++++.||+|++||+.+++  ...
T Consensus        27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-------------~~~~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-------------SCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-------------CCCEEEEEeCCCeEEEEECCCCcccccc
Confidence            4679999999987  667899999999999999999862             24568999999999999999876  333


Q ss_pred             EEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEe--e-eccceeEEEEEEecC-------------CCC
Q psy6442          77 KLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKE--H-KVPAQVHSASLLLNS-------------ERP  136 (231)
Q Consensus        77 ~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~--~-~~~~~~~~~~~~~~~-------------~~~  136 (231)
                      .+. +...+.+++|+|+  +..+++ +.++.+++||.........  . ..+..+..+.+  +|             ++.
T Consensus        94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~~~~~~~~~~d~~  171 (753)
T 3jro_A           94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW--APATIEEDGEHNGTKESR  171 (753)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE--CCCC---------CGGGC
T ss_pred             cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe--cCcccccccccccCCCCC
Confidence            333 4578999999998  777665 5678999999887633222  1 22334555444  55             578


Q ss_pred             EEEEecCCCeEEEEeCCCc----ceeeeccCCCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCC
Q psy6442         137 IFVCGGEDLKMYKFDYSTG----AEIESFKGHFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       137 ~~~~g~~d~~i~~~d~~~~----~~~~~~~~h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .+++|+.|+.|++||++++    .....+.+|..+|++++|+|+   +.+|++++.|++|+|||+.+++
T Consensus       172 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            8999999999999999776    456778899999999999999   8999999999999999998874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=1.6e-23  Score=177.26  Aligned_cols=193  Identities=11%  Similarity=0.132  Sum_probs=142.2

Q ss_pred             CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE---eCCcceeEEEc
Q psy6442          14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEIS   90 (231)
Q Consensus        14 ~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~---~~~~~~~v~~~   90 (231)
                      ..++.....+|...|.+++|+|..              +..|++|+.||+|+|||+..++....+.   +...|.+++|+
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~--------------~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~  173 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTH--------------PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN  173 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSC--------------TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEEC
T ss_pred             ceeecccCCCCCCCEEEEEEeCCC--------------CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEe
Confidence            345566778899999999999852              4468999999999999998877655554   45789999999


Q ss_pred             c-CCCEEEE-EcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC
Q psy6442          91 R-DGTTITV-THGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP  167 (231)
Q Consensus        91 ~-~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~  167 (231)
                      | ++..++. +.+++|++||............. ......++.+++++.++++|+.|+.|++||++ ++.+..+.+|..+
T Consensus       174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~  252 (435)
T 4e54_B          174 PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKK  252 (435)
T ss_dssp             SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSC
T ss_pred             CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccce
Confidence            8 5666654 46889999998765432222211 12222334458899999999999999999985 4667888999999


Q ss_pred             eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCeeeeeeccC--CcccCCCCCCcccc
Q psy6442         168 IHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKTYGLWKCIE--GGLNNSLGLDSSGH  221 (231)
Q Consensus       168 V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  221 (231)
                      |.+++|+|++. +|++++.|++|+|||+++++.........  ......++|.++|.
T Consensus       253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~  309 (435)
T 4e54_B          253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA  309 (435)
T ss_dssp             EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred             EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC
Confidence            99999999875 78999999999999998877544332211  12233455555543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=1.3e-23  Score=172.75  Aligned_cols=195  Identities=14%  Similarity=0.174  Sum_probs=153.4

Q ss_pred             CCcCCCceeeeccCCCeEee--eecccccEEEEEECCCCceeEeccccccc-----------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDASKAASGAADFQA-----------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~--l~gH~~~V~~~~~~~~~~~~~s~~~d~~~-----------------------------   49 (231)
                      ++.||+|++|+..+++....  +.+|.+.|.++.|+|+++.+++++.+..+                             
T Consensus        70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            36799999999998886554  46899999999999999999988765321                             


Q ss_pred             --cCCCEEEEEeCCCCEEEEeCC------------------CCCceEEEE-eCCcceeEEEccCCCEEEE-EcCCeEEEE
Q psy6442          50 --KNNTRLISCAEDKTVRLWDVS------------------ASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFL  107 (231)
Q Consensus        50 --~~~~~l~s~s~D~ti~iwd~~------------------~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~i~~~  107 (231)
                        .++..|++++.|++|++||+.                  .++.+..+. +...+.+++|+|++..+++ +.++.+++|
T Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  229 (372)
T 1k8k_C          150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA  229 (372)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence              156789999999999999964                  455555553 4567899999999987765 467899999


Q ss_pred             ECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCC--cc----------------------------
Q psy6442         108 DANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYST--GA----------------------------  156 (231)
Q Consensus       108 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~--~~----------------------------  156 (231)
                      |..+.+.+..+..+. ++..+.+  ++++.+++++ .|+.|++|++..  +.                            
T Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (372)
T 1k8k_C          230 DADKKMAVATLASETLPLLAVTF--ITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  306 (372)
T ss_dssp             EGGGTTEEEEEECSSCCEEEEEE--EETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             ECCCCceeEEEccCCCCeEEEEE--ecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence            999888877766543 5555555  6788888877 899999999877  32                            


Q ss_pred             ----ee------eec-cCCCCCeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCC
Q psy6442         157 ----EI------ESF-KGHFGPIHCVKFS-PDG---ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       157 ----~~------~~~-~~h~~~V~~v~~s-pd~---~~laS~s~d~~v~iwd~~~~~  198 (231)
                          ..      ..+ .+|..+|++++|+ +++   .+|+|++.||.|+||++.+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                00      233 4899999999966 666   999999999999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=3.2e-23  Score=181.08  Aligned_cols=182  Identities=19%  Similarity=0.220  Sum_probs=151.0

Q ss_pred             cCCCceeeeccCC----CeEeeeeccccc-EEEEEECC--CCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---
Q psy6442           3 VDGKPMLRQGDTG----DWIGTFEGHKGC-VWGVDINK--DASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---   72 (231)
Q Consensus         3 ~d~~~~~~~~~~g----~~i~~l~gH~~~-V~~~~~~~--~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---   72 (231)
                      .|+.+++|+..++    +.+..+.+|.+. |.+++|+|  ++               +.|++++.|++|++||+.++   
T Consensus        37 ~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~---------------~~l~s~~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           37 CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS---------------QYLCSGDESGKVIVWGWTFDKES  101 (615)
T ss_dssp             ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC---------------CEEEEEETTSEEEEEEEEEEGGG
T ss_pred             cCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC---------------CEEEEecCCCEEEEEeCCCCccc
Confidence            3789999999999    899999999999 99999999  74               45899999999999999754   


Q ss_pred             -----CceEEEE-eCCcceeEEEccCCCEEEEEcC-----CeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCC-EEE
Q psy6442          73 -----AEVQKLE-FGAVPNSLEISRDGTTITVTHG-----SCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERP-IFV  139 (231)
Q Consensus        73 -----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  139 (231)
                           +....+. +...+.+++|+|+++.+++...     +.+.+||  ..+.+.....+ ..+..+.+  +|++. .++
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~  177 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL--KQSRPMRSM  177 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE--CSSSSCEEE
T ss_pred             ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE--CCCCCcEEE
Confidence                 3444444 4678999999999998876543     4777787  33444444332 34554444  78887 799


Q ss_pred             EecCCCeEEEEeCCCcceeeeccCCCC---CeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         140 CGGEDLKMYKFDYSTGAEIESFKGHFG---PIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~---~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      +++.|+.|++||..+++.+..+.+|..   +|.+++|+|+ +++|++++.|+.|++||+.+++....+
T Consensus       178 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            999999999999999999999999999   9999999999 999999999999999999999987766

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4e-23  Score=169.96  Aligned_cols=187  Identities=14%  Similarity=0.166  Sum_probs=146.0

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.||+|++|+..+++  .+..+.+|.+.|.++.|+|+.             .+..|++++.|++|++||+..+......
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-------------CCCEEEEecCCCcEEEEecCCCCceeeE
Confidence            3679999999999997  788899999999999999961             1346899999999999999887443332


Q ss_pred             ---EeCCcceeEEEcc-------------CCCEEEE-EcCCeEEEEECCCcceE----Eeeec-cceeEEEEEEecCC--
Q psy6442          79 ---EFGAVPNSLEISR-------------DGTTITV-THGSCVTFLDANSLELI----KEHKV-PAQVHSASLLLNSE--  134 (231)
Q Consensus        79 ---~~~~~~~~v~~~~-------------~~~~~~~-~~~~~i~~~d~~~~~~~----~~~~~-~~~~~~~~~~~~~~--  134 (231)
                         .+...+.+++|+|             ++..+++ +.++.+++||.+.....    ..... ...+..+.+  +|+  
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~  219 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL  219 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE--CCCCC
Confidence               2456789999999             5776665 46789999998754432    22222 234554444  888  


Q ss_pred             -CCEEEEecCCCeEEEEeCCCcc-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         135 -RPIFVCGGEDLKMYKFDYSTGA-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       135 -~~~~~~g~~d~~i~~~d~~~~~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                       +..+++++.|+.|++||+.++.     .+.....|...|.+++|+|++++|++++.|+.|+||++..+..+..
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~  293 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP  293 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence             8899999999999999998763     2333445889999999999999999999999999999986655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=2.6e-23  Score=195.86  Aligned_cols=193  Identities=24%  Similarity=0.409  Sum_probs=165.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCC--CceeEeccccccc---------------------------cC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQA---------------------------KN   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~--~~~~~s~~~d~~~---------------------------~~   51 (231)
                      ++.||+|++|+..+|+.+.++.+|.+.|.++.|+|+  +..+++++.|..+                           .+
T Consensus       675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~  754 (1249)
T 3sfz_A          675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD  754 (1249)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred             EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence            367999999999999999999999999999999994  4577887765322                           16


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--------------CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEe
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKE  117 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  117 (231)
                      +..|++++.|++|++||+.+++....+...              ..+.+++|+|++..++++.++.+.+||..+......
T Consensus       755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE  834 (1249)
T ss_dssp             TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence            789999999999999999988776666432              257788999999999888889999999998887766


Q ss_pred             eecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         118 HKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       118 ~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ....  ..+..+  .++|++..+++++.++.|++||..++..+..+.+|..+|.+++|+|++++|++++.|++|++|++.
T Consensus       835 ~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          835 IHTGHHSTIQYC--DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EECSSSSCCCEE--EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EcCCCCCceEEE--EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            5432  344444  448899999999999999999999999999999999999999999999999999999999999965

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=5.8e-22  Score=164.59  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=163.0

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecc-ccccc--------------------------cCCCE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQA--------------------------KNNTR   54 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~-~d~~~--------------------------~~~~~   54 (231)
                      +.|++|++|+..+|+.+..+..|. .|.++.|+|+++.++.++ .+..+                          .+++.
T Consensus        51 ~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  129 (391)
T 1l0q_A           51 AHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK  129 (391)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred             CCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCE
Confidence            468999999999999999988665 899999999998775433 32211                          15666


Q ss_pred             E-EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEe
Q psy6442          55 L-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLL  131 (231)
Q Consensus        55 l-~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  131 (231)
                      | ++++.|++|++||+.+++.+..+.....+..++++|++..++++  .++.+.+||..+.+..........+..+  .+
T Consensus       130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~  207 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI--AV  207 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEE--EE
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccce--EE
Confidence            6 78888999999999999888888877788999999999987543  4579999999988777766655545444  44


Q ss_pred             cCCCCEEEEec---CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         132 NSERPIFVCGG---EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       132 ~~~~~~~~~g~---~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      ++++..+++++   .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++....+...
T Consensus       208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence            88888888777   68999999999998888887765 47899999999876 78889999999999999988776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4.8e-24  Score=176.32  Aligned_cols=177  Identities=11%  Similarity=0.091  Sum_probs=133.6

Q ss_pred             CCcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc---
Q psy6442           1 MCVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE---   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~---   74 (231)
                      ++.||+|++|+..+++   .+..+.+|.+.|.++.|+|+++               .|++++.|++|++||+..++.   
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED---------------KFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS---------------CCEEEESSSCEEECCC-----CCC
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC---------------EEEEEecCCeEEEEEECCccccee
Confidence            3679999999999887   6777889999999999999754               578999999999999998763   


Q ss_pred             eEEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC------------------cceEEeeeccceeEEEEEEecC
Q psy6442          75 VQKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANS------------------LELIKEHKVPAQVHSASLLLNS  133 (231)
Q Consensus        75 ~~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~  133 (231)
                      ...+.  +...+.+++|+|++..++. +.++.+++||...                  ...+..+.....+..+.  ++|
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp  215 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVG--FSP  215 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEE--ECT
T ss_pred             eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEE--ECC
Confidence            55554  5678999999999987765 4678999999752                  22333332223444444  489


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcce----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAE----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ++.++++++.|+.|++||+.+++.    +..+.+|..+|.+++|+|++++|++++.++.+ +|+..
T Consensus       216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999999999999998877    78889999999999999999999999877766 66654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=1.2e-23  Score=183.90  Aligned_cols=211  Identities=15%  Similarity=0.220  Sum_probs=161.8

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------cCCCEEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------KNNTRLISCAE   60 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------~~~~~l~s~s~   60 (231)
                      +.||++++|+..+++.+..+.+|.+.|.++.| |+   +++++.|..+                     .++..|++++.
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence            57899999999999999999999999999999 77   6666554321                     23677888888


Q ss_pred             CCCEEEEeCC----------------------------------CCCceEEEEeCCcceeEEEccCCCEEEE-Ec-CCeE
Q psy6442          61 DKTVRLWDVS----------------------------------ASAEVQKLEFGAVPNSLEISRDGTTITV-TH-GSCV  104 (231)
Q Consensus        61 D~ti~iwd~~----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~i  104 (231)
                      |++|++||+.                                  .++.+..+.+...+.+++++  +..+++ .. ++.+
T Consensus       392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i  469 (615)
T 1pgu_A          392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI  469 (615)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred             CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence            8888888765                                  44455555666778888888  555554 45 7899


Q ss_pred             EEEECCCcceE-Eeee-ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-CCCCeeEEEEcC------
Q psy6442         105 TFLDANSLELI-KEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-HFGPIHCVKFSP------  175 (231)
Q Consensus       105 ~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-h~~~V~~v~~sp------  175 (231)
                      ++||....... .... ....+..+.  ++|++.++++++.|+.|++||+.+++.+..+.+ |..+|++++|+|      
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  547 (615)
T 1pgu_A          470 QVFKLSDLEVSFDLKTPLRAKPSYIS--ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  547 (615)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEE--ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             EEEECCCccccccccCCccCceEEEE--ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccc
Confidence            99999876554 2222 223454444  489999999999999999999999999999988 999999999999      


Q ss_pred             ----CCCEEEEeeCCCcEEEEeCCCC-CeeeeeeccCCcccCCCCCCcccc
Q psy6442         176 ----DGELYASGSEDGTLRLWQTNVG-KTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       176 ----d~~~laS~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                          ++++|++++.|++|+|||+.++ +....++... .....++|.++|.
T Consensus       548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~  597 (615)
T 1pgu_A          548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK-DGVNNLLWETPST  597 (615)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST-TCEEEEEEEETTE
T ss_pred             ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc-cceEEEEEcCCCC
Confidence                9999999999999999999988 5665555432 2233444544443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=1.8e-22  Score=169.86  Aligned_cols=216  Identities=16%  Similarity=0.209  Sum_probs=170.4

Q ss_pred             CcCCCceeeeccCCCeEe-----eeecccccEEEEEECCCCceeEecccccccc--------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIG-----TFEGHKGCVWGVDINKDASKAASGAADFQAK--------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~-----~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------------------   50 (231)
                      +.|++|++|+..+|+.+.     .+.+|.+.|+++.|++++..+++++.+..+.                          
T Consensus       141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  220 (433)
T 3bws_A          141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD  220 (433)
T ss_dssp             TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred             CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence            467899999999999888     5679999999999999999998886643221                          


Q ss_pred             -CCCEE-EEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc---------CCeEEEEECCCcceEEeee
Q psy6442          51 -NNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH---------GSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        51 -~~~~l-~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~  119 (231)
                       ++..+ ++++.|++|++||+.+++.+..+.....+..++++|++..++++.         ++.+.+||..+.+......
T Consensus       221 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~  300 (433)
T 3bws_A          221 PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG  300 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence             45666 455589999999999988877777677789999999998877643         5689999998877766654


Q ss_pred             ccceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC-------------
Q psy6442         120 VPAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE-------------  185 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~-------------  185 (231)
                      .+..+..+.  ++|++. ++++++.++.|++||..+++.+..+. +...+.+++|+|++++|++++.             
T Consensus       301 ~~~~~~~~~--~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          301 PPGNKRHIV--SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             EEECEEEEE--ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             CCCCcceEE--ECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence            443444433  478886 55677899999999999888877776 7778999999999998888776             


Q ss_pred             --CCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         186 --DGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       186 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                        ||.|++||+.+++.......  ......+++.++|+.
T Consensus       378 ~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          378 LVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRY  414 (433)
T ss_dssp             SSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCE
T ss_pred             ccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCE
Confidence              57999999999998877765  334556666666654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=1.1e-22  Score=168.03  Aligned_cols=173  Identities=12%  Similarity=0.106  Sum_probs=135.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC-CceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS-AEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~-~~~~~~~   79 (231)
                      ++.|++|++|+..+|+.+.++. |...|.++.|+++.                 ++.+ .|++|++||+.++ +.+..+.
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-----------------~~~~-~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-----------------IVVS-YGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-----------------EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred             ECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-----------------EEEE-EcCEEEEEECCCCceeeEEec
Confidence            3568899999999999999987 77899999998752                 3333 4889999999987 6555544


Q ss_pred             eCCcceeEEEccCCCEEEE---EcCCeEEEEECCCcce----------------EEeeec-cceeEEEEEEecCCCCEEE
Q psy6442          80 FGAVPNSLEISRDGTTITV---THGSCVTFLDANSLEL----------------IKEHKV-PAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~---~~~~~i~~~d~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~  139 (231)
                      .  ....+++++  ..+++   ..++.+++||..+...                +..+.. ...+..+.+  +|++.+++
T Consensus       138 ~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~--s~~g~~l~  211 (355)
T 3vu4_A          138 R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL--NRKSDMVA  211 (355)
T ss_dssp             E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE--CTTSSEEE
T ss_pred             c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE--CCCCCEEE
Confidence            3  334556666  44444   2468999999886541                233322 234555444  89999999


Q ss_pred             EecCCCe-EEEEeCCCcceeeecc-C-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         140 CGGEDLK-MYKFDYSTGAEIESFK-G-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       140 ~g~~d~~-i~~~d~~~~~~~~~~~-~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +++.|++ |++||+.+++.+.++. + |.++|++++|+|++++|++++.|++|+|||+..+.
T Consensus       212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999998 9999999999999998 6 99999999999999999999999999999997664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=176.12  Aligned_cols=182  Identities=15%  Similarity=0.203  Sum_probs=141.7

Q ss_pred             CCcCCCceeeeccCCCeE---------------------------------------ee-eecccccEEEEEECCCCcee
Q psy6442           1 MCVDGKPMLRQGDTGDWI---------------------------------------GT-FEGHKGCVWGVDINKDASKA   40 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i---------------------------------------~~-l~gH~~~V~~~~~~~~~~~~   40 (231)
                      ++.||+|++|+..+++..                                       .. +.+|.+.|.+++|+|+++  
T Consensus       113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  190 (447)
T 3dw8_B          113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--  190 (447)
T ss_dssp             EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--
T ss_pred             eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--
Confidence            367999999998775542                                       12 468999999999999754  


Q ss_pred             EeccccccccCCCEEEEEeCCCCEEEEeCCC-CCceEEE--------EeCCcceeEEEccCC-CEEEE-EcCCeEEEEEC
Q psy6442          41 ASGAADFQAKNNTRLISCAEDKTVRLWDVSA-SAEVQKL--------EFGAVPNSLEISRDG-TTITV-THGSCVTFLDA  109 (231)
Q Consensus        41 ~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-~~~~~~~--------~~~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~  109 (231)
                                   .|+++ .|++|++||+.. ++....+        .+...+.+++|+|++ ..++. +.++.+++||.
T Consensus       191 -------------~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          191 -------------TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             -------------EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             -------------EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence                         57887 799999999984 3444333        234568999999998 66654 56889999999


Q ss_pred             CCcce----EEeeeccc-------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCC-cceeeeccCCCCC----
Q psy6442         110 NSLEL----IKEHKVPA-------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYST-GAEIESFKGHFGP----  167 (231)
Q Consensus       110 ~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~----  167 (231)
                      +....    ...+..+.             .+..+  .++|++.++++++. +.|++||+.. ++.+..+.+|...    
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l  333 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV--KFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL  333 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE--EECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEE--EECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence            87765    44444332             44444  44889999999998 9999999987 8888888888642    


Q ss_pred             -----------eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         168 -----------IHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       168 -----------V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                                 +..++|+|++.+|++++.|+.|+|||+.+++...
T Consensus       334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                       2349999999999999999999999999998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=2.3e-22  Score=163.62  Aligned_cols=215  Identities=11%  Similarity=0.068  Sum_probs=150.7

Q ss_pred             CCCceeeeccCC---CeEeeeecccccEEEEEECC-------------------------C----CceeEeccccc---c
Q psy6442           4 DGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINK-------------------------D----ASKAASGAADF---Q   48 (231)
Q Consensus         4 d~~~~~~~~~~g---~~i~~l~gH~~~V~~~~~~~-------------------------~----~~~~~s~~~d~---~   48 (231)
                      +.+|+||++.++   ++++++++|+.+|..+.+.|                         +    ++.+++++.+.   .
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~  141 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG  141 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence            568999999999   89999999998777776666                         4    44444444322   1


Q ss_pred             ccCCCEEEEEe---CCCCEEEEeCC-CCCceEEEE-eCCcceeEEEcc---CCCEEEE-EcCCeEEEEECCCcceEEeee
Q psy6442          49 AKNNTRLISCA---EDKTVRLWDVS-ASAEVQKLE-FGAVPNSLEISR---DGTTITV-THGSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        49 ~~~~~~l~s~s---~D~ti~iwd~~-~~~~~~~~~-~~~~~~~v~~~~---~~~~~~~-~~~~~i~~~d~~~~~~~~~~~  119 (231)
                      + .+.+++.++   .|++|++|++. +++.+..+. +...+..++|+|   ++..++. +.|++|++||..+.+.++++.
T Consensus       142 l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          142 L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence            2 234444443   49999999994 466665544 456778889988   5666664 678999999999999888775


Q ss_pred             ccc----eeEEEEEEecCCCCEE------------EEecCCCeEEEEeCCCcceeeec-----cCCCCCeeEEEEcCCCC
Q psy6442         120 VPA----QVHSASLLLNSERPIF------------VCGGEDLKMYKFDYSTGAEIESF-----KGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       120 ~~~----~~~~~~~~~~~~~~~~------------~~g~~d~~i~~~d~~~~~~~~~~-----~~h~~~V~~v~~spd~~  178 (231)
                      .+.    .+..  ..++|++.++            ++|+.|.+|++||..+++.+..+     .+|...+.+..++  +.
T Consensus       221 g~~~~v~~v~~--vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~  296 (356)
T 2w18_A          221 IDDSYQASVCH--KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH  296 (356)
T ss_dssp             CCC---CCCEE--EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred             CCCcceeeeEE--EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence            321    1222  2335666654            67889999999999999877654     4787766555444  88


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccccc
Q psy6442         179 LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      ++|+++.|++|+|||+.+++..++++...+.....++|.++|+.+
T Consensus       297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence            999999999999999999999888875544333346677777643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=1.3e-22  Score=164.37  Aligned_cols=177  Identities=18%  Similarity=0.231  Sum_probs=139.1

Q ss_pred             eeeecccccEEEEEECCCCceeEecccccccc---------------------------------CCCEEEEEeCCCCEE
Q psy6442          19 GTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------------NNTRLISCAEDKTVR   65 (231)
Q Consensus        19 ~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------------~~~~l~s~s~D~ti~   65 (231)
                      ..+++|.+.|.+++|+|+++.+++++.|..++                                 ++..|++++.|++|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            34689999999999999999999997653221                                 378999999999999


Q ss_pred             EEeCCCCC---------ceEEEE-eCCcceeEEEccC--CCEEEE-EcCCeEEEEECCCcceEEeeec------------
Q psy6442          66 LWDVSASA---------EVQKLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDANSLELIKEHKV------------  120 (231)
Q Consensus        66 iwd~~~~~---------~~~~~~-~~~~~~~v~~~~~--~~~~~~-~~~~~i~~~d~~~~~~~~~~~~------------  120 (231)
                      +||+..++         ....+. +...+.+++|+|+  +..+++ +.++.+++||..+.+.+..+..            
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998763         233332 4567899999999  886665 5688999999887664433221            


Q ss_pred             --cceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCcce--eeeccCCCCCeeEEEEcCCC----CEEEEeeCCCcE
Q psy6442         121 --PAQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAE--IESFKGHFGPIHCVKFSPDG----ELYASGSEDGTL  189 (231)
Q Consensus       121 --~~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~----~~laS~s~d~~v  189 (231)
                        ...+..+.  ++|+   +..+++++.++.+..|+...+..  +..+.+|..+|++++|+|++    ++|++++.|+.|
T Consensus       165 ~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          165 NHLQSDFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             SCSCCCEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             CcccceeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence              12233333  3665   78899999999998888776654  67788999999999999998    899999999999


Q ss_pred             EEEeCCCC
Q psy6442         190 RLWQTNVG  197 (231)
Q Consensus       190 ~iwd~~~~  197 (231)
                      +|||++.+
T Consensus       243 ~iwd~~~~  250 (351)
T 3f3f_A          243 RIFKITEK  250 (351)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeCCCC
Confidence            99999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=5e-23  Score=172.31  Aligned_cols=179  Identities=11%  Similarity=-0.024  Sum_probs=128.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-   79 (231)
                      +|.|++||||+..++..+..+.+|.+.|.+++|+|++.              .+|++++.|++|++||+++++...... 
T Consensus       162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~--------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          162 VGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP--------------NQLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE--------------EEEEEEETTSEEEEEETTCCC-------
T ss_pred             EECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC--------------ceEEecCCCCEEEEEECCCCcccccccc
Confidence            47899999999998988888999999999999999742              358999999999999998775432221 


Q ss_pred             -------------------------eCCcceeEEEc-cCCCEEEE-EcCCeEEEEECCCcceEEeeecc-----------
Q psy6442          80 -------------------------FGAVPNSLEIS-RDGTTITV-THGSCVTFLDANSLELIKEHKVP-----------  121 (231)
Q Consensus        80 -------------------------~~~~~~~v~~~-~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~-----------  121 (231)
                                               +...+.++.|. |++..++. +.++.+++||.........+...           
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence                                     12346677775 78887665 45789999998765433222110           


Q ss_pred             --------ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         122 --------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       122 --------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                              .......+....++.++++|+.|++|++||..++..+..+.+|..+|++++|||||++||+++.+| +.+|.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence                    000111222234556778899999999999999988888888999999999999999999999877 55554


Q ss_pred             C
Q psy6442         194 T  194 (231)
Q Consensus       194 ~  194 (231)
                      +
T Consensus       387 L  387 (393)
T 4gq1_A          387 L  387 (393)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=7.5e-23  Score=166.59  Aligned_cols=186  Identities=13%  Similarity=0.066  Sum_probs=146.2

Q ss_pred             CCcCCCceeeeccCCC---eEeeeecccccEEEEEECCCCceeEeccccccccCCC-EEEEEeCCCCEEEEeC-CCCCce
Q psy6442           1 MCVDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNT-RLISCAEDKTVRLWDV-SASAEV   75 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~---~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~-~l~s~s~D~ti~iwd~-~~~~~~   75 (231)
                      ++.||+|++|+..+++   .+..+.+|.+.|.++.|+|++               . .|++++.|++|++||+ ..++..
T Consensus        29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~~l~~~~~dg~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT---------------DLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS---------------SEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC---------------CcEEEEEcCCCeEEEEEeccCCceE
Confidence            3579999999998887   355567999999999999874               4 5889999999999999 877653


Q ss_pred             EEEE--eCCcceeEEEccCCCEEEE-EcCCeEEEEECCC---------cceEEeeeccceeEEEEEEecCCCCEEEEecC
Q psy6442          76 QKLE--FGAVPNSLEISRDGTTITV-THGSCVTFLDANS---------LELIKEHKVPAQVHSASLLLNSERPIFVCGGE  143 (231)
Q Consensus        76 ~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  143 (231)
                      ....  +...+.+++|+| +..++. +.++.+++||...         .+.+..+..+..+..+.+  ++++  +++++.
T Consensus        94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~~~~  168 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT--NSSR--LIVGMN  168 (342)
T ss_dssp             ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE--CSSE--EEEEES
T ss_pred             eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe--cCCc--EEEEeC
Confidence            3333  567889999999 666554 5688999999876         555555544445555444  6665  889999


Q ss_pred             CCeEEEEeCCC-cce--eeeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCC------Ceeeeeecc
Q psy6442         144 DLKMYKFDYST-GAE--IESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVG------KTYGLWKCI  206 (231)
Q Consensus       144 d~~i~~~d~~~-~~~--~~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~------~~~~~~~~~  206 (231)
                      ++.|++||+.+ +..  ......|..+|.+++|+| ++++|++++.|+.|+||++..+      +....++..
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            99999999987 543  234456889999999999 9999999999999999999887      655666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=4.1e-22  Score=179.96  Aligned_cols=186  Identities=19%  Similarity=0.307  Sum_probs=153.5

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCC
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT   94 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~   94 (231)
                      +..++|++|.+.|.+++|+|++               ..|++++.||+|+|||+.+++.+..+. +...+.+++|+|++.
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~---------------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~   68 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTE---------------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN   68 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT
T ss_pred             ccceeeecCCCceEEEEECCCC---------------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC
Confidence            4567899999999999999985               458899999999999999998888776 567899999999999


Q ss_pred             EEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEE
Q psy6442          95 TITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCV  171 (231)
Q Consensus        95 ~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v  171 (231)
                      .++++ .++.+.+||..+.+.+.....+ ..+..+.+  +|++..+++++.|+.|++||+.++ .....+.+|..+|.++
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence            77664 5789999999988887776543 35555544  899999999999999999999886 6677888999999999


Q ss_pred             EEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         172 KFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       172 ~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      +|+| ++.+|++++.|++|++||+.+++....+..........+.+.+
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence            9999 8899999999999999999888876666544333334444433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.6e-22  Score=166.99  Aligned_cols=186  Identities=12%  Similarity=0.088  Sum_probs=148.6

Q ss_pred             CcCCCceeeecc--CCCeEeeee--cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE-
Q psy6442           2 CVDGKPMLRQGD--TGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ-   76 (231)
Q Consensus         2 ~~d~~~~~~~~~--~g~~i~~l~--gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~-   76 (231)
                      +.||+|++|+..  +|+.+..+.  +|...|.+++|+|++               ..|++++.|+.|++|++..+.... 
T Consensus       122 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------------~~l~~~~~~g~v~~~~~~~~~~~~~  186 (450)
T 2vdu_B          122 DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD---------------TTVIIADKFGDVYSIDINSIPEEKF  186 (450)
T ss_dssp             GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTSCCCSSC
T ss_pred             CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC---------------CEEEEEeCCCcEEEEecCCcccccc
Confidence            579999999998  899999987  566899999999975               457889999999999998776542 


Q ss_pred             ---E-EEeCCcceeEEEccC---CCEEEE-EcCCeEEEEECCCcceEEeee--ccceeEEEEEEecCCCCEEEEecCCCe
Q psy6442          77 ---K-LEFGAVPNSLEISRD---GTTITV-THGSCVTFLDANSLELIKEHK--VPAQVHSASLLLNSERPIFVCGGEDLK  146 (231)
Q Consensus        77 ---~-~~~~~~~~~v~~~~~---~~~~~~-~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~  146 (231)
                         . ..+...+.+++|+|+   +..++. +.++.|++||..+...+..+.  ....+..+.+  + ++.++++++.|++
T Consensus       187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--s-d~~~l~s~~~d~~  263 (450)
T 2vdu_B          187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC--G-KDYLLLSAGGDDK  263 (450)
T ss_dssp             CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE--C-STTEEEEEESSSE
T ss_pred             cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE--C-CCCEEEEEeCCCe
Confidence               2 235678999999999   876655 467899999998877666532  2345555555  6 8899999999999


Q ss_pred             EEEEeCCCcceeeeccC-------------------------CCCCeeEEEEcCCCCEEEEee-CCCcEEEEeC--CCC-
Q psy6442         147 MYKFDYSTGAEIESFKG-------------------------HFGPIHCVKFSPDGELYASGS-EDGTLRLWQT--NVG-  197 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~-------------------------h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~--~~~-  197 (231)
                      |++||+.+++.+..+..                         +...|.+++|+|++++|++++ .|+.|+||++  ..+ 
T Consensus       264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~  343 (450)
T 2vdu_B          264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG  343 (450)
T ss_dssp             EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT
T ss_pred             EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC
Confidence            99999999987777652                         235789999999999999998 8999999999  555 


Q ss_pred             --Ceeeeeec
Q psy6442         198 --KTYGLWKC  205 (231)
Q Consensus       198 --~~~~~~~~  205 (231)
                        +..+..+.
T Consensus       344 ~l~~~~~~~~  353 (450)
T 2vdu_B          344 DLALKQIITF  353 (450)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceeeccEecc
Confidence              44444443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=5.3e-22  Score=162.45  Aligned_cols=177  Identities=15%  Similarity=0.147  Sum_probs=128.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEE--CCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI--NKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~--~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.||+|++|+..+++.+. +.+|.+.|.++.|  +++++.               |++++.|++|++||+++++.+..+
T Consensus       104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------------l~~~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC---------------VMTGSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEE---------------EEEEETTSEEEEECSSCSSCSEEE
T ss_pred             EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCE---------------EEEccCCCcEEEEECCCCcEEEEE
Confidence            3679999999999888777 6779999999999  777655               455555555555555555444333


Q ss_pred             EeC------------------------------------------CcceeEEEccCCC-----EEEEEcCCeEEEEECCC
Q psy6442          79 EFG------------------------------------------AVPNSLEISRDGT-----TITVTHGSCVTFLDANS  111 (231)
Q Consensus        79 ~~~------------------------------------------~~~~~v~~~~~~~-----~~~~~~~~~i~~~d~~~  111 (231)
                      ...                                          .....+++.++..     .+..+.++.+++|+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  247 (368)
T 3mmy_A          168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP  247 (368)
T ss_dssp             ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred             ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence            322                                          2233444444332     33445678999999876


Q ss_pred             c---ceEEeeeccc-------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442         112 L---ELIKEHKVPA-------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       112 ~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp  175 (231)
                      .   .....+....             .+..  +.++|++.++++++.|+.|++||+.+++.+..+.+|..+|.+++|+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG--IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             SCHHHHSEEEECSEEC----CCCEEECCEEE--EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred             CCccccceeeeeeecccccccccccccceEE--EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence            5   2233333222             2444  44588999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCC
Q psy6442         176 DGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       176 d~~~laS~s~d~~v~iwd~~  195 (231)
                      ++++|++++.|+..+.|++-
T Consensus       326 ~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          326 NGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             TSSCEEEEECCCSTTCGGGC
T ss_pred             CCCeEEEEeccccccccccc
Confidence            99999999998866655543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.8e-22  Score=177.54  Aligned_cols=184  Identities=14%  Similarity=0.161  Sum_probs=144.6

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceE--
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQ--   76 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~--   76 (231)
                      ++.||+|++|+..+++  .+..+.+|.+.|.++.|+|+.             ++..+++++.||+|++||+..+....  
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-------------~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-------------YGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-------------GCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC-------------CCCEEEEEeCCCcEEEEEeecCCCccee
Confidence            4679999999999887  788899999999999999971             14468999999999999998874322  


Q ss_pred             EE-EeCCcceeEEEcc-------------CCCEEEE-EcCCeEEEEECCCcce----EEeeec-cceeEEEEEEecCC--
Q psy6442          77 KL-EFGAVPNSLEISR-------------DGTTITV-THGSCVTFLDANSLEL----IKEHKV-PAQVHSASLLLNSE--  134 (231)
Q Consensus        77 ~~-~~~~~~~~v~~~~-------------~~~~~~~-~~~~~i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~--  134 (231)
                      .+ .+...+.+++|+|             ++..+++ +.++.|++||.+....    ...... ...+..+.+  +|+  
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~  217 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL  217 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe--ccCCC
Confidence            22 3456889999999             3665554 5688999999876532    223322 234555444  788  


Q ss_pred             -CCEEEEecCCCeEEEEeCCCcc-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         135 -RPIFVCGGEDLKMYKFDYSTGA-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       135 -~~~~~~g~~d~~i~~~d~~~~~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                       +..+++++.|+.|++||+.++.     .+....+|...|++++|+|++++|++++.||.|+||++..+..
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence             8899999999999999998764     3344567899999999999999999999999999999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.3e-21  Score=168.53  Aligned_cols=170  Identities=9%  Similarity=0.116  Sum_probs=134.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccc-----cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKG-----CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-   74 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~-----~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-   74 (231)
                      ++.||+|++|+...  ++..+. |..     .|.+++|+|+|+               .|++|+.||+|+|||+.++.. 
T Consensus       103 ~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~---------------~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A          103 LSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES---------------SIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS---------------CEEEEETTSEEEEEECCCCTTT
T ss_pred             EeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC---------------EEEEEcCCCEEEEEECCCCccc
Confidence            36799999999543  888888 776     499999999854               589999999999999998763 


Q ss_pred             ------eEEEEe-----CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceE---Eeee-c-cceeEEEEEEecCCCCEE
Q psy6442          75 ------VQKLEF-----GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELI---KEHK-V-PAQVHSASLLLNSERPIF  138 (231)
Q Consensus        75 ------~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~-~-~~~~~~~~~~~~~~~~~~  138 (231)
                            +.++..     ...+.+++|+|++ .++.+.++.+++|+.......   ++.. . ...+..+.+  +  +..+
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF--s--g~~L  239 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI--V--DYKV  239 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE--E--TTEE
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE--E--CCEE
Confidence                  455542     2479999999999 767778999999998876632   2332 2 234555555  3  4678


Q ss_pred             EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEE--cCCCCEEEEeeCCCcEEEEeCC
Q psy6442         139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF--SPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~--spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ++++ +++|++||...+.......+|.+.|.+++|  +||+..|+++++||+ |||...
T Consensus       240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            8887 689999999887764433489999999999  999999999999999 999973

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=1.9e-20  Score=157.44  Aligned_cols=192  Identities=11%  Similarity=0.049  Sum_probs=155.3

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeE-eccccccc--------------------------cCCCE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQA--------------------------KNNTR   54 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~-s~~~d~~~--------------------------~~~~~   54 (231)
                      +.|++|++|+..+++.+.++..|...+.+++|+|+++.++ ++..+..+                          .+++.
T Consensus       188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (433)
T 3bws_A          188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKE  267 (433)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSE
T ss_pred             CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCE
Confidence            5689999999999999999999999999999999998775 43233211                          15678


Q ss_pred             EEEEe--------CCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeecccee
Q psy6442          55 LISCA--------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQV  124 (231)
Q Consensus        55 l~s~s--------~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~  124 (231)
                      |++++        .|++|++||+.+++....+.+...+..++++|++..++++  .++.+.+||..+.+..........+
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            88888        5899999999999887777666788899999999876554  5689999999988777776655555


Q ss_pred             EEEEEEecCCCCEEEEecC---------------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee-CCCc
Q psy6442         125 HSASLLLNSERPIFVCGGE---------------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS-EDGT  188 (231)
Q Consensus       125 ~~~~~~~~~~~~~~~~g~~---------------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~  188 (231)
                      ..+.  +++++..+++++.               |+.|++||..+++.+..+.. ...+.+++|+|++++|++++ .|++
T Consensus       348 ~~~~--~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          348 NTIA--LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             EEEE--ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             CeEE--EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence            5444  4888887777665               56999999999988888875 45789999999999988776 4999


Q ss_pred             EEEEeCCC
Q psy6442         189 LRLWQTNV  196 (231)
Q Consensus       189 v~iwd~~~  196 (231)
                      |++|++..
T Consensus       425 i~v~~~~~  432 (433)
T 3bws_A          425 IRVYRRDG  432 (433)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            99999753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.7e-21  Score=178.69  Aligned_cols=166  Identities=14%  Similarity=0.111  Sum_probs=138.1

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCE-EEEE
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT-ITVT   99 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~   99 (231)
                      ..||.+.|.+++|+|++               ..||+|+.||+|+||+....+......+...+.+++|+| ++. +.++
T Consensus        13 ~~gh~~~V~~lafspdg---------------~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQ---------------NLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             EEECSSCEEEEEEETTT---------------TEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE
T ss_pred             ccCCCCCcEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE
Confidence            45899999999999985               458999999999999998776655555567899999999 774 4456


Q ss_pred             cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-----------eeccCCCCCe
Q psy6442         100 HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-----------ESFKGHFGPI  168 (231)
Q Consensus       100 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-----------~~~~~h~~~V  168 (231)
                      .++.+++||..+.+.+..+..+..+..+.  ++|++..+++|+.|+.|++||+.++...           ..+.+|.++|
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~--~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVFVPGKITSID--TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEECSSCEEEEE--CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEcCCCCEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            78999999999888887776555565544  4899999999999999999999887653           3457899999


Q ss_pred             eEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         169 HCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       169 ~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .+++|+|+ +.+|++++.|++| |||+++++....++.
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEec
Confidence            99999996 5789999999999 999999988776654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.8e-21  Score=165.64  Aligned_cols=186  Identities=8%  Similarity=-0.003  Sum_probs=132.3

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCce----eEeccc--ccc------------ccCCCEEEEEeCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK----AASGAA--DFQ------------AKNNTRLISCAEDK   62 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~----~~s~~~--d~~------------~~~~~~l~s~s~D~   62 (231)
                      ++.|++|+  ++.++   +++++|.+.|++++|+|+|.-    +-++..  -+.            ..+++.|++++.||
T Consensus        33 as~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg  107 (588)
T 2j04_A           33 TFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNG  107 (588)
T ss_dssp             CSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTS
T ss_pred             EcCCceee--ccccc---ceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            46777777  54444   455788888888888887621    000000  000            12678899999999


Q ss_pred             CEEEEeCCCCCceEEEEeCC-----cceeEEEccCCCEEEEE-cCCeEEEEECCCcce-------EEeeecc-----cee
Q psy6442          63 TVRLWDVSASAEVQKLEFGA-----VPNSLEISRDGTTITVT-HGSCVTFLDANSLEL-------IKEHKVP-----AQV  124 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~-------~~~~~~~-----~~~  124 (231)
                      +|++||...  ++..+.+..     .+.+++|+||++.++++ .++.+++||......       +..+...     ..+
T Consensus       108 ~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          108 NVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             CEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred             cEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence            999999543  444444222     48899999999988765 589999999887642       3443221     245


Q ss_pred             EEEEEEecCCCCEEEEecCCCeEEEEeCCCcce---eeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE---IESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       125 ~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~---~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ..++  ++|++  +++++.|.++++||...+..   .+++ .+|...|.+++|+  ++.||+++ +++|++||+..++..
T Consensus       186 ~sVa--wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~  258 (588)
T 2j04_A          186 THIV--WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS  258 (588)
T ss_dssp             EEEE--EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred             EEEE--EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE
Confidence            5444  47888  77888899999999987663   3456 4899999999999  68999998 699999999988763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=4.3e-20  Score=156.08  Aligned_cols=183  Identities=22%  Similarity=0.293  Sum_probs=137.0

Q ss_pred             ccCCCe-EeeeecccccEEEEEECCC-CceeEeccccccc-------------------------------------cCC
Q psy6442          12 GDTGDW-IGTFEGHKGCVWGVDINKD-ASKAASGAADFQA-------------------------------------KNN   52 (231)
Q Consensus        12 ~~~g~~-i~~l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~-------------------------------------~~~   52 (231)
                      ..++++ +..+.+|.+.|.++.|+|+ +..+++++.+..+                                     .++
T Consensus       114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  193 (430)
T 2xyi_A          114 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL  193 (430)
T ss_dssp             ----CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred             CCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence            344554 3556789999999999997 6788887654211                                     033


Q ss_pred             C-EEEEEeCCCCEEEEeCCCCCc-------eEEE-EeCCcceeEEEccC-CCEEEE-EcCCeEEEEECCCc---ceEEee
Q psy6442          53 T-RLISCAEDKTVRLWDVSASAE-------VQKL-EFGAVPNSLEISRD-GTTITV-THGSCVTFLDANSL---ELIKEH  118 (231)
Q Consensus        53 ~-~l~s~s~D~ti~iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~-~~~~~~-~~~~~i~~~d~~~~---~~~~~~  118 (231)
                      . .|++++.||+|++||+..+..       ...+ .+...+.+++|+|+ +..+++ +.++.|++||.+..   ......
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV  273 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence            4 899999999999999987432       1222 34567899999994 555544 46899999999876   333443


Q ss_pred             ec-cceeEEEEEEecCCCC-EEEEecCCCeEEEEeCCC-cceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeC
Q psy6442         119 KV-PAQVHSASLLLNSERP-IFVCGGEDLKMYKFDYST-GAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQT  194 (231)
Q Consensus       119 ~~-~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~d~~~-~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~  194 (231)
                      .. ...+..+.+  +|++. ++++|+.|+.|++||++. ...+..+.+|..+|.+++|+|++. +|++++.|+.|+|||+
T Consensus       274 ~~~~~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          274 DAHTAEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             ECCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             ecCCCCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            32 334555554  77776 788999999999999987 566888899999999999999985 7999999999999999


Q ss_pred             CC
Q psy6442         195 NV  196 (231)
Q Consensus       195 ~~  196 (231)
                      ..
T Consensus       352 ~~  353 (430)
T 2xyi_A          352 SK  353 (430)
T ss_dssp             GG
T ss_pred             CC
Confidence            77

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=1.9e-19  Score=151.71  Aligned_cols=196  Identities=14%  Similarity=0.080  Sum_probs=145.8

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC---CEEEEeCCCCCceEEEEeC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK---TVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~---ti~iwd~~~~~~~~~~~~~   81 (231)
                      ++|++|+.+ |..+..+.+|.+.|.+++|+|+|+.               |++++.|+   +|++||+.++++.....+.
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~---------------la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSK---------------LAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSE---------------EEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCE---------------EEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            799999986 6667889999999999999998654               67777775   9999999998876555566


Q ss_pred             CcceeEEEccCCCEEEEE-c-C--CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-CC--eEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVT-H-G--SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-DL--KMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~-~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~--~i~~~d~~~  154 (231)
                      ..+.+++|+||++.++.. . +  ..|.+||..+.+..........+...  .++|+++.+++++. ++  .|++||..+
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~--~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP--TWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE--EECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccce--EECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            778999999999977643 2 3  35899998876654333333334443  44899998887765 34  788899887


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSED---GTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ++ ...+..|...+.+++|+|||++|++++.+   ..|.+||+.+++...+.. .  .....++|.++|.+
T Consensus       301 ~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~--~~~~~~~~spdg~~  367 (415)
T 2hqs_A          301 GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T--FLDETPSLAPNGTM  367 (415)
T ss_dssp             SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S--SSCEEEEECTTSSE
T ss_pred             CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C--CCcCCeEEcCCCCE
Confidence            66 34455677789999999999999988764   589999999988754322 1  24445566666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=7.7e-18  Score=136.60  Aligned_cols=202  Identities=11%  Similarity=0.143  Sum_probs=150.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~~~   80 (231)
                      +.+++|++|+..+|+.+..+..+...+ .+.|+|+++.+              ++++..+++|.+||..+++. ...+..
T Consensus        17 ~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l--------------~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A           17 QHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNV--------------VVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEE--------------EEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             cCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEE--------------EEEeCCCCeEEEEECCCCceeEEeccc
Confidence            457899999999999999888777777 99999986542              34444588999999999887 666766


Q ss_pred             CCccee-EEEccCCCEEEEEcCC----eEEEEECCCcceEEeeeccceeEEEEEEecCCCCE-EEEecCCCe-EEEEeCC
Q psy6442          81 GAVPNS-LEISRDGTTITVTHGS----CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPI-FVCGGEDLK-MYKFDYS  153 (231)
Q Consensus        81 ~~~~~~-v~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~-i~~~d~~  153 (231)
                      ...+.. ++++|+++.+++....    .+.+||..+.+.+...........+.  ++|+++. +++...+.. +++|++.
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA--ISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE--ECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE--ECCCCCEEEEEecCCCceEEEEEEC
Confidence            666777 9999999988876554    89999999888877766554444444  4888874 445455577 9999986


Q ss_pred             Cccee----eeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCe---eeeeeccCCcccCCCCCCccccc
Q psy6442         154 TGAEI----ESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNVGKT---YGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       154 ~~~~~----~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ....+    .....+...+..++|+|+|++ ++++..++.|++||+.+++.   ...+..  +..+..++++++|+.
T Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGST  234 (331)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSE
T ss_pred             CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCE
Confidence            43222    111123456899999999985 56666799999999999987   666653  455667778887774

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=3.1e-18  Score=149.15  Aligned_cols=186  Identities=14%  Similarity=0.191  Sum_probs=146.9

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeC--CCCCceEEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV--SASAEVQKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~--~~~~~~~~~~   79 (231)
                      +.|++|++||..+++++.++..+.. ++.+.|+|++               ++|++++.|++|++||+  .+++++..+.
T Consensus       156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg---------------~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG---------------RYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS---------------CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC---------------CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            4689999999999999999984333 8999999985               45788899999999999  7888888888


Q ss_pred             eCCcceeEEEcc----CCCEEEEEc--CCeEEEEECCCcceEEeeeccc----------eeEEEEEEecCCC-CEEEEec
Q psy6442          80 FGAVPNSLEISR----DGTTITVTH--GSCVTFLDANSLELIKEHKVPA----------QVHSASLLLNSER-PIFVCGG  142 (231)
Q Consensus        80 ~~~~~~~v~~~~----~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~g~  142 (231)
                      ....+..++++|    +++.++++.  ++.+.+||..+.++++.+....          ......+..++++ .++++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            888899999999    999888764  6899999999888877765421          1122233446654 4566778


Q ss_pred             CCCeEEEEeCCCcceee--eccCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCeeeeee
Q psy6442         143 EDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~--~~~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .+++|++||..+.+.+.  .+ .+...+.+++|+|++++|+ ++..+++|++||+.+++......
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence            88999999998765443  33 3566788999999999765 45578999999999999887766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=1.1e-17  Score=135.47  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=146.7

Q ss_pred             CcCCCceeeeccCCCeEeeeeccc-c-cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHK-G-CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~-~-~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      +.+++|++|+..+++.+..+.... . .+..+.|+|+++.+              +++++.+++|.+||+.+++.+..+.
T Consensus         8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l--------------~v~~~~~~~v~~~d~~~~~~~~~~~   73 (337)
T 1pby_B            8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA--------------YATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE--------------EEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEE--------------EEEeCCCCeEEEEECCCCCeEeeEE
Confidence            468999999999999998876332 2 47889999986543              4666778999999999998887777


Q ss_pred             eCC------cceeEEEccCCCEEEEE-------------cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442          80 FGA------VPNSLEISRDGTTITVT-------------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        80 ~~~------~~~~v~~~~~~~~~~~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (231)
                      ...      .+..++++|+++.++++             .++.+.+||..+.+..........+..+.  ++|++..++.
T Consensus        74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~  151 (337)
T 1pby_B           74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLA--WARDGSKLYG  151 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEE--ECTTSSCEEE
T ss_pred             cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeE--ECCCCCEEEE
Confidence            654      78899999999988776             35899999998877776665544444334  4788886666


Q ss_pred             ecCCCeEEEEeCCCcceeeeccCC--------------------------------------------------------
Q psy6442         141 GGEDLKMYKFDYSTGAEIESFKGH--------------------------------------------------------  164 (231)
Q Consensus       141 g~~d~~i~~~d~~~~~~~~~~~~h--------------------------------------------------------  164 (231)
                      +  ++.|++||..+++.+..+..+                                                        
T Consensus       152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            6  577888988776655433211                                                        


Q ss_pred             ----------CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         165 ----------FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       165 ----------~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                                ...+.+++|+||+++++++  ++.|++||+.+++....+..  +.....++++++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~  292 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGS  292 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSC
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCC
Confidence                      1234569999999988888  79999999999988776653  33445556666665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.80  E-value=1.4e-17  Score=133.85  Aligned_cols=142  Identities=23%  Similarity=0.391  Sum_probs=116.3

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      .|++ +.|++|+|||+.+++++..+..   ...+.+++|+|+++.++. +.++.+++|+..+.+.++....+... ...+
T Consensus        38 ~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-~~~~  115 (318)
T 4ggc_A           38 VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSL  115 (318)
T ss_dssp             EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEEE
T ss_pred             EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-EEEe
Confidence            3554 4699999999999999888764   346899999999998765 56889999999998888776654322 1222


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCc-ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTG-AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~-~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                        ...+..+++++.++.++.|+.... ..+..+.+|...+..+++++++++|++++.|++|+|||+++++.
T Consensus       116 --~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          116 --SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             --EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             --ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence              345678999999999999998765 45677889999999999999999999999999999999988763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.80  E-value=1.7e-17  Score=139.73  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=131.0

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCC--EEEEeCCCCCceEEEEeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT--VRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t--i~iwd~~~~~~~~~~~~~~   82 (231)
                      .+|++|+..+|+.. .+.+|.+.+.++.|+|+|+.+              +++++.|+.  |++||+.+++......+..
T Consensus       203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~l--------------a~~~~~~g~~~i~~~d~~~~~~~~l~~~~~  267 (415)
T 2hqs_A          203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL--------------AFALSKTGSLNLYVMDLASGQIRQVTDGRS  267 (415)
T ss_dssp             CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE--------------EEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred             cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEE--------------EEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence            48999999999876 478899999999999987653              236666655  9999998887644334456


Q ss_pred             cceeEEEccCCCEEEEEc--CC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---CeEEEEeCCCc
Q psy6442          83 VPNSLEISRDGTTITVTH--GS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---LKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~~d~~~~  155 (231)
                      .+..++|+|+++.++...  ++  .+.+||..+.+..........+.  .+.++|+++.+++++.+   ..|++||+.++
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~--~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ--DADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE--EEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCccc--CeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            788999999999776543  23  67788987765433222222333  34458999988887654   68999999887


Q ss_pred             ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCe
Q psy6442         156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGKT  199 (231)
Q Consensus       156 ~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~~  199 (231)
                      +. ..+..|. .+.+++|+|||++|++++.++   .|.+||+..++.
T Consensus       346 ~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          346 GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             CE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             CE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            75 4455564 899999999999999998877   799999975543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=5.2e-17  Score=128.53  Aligned_cols=217  Identities=11%  Similarity=0.018  Sum_probs=149.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccc------cc----------------------ccCCC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD------FQ----------------------AKNNT   53 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d------~~----------------------~~~~~   53 (231)
                      +.|+++++|+..+++.. .+..|.+.|.++.|+|+++.++.+...      ..                      ..+++
T Consensus        19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            57899999999888766 467799999999999999988875321      00                      01667


Q ss_pred             EEEEEe--CCCCEEEEeC--CCCCceEEEEeCCcceeEEEccCCCEEEE--EcCCeEEEEEC--CCcceEEeeeccceeE
Q psy6442          54 RLISCA--EDKTVRLWDV--SASAEVQKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDA--NSLELIKEHKVPAQVH  125 (231)
Q Consensus        54 ~l~s~s--~D~ti~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~--~~~~~~~~~~~~~~~~  125 (231)
                      .|++++  .++..+||.+  ..+. ...+.....+..++|+|+++.+++  ..++.+.+|+.  ..............+.
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  176 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND  176 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred             EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence            888888  4456666654  4443 334444455788899999997763  34677777774  3333332222233344


Q ss_pred             EEEEEecCCCCEEEEec-CCCeEEEEeCC-CcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC-----------CcEEEE
Q psy6442         126 SASLLLNSERPIFVCGG-EDLKMYKFDYS-TGAEIESFKGHFGPIHCVKFSPDGELYASGSED-----------GTLRLW  192 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~-~d~~i~~~d~~-~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d-----------~~v~iw  192 (231)
                      ..  .++|++..++.++ .++.+.+|++. .+..+..+..|...+.+++|+|++++|+.++.+           +.|.+|
T Consensus       177 ~~--~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          177 GP--DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EE--EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             cc--eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            43  4488888777654 57777777765 455567777888899999999999999888766           569999


Q ss_pred             eCCCCCeeeeeecc-CCcccCCCCCCccccc
Q psy6442         193 QTNVGKTYGLWKCI-EGGLNNSLGLDSSGHL  222 (231)
Q Consensus       193 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  222 (231)
                      |+.+++...+.... .......++|.++|..
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             ETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             ecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            99998865544321 1334556777777653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=9.4e-18  Score=149.88  Aligned_cols=213  Identities=11%  Similarity=-0.019  Sum_probs=147.9

Q ss_pred             CcCCCceeeeccCCCeEeeeecccc---cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~---~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      +.||++++|+..+|+....+.+|..   .|.+++|+|||+.++++..+....      ..+.++++.+||+.+++. ..+
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~------~~~~~~~i~~~d~~~~~~-~~l  106 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY------QHSYTGYYVLSKIPHGDP-QSL  106 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS------SSCCCSEEEEEESSSCCC-EEC
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce------eecceeeEEEEECCCCce-Eec
Confidence            4689999999999999888888876   499999999987765543322111      112357899999998876 233


Q ss_pred             EeC----CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc-cee----------------EEEEEEecCCCCE
Q psy6442          79 EFG----AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP-AQV----------------HSASLLLNSERPI  137 (231)
Q Consensus        79 ~~~----~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~  137 (231)
                      ...    ..+..++|+||++.++...++.+.+|+..+.+..+....+ ..+                ....+.++|+++.
T Consensus       107 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~  186 (723)
T 1xfd_A          107 DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR  186 (723)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred             cCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE
Confidence            221    2377899999999887766789999998876655443321 111                0023445999998


Q ss_pred             EEEecCCC----------------------------------eEEEEeCCCcceeeeccCC------CCCeeEEEEcCCC
Q psy6442         138 FVCGGEDL----------------------------------KMYKFDYSTGAEIESFKGH------FGPIHCVKFSPDG  177 (231)
Q Consensus       138 ~~~g~~d~----------------------------------~i~~~d~~~~~~~~~~~~h------~~~V~~v~~spd~  177 (231)
                      +++++.+.                                  .|++||+.+++....+..+      ...+.+++|||||
T Consensus       187 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg  266 (723)
T 1xfd_A          187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST  266 (723)
T ss_dssp             EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS
T ss_pred             EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC
Confidence            88876432                                  7999999887755555543      6678999999999


Q ss_pred             CEEEEeeC----CCcEEEEeCCCCCeeeeeeccCCccc----CCCCCCcccc
Q psy6442         178 ELYASGSE----DGTLRLWQTNVGKTYGLWKCIEGGLN----NSLGLDSSGH  221 (231)
Q Consensus       178 ~~laS~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  221 (231)
                      ++|++.+.    +..|++||+.+++...+.+...+.+.    ..+.|.++|+
T Consensus       267 ~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          267 KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence            98877643    36799999999987666544322321    2456666665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.7e-16  Score=129.38  Aligned_cols=202  Identities=14%  Similarity=0.181  Sum_probs=150.3

Q ss_pred             cCCCceeeeccCCCeEeeeeccccc---------EEEEEECCCCceeEeccccccccCCCEEEEE-eCCCCEEEEeCCCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGC---------VWGVDINKDASKAASGAADFQAKNNTRLISC-AEDKTVRLWDVSAS   72 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~---------V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~-s~D~ti~iwd~~~~   72 (231)
                      .+++|.+|+..+|+.+..+..+.+.         +..+.|+|+++.+              +++. +.+++|.+||..++
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l--------------~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV--------------YISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE--------------EEEEESSSCEEEEEETTTT
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE--------------EEEecCCCceEEEEcCCCC
Confidence            4688999999999998888766533         6889999986543              2233 35789999999999


Q ss_pred             CceEEEE-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEec-CCCe
Q psy6442          73 AEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGG-EDLK  146 (231)
Q Consensus        73 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~-~d~~  146 (231)
                      +.+..+. ....+..++++|++..++++. ++.+.+||..+.+........   .......+.+++++..++.++ .++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE  254 (353)
T ss_dssp             EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred             ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence            8887777 455688999999999887764 678999999988877666541   111122334478887655554 4589


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      |++||..+++.+..+....  ...++|+|++++ +++...++.|.+||..+++....+..  +.....++++++|+.
T Consensus       255 v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~  327 (353)
T 3vgz_A          255 VLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKT  327 (353)
T ss_dssp             EEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCE
Confidence            9999999988877776433  367999999985 55555799999999999998877764  345566777777763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=9.8e-17  Score=130.84  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=150.2

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-   82 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-   82 (231)
                      +++|++|+..+++.+..+... ..+..+.|+|+++.+              +++...+++|.+||..+++.+..+.... 
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l--------------~v~~~~~~~v~~~d~~~~~~~~~~~~~~~  132 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTL--------------WFGNTVNSAVTAIDAKTGEVKGRLVLDDR  132 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEE--------------EEEETTTTEEEEEETTTCCEEEEEESCCC
T ss_pred             CccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEE--------------EEEecCCCEEEEEeCCCCeeEEEEecCCC
Confidence            678999999999998887743 446788888876542              4566668999999999999888777632 


Q ss_pred             ---------cceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeee-ccceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          83 ---------VPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHK-VPAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        83 ---------~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                               .+..++++|++..++++.   ++.+.+||..+.+...... .......+.  +++++..++.++.++.|++
T Consensus       133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~i~~  210 (353)
T 3vgz_A          133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA--LDSEGKRLYTTNADGELIT  210 (353)
T ss_dssp             CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE--EETTTTEEEEECTTSEEEE
T ss_pred             ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE--ECCCCCEEEEEcCCCeEEE
Confidence                     267899999999877654   5689999999888777665 222233333  4788888888888999999


Q ss_pred             EeCCCcceeeeccC----CCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         150 FDYSTGAEIESFKG----HFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       150 ~d~~~~~~~~~~~~----h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ||..+++.+..+..    +...+.+++|+|++++++.++ .++.|.+||..+++.......-.   ...++++++|+
T Consensus       211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~  284 (353)
T 3vgz_A          211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARN  284 (353)
T ss_dssp             EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTT
T ss_pred             EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCC
Confidence            99999887766543    556788999999998665554 56999999999999877766422   23455666654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.77  E-value=4.6e-17  Score=136.96  Aligned_cols=172  Identities=14%  Similarity=0.151  Sum_probs=126.0

Q ss_pred             CcCCCceeeeccCC-CeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           2 CVDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g-~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      +.|+++++|+.... ..+.++.+|.+.+..+.++|+++.+++++.|..+.                              
T Consensus       206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  285 (420)
T 4gga_A          206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  285 (420)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred             eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence            56788888887654 45788999999999999999999999987653211                              


Q ss_pred             --CCCEEEE--EeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE---cCCeEEEEECCCcceEEeeecc-c
Q psy6442          51 --NNTRLIS--CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT---HGSCVTFLDANSLELIKEHKVP-A  122 (231)
Q Consensus        51 --~~~~l~s--~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~-~  122 (231)
                        ....+++  ++.|++|++||+.++++...+.....+.++.++|++..++++   .++.|++||..+.+.+..+..+ .
T Consensus       286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~  365 (420)
T 4gga_A          286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS  365 (420)
T ss_dssp             TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred             CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence              3345554  458999999999999999988888899999999999987664   3689999999999888877654 3


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp  175 (231)
                      .+..+.+  +|++..+++|+.|++|++||+....+....+.+...+....|..
T Consensus       366 ~V~~l~~--spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~  416 (420)
T 4gga_A          366 RVLSLTM--SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIH  416 (420)
T ss_dssp             CEEEEEE--CTTSSCEEEEETTTEEEEECCSCSSCC-----------------
T ss_pred             CEEEEEE--cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccCC
Confidence            5655554  89999999999999999999977666666666665554444433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=2.3e-16  Score=127.52  Aligned_cols=184  Identities=17%  Similarity=0.193  Sum_probs=140.2

Q ss_pred             cCCCceeeeccCCCeEeeeec-c----cccEEEEEECCCCceeEeccccccccCCCEEEEEe------------CCCCEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEG-H----KGCVWGVDINKDASKAASGAADFQAKNNTRLISCA------------EDKTVR   65 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~g-H----~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s------------~D~ti~   65 (231)
                      .+++|++|+..+++.+..+.. +    ...+..+.|+|+++.               |++++            .++.|.
T Consensus        54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~---------------l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT---------------LAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE---------------EEEEEEEEEECSSCEEECCCEEE
T ss_pred             CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE---------------EEEEecccccccccccccCceEE
Confidence            467899999999998887663 2    235677889988655               44443            579999


Q ss_pred             EEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-----------------------
Q psy6442          66 LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-----------------------  122 (231)
Q Consensus        66 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------------------  122 (231)
                      +||+.+++.+..+.....+..++++|+++.++++ ++.+.+||..+.+....+....                       
T Consensus       119 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  197 (337)
T 1pby_B          119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             EEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred             EEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCc
Confidence            9999988888777777778899999999987776 6789999987765543322110                       


Q ss_pred             ------------------------------------------eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee
Q psy6442         123 ------------------------------------------QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES  160 (231)
Q Consensus       123 ------------------------------------------~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~  160 (231)
                                                                ......+.+++++..++++  ++.|++||+.+++.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~  275 (337)
T 1pby_B          198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce
Confidence                                                      0001124457888887777  68999999998888777


Q ss_pred             ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       161 ~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +..+ ..+.+++|+|++++|++++.++.|++||+.+++....++.
T Consensus       276 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          276 VPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            6533 4678999999999888889999999999999998887764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=3.3e-16  Score=127.36  Aligned_cols=197  Identities=13%  Similarity=0.049  Sum_probs=140.4

Q ss_pred             CcCCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +.+++|++|+..+++.+.++..+. ..+..+.|+|+++.+              +++...+++|.+||+.+++.+..+..
T Consensus        18 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~--------------~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           18 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA--------------YVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE--------------EEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             CCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE--------------EEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            468999999999999998887554 246788999986542              45666789999999999888777765


Q ss_pred             CC-------cceeEEEccCCCEEEEEc-------------CCeEEEEECCCcce---EEeeeccceeEEEEEEecCCCCE
Q psy6442          81 GA-------VPNSLEISRDGTTITVTH-------------GSCVTFLDANSLEL---IKEHKVPAQVHSASLLLNSERPI  137 (231)
Q Consensus        81 ~~-------~~~~v~~~~~~~~~~~~~-------------~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  137 (231)
                      ..       .+..++++|+++.++++.             .+.+.+||..+.+.   +.....+..+..+.  +++++. 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR--AADDGS-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE--ECTTSC-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee--ECCCCc-
Confidence            33       278999999999887764             47899999877433   23333333333333  478888 


Q ss_pred             EEEecCCCeEEEEeCCCcceeeeccCCC----------------------------------------------------
Q psy6442         138 FVCGGEDLKMYKFDYSTGAEIESFKGHF----------------------------------------------------  165 (231)
Q Consensus       138 ~~~g~~d~~i~~~d~~~~~~~~~~~~h~----------------------------------------------------  165 (231)
                      ++.++.+  |++||..+++.+..+..+.                                                    
T Consensus       161 l~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEccCc--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            4444433  9999998887665554221                                                    


Q ss_pred             ----------------CCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         166 ----------------GPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       166 ----------------~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                                      ..+.+++|+| ++++++++  ++.|.+||+.+++....+..  +.....++++++|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGD  307 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSS
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCC
Confidence                            1345778889 99988888  88999999999988776653  23344556666554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=7.1e-18  Score=150.84  Aligned_cols=195  Identities=10%  Similarity=0.000  Sum_probs=134.6

Q ss_pred             cCCCceeeeccCCCeEeeeecccc---cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~---~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      .|++|++|+..+|+....+.+|..   .|.++.|+|||+.++.++....      ...-+.|++|++||+.+++.+....
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~------~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK------LWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE------CSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCce------eEEeecceEEEEEECCCCcccccee
Confidence            589999999999998887777755   3899999999776543221000      0000127899999999887621122


Q ss_pred             eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-e-eE---------------EEEEEecCCCCEEEEec
Q psy6442          80 FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-Q-VH---------------SASLLLNSERPIFVCGG  142 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~-~~---------------~~~~~~~~~~~~~~~g~  142 (231)
                      +...+..++|+|||+.++...++.|.+|+..+.+..+...... . +.               ...+.++|+++.+++++
T Consensus       108 l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          108 LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            3456788999999998887778899999987766543321111 0 00               01344599999998876


Q ss_pred             CCC----------------------------------eEEEEeCCCccee--------eeccCCCCCeeEEEEcCCCCEE
Q psy6442         143 EDL----------------------------------KMYKFDYSTGAEI--------ESFKGHFGPIHCVKFSPDGELY  180 (231)
Q Consensus       143 ~d~----------------------------------~i~~~d~~~~~~~--------~~~~~h~~~V~~v~~spd~~~l  180 (231)
                      .|.                                  .|++||+.+++..        ..+.+|...+.+++||||++++
T Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~  267 (719)
T 1z68_A          188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC  267 (719)
T ss_dssp             EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred             ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence            541                                  7889999887642        2345788899999999998877


Q ss_pred             EEeeCC----CcEEEEe----CCCCCeeeee
Q psy6442         181 ASGSED----GTLRLWQ----TNVGKTYGLW  203 (231)
Q Consensus       181 aS~s~d----~~v~iwd----~~~~~~~~~~  203 (231)
                      ++....    ..|.+||    +.+++...+.
T Consensus       268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             EEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             EEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence            775432    2488899    8777765555

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=2.2e-17  Score=140.03  Aligned_cols=148  Identities=14%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCC----------------CceEEEEeCCcceeEEEccCCCEEEE---E--cCCeEEEEECC
Q psy6442          52 NTRLISCAEDKTVRLWDVSAS----------------AEVQKLEFGAVPNSLEISRDGTTITV---T--HGSCVTFLDAN  110 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~---~--~~~~i~~~d~~  110 (231)
                      +..+++++.|+ +++|+....                .....+.+...+.+++|+|+++.+++   +  .++.+++||..
T Consensus        48 ~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~  126 (434)
T 2oit_A           48 YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR  126 (434)
T ss_dssp             TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc
Confidence            45678888887 888874210                01123334567999999999998884   2  35799999976


Q ss_pred             Cc--------ceE---Eeee-ccceeEEEEEEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442         111 SL--------ELI---KEHK-VPAQVHSASLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG  177 (231)
Q Consensus       111 ~~--------~~~---~~~~-~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~  177 (231)
                      +.        +.+   .... ....+..+.+  +|+ +.++++++.|++|++||++++..+....+|...|.+++|+|+|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg  204 (434)
T 2oit_A          127 TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG  204 (434)
T ss_dssp             HHHCTTCSSCCCSEEEECCCSGGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS
T ss_pred             ccccCCcCCcceeeeeeccCCCCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC
Confidence            54        111   2211 1234555554  776 7889999999999999999887776677899999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         178 ELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       178 ~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+|++++.|++|++||.+ ++.....
T Consensus       205 ~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          205 KQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             SCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             CEEEEEcCCCcEEEEccC-Ccccccc
Confidence            999999999999999998 5554444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=7e-16  Score=134.29  Aligned_cols=202  Identities=13%  Similarity=0.072  Sum_probs=148.7

Q ss_pred             CcCCCceeeec--cCCCeEeeeecccccEEEEEECC----CCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCCCCc
Q psy6442           2 CVDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINK----DASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSASAE   74 (231)
Q Consensus         2 ~~d~~~~~~~~--~~g~~i~~l~gH~~~V~~~~~~~----~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~~~~   74 (231)
                      +.|++|++|+.  .+++.+.++.. ...+..+.|+|    +|++               |++++ .|++|.+||..++++
T Consensus       197 ~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~---------------l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          197 GRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRY---------------TIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTE---------------EEEEEEESSEEEEEETTTCCE
T ss_pred             CCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCE---------------EEEEEccCCeEEEEecccccc
Confidence            45799999999  89999999884 45579999999    8654               55565 589999999999998


Q ss_pred             eEEEEeC------------CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEE--eeeccceeEEEEEEecCCCCEE
Q psy6442          75 VQKLEFG------------AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIK--EHKVPAQVHSASLLLNSERPIF  138 (231)
Q Consensus        75 ~~~~~~~------------~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  138 (231)
                      +..+...            ..+..+.++|++..++++  .++.|.+||..+.+.+.  .+.........  .++|+++++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~--~~spdg~~l  338 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG--GWDSSHRYF  338 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE--EECTTSCEE
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc--eECCCCCEE
Confidence            8887642            256789999998877665  45799999987755443  23222223333  348898865


Q ss_pred             E-EecCCCeEEEEeCCCcceeeeccC----CCCCeeEEEEcCC-CCEEEEee-CCCcEEEEeCCC-------CCeeeeee
Q psy6442         139 V-CGGEDLKMYKFDYSTGAEIESFKG----HFGPIHCVKFSPD-GELYASGS-EDGTLRLWQTNV-------GKTYGLWK  204 (231)
Q Consensus       139 ~-~g~~d~~i~~~d~~~~~~~~~~~~----h~~~V~~v~~spd-~~~laS~s-~d~~v~iwd~~~-------~~~~~~~~  204 (231)
                      + ++..+.+|.+||..+++++..+..    |.+....+ ++|+ +.+++|+. .|++|+|||+.+       .+..+.++
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            5 455688999999999998887764    54433333 5787 67788876 689999999988       78888887


Q ss_pred             ccCCcccCCCCCCcccccc
Q psy6442         205 CIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~  223 (231)
                      .. +..+.+|.+.++|+.+
T Consensus       418 ~~-g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          418 GQ-GGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             CS-CSCCCCEECCTTCCEE
T ss_pred             cC-CCCceEEEcCCCCCcE
Confidence            53 3446677777777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.74  E-value=6.3e-17  Score=144.98  Aligned_cols=199  Identities=12%  Similarity=-0.003  Sum_probs=144.2

Q ss_pred             CceeeeccCCCeEeeeeccccc------------------------EEEEEECCCCceeEeccccccccCCCEEEEEeCC
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGC------------------------VWGVDINKDASKAASGAADFQAKNNTRLISCAED   61 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~------------------------V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D   61 (231)
                      ++++|+..+|+....+..|...                        |.+++|+|||+.               |++++. 
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~---------------l~~~~~-  128 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR---------------LLFPLG-  128 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE---------------EEEEET-
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE---------------EEEEeC-
Confidence            8999999999988777765433                        788999998654               555554 


Q ss_pred             CCEEEEeCCCC---CceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccce-eE------------
Q psy6442          62 KTVRLWDVSAS---AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ-VH------------  125 (231)
Q Consensus        62 ~ti~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~------------  125 (231)
                      ++|++||+.++   ...........+..++|+||++.++...++.|.+||..+.+..+....... +.            
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence            89999999987   544333345678899999999988877778999999987665543322211 00            


Q ss_pred             --EEEEEecCCCCEEEEecCCC---------------------------------eEEEEeCCC-cceeeecc--CCCCC
Q psy6442         126 --SASLLLNSERPIFVCGGEDL---------------------------------KMYKFDYST-GAEIESFK--GHFGP  167 (231)
Q Consensus       126 --~~~~~~~~~~~~~~~g~~d~---------------------------------~i~~~d~~~-~~~~~~~~--~h~~~  167 (231)
                        ...+.++|+++.+++++.|.                                 .|++||+.+ ++......  .|...
T Consensus       209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  288 (741)
T 2ecf_A          209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY  288 (741)
T ss_dssp             CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred             ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence              12244589999888876554                                 789999988 76544332  47788


Q ss_pred             eeEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCeeeeeeccCCcc---cCCCCCCcccc
Q psy6442         168 IHCVKFSPDGELYASGSE-----DGTLRLWQTNVGKTYGLWKCIEGGL---NNSLGLDSSGH  221 (231)
Q Consensus       168 V~~v~~spd~~~laS~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  221 (231)
                      +.+++| |||++|+.++.     +..|++||+.+++...+++...+.+   ...++|.++|+
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence            999999 99999887653     6779999999999877776544332   23556666665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=5.6e-16  Score=125.55  Aligned_cols=178  Identities=8%  Similarity=0.048  Sum_probs=133.1

Q ss_pred             CCCceeeeccCCCe-EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-C--CEEEEeCCCCCceEEEE
Q psy6442           4 DGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-K--TVRLWDVSASAEVQKLE   79 (231)
Q Consensus         4 d~~~~~~~~~~g~~-i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-~--ti~iwd~~~~~~~~~~~   79 (231)
                      +++|++|+..+++. ...+..+..+..++.|+|+++.               |+++..+ +  +|.+||+.+++.+..+.
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~---------------l~~~~~~~~~~~i~v~d~~~~~~~~~~~  125 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQF---------------AVTVTGLNHPFNMQSYSFLKNKFISTIP  125 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSE---------------EEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEECCCCceeEEecccCCCCccceEECCCCCE---------------EEEecCCCCcccEEEEECCCCCeEEEEE
Confidence            67899999999998 8888888777766999998654               4533334 2  89999999998888888


Q ss_pred             eCCcceeEEEccCCCEEEEE--cCCe-EEEEECCCcceEEe-----eeccceeEEEEEEecCCCCE-EEEecCCCeEEEE
Q psy6442          80 FGAVPNSLEISRDGTTITVT--HGSC-VTFLDANSLELIKE-----HKVPAQVHSASLLLNSERPI-FVCGGEDLKMYKF  150 (231)
Q Consensus        80 ~~~~~~~v~~~~~~~~~~~~--~~~~-i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~~~  150 (231)
                      ....+..++++|+++.++++  .++. +.+|+......+..     ........  .+.++|+++. ++++..++.|++|
T Consensus       126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~spdg~~l~v~~~~~~~v~v~  203 (331)
T 3u4y_A          126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF--NITFTPDGNFAFVANLIGNSIGIL  203 (331)
T ss_dssp             CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE--EEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc--ceEECCCCCEEEEEeCCCCeEEEE
Confidence            77788999999999866654  3366 99999765332211     11112233  3445889985 4555678999999


Q ss_pred             eCCCcce---eeeccCCCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCe
Q psy6442         151 DYSTGAE---IESFKGHFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       151 d~~~~~~---~~~~~~h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~~~~  199 (231)
                      |+.+++.   +..+..+ ..+..++|+|||++|+ +...++.|.+||..+++.
T Consensus       204 d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          204 ETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             ECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            9998887   7777644 5678999999999654 445688899999999887

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=1.6e-16  Score=141.64  Aligned_cols=201  Identities=9%  Similarity=0.046  Sum_probs=137.2

Q ss_pred             cCCCceeeeccCCCeE-eeeeccc-----------------ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCE
Q psy6442           3 VDGKPMLRQGDTGDWI-GTFEGHK-----------------GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTV   64 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i-~~l~gH~-----------------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti   64 (231)
                      .|+ | +|+..+|+.+ ..+..|.                 ..|.+++|+|+ +.+              +++  .|++|
T Consensus        43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~--------------~~~--~~~~i  103 (706)
T 2z3z_A           43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLV--------------VLF--TQGGL  103 (706)
T ss_dssp             TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEE--------------EEE--ETTEE
T ss_pred             CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeE--------------EEE--ECCEE
Confidence            355 7 9999999885 5666554                 45999999997 432              233  35999


Q ss_pred             EEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCC-----cceEEeeeccce-e------------EE
Q psy6442          65 RLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS-----LELIKEHKVPAQ-V------------HS  126 (231)
Q Consensus        65 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~-~------------~~  126 (231)
                      ++||+.+++..........+..++|+||++.++...++.|.+|+..+     .+..+....... +            ..
T Consensus       104 ~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~  183 (706)
T 2z3z_A          104 VGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIE  183 (706)
T ss_dssp             EEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCC
T ss_pred             EEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCC
Confidence            99999988766555555678899999999988888889999999877     555443222211 1            01


Q ss_pred             EEEEecCCCCEEEEec---------------------------------CCCeEEEEeCCCcceeeec--cCCCCCeeEE
Q psy6442         127 ASLLLNSERPIFVCGG---------------------------------EDLKMYKFDYSTGAEIESF--KGHFGPIHCV  171 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~---------------------------------~d~~i~~~d~~~~~~~~~~--~~h~~~V~~v  171 (231)
                      ..+.++|+++.+++++                                 .+..|++||+.+++.....  ..|...+.++
T Consensus       184 ~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  263 (706)
T 2z3z_A          184 KGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNL  263 (706)
T ss_dssp             CSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEE
T ss_pred             ceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeE
Confidence            2334589999998876                                 4467999999887754443  2577789999


Q ss_pred             EEcCCCCEEEEeeCCC-----cEEEEeCCCCC-eeeeeeccCCcc---cCCCCCCc--cccc
Q psy6442         172 KFSPDGELYASGSEDG-----TLRLWQTNVGK-TYGLWKCIEGGL---NNSLGLDS--SGHL  222 (231)
Q Consensus       172 ~~spd~~~laS~s~d~-----~v~iwd~~~~~-~~~~~~~~~~~~---~~~~~~~~--~~~~  222 (231)
                      +|+|||++|++++.++     .|++||+.+++ ...+.......+   ...+.|.+  +|++
T Consensus       264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~  325 (706)
T 2z3z_A          264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF  325 (706)
T ss_dssp             EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred             EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence            9999999999988776     89999999994 333333222222   24456666  6653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=9.3e-16  Score=124.69  Aligned_cols=195  Identities=12%  Similarity=0.074  Sum_probs=133.6

Q ss_pred             cCCCceeeeccCCCeEeeeeccc------ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC---
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHK------GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA---   73 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~------~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~---   73 (231)
                      .+++|++|+..+++.+..+..+.      ..+..+.|+|+++.++.+..+........   ...+++|.+||+.+++   
T Consensus        63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~---~~~~~~i~~~d~~~~~~~~  139 (349)
T 1jmx_B           63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY---VVKPPRLEVFSTADGLEAK  139 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE---EECCCEEEEEEGGGGGGBC
T ss_pred             CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc---ccCCCeEEEEECCCccccc
Confidence            57889999999998887776332      23678899998765443322100000000   0114899999998743   


Q ss_pred             ceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-------------------------ee----
Q psy6442          74 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-------------------------QV----  124 (231)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------------~~----  124 (231)
                      .+........+.+++++|+++ +++. +..+.+||..+.+....+....                         ..    
T Consensus       140 ~~~~~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          140 PVRTFPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             CSEEEECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eeeeccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            334455556688999999999 6554 3459999988776655433221                         00    


Q ss_pred             --------------------------------------EEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCCC
Q psy6442         125 --------------------------------------HSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF  165 (231)
Q Consensus       125 --------------------------------------~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~  165 (231)
                                                            ....+.++| ++..++++  ++.|++||+.+++.+..+.. .
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~  294 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-D  294 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-S
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-C
Confidence                                                  011222357 88887777  78999999999888777653 3


Q ss_pred             CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         166 GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       166 ~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..+.+++|+|++++|++++.++.|++||+.+++....++.
T Consensus       295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            4578999999998888888899999999999998877764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.71  E-value=2e-15  Score=122.33  Aligned_cols=177  Identities=11%  Similarity=0.116  Sum_probs=123.1

Q ss_pred             CcCCCceeeecc-CCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-CCEEEEeCC--CCCc-
Q psy6442           2 CVDGKPMLRQGD-TGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-KTVRLWDVS--ASAE-   74 (231)
Q Consensus         2 ~~d~~~~~~~~~-~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-~ti~iwd~~--~~~~-   74 (231)
                      +.|+.|++|+.+ +|+  .+.. ..|.+.+..++|+|+++.               |++++.+ ++|++|++.  +++. 
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~---------------l~~~~~~~~~v~~~~~~~~~~~~~   75 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY---------------LYVGVRPEFRVLAYRIAPDDGALT   75 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE---------------EEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE---------------EEEeecCCCeEEEEEecCCCCcee
Confidence            468999999984 453  3443 347778899999998554               5666665 999999987  4443 


Q ss_pred             -eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECC---CcceEEeeeccceeEEEEEEecCCCCEEEEec-CCCeE
Q psy6442          75 -VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDAN---SLELIKEHKVPAQVHSASLLLNSERPIFVCGG-EDLKM  147 (231)
Q Consensus        75 -~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i  147 (231)
                       +..+.....+..++++|+++.++++.  ++.+.+||..   .............+..+.  ++|++..+++++ .++.|
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v  153 (343)
T 1ri6_A           76 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN--ISPDNRTLWVPALKQDRI  153 (343)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE--ECTTSSEEEEEEGGGTEE
T ss_pred             eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEE--ECCCCCEEEEecCCCCEE
Confidence             33444455789999999999876653  5789999983   333333333333333333  488888776665 88999


Q ss_pred             EEEeCCC-cceee----eccC-CCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCC
Q psy6442         148 YKFDYST-GAEIE----SFKG-HFGPIHCVKFSPDGELYA-SGSEDGTLRLWQTNV  196 (231)
Q Consensus       148 ~~~d~~~-~~~~~----~~~~-h~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~~  196 (231)
                      ++||+.+ ++...    .+.. ....+..++|+|++++++ ++..++.|++|++..
T Consensus       154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             EEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            9999976 54322    2222 235788999999999664 555899999999953

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=3.2e-15  Score=123.66  Aligned_cols=198  Identities=12%  Similarity=0.197  Sum_probs=143.8

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe----------CCCCEEEEeCCCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA----------EDKTVRLWDVSAS   72 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s----------~D~ti~iwd~~~~   72 (231)
                      .|++|++||..+++.+.++..+..+  .+.|+|+++.+               ++++          .|++|.+||..+.
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~l---------------yv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKI---------------YTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEE---------------EEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEE---------------EEEEecccccccCCCCCEEEEEECcCC
Confidence            4789999999999999999887776  89999987654               4443          3678999999998


Q ss_pred             CceEEEEeC-------CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEe-eecc--------------------
Q psy6442          73 AEVQKLEFG-------AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKE-HKVP--------------------  121 (231)
Q Consensus        73 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~-~~~~--------------------  121 (231)
                      +.+..+...       ..+..++++|+++.++++.   ++.+.+||..+.+.+.. +..+                    
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence            888888753       4578999999999998763   46899999876655444 1110                    


Q ss_pred             ------------ceeE-------------------------------------EEE------------------------
Q psy6442         122 ------------AQVH-------------------------------------SAS------------------------  128 (231)
Q Consensus       122 ------------~~~~-------------------------------------~~~------------------------  128 (231)
                                  ....                                     .+.                        
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence                        0000                                     000                        


Q ss_pred             -------EEecCCCCEEEEecC-----------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEE
Q psy6442         129 -------LLLNSERPIFVCGGE-----------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLR  190 (231)
Q Consensus       129 -------~~~~~~~~~~~~g~~-----------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~  190 (231)
                             +.+++++..+.....           ..+|++||..+++.+.++..+.  +.+++|+|||++|+++.. ++|.
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~  328 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVN  328 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEE
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEE
Confidence                   112334343333221           3479999999999999988776  999999999999988887 9999


Q ss_pred             EEeCCCC--CeeeeeeccCCcccCCCCCCcccc
Q psy6442         191 LWQTNVG--KTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       191 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      |||..++  +..+.... .+..+.-+.+.++|.
T Consensus       329 v~D~~t~~l~~~~~i~~-~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          329 VYDISQPEPKLLRTIEG-AAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEECSSSSCEEEEEETT-SCSSEEEEEECCCSC
T ss_pred             EEECCCCcceeeEEecc-CCCCcEEEEecCCCC
Confidence            9999999  87766533 355566667776664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=3.4e-15  Score=120.92  Aligned_cols=201  Identities=10%  Similarity=0.098  Sum_probs=128.0

Q ss_pred             CCCceeeecc--CCCe--EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC---CCCceE
Q psy6442           4 DGKPMLRQGD--TGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS---ASAEVQ   76 (231)
Q Consensus         4 d~~~~~~~~~--~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~---~~~~~~   76 (231)
                      ++++++|+.+  +|++  +..+..+. .+..+.|+|+++.+              ++++..+++|.+||+.   ..+...
T Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l--------------~~~~~~~~~i~~~d~~~~~~~~~~~  123 (343)
T 1ri6_A           59 EFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFV--------------FVGSYNAGNVSVTRLEDGLPVGVVD  123 (343)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEE--------------EEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEE--------------EEEecCCCeEEEEECCCCccccccc
Confidence            3788999886  6663  44555444 77888999876542              2344458899999994   333344


Q ss_pred             EEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCC-cceEE----eeeccceeEEEEEEecCCCCEEE-EecCCCeEE
Q psy6442          77 KLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS-LELIK----EHKVPAQVHSASLLLNSERPIFV-CGGEDLKMY  148 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~  148 (231)
                      .+.....+..++|+|+++.++++  .++.+.+||... .....    ....+.......+.++|++..++ ++..++.++
T Consensus       124 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          124 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            44445678899999999977765  468999999876 43322    22222111222344588888654 555789999


Q ss_pred             EEeCCC--cce--eee---cc-CC--CCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCC--CCC--eeeeeeccCCcccCC
Q psy6442         149 KFDYST--GAE--IES---FK-GH--FGPIHCVKFSPDGELYA-SGSEDGTLRLWQTN--VGK--TYGLWKCIEGGLNNS  213 (231)
Q Consensus       149 ~~d~~~--~~~--~~~---~~-~h--~~~V~~v~~spd~~~la-S~s~d~~v~iwd~~--~~~--~~~~~~~~~~~~~~~  213 (231)
                      +|++..  ++.  ...   +. ++  ...+.+++|+|++++|+ ++..++.|++|++.  +++  .......  ......
T Consensus       204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~  281 (343)
T 1ri6_A          204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRG  281 (343)
T ss_dssp             EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCC
T ss_pred             EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccce
Confidence            999853  332  222   22 11  23566899999998665 56689999999998  332  3333332  222556


Q ss_pred             CCCCcccc
Q psy6442         214 LGLDSSGH  221 (231)
Q Consensus       214 ~~~~~~~~  221 (231)
                      ++++++|+
T Consensus       282 ~~~s~dg~  289 (343)
T 1ri6_A          282 FNVDHSGK  289 (343)
T ss_dssp             EEECTTSS
T ss_pred             EEECCCCC
Confidence            67776665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=2.7e-16  Score=137.49  Aligned_cols=188  Identities=11%  Similarity=0.064  Sum_probs=135.7

Q ss_pred             CCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccc---cc-------cc---------------------cC
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAA---DF-------QA---------------------KN   51 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~---d~-------~~---------------------~~   51 (231)
                      ||+++||...+|+..+ +..|. ..|..+.|+|+ +.++++..   +.       ..                     .+
T Consensus        43 ~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~d  120 (582)
T 3o4h_A           43 EGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT  120 (582)
T ss_dssp             TTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEEC
T ss_pred             CCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCC
Confidence            8999999987665554 55555 68999999998 76665443   10       00                     02


Q ss_pred             C-CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcC----CeEEEEECCCcceEEeeeccceeE
Q psy6442          52 N-TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THG----SCVTFLDANSLELIKEHKVPAQVH  125 (231)
Q Consensus        52 ~-~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~----~~i~~~d~~~~~~~~~~~~~~~~~  125 (231)
                      + ..+++.+.++.+.+||+.+++.........  .+++++|||+.++. +.+    ..+.+||..+.+..........+.
T Consensus       121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~  198 (582)
T 3o4h_A          121 GEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFS  198 (582)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEE
T ss_pred             CCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccc
Confidence            3 234444444555699998887655544443  88999999998874 333    578899987766543333333343


Q ss_pred             EEEEEecCCCCEEEEecCCC--eEEEEeCCCcceeeeccCCCCCeeEEE--------EcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         126 SASLLLNSERPIFVCGGEDL--KMYKFDYSTGAEIESFKGHFGPIHCVK--------FSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~--~i~~~d~~~~~~~~~~~~h~~~V~~v~--------~spd~~~laS~s~d~~v~iwd~~  195 (231)
                        ...++|+++.++++..++  +|++||+.+++.. .+.+|...+..++        |+|||.++++++.|++++||++ 
T Consensus       199 --~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-  274 (582)
T 3o4h_A          199 --SASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-  274 (582)
T ss_dssp             --EEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-
T ss_pred             --cceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-
Confidence              344599999999877788  8999999988877 7788888888888        9999999999999999999999 


Q ss_pred             CCCee
Q psy6442         196 VGKTY  200 (231)
Q Consensus       196 ~~~~~  200 (231)
                       |+..
T Consensus       275 -g~~~  278 (582)
T 3o4h_A          275 -GERV  278 (582)
T ss_dssp             -TEEE
T ss_pred             -CCee
Confidence             6544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.67  E-value=3.4e-15  Score=126.51  Aligned_cols=166  Identities=9%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             ccccEEEEEECCCCceeEeccccccccCCCEEE----EEeCCCCEEEEeCCCC--------CceEEEE----eCCcceeE
Q psy6442          24 HKGCVWGVDINKDASKAASGAADFQAKNNTRLI----SCAEDKTVRLWDVSAS--------AEVQKLE----FGAVPNSL   87 (231)
Q Consensus        24 H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~----s~s~D~ti~iwd~~~~--------~~~~~~~----~~~~~~~v   87 (231)
                      |.+.|.+++|+|++++               |+    +++.|++|+|||+.++        +.+..+.    +...+.++
T Consensus        91 ~~~~v~~l~~spdg~~---------------lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  155 (434)
T 2oit_A           91 MKFPIHHLALSCDNLT---------------LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM  155 (434)
T ss_dssp             CSSCEEEEEECTTSCE---------------EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE
T ss_pred             CCCcccEEEEcCCCCE---------------EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE
Confidence            5667999999998654               55    7889999999998654        2223333    35679999


Q ss_pred             EEccC-CCEEE-EEcCCeEEEEECCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC
Q psy6442          88 EISRD-GTTIT-VTHGSCVTFLDANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH  164 (231)
Q Consensus        88 ~~~~~-~~~~~-~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h  164 (231)
                      +|+|+ +..++ ++.++.+++||.++......... ...+.++++  ++++..+++|+.|++|++||.+ ++....+..|
T Consensus       156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w--spdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~  232 (434)
T 2oit_A          156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW--SPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP  232 (434)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE--CTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred             EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE--cCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence            99998 56555 46789999999987754433322 335555554  8899999999999999999997 4544444333


Q ss_pred             -------CCCeeEEEEcCCCCEEEEee-CCC------cEEEEeCCCCCe--eeeeeccC
Q psy6442         165 -------FGPIHCVKFSPDGELYASGS-EDG------TLRLWQTNVGKT--YGLWKCIE  207 (231)
Q Consensus       165 -------~~~V~~v~~spd~~~laS~s-~d~------~v~iwd~~~~~~--~~~~~~~~  207 (231)
                             ...|.+++|++++.++++.+ .||      .+++|++...+.  -..|+.+.
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~  291 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFM  291 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECC
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecc
Confidence                   34899999999988775543 443      389999986542  24555543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=2.5e-14  Score=116.80  Aligned_cols=202  Identities=15%  Similarity=0.170  Sum_probs=128.6

Q ss_pred             CCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCC-CCc--eEE
Q psy6442           4 DGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSA-SAE--VQK   77 (231)
Q Consensus         4 d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~-~~~--~~~   77 (231)
                      ++.|++|+..+|+  .+..+..|...+..++|+|+++.               |++++ .+++|++|++.. +..  +..
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~---------------l~~~~~~~~~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL---------------VYSANYHKGTAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE---------------EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE---------------EEEEeCCCCEEEEEEeCCCCCeeecce
Confidence            6789999987776  45666667778888999998554               56666 679999999963 322  222


Q ss_pred             EEeC----------CcceeEEEccCCCEEEEE-c-CCeEEEEECC-CcceEE--eeeccceeEEEEEEecCCCCEEE-Ee
Q psy6442          78 LEFG----------AVPNSLEISRDGTTITVT-H-GSCVTFLDAN-SLELIK--EHKVPAQVHSASLLLNSERPIFV-CG  141 (231)
Q Consensus        78 ~~~~----------~~~~~v~~~~~~~~~~~~-~-~~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~g  141 (231)
                      +...          ..+..++++|+++ ++++ . ++.+.+|+.. +.....  ....+.......+.++|+++.++ +.
T Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~  205 (347)
T 3hfq_A          127 VQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG  205 (347)
T ss_dssp             EECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             eecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence            2221          1366899999999 5554 3 5689999987 333222  12222111122344589998554 45


Q ss_pred             cCCCeEEEEeCCC--cce--eeeccCCC------CCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCC---CeeeeeeccC
Q psy6442         142 GEDLKMYKFDYST--GAE--IESFKGHF------GPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVG---KTYGLWKCIE  207 (231)
Q Consensus       142 ~~d~~i~~~d~~~--~~~--~~~~~~h~------~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~---~~~~~~~~~~  207 (231)
                      ..++.+++|++..  ++.  +..+....      ..+..++|+|||++| ++...++.|.+|++...   +....... .
T Consensus       206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~  284 (347)
T 3hfq_A          206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-E  284 (347)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-S
T ss_pred             CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-C
Confidence            6778899998763  432  22322222      348889999999966 66677999999998732   22333322 2


Q ss_pred             CcccCCCCCCccccc
Q psy6442         208 GGLNNSLGLDSSGHL  222 (231)
Q Consensus       208 ~~~~~~~~~~~~~~~  222 (231)
                      +..+..++++++|+.
T Consensus       285 ~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          285 GDFPRDFDLDPTEAF  299 (347)
T ss_dssp             SSCCCEEEECTTSSE
T ss_pred             CCCcCeEEECCCCCE
Confidence            334566777777764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=3.6e-15  Score=117.87  Aligned_cols=183  Identities=13%  Similarity=0.056  Sum_probs=129.4

Q ss_pred             cCCCceeeeccC-CCeEeeeeccc-ccEEEEEECCCCceeEecccc----cc-------------------------ccC
Q psy6442           3 VDGKPMLRQGDT-GDWIGTFEGHK-GCVWGVDINKDASKAASGAAD----FQ-------------------------AKN   51 (231)
Q Consensus         3 ~d~~~~~~~~~~-g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d----~~-------------------------~~~   51 (231)
                      .+++|++|+..+ ++....+.+|. ..|.++.|+|+++.++.+..+    ..                         ..+
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spd  139 (297)
T 2ojh_A           60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD  139 (297)
T ss_dssp             ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTT
T ss_pred             cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCC
Confidence            478899999999 88888777774 788999999999988887621    00                         015


Q ss_pred             CCEEE-EEeCCCCEEEEeCC--CCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECC-CcceEEeeec-ccee
Q psy6442          52 NTRLI-SCAEDKTVRLWDVS--ASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN-SLELIKEHKV-PAQV  124 (231)
Q Consensus        52 ~~~l~-s~s~D~ti~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~-~~~~~~~~~~-~~~~  124 (231)
                      ++.|+ +++.|++++||++.  .+...........+..++|+|++..+++.  .++.+.+|+.. .......... ...+
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  219 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD  219 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred             CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence            66666 88899999999853  33332222334578899999999977654  35677777654 2233333322 2233


Q ss_pred             EEEEEEecCCCCEEEEecCC-----------CeEEEEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         125 HSASLLLNSERPIFVCGGED-----------LKMYKFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       125 ~~~~~~~~~~~~~~~~g~~d-----------~~i~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      .  .+.++|++..+++++.+           ..|++||+.+++.  +..+.+|...+.+++|+|++++|++++.+.
T Consensus       220 ~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          220 W--FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E--EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             C--CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            3  34458899988877654           5699999987764  444557888999999999999988887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.65  E-value=8.6e-14  Score=114.33  Aligned_cols=218  Identities=13%  Similarity=0.141  Sum_probs=136.7

Q ss_pred             cCCCceeeec--cCCCeEeeeecccccEEEEEECCCCceeEecccc----ccc---------------------------
Q psy6442           3 VDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD----FQA---------------------------   49 (231)
Q Consensus         3 ~d~~~~~~~~--~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d----~~~---------------------------   49 (231)
                      .++.+++|..  .+|++......|......+.|+|+++.++.++.+    ..+                           
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~  104 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY  104 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred             CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence            4567777765  5676543322266777788999999877766542    100                           


Q ss_pred             --cCCCEEEEEe-CCCCEEEEeCCCCCce----EEEEeC-----------CcceeEEEccCCCEEEEEc--CCeEEEEEC
Q psy6442          50 --KNNTRLISCA-EDKTVRLWDVSASAEV----QKLEFG-----------AVPNSLEISRDGTTITVTH--GSCVTFLDA  109 (231)
Q Consensus        50 --~~~~~l~s~s-~D~ti~iwd~~~~~~~----~~~~~~-----------~~~~~v~~~~~~~~~~~~~--~~~i~~~d~  109 (231)
                        .+++.|++++ .+++|.+|++.....+    ..+.+.           ..+..++++|+++.++++.  ++.+.+|+.
T Consensus       105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  184 (361)
T 3scy_A          105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI  184 (361)
T ss_dssp             EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence              0456666666 5789999998754322    112221           1236799999999776653  578999986


Q ss_pred             CCcce------E------EeeeccceeEEEEEEecCCCCEEEEec-CCCeEEEEeCCCcce--eee---ccCCCCCeeEE
Q psy6442         110 NSLEL------I------KEHKVPAQVHSASLLLNSERPIFVCGG-EDLKMYKFDYSTGAE--IES---FKGHFGPIHCV  171 (231)
Q Consensus       110 ~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~~~d~~~~~~--~~~---~~~h~~~V~~v  171 (231)
                      .....      +      .....+.......+.++|+++.++..+ .++.|++|++.++..  +..   ...+...+..+
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i  264 (361)
T 3scy_A          185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI  264 (361)
T ss_dssp             CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred             cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence            64331      1      122222211222344589998776665 688999999886643  222   33444567899


Q ss_pred             EEcCCCCEEEEeeC--CCcEEEEeCC--CCCe--eeeeeccCCcccCCCCCCccccc
Q psy6442         172 KFSPDGELYASGSE--DGTLRLWQTN--VGKT--YGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       172 ~~spd~~~laS~s~--d~~v~iwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      +|+|||++|+.+..  ++.|+||++.  +++.  ......  +.....++++++|+.
T Consensus       265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~  319 (361)
T 3scy_A          265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKY  319 (361)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCE
T ss_pred             EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCE
Confidence            99999998866554  5899999985  5553  223332  445566778877764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.64  E-value=2e-15  Score=134.61  Aligned_cols=185  Identities=12%  Similarity=0.099  Sum_probs=128.5

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC-----CCceEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-----SAEVQK   77 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~-----~~~~~~   77 (231)
                      .|+++++|+..+|+... +..|.+.+..+.|+|+|+.               |+++ .|++|++||+.+     ++....
T Consensus        99 ~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~---------------la~~-~~~~i~v~~~~~~~~~~g~~~~~  161 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDR---------------VAYV-RNHNLYIARGGKLGEGMSRAIAV  161 (706)
T ss_dssp             ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSE---------------EEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred             ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCE---------------EEEE-ECCeEEEEecCcccccCCCcEEe
Confidence            46889999998887655 5567788889999998655               4553 579999999988     765443


Q ss_pred             EEeCCc---------------ceeEEEccCCCEEEEEc----------------------------------CCeEEEEE
Q psy6442          78 LEFGAV---------------PNSLEISRDGTTITVTH----------------------------------GSCVTFLD  108 (231)
Q Consensus        78 ~~~~~~---------------~~~v~~~~~~~~~~~~~----------------------------------~~~i~~~d  108 (231)
                      ......               +..++|+||++.++...                                  +..+.+||
T Consensus       162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            322222               47899999999877643                                  24788999


Q ss_pred             CCCcceEEeeec-cceeEEEEEEecCCCCEEEEecCCC-----eEEEEeCCCcceeeecc--CCC---CCeeEEEEcC--
Q psy6442         109 ANSLELIKEHKV-PAQVHSASLLLNSERPIFVCGGEDL-----KMYKFDYSTGAEIESFK--GHF---GPIHCVKFSP--  175 (231)
Q Consensus       109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~~~d~~~~~~~~~~~--~h~---~~V~~v~~sp--  175 (231)
                      ..+.+....... ........+.++|+++.+++++.+.     .|++||..+++....+.  .+.   ..+.+++|+|  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~  321 (706)
T 2z3z_A          242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS  321 (706)
T ss_dssp             TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred             CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence            887665443321 1112223344589999888876654     89999998883333322  122   2357889999  


Q ss_pred             CCCEEEEeeCCCcEEEEeCC-CCCeeeeee
Q psy6442         176 DGELYASGSEDGTLRLWQTN-VGKTYGLWK  204 (231)
Q Consensus       176 d~~~laS~s~d~~v~iwd~~-~~~~~~~~~  204 (231)
                      ||+++++++.|+.++||.+. +++....++
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             CCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            99999999999999999876 555444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=8e-15  Score=131.34  Aligned_cols=178  Identities=11%  Similarity=0.044  Sum_probs=126.6

Q ss_pred             cccEEEEEECCCCceeEeccccccccCCCEEEEEeC-CC-----CEEEEeCCCCCceEEEEeC-----------------
Q psy6442          25 KGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE-DK-----TVRLWDVSASAEVQKLEFG-----------------   81 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~-----ti~iwd~~~~~~~~~~~~~-----------------   81 (231)
                      ...|.++.|+|||+               +|++++. |+     +|++||+.+++....+...                 
T Consensus        36 ~~~~~~~~~SpdG~---------------~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS---------------RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR  100 (741)
T ss_dssp             CCCCEEEEECTTSS---------------EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred             CCCCCCceEecCCC---------------EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence            34689999999855               4677777 87     8999999998876665432                 


Q ss_pred             --------CcceeEEEccCCCEEEEEcCCeEEEEECCCc---ceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEE
Q psy6442          82 --------AVPNSLEISRDGTTITVTHGSCVTFLDANSL---ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKF  150 (231)
Q Consensus        82 --------~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~  150 (231)
                              ..+..++|+||++.++....+.+.+||..+.   ...........+...  .++|+++.+++++ +..|++|
T Consensus       101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~--~~SPDG~~la~~~-~~~i~~~  177 (741)
T 2ecf_A          101 ERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDA--KLSPKGGFVSFIR-GRNLWVI  177 (741)
T ss_dssp             ------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEE--EECTTSSEEEEEE-TTEEEEE
T ss_pred             hhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccc--cCCCCCCEEEEEe-CCcEEEE
Confidence                    1267899999999888777799999998876   433322222334443  4589999988877 4589999


Q ss_pred             eCCCcceeeeccCCCCC----------------eeEEEEcCCCCEEEEeeCCC---------------------------
Q psy6442         151 DYSTGAEIESFKGHFGP----------------IHCVKFSPDGELYASGSEDG---------------------------  187 (231)
Q Consensus       151 d~~~~~~~~~~~~h~~~----------------V~~v~~spd~~~laS~s~d~---------------------------  187 (231)
                      |+.+++.......+...                +.+++|||||++|++++.|+                           
T Consensus       178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence            99887766554444432                47899999999999998766                           


Q ss_pred             ------cEEEEeCCC-CCeeeeeec-cCCcccCCCCCCcccc
Q psy6442         188 ------TLRLWQTNV-GKTYGLWKC-IEGGLNNSLGLDSSGH  221 (231)
Q Consensus       188 ------~v~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~  221 (231)
                            .|.+||+.+ ++...+-.. -.......++| ++|+
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~  298 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ  298 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC
Confidence                  789999988 775433211 12233444556 6555

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.63  E-value=4.8e-15  Score=137.96  Aligned_cols=196  Identities=13%  Similarity=0.062  Sum_probs=137.1

Q ss_pred             CCCceeeeccCCCeEeeeec-----------ccccEEEEEEC-CCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           4 DGKPMLRQGDTGDWIGTFEG-----------HKGCVWGVDIN-KDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~g-----------H~~~V~~~~~~-~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      ++++++|+...+ .+..+.+           |.+.|.++.|+ |+|+.               |++++ ++++.+|+...
T Consensus       264 ~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~---------------la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          264 GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL---------------IAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC---------------EEEEE-TTEEEEECTTS
T ss_pred             CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCE---------------EEEEE-cCEEEEEcCCC
Confidence            567888887433 3445655           45578899999 98654               45555 78999999987


Q ss_pred             CCceEEEEeCC-cceeEEEccCCCEEEE-EcCCeEE-EEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          72 SAEVQKLEFGA-VPNSLEISRDGTTITV-THGSCVT-FLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        72 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      +.......... .+..++|+ ++..++. +.+..+. +|+...............+..  +.++|+++.+++++.++.|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~--~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFA--MGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEE--EEECTTSSEEEEEETTSEEE
T ss_pred             CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceee--eEECCCCCEEEEECCCCeEE
Confidence            76443222334 67788999 8876655 4455677 788776554333322223333  44599999999999999999


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC----------cEEEEeCCCCCeeeeeeccCCcccCCCCCCc
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG----------TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDS  218 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (231)
                      +||+.+++....+.+|...+.+++|||||++|++++.++          .|++||+.+++...+ .... .....++|.+
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l-~~~~-~~~~~~~~sp  481 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTEN-SHDYAPAFDA  481 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSS-SBEEEEEECT
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-eCCC-cccCCceEcC
Confidence            999999888777778999999999999999999887654          899999998874332 2211 1122345556


Q ss_pred             ccc
Q psy6442         219 SGH  221 (231)
Q Consensus       219 ~~~  221 (231)
                      +|+
T Consensus       482 dG~  484 (1045)
T 1k32_A          482 DSK  484 (1045)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            555

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.62  E-value=6.2e-14  Score=130.51  Aligned_cols=211  Identities=11%  Similarity=0.124  Sum_probs=146.8

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc---------------------------ccCCCEEEE
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ---------------------------AKNNTRLIS   57 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~---------------------------~~~~~~l~s   57 (231)
                      .+.++|....+.....+.+|.+.+.++.|+++ ..++++..+..                           ..+++.|+.
T Consensus       183 ~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~  261 (1045)
T 1k32_A          183 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILF  261 (1045)
T ss_dssp             TCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEE
T ss_pred             CcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEE
Confidence            34566654444555667899999999999987 44444332210                           015566777


Q ss_pred             EeCCCCEEEEeCCCCCceEEEEe------------CCcceeEEEc-cCCCEEEEEcCCeEEEEECCCcceEEeeeccc-e
Q psy6442          58 CAEDKTVRLWDVSASAEVQKLEF------------GAVPNSLEIS-RDGTTITVTHGSCVTFLDANSLELIKEHKVPA-Q  123 (231)
Q Consensus        58 ~s~D~ti~iwd~~~~~~~~~~~~------------~~~~~~v~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~  123 (231)
                      + .|+.|.+||+.... +..+..            ...+..++|+ |+++.++....+.+.+|+............+. .
T Consensus       262 ~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~  339 (1045)
T 1k32_A          262 S-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIR  339 (1045)
T ss_dssp             E-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEE
T ss_pred             E-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcce
Confidence            6 48899999984433 332221            1258899999 99998777668889999987665443222222 3


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEE-EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMY-KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~-~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +..  ..++ ++..++.++.+..++ +|+...++.. .+.+|...+..++|||||++|++++.++.|++||+.+++...+
T Consensus       340 ~~~--~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          340 YVR--RGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             EEE--ECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEe--eeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence            333  3346 888888888888899 9998776544 4447888999999999999999999999999999999988776


Q ss_pred             eeccCCcccCCCCCCcccccc
Q psy6442         203 WKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      .+... .....++|+++|+.+
T Consensus       416 ~~~~~-~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          416 ERSRE-AMITDFTISDNSRFI  435 (1045)
T ss_dssp             EECSS-SCCCCEEECTTSCEE
T ss_pred             ccCCC-CCccceEECCCCCeE
Confidence            65422 233456677777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.60  E-value=6.7e-13  Score=108.31  Aligned_cols=184  Identities=17%  Similarity=0.176  Sum_probs=121.1

Q ss_pred             cCCCceeeecc-CCCe--Eeeeec---------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC
Q psy6442           3 VDGKPMLRQGD-TGDW--IGTFEG---------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS   70 (231)
Q Consensus         3 ~d~~~~~~~~~-~g~~--i~~l~g---------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~   70 (231)
                      .++++++|+.. +|+.  +..+..         +...+.++.|+|+++               .+++...+++|++||+.
T Consensus       106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---------------l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---------------LAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---------------EEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---------------EEEEeCCCCEEEEEEEC
Confidence            46788899874 3432  333321         112478889998864               35666678899999998


Q ss_pred             -CCCceEE--EEe--CCcceeEEEccCCCEEEEE--cCCeEEEEECCC--cce--EEeeec-cce----eEEEEEEecCC
Q psy6442          71 -ASAEVQK--LEF--GAVPNSLEISRDGTTITVT--HGSCVTFLDANS--LEL--IKEHKV-PAQ----VHSASLLLNSE  134 (231)
Q Consensus        71 -~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~--~~~--~~~~~~-~~~----~~~~~~~~~~~  134 (231)
                       +++....  +..  ...+..++|+|+++.+++.  .++.+.+|+...  ...  ...... +..    .....+.++|+
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence             4443222  222  2367889999999977664  356888888653  322  122211 110    12333455899


Q ss_pred             CCEE-EEecCCCeEEEEeCCC-c--ceeeeccCCCCCeeEEEEcCCCCEEEEeeC-CCcEEEE--eCCCCCeee
Q psy6442         135 RPIF-VCGGEDLKMYKFDYST-G--AEIESFKGHFGPIHCVKFSPDGELYASGSE-DGTLRLW--QTNVGKTYG  201 (231)
Q Consensus       135 ~~~~-~~g~~d~~i~~~d~~~-~--~~~~~~~~h~~~V~~v~~spd~~~laS~s~-d~~v~iw--d~~~~~~~~  201 (231)
                      ++.+ ++...++.|.+|++.. +  +.+..+..+...+..++|+|||++|++++. ++.|.+|  |..+|+...
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            9866 5556689999999863 2  445666667777899999999998877765 5899999  667787654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.59  E-value=1.6e-14  Score=130.01  Aligned_cols=189  Identities=6%  Similarity=-0.012  Sum_probs=126.1

Q ss_pred             CCCceeeeccCCCeEeeeecccccE-----EEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCV-----WGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V-----~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ||+|++|+..+|+....+.+|....     ..+.|+|||+.++.+..+..+.-.      +..+.+.+||+.+++.....
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~------~~~~~~~~~d~~~~~~~~l~  108 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH------SYTASYDIYDLNKRQLITEE  108 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS------CEEEEEEEEETTTTEECCSS
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE------ccceEEEEEECCCCcEEEcc
Confidence            7899999999999988888887543     336789987765433321111000      01145779999998765433


Q ss_pred             EeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccce--eE---------------EEEEEecCCCCEEEEe
Q psy6442          79 EFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ--VH---------------SASLLLNSERPIFVCG  141 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~g  141 (231)
                      .....+...+|+|||+.++...++.|.+|+..+....+.......  +.               ...+.++|+++.++..
T Consensus       109 ~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            334567899999999988777788999999877654432211110  10               0113458999988876


Q ss_pred             cCC------------------------------------CeEEEEeCCC---cc--eeeecc------CCCCCeeEEEEc
Q psy6442         142 GED------------------------------------LKMYKFDYST---GA--EIESFK------GHFGPIHCVKFS  174 (231)
Q Consensus       142 ~~d------------------------------------~~i~~~d~~~---~~--~~~~~~------~h~~~V~~v~~s  174 (231)
                      ..|                                    .+|++||+.+   ++  ....+.      +|...+..++||
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            321                                    2588899987   62  122232      477789999999


Q ss_pred             CCCCEEEEee----CCCcEEEEeCCCCC
Q psy6442         175 PDGELYASGS----EDGTLRLWQTNVGK  198 (231)
Q Consensus       175 pd~~~laS~s----~d~~v~iwd~~~~~  198 (231)
                      |||++++...    .+..|++||+.+|+
T Consensus       269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          269 TQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            9999666553    23479999999887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.59  E-value=1.5e-13  Score=112.84  Aligned_cols=184  Identities=12%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             cCCCceeeeccCCCeEeeee---c-----------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEe
Q psy6442           3 VDGKPMLRQGDTGDWIGTFE---G-----------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWD   68 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~---g-----------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd   68 (231)
                      .++++.+|+......+..+.   .           +...+.++.|+|+|+.+              +++...+++|++|+
T Consensus       118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l--------------~~~~~~~~~v~v~~  183 (361)
T 3scy_A          118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL--------------LADDLGTDQIHKFN  183 (361)
T ss_dssp             TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE--------------EEEETTTTEEEEEE
T ss_pred             CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE--------------EEEeCCCCEEEEEE
Confidence            46788888876443332221   1           12235788999886543              34455588999998


Q ss_pred             CCCCCc------e------EEEE--eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce--EEeeec-cc-eeEEEE
Q psy6442          69 VSASAE------V------QKLE--FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL--IKEHKV-PA-QVHSAS  128 (231)
Q Consensus        69 ~~~~~~------~------~~~~--~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~--~~~~~~-~~-~~~~~~  128 (231)
                      +.....      +      ....  ....+..++|+|+++.+++..  ++.+.+|+..+...  +..... +. ......
T Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~  263 (361)
T 3scy_A          184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD  263 (361)
T ss_dssp             ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred             EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence            875442      2      1222  245678999999999877654  67899999875433  222211 11 011123


Q ss_pred             EEecCCCCEEEEecC--CCeEEEEeCC--Ccc--eeeeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEE--eCCCCCe
Q psy6442         129 LLLNSERPIFVCGGE--DLKMYKFDYS--TGA--EIESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLW--QTNVGKT  199 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~--d~~i~~~d~~--~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iw--d~~~~~~  199 (231)
                      +.++|+++.++.++.  +..|.+|++.  ++.  .+..+.. ...+.+++|+|||++|++++ .++.|.+|  |..+|+.
T Consensus       264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            445899998766554  4789999885  344  3444444 45788999999999887776 67999995  5567765


Q ss_pred             ee
Q psy6442         200 YG  201 (231)
Q Consensus       200 ~~  201 (231)
                      ..
T Consensus       343 ~~  344 (361)
T 3scy_A          343 TD  344 (361)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.58  E-value=5.6e-15  Score=131.89  Aligned_cols=178  Identities=13%  Similarity=0.012  Sum_probs=123.6

Q ss_pred             cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC----cceeEEEccCCCEEEEEcC-
Q psy6442          27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA----VPNSLEISRDGTTITVTHG-  101 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~-  101 (231)
                      .+.++.|+|+|++               +++ +.|++|++||+.+++....+....    .+.+++|+||++.++.... 
T Consensus        18 ~~~~~~~spdg~~---------------~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~   81 (723)
T 1xfd_A           18 HDPEAKWISDTEF---------------IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV   81 (723)
T ss_dssp             CCCCCCBSSSSCB---------------CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred             cccccEEcCCCcE---------------EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecC
Confidence            4667889998653               444 678999999999988776665433    3889999999998766532 


Q ss_pred             ---------CeEEEEECCCcceEEeeeccc---eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCe-
Q psy6442         102 ---------SCVTFLDANSLELIKEHKVPA---QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI-  168 (231)
Q Consensus       102 ---------~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V-  168 (231)
                               +.+.+||..+.+.........   .+..  ..++|+++.+++++. ..|++||..+++.......+...+ 
T Consensus        82 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~--~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~  158 (723)
T 1xfd_A           82 EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY--AGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI  158 (723)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB--CCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             ccceeecceeeEEEEECCCCceEeccCCccccccccc--cEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence                     678899988776522211111   1222  334899999988875 799999998887666555444333 


Q ss_pred             -----------------eEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCC
Q psy6442         169 -----------------HCVKFSPDGELYASGSEDG----------------------------------TLRLWQTNVG  197 (231)
Q Consensus       169 -----------------~~v~~spd~~~laS~s~d~----------------------------------~v~iwd~~~~  197 (231)
                                       .+++|||||++|++++.|+                                  .|++||+.++
T Consensus       159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~  238 (723)
T 1xfd_A          159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (723)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence                             7899999999999988653                                  7999999888


Q ss_pred             CeeeeeeccC-----CcccCCCCCCcccccc
Q psy6442         198 KTYGLWKCIE-----GGLNNSLGLDSSGHLN  223 (231)
Q Consensus       198 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~  223 (231)
                      +....++...     ......++|.++|+.+
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l  269 (723)
T 1xfd_A          239 THDLEMMPPDDPRMREYYITMVKWATSTKVA  269 (723)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred             ceeEEeeCCccCCCccceeEEEEEeCCCeEE
Confidence            7433333211     2333456777777643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.54  E-value=2.6e-13  Score=118.60  Aligned_cols=175  Identities=13%  Similarity=0.078  Sum_probs=118.2

Q ss_pred             cccEEEEEECCCCceeEeccc-cccc--------------------------cCCCEEEEEeC---CCCEEEEeCCC--C
Q psy6442          25 KGCVWGVDINKDASKAASGAA-DFQA--------------------------KNNTRLISCAE---DKTVRLWDVSA--S   72 (231)
Q Consensus        25 ~~~V~~~~~~~~~~~~~s~~~-d~~~--------------------------~~~~~l~s~s~---D~ti~iwd~~~--~   72 (231)
                      ..+|+++.|+|||+.+++++. +...                          ..++.+++++.   +...+||.+..  .
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            557888888888887776543 2110                          12355666665   55667765533  2


Q ss_pred             CceEEEEeCCcceeEEEccCCCE-EEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC----Ce
Q psy6442          73 AEVQKLEFGAVPNSLEISRDGTT-ITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED----LK  146 (231)
Q Consensus        73 ~~~~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~~  146 (231)
                      .....+.........+++|++.. +++ ...+.+.+||..+.+.......+.    ..+.++|+++.+++++.+    ..
T Consensus       101 g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          101 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeE
Confidence            22223222334456688888864 333 344556699987766544443333    234458899999987766    78


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCeeeeeec
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG--TLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~--~v~iwd~~~~~~~~~~~~  205 (231)
                      |++||+.+++. ..+..|...+.+++|||||++|+++..++  .|++||+.+++.. +.+.
T Consensus       177 i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          177 LFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             EEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             EEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence            99999987764 46678889999999999999999888898  8999999998876 5544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=1.7e-12  Score=105.77  Aligned_cols=200  Identities=10%  Similarity=0.052  Sum_probs=143.9

Q ss_pred             CcCCCceeeeccCCCeEeeeec------ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEG------HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~g------H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      ..+++|.++|..+++....+..      .......+.+..                +..+++...+++|.+||..+++.+
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~----------------~~lyv~~~~~~~v~viD~~t~~~~   77 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD----------------GIGWIVVNNSHVIFAIDINTFKEV   77 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET----------------TEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC----------------CEEEEEEcCCCEEEEEECcccEEE
Confidence            4588999999999988776421      112345555422                334566666899999999999998


Q ss_pred             EEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc------eeEEEEEEecCCCCEEEEec-CCCe
Q psy6442          76 QKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA------QVHSASLLLNSERPIFVCGG-EDLK  146 (231)
Q Consensus        76 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~-~d~~  146 (231)
                      .++.....+..+++++++ .++++.  ++.+.++|..+.+....+....      ....+.+   .++.++++.. .+.+
T Consensus        78 ~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~  153 (328)
T 3dsm_A           78 GRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNR  153 (328)
T ss_dssp             EEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCE
T ss_pred             EEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCE
Confidence            888766788999999998 555554  7899999999888776665443      3333333   2444455543 4789


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC----------CcEEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED----------GTLRLWQTNVGKTYGLWKCIEGGLNNSLGL  216 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (231)
                      |.++|..+++.+.++... .....++++|+|++++++..+          +.|.++|..+++....+..-.+..++.+++
T Consensus       154 v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          154 ILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             EEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred             EEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence            999999998877776532 345789999999988888765          789999999998877776433446777788


Q ss_pred             Cccccc
Q psy6442         217 DSSGHL  222 (231)
Q Consensus       217 ~~~~~~  222 (231)
                      +++++.
T Consensus       233 ~~d~~~  238 (328)
T 3dsm_A          233 NGTRDT  238 (328)
T ss_dssp             CTTSCE
T ss_pred             ecCCCE
Confidence            876653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=2.6e-12  Score=104.62  Aligned_cols=201  Identities=12%  Similarity=0.133  Sum_probs=138.6

Q ss_pred             CCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCC-ceEEEEe-
Q psy6442           4 DGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASA-EVQKLEF-   80 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~-~~~~~~~-   80 (231)
                      +++|++|+..+|+.+..+. ++-.....++++++|+               .+++...+++|++||..... .+..+.. 
T Consensus        68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~---------------l~v~d~~~~~v~~~~~~g~~~~~~~~~~~  132 (329)
T 3fvz_A           68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN---------------YWVTDVALHQVFKLDPHSKEGPLLILGRS  132 (329)
T ss_dssp             SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC---------------EEEEETTTTEEEEECTTCSSCCSEEESBT
T ss_pred             CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC---------------EEEEECCCCEEEEEeCCCCeEEEEEeccc
Confidence            4679999998999887765 4556788899988754               46777778999999986542 4444421 


Q ss_pred             ---------CCcceeEEEcc-CCCEEEEE--cCCeEEEEECCCcceEEeeecc--------ce-eEEEEEEecCC-CCEE
Q psy6442          81 ---------GAVPNSLEISR-DGTTITVT--HGSCVTFLDANSLELIKEHKVP--------AQ-VHSASLLLNSE-RPIF  138 (231)
Q Consensus        81 ---------~~~~~~v~~~~-~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~--------~~-~~~~~~~~~~~-~~~~  138 (231)
                               -..+..++++| ++..+++.  .++.|..|+. +...+..+...        .. .....+.++++ +.++
T Consensus       133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~  211 (329)
T 3fvz_A          133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC  211 (329)
T ss_dssp             TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred             CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence                     12588999999 67666555  2578999994 44444443211        00 01223344777 7778


Q ss_pred             EEecCCCeEEEEeCCCcceeeec--cCCCCCeeEEEEcC------CCCEEEEeeCCCcEEEEeCCCCCeeeeeec--cCC
Q psy6442         139 VCGGEDLKMYKFDYSTGAEIESF--KGHFGPIHCVKFSP------DGELYASGSEDGTLRLWQTNVGKTYGLWKC--IEG  208 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~~~~~~~~--~~h~~~V~~v~~sp------d~~~laS~s~d~~v~iwd~~~~~~~~~~~~--~~~  208 (231)
                      ++...+.+|++|+..+++.+..+  ..+...+.+++|+|      +++.+++.+.+..|++|+..+++....+..  ..-
T Consensus       212 v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~  291 (329)
T 3fvz_A          212 VADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF  291 (329)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc
Confidence            88888999999999888888776  35667889999999      444444445566999999999998877742  122


Q ss_pred             cccCCCCCCccc
Q psy6442         209 GLNNSLGLDSSG  220 (231)
Q Consensus       209 ~~~~~~~~~~~~  220 (231)
                      ..+..|+++++|
T Consensus       292 ~~p~~ia~~~dG  303 (329)
T 3fvz_A          292 DMPHDIVASEDG  303 (329)
T ss_dssp             SSEEEEEECTTS
T ss_pred             CCeeEEEECCCC
Confidence            345667777776

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.53  E-value=2e-12  Score=106.62  Aligned_cols=180  Identities=12%  Similarity=0.110  Sum_probs=120.9

Q ss_pred             cCCCceeeecc-CCCeEeeee----cccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCC-CCCce
Q psy6442           3 VDGKPMLRQGD-TGDWIGTFE----GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVS-ASAEV   75 (231)
Q Consensus         3 ~d~~~~~~~~~-~g~~i~~l~----gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~-~~~~~   75 (231)
                      .+|++++|+.. +|++...+.    .+...+.++.|+|+|+.               |++++ .+++|++||+. +++..
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~---------------l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY---------------LYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE---------------EEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE---------------EEEEcCCCCEEEEEEECCCCCEE
Confidence            57889999986 577765554    25567899999998654               44444 46789999998 66543


Q ss_pred             --EEEEe---CCcceeEEEccCCCEEEEEc--CCeEEEEECC--CcceE---Eeee-ccce----e-------EEEEEE-
Q psy6442          76 --QKLEF---GAVPNSLEISRDGTTITVTH--GSCVTFLDAN--SLELI---KEHK-VPAQ----V-------HSASLL-  130 (231)
Q Consensus        76 --~~~~~---~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~--~~~~~---~~~~-~~~~----~-------~~~~~~-  130 (231)
                        ..+..   ...+..++|+|+++.+++..  ++.+.+|+..  +.+..   .... .+..    .       ....+. 
T Consensus       182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence              22332   34688999999999887654  4688888754  33322   1111 1110    1       233444 


Q ss_pred             ecCCCCEEEEecCC-C-----eEEEEeCC-Ccceee---eccCCCCCeeEEEEcC---CCCEEEEeeC-CCcEEEEeCCC
Q psy6442         131 LNSERPIFVCGGED-L-----KMYKFDYS-TGAEIE---SFKGHFGPIHCVKFSP---DGELYASGSE-DGTLRLWQTNV  196 (231)
Q Consensus       131 ~~~~~~~~~~g~~d-~-----~i~~~d~~-~~~~~~---~~~~h~~~V~~v~~sp---d~~~laS~s~-d~~v~iwd~~~  196 (231)
                      ++|+++.+++++.+ .     +|.+|++. +++...   ....+...+..++|+|   ||++|++++. +++|+||++..
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            58999887765432 2     89999985 555433   2334555678899999   8999998876 48999999866


Q ss_pred             C
Q psy6442         197 G  197 (231)
Q Consensus       197 ~  197 (231)
                      .
T Consensus       342 ~  342 (365)
T 1jof_A          342 E  342 (365)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=9.3e-12  Score=99.16  Aligned_cols=181  Identities=13%  Similarity=0.055  Sum_probs=138.9

Q ss_pred             CCcCCCceeeeccCCCeEeeeeccc-ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~-~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      ++.|+.|++|+.++|+.+-++..|. ..+.++.+.|+|+.               |+  +.++.|..||. +++.+..+.
T Consensus        11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i---------------lv--s~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A           11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI---------------LF--SYSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE---------------EE--ECBSEEEEECT-TSCEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE---------------EE--eCCCCEEEECC-CCCEEEEEc
Confidence            3678999999998999999998876 46788888887654               44  34677999998 788887777


Q ss_pred             eC--CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc-------eeEEEEEEecCCCCEEEEecCCCeEE
Q psy6442          80 FG--AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA-------QVHSASLLLNSERPIFVCGGEDLKMY  148 (231)
Q Consensus        80 ~~--~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~d~~i~  148 (231)
                      .+  ..+.++.+.++++.+++..  ...+..++. +.+.+..+....       .....  ...+++.++++...+++|.
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v--~~~~~G~~lv~~~~~~~v~  149 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQI--NKNKKGNYLVPLFATSEVR  149 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCC--EECTTSCEEEEETTTTEEE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCc--eECCCCCEEEEecCCCEEE
Confidence            64  3577889999999887754  456666775 555555544221       11112  2367888999999999999


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .||.. |+.+.++..+ ..+.++.+.|+|+++++++.++.|..+|..+|+....+.
T Consensus       150 ~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          150 EIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            99987 9999888754 456778899999999999999899999999999765554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.48  E-value=1e-11  Score=101.20  Aligned_cols=194  Identities=10%  Similarity=0.014  Sum_probs=136.9

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .+++|.++|..+++.+.++.. ......+.++++++               .+++...+++|.+||..+++....+....
T Consensus        62 ~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~---------------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK---------------AYVTQIWDYRIFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             GGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE---------------EEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe---------------EEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence            357899999999999998864 35567788876542               23444478999999999998888888776


Q ss_pred             ------cceeEEEccCCCEEEEE---cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC---------
Q psy6442          83 ------VPNSLEISRDGTTITVT---HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED---------  144 (231)
Q Consensus        83 ------~~~~v~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---------  144 (231)
                            .+..+++ . +..++++   .++.+.++|..+.+.+..+........+.  .+++++++++...+         
T Consensus       126 ~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~--~~~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          126 MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLV--MDKYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCE--ECTTSEEEEEBCCBCTTCSSCBC
T ss_pred             ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceE--EcCCCCEEEEECCCccCCccccC
Confidence                  7888888 3 4455554   36789999999888777766543333333  37888877776554         


Q ss_pred             -CeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee-eeccCCcccCCCCCCc
Q psy6442         145 -LKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL-WKCIEGGLNNSLGLDS  218 (231)
Q Consensus       145 -~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~  218 (231)
                       ..|+++|..+++....+.-. ...+..++|+|++++|..+..  .|.+||..+++.... +-......+..+++++
T Consensus       202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence             78999999888877665422 236889999999887766654  899999988875321 1111134455566665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.48  E-value=4.5e-12  Score=104.65  Aligned_cols=199  Identities=18%  Similarity=0.113  Sum_probs=133.5

Q ss_pred             eeeeccCCCeEeeeecccccEEE-----EEECCCCceeEeccccccccCCCEEEEEeC-CCC--EEEEeCCCCCceEEEE
Q psy6442           8 MLRQGDTGDWIGTFEGHKGCVWG-----VDINKDASKAASGAADFQAKNNTRLISCAE-DKT--VRLWDVSASAEVQKLE   79 (231)
Q Consensus         8 ~~~~~~~g~~i~~l~gH~~~V~~-----~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~-D~t--i~iwd~~~~~~~~~~~   79 (231)
                      ...+..+|..+..|..|.+.+..     ..|+|||+.               |+.++. |++  |.+||+.+++......
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~---------------l~~~~~~~g~~~l~~~d~~~g~~~~lt~   77 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK---------------LLFGGAFDGPWNYYLLDLNTQVATQLTE   77 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE---------------EEEEECTTSSCEEEEEETTTCEEEECCC
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCE---------------EEEEEcCCCCceEEEEeCCCCceEEeee
Confidence            34566789999999999887776     789998655               455555 664  7888998877654443


Q ss_pred             eCC-cceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccce-eEEEEEEecCCCCEEEE----------------
Q psy6442          80 FGA-VPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQ-VHSASLLLNSERPIFVC----------------  140 (231)
Q Consensus        80 ~~~-~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------  140 (231)
                      ... .+..++|+||++.++.. .+..+.+||..+.+.......+.. .....+..++++..++.                
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            332 33467899999977654 466899999988776655544432 22233444788887763                


Q ss_pred             ------ecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCCeeeeeeccC
Q psy6442         141 ------GGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGSED------GTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       141 ------g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s~d------~~v~iwd~~~~~~~~~~~~~~  207 (231)
                            ...+..|++||+.+++. ..+..+...+..++||| ||+.|+.++.+      ..|.++|...++...+.....
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE  236 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred             hhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence                  22447899999988764 34445667899999999 99988877753      378888887766554433221


Q ss_pred             CcccCCCCCCccccc
Q psy6442         208 GGLNNSLGLDSSGHL  222 (231)
Q Consensus       208 ~~~~~~~~~~~~~~~  222 (231)
                      +.......|.++|+.
T Consensus       237 ~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          237 GESCTHEFWVPDGSA  251 (388)
T ss_dssp             TEEEEEEEECTTSSC
T ss_pred             CcccccceECCCCCE
Confidence            122334456666653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.48  E-value=5.4e-12  Score=104.10  Aligned_cols=200  Identities=11%  Similarity=0.103  Sum_probs=124.3

Q ss_pred             Cceeee--ccCCCeEe--eee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC-CCCceEEEE
Q psy6442           6 KPMLRQ--GDTGDWIG--TFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS-ASAEVQKLE   79 (231)
Q Consensus         6 ~~~~~~--~~~g~~i~--~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~-~~~~~~~~~   79 (231)
                      .+.++.  ..+|++..  ... ++...+..++|+|++               ++|++++.+ +|.+||+. +++......
T Consensus        15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg---------------~~l~~~~~~-~v~~~~~~~~g~~~~~~~   78 (365)
T 1jof_A           15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER---------------KNIYGAAMK-KWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS---------------SEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred             cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC---------------CEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence            455544  35665422  111 233456678888874               457777777 99999987 666544333


Q ss_pred             e--CCcceeEEEccCCCE--EEEE--------------cCCeEEEEECCC-cceEEeee-----ccceeEEEEEEecCCC
Q psy6442          80 F--GAVPNSLEISRDGTT--ITVT--------------HGSCVTFLDANS-LELIKEHK-----VPAQVHSASLLLNSER  135 (231)
Q Consensus        80 ~--~~~~~~v~~~~~~~~--~~~~--------------~~~~i~~~d~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~  135 (231)
                      .  ...+..++++|+++.  +++.              .++.+.+|+... .+......     .......  +.++|++
T Consensus        79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~spdG  156 (365)
T 1jof_A           79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG--MVFDPTE  156 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE--EEECTTS
T ss_pred             eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE--EEECCCC
Confidence            2  234677899999985  3333              467899999863 44333222     1123333  4458999


Q ss_pred             CEEEEec-CCCeEEEEeCC-Cccee--eecc--CCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCC--CCCee---eee
Q psy6442         136 PIFVCGG-EDLKMYKFDYS-TGAEI--ESFK--GHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTN--VGKTY---GLW  203 (231)
Q Consensus       136 ~~~~~g~-~d~~i~~~d~~-~~~~~--~~~~--~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~--~~~~~---~~~  203 (231)
                      +.+++++ .+.+|++|++. +++..  ..+.  .|...+..++|+|||++|+.++ .+++|.+|++.  +|+..   +..
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            8777654 46789999997 66542  3333  2456789999999999887776 47899999764  56542   223


Q ss_pred             eccCCc------------ccCCCC-CCcccccc
Q psy6442         204 KCIEGG------------LNNSLG-LDSSGHLN  223 (231)
Q Consensus       204 ~~~~~~------------~~~~~~-~~~~~~~~  223 (231)
                      ......            ....++ ++++|+.+
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            322211            355677 77777644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=3.1e-12  Score=113.18  Aligned_cols=184  Identities=11%  Similarity=0.044  Sum_probs=117.2

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEE---------EEEEC--CCCce-eEeccccccccCCCEEEEEeCCCCEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVW---------GVDIN--KDASK-AASGAADFQAKNNTRLISCAEDKTVRLWDV   69 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~---------~~~~~--~~~~~-~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~   69 (231)
                      +.+++..||....+.....+..|...|.         .+.|+  |||+. ++              ++...+..|.++++
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la--------------~~~~~~~~l~~~~~  109 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV--------------FTHFGDQRLYAFEP  109 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE--------------EEBTTTCCEEEECT
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE--------------EEECCCCeEEEEcC
Confidence            3467778888544555666777766655         45454  77654 32              22222556777776


Q ss_pred             C--C-CCceEEEEe------CCcceeEEEccCCCEEEEEc-C----------CeEEEEECCC------cceEEee-eccc
Q psy6442          70 S--A-SAEVQKLEF------GAVPNSLEISRDGTTITVTH-G----------SCVTFLDANS------LELIKEH-KVPA  122 (231)
Q Consensus        70 ~--~-~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~-~----------~~i~~~d~~~------~~~~~~~-~~~~  122 (231)
                      .  . +.. ..+..      ...+..++|+||++.++... +          ..|.+|+...      ....... ....
T Consensus       110 ~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~  188 (662)
T 3azo_A          110 DAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHR  188 (662)
T ss_dssp             TSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSS
T ss_pred             CCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCC
Confidence            5  2 332 23322      23567899999999876543 3          4788899877      4443332 2222


Q ss_pred             eeEEEEEEecCCCCEEEEecCC--------CeEEEEeCC-Cc---ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC--c
Q psy6442         123 QVHSASLLLNSERPIFVCGGED--------LKMYKFDYS-TG---AEIESFKGHFGPIHCVKFSPDGELYASGSEDG--T  188 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d--------~~i~~~d~~-~~---~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~--~  188 (231)
                      .+.  ...++|+++.++..+.+        ..|++||+. ++   +......+|...+..++|+|||++++++..++  .
T Consensus       189 ~~~--~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~  266 (662)
T 3azo_A          189 FVT--GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWN  266 (662)
T ss_dssp             EEC--CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred             ccc--CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeE
Confidence            222  23458999988877644        479999998 56   33333455678899999999999888888888  5


Q ss_pred             EEEEeCCCCCeeee
Q psy6442         189 LRLWQTNVGKTYGL  202 (231)
Q Consensus       189 v~iwd~~~~~~~~~  202 (231)
                      |.+||+.+++...+
T Consensus       267 l~~~~~~~~~~~~l  280 (662)
T 3azo_A          267 LHRVDPATGAATQL  280 (662)
T ss_dssp             EEEECTTTCCEEES
T ss_pred             EEEEECCCCceeec
Confidence            66666667765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=4.6e-11  Score=94.79  Aligned_cols=197  Identities=13%  Similarity=0.228  Sum_probs=127.8

Q ss_pred             CCCceeeeccCCCeEeeee------cccccEEEEEE-CCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCCCCce
Q psy6442           4 DGKPMLRQGDTGDWIGTFE------GHKGCVWGVDI-NKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSASAEV   75 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~------gH~~~V~~~~~-~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~~~~~   75 (231)
                      ++.|++|+.. |+.+..+.      +|...+..+++ .+++               ..+++.. .++.|++|| .+++.+
T Consensus        50 ~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g---------------~l~v~~~~~~~~i~~~d-~~g~~~  112 (286)
T 1q7f_A           50 NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG---------------DIIVTERSPTHQIQIYN-QYGQFV  112 (286)
T ss_dssp             GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT---------------EEEEEECGGGCEEEEEC-TTSCEE
T ss_pred             CCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC---------------eEEEEcCCCCCEEEEEC-CCCcEE
Confidence            5567777755 66665553      23445667776 3432               2334442 278999999 556665


Q ss_pred             EEEEeC--CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          76 QKLEFG--AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        76 ~~~~~~--~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ..+...  ..+..++++|+++.+++.. ++.+.+|+... +.+..+...   ....  .+..++++.++++...+..|++
T Consensus       113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~--~i~~~~~g~l~v~~~~~~~i~~  189 (286)
T 1q7f_A          113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPN--GVVVNDKQEIFISDNRAHCVKV  189 (286)
T ss_dssp             EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEE--EEEECSSSEEEEEEGGGTEEEE
T ss_pred             EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcE--EEEECCCCCEEEEECCCCEEEE
Confidence            555432  4678999999998655543 57899999643 344443321   1233  3444788888888788899999


Q ss_pred             EeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCeeeeeeccC-CcccCCCCCCccccc
Q psy6442         150 FDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDG-TLRLWQTNVGKTYGLWKCIE-GGLNNSLGLDSSGHL  222 (231)
Q Consensus       150 ~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~-~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  222 (231)
                      ||. .+..+..+..  +...+..++++|+|+++++...++ .|++|+. .++....+.... ...+..++++++|++
T Consensus       190 ~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          190 FNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence            997 4555666543  346789999999999999998886 9999995 566665554322 223445666666653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.45  E-value=8e-13  Score=118.12  Aligned_cols=129  Identities=12%  Similarity=0.177  Sum_probs=91.6

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCC----cceeEEEccCCCEEEEEc----------CCeEEEEECCCcceEEeeec
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGA----VPNSLEISRDGTTITVTH----------GSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~  120 (231)
                      ++..+.|++|++||+.+++....+....    .+.+++|+||++.++...          ++.+.+||..+.+.+.....
T Consensus        29 ~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l  108 (719)
T 1z68_A           29 YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL  108 (719)
T ss_dssp             EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec
Confidence            3444569999999999998766665432    278999999999876543          37899999987765221112


Q ss_pred             cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCe-----------------eEEEEcCCCCEEEE
Q psy6442         121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPI-----------------HCVKFSPDGELYAS  182 (231)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V-----------------~~v~~spd~~~laS  182 (231)
                      ...+...  .++|+++.++++. +..|++|+..+++..... .++...|                 .+++|||||++|++
T Consensus       109 ~~~~~~~--~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~  185 (719)
T 1z68_A          109 PRPIQYL--CWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY  185 (719)
T ss_dssp             CSSBCCE--EECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred             Ccccccc--eECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence            2233333  3489999988875 779999999887654432 3333322                 48999999999999


Q ss_pred             eeCC
Q psy6442         183 GSED  186 (231)
Q Consensus       183 ~s~d  186 (231)
                      ++.|
T Consensus       186 ~~~d  189 (719)
T 1z68_A          186 AEFN  189 (719)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.44  E-value=1.4e-10  Score=101.32  Aligned_cols=185  Identities=17%  Similarity=0.184  Sum_probs=137.1

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCC--CCCceEEEEe
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVS--ASAEVQKLEF   80 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~--~~~~~~~~~~   80 (231)
                      .+++|.++|..+++.+.++... ..++.+.|+|+|+               ++++++.|+.|.+||+.  +.+.+..+..
T Consensus       175 ~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr---------------~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR---------------YLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             TTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC---------------EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC---------------EEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            5789999999999999988743 3567899999855               46777889999999996  7778888888


Q ss_pred             CCcceeEEEc----cCCCEEEEEc--CCeEEEEECCCcceEEeeeccc----------eeEEEEEEecCCCC-EEEEecC
Q psy6442          81 GAVPNSLEIS----RDGTTITVTH--GSCVTFLDANSLELIKEHKVPA----------QVHSASLLLNSERP-IFVCGGE  143 (231)
Q Consensus        81 ~~~~~~v~~~----~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~g~~  143 (231)
                      +..+..++++    ||++.++++.  .+.+.++|..+.+.++.+....          ......+..++++. +++.-.+
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            8888999999    6999888764  5789999999888877655321          11112233344444 4445566


Q ss_pred             CCeEEEEeCCCccee--eeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeeee
Q psy6442         144 DLKMYKFDYSTGAEI--ESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       144 d~~i~~~d~~~~~~~--~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .++|+++|......+  ..+. .....+++.|+|++++|..++ .++.|.++|+.+++......
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            799999998764322  2222 334577899999999775554 68889999999998877664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.44  E-value=4.6e-11  Score=94.79  Aligned_cols=174  Identities=13%  Similarity=0.214  Sum_probs=119.4

Q ss_pred             CCCceeeeccCCCeEeeeec-ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442           4 DGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--   80 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~g-H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--   80 (231)
                      ++.|++|+ .+|+.+..+.. +...+..+.++++++               .+++...++.|.+||.. ++.+..+..  
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~---------------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  161 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR---------------IIVVECKVMRVIIFDQN-GNVLHKFGCSK  161 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-SCEEEEEECTT
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC---------------EEEEECCCCEEEEEcCC-CCEEEEeCCCC
Confidence            56777777 56777776642 345677888877643               45666678899999964 455555542  


Q ss_pred             -CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCC-eEEEEeCCC
Q psy6442          81 -GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDL-KMYKFDYST  154 (231)
Q Consensus        81 -~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~  154 (231)
                       ...+..++++|++..+++.. ++.|.+|+... ..+..+...   ....  .+..++++.++++...+. .|++|+. +
T Consensus       162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~--~i~~d~~G~l~v~~~~~~~~i~~~~~-~  237 (286)
T 1q7f_A          162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPI--GVGINSNGEILIADNHNNFNLTIFTQ-D  237 (286)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEE--EEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCc--EEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence             23578999999988554433 57899999743 344443322   1233  344478888888887775 9999995 5


Q ss_pred             cceeeeccCCC--CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         155 GAEIESFKGHF--GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       155 ~~~~~~~~~h~--~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ++.+..+..+.  ..+.+++++|+|+++++ +.|++|++|++....+
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            66666665443  34789999999998887 5799999999866543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=1.5e-10  Score=92.42  Aligned_cols=189  Identities=13%  Similarity=0.098  Sum_probs=125.6

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--   80 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--   80 (231)
                      .++.|+.|+..++  +..+..+.+.+.++.++++++               .+++...++.|.+||..+++.......  
T Consensus        48 ~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~---------------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           48 RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH---------------LIACSHGLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC---------------EEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred             CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc---------------EEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence            3567888887766  667777788889999988754               355555678999999987775433321  


Q ss_pred             ---CCcceeEEEccCCCEEEEEc------------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE
Q psy6442          81 ---GAVPNSLEISRDGTTITVTH------------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        81 ---~~~~~~v~~~~~~~~~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (231)
                         ...++.++++|+++..+...                  .+.+..++.. ...............  +.+++++..++
T Consensus       111 ~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g--i~~s~dg~~lv  187 (296)
T 3e5z_A          111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG--LAFLPSGNLLV  187 (296)
T ss_dssp             TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE--EEECTTSCEEE
T ss_pred             CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc--EEECCCCCEEE
Confidence               12467899999998766421                  2355566654 222221111122233  34488898887


Q ss_pred             EecCCCeEEEEeCC-Ccce---eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCC
Q psy6442         140 CGGEDLKMYKFDYS-TGAE---IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLG  215 (231)
Q Consensus       140 ~g~~d~~i~~~d~~-~~~~---~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  215 (231)
                      +...+..|++|++. ++..   ...+..+...+..++++++|+++++.  ++.|.+|+.. ++....+..-..  ...+.
T Consensus       188 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~  262 (296)
T 3e5z_A          188 SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLC  262 (296)
T ss_dssp             EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEE
T ss_pred             EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEE
Confidence            77778999999986 4443   23333455667899999999988777  7889999986 777666654332  44455


Q ss_pred             C
Q psy6442         216 L  216 (231)
Q Consensus       216 ~  216 (231)
                      +
T Consensus       263 f  263 (296)
T 3e5z_A          263 F  263 (296)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.42  E-value=1.7e-11  Score=101.24  Aligned_cols=179  Identities=13%  Similarity=0.048  Sum_probs=119.8

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-c
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-P   84 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~   84 (231)
                      ++++|+..+|+......+|...+....|+|+++               .|+.++.++.|++||+.+++.......... .
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~---------------~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  125 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD---------------ALFYVKDGRNLMRVDLATLEENVVYQVPAEWV  125 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSS---------------EEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCC---------------EEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence            377778888887777777766666677888754               577778889999999999887665554432 2


Q ss_pred             e--eEEEccCCCEEEEE-----------------------cCCeEEEEECCCcceEEeeeccceeEEEEEEecC-CCCEE
Q psy6442          85 N--SLEISRDGTTITVT-----------------------HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNS-ERPIF  138 (231)
Q Consensus        85 ~--~v~~~~~~~~~~~~-----------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  138 (231)
                      .  ...++|++..++..                       ....+.++|..+.+.......+..+....  ++| ++..+
T Consensus       126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~sp~dg~~l  203 (388)
T 3pe7_A          126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPI--YRPYDDSTV  203 (388)
T ss_dssp             EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEE--EETTEEEEE
T ss_pred             cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccE--ECCCCCCEE
Confidence            2  23348888877532                       12578889988776544444333343333  478 88877


Q ss_pred             EEecC------CCeEEEEeCCCcceeeeccCCC--CCeeEEEEcCCCCEEEEeeC--CC---cEEEEeCCCCCeeee
Q psy6442         139 VCGGE------DLKMYKFDYSTGAEIESFKGHF--GPIHCVKFSPDGELYASGSE--DG---TLRLWQTNVGKTYGL  202 (231)
Q Consensus       139 ~~g~~------d~~i~~~d~~~~~~~~~~~~h~--~~V~~v~~spd~~~laS~s~--d~---~v~iwd~~~~~~~~~  202 (231)
                      +....      ...|+++|...+. ...+..+.  ..+...+|||||+.|+..+.  ++   .|.+||+.+++...+
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          204 AFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             EEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred             EEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence            76554      3478888876554 33444344  35788999999997765543  22   399999999986443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.41  E-value=2.7e-10  Score=92.23  Aligned_cols=199  Identities=13%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC----CCEEEEeCCCCCceEEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED----KTVRLWDVSASAEVQKL   78 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D----~ti~iwd~~~~~~~~~~   78 (231)
                      .++.|++|+..+++....+..+...+.++.+++++++               +++...+    +.|.+||..++.....+
T Consensus        64 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l---------------~v~~~~~~~~~~~i~~~d~~~~~~~~~~  128 (333)
T 2dg1_A           64 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL---------------FVCYLGDFKSTGGIFAATENGDNLQDII  128 (333)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE---------------EEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE---------------EEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence            4567888888877766554456678899999887543               4554444    68999998877654333


Q ss_pred             E---eCCcceeEEEccCCCEEEEEcC-------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeE
Q psy6442          79 E---FGAVPNSLEISRDGTTITVTHG-------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKM  147 (231)
Q Consensus        79 ~---~~~~~~~v~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i  147 (231)
                      .   ....+..++++|++...+....       +.+..++....+.............  +.+++++..+ ++...++.|
T Consensus       129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--i~~~~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG--IALSTDEKVLWVTETTANRL  206 (333)
T ss_dssp             CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE--EEECTTSSEEEEEEGGGTEE
T ss_pred             ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccc--eEECCCCCEEEEEeCCCCeE
Confidence            2   1245789999999987665542       4566666554333222111112223  3447888744 555667899


Q ss_pred             EEEeCCC-cceee--------eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc-----ccCC
Q psy6442         148 YKFDYST-GAEIE--------SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG-----LNNS  213 (231)
Q Consensus       148 ~~~d~~~-~~~~~--------~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~-----~~~~  213 (231)
                      ++||..+ +..+.        .+.++ ..+..++++++|+++++...++.|.+||. .++....+..-...     ....
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred             EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcce
Confidence            9999853 33221        12233 46788999999999998888899999998 56666555432110     3455


Q ss_pred             CCCCccc
Q psy6442         214 LGLDSSG  220 (231)
Q Consensus       214 ~~~~~~~  220 (231)
                      ++++++|
T Consensus       285 ~~~~~dg  291 (333)
T 2dg1_A          285 PQFIPGT  291 (333)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            5565554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.41  E-value=4.6e-12  Score=113.91  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=97.8

Q ss_pred             ccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC------cceeEEEccCCCEEEEE
Q psy6442          26 GCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA------VPNSLEISRDGTTITVT   99 (231)
Q Consensus        26 ~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~   99 (231)
                      ...+++.|+|+++               .++++  |++|++||+.++++...+....      ...+++++||++.++..
T Consensus        17 ~~~~~~~w~~dg~---------------~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~   79 (740)
T 4a5s_A           17 LKLYSLRWISDHE---------------YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE   79 (740)
T ss_dssp             CCCCCEEECSSSE---------------EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred             ccccccEECCCCc---------------EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE
Confidence            3456789999854               35664  8999999999998766554322      12348899999987765


Q ss_pred             cC----------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCe
Q psy6442         100 HG----------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPI  168 (231)
Q Consensus       100 ~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V  168 (231)
                      .+          +.+.+||..+.+.......+......  .++|+++.++.+ .+..|++|+..++...+. ..++...+
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~--~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWV--TWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEE--EECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceee--EECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence            43          46679999887654433323334433  449999999887 468999999987765432 23443333


Q ss_pred             -----------------eEEEEcCCCCEEEEeeCC
Q psy6442         169 -----------------HCVKFSPDGELYASGSED  186 (231)
Q Consensus       169 -----------------~~v~~spd~~~laS~s~d  186 (231)
                                       ..++|||||++||.++.|
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d  191 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence                             358999999999988643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=5.7e-11  Score=94.60  Aligned_cols=150  Identities=9%  Similarity=0.080  Sum_probs=117.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCC--cceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      ++.|++++.|+.|.+||..+++.+.++....  .+.++.+.|+++.++ +.++.+..+|. +.+.+..++.+........
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            5678999999999999999999988887653  688999999998777 66778999998 7778877776522222233


Q ss_pred             EecCCCCEEEEecC-CCeEEEEeCCCcceeeecc------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         130 LLNSERPIFVCGGE-DLKMYKFDYSTGAEIESFK------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       130 ~~~~~~~~~~~g~~-d~~i~~~d~~~~~~~~~~~------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      ...+++..+++.+. +++++.+|. +++.+.++.      ++......+++.++|+++++...++.|..||.. |+....
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            44788999888776 788888885 677666543      233456678899999999999999999999998 987665


Q ss_pred             eec
Q psy6442         203 WKC  205 (231)
Q Consensus       203 ~~~  205 (231)
                      ++.
T Consensus       161 ~~~  163 (276)
T 3no2_A          161 VKL  163 (276)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.40  E-value=1.5e-11  Score=108.77  Aligned_cols=165  Identities=10%  Similarity=0.001  Sum_probs=110.9

Q ss_pred             CeEeeeec-----ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC----------CCEEEEeCCC------CCc
Q psy6442          16 DWIGTFEG-----HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED----------KTVRLWDVSA------SAE   74 (231)
Q Consensus        16 ~~i~~l~g-----H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D----------~ti~iwd~~~------~~~   74 (231)
                      .....+..     |...+..+.|+|||+.+               +.++.|          .+|++||+.+      ++.
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l---------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  179 (662)
T 3azo_A          115 AVPRPLTPVSAVGGGLRWADPVLLPERGEV---------------WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV  179 (662)
T ss_dssp             CCCEECSCCCCSTTCEEEEEEEEETTTTEE---------------EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred             CCCEeccCCccCCCCccccCcEECCCCCEE---------------EEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence            44555665     67788899999987654               444444          5799999987      544


Q ss_pred             eEEE-EeCCcceeEEEccCCCEEEE-EcC--------CeEEEEECC-Cc---ceEEeeec-cceeEEEEEEecCCCCEEE
Q psy6442          75 VQKL-EFGAVPNSLEISRDGTTITV-THG--------SCVTFLDAN-SL---ELIKEHKV-PAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        75 ~~~~-~~~~~~~~v~~~~~~~~~~~-~~~--------~~i~~~d~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~  139 (231)
                      .... .....+..++|+|||+.++. +.+        ..|.+||.. +.   ........ ...+..  ..++|++++++
T Consensus       180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~--~~~spdg~l~~  257 (662)
T 3azo_A          180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ--AEWAPDGSLIV  257 (662)
T ss_dssp             EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE--EEECTTSCEEE
T ss_pred             eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc--eEECCCCeEEE
Confidence            3222 22345678899999998764 322        378899987 44   22222222 223333  34488888777


Q ss_pred             EecCCC--eEEEEeCCCcceeeeccCCCCC--------eeEEEEcCCCCEEEEeeCCCcEEEE--eCCCCC
Q psy6442         140 CGGEDL--KMYKFDYSTGAEIESFKGHFGP--------IHCVKFSPDGELYASGSEDGTLRLW--QTNVGK  198 (231)
Q Consensus       140 ~g~~d~--~i~~~d~~~~~~~~~~~~h~~~--------V~~v~~spd~~~laS~s~d~~v~iw--d~~~~~  198 (231)
                      +++.++  +|+.||..+++......++...        +.+++|+|+++++++++. +.++||  |...++
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence            777777  7888888676654444434332        568999999999999999 999999  665555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.38  E-value=1.9e-10  Score=93.10  Aligned_cols=200  Identities=11%  Similarity=0.080  Sum_probs=130.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE-Ee
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL-EF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~-~~   80 (231)
                      +.+++++.|   .++....+.+|...+.++.|+++++               .++++..++.|.+||..+++..... ..
T Consensus        24 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~---------------l~~~~~~~~~i~~~d~~~~~~~~~~~~~   85 (333)
T 2dg1_A           24 ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ---------------LFLLDVFEGNIFKINPETKEIKRPFVSH   85 (333)
T ss_dssp             CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC---------------EEEEETTTCEEEEECTTTCCEEEEEECS
T ss_pred             eecccCccc---ccceeEEEeccCccccCcEECCCCC---------------EEEEECCCCEEEEEeCCCCcEEEEeeCC
Confidence            346777888   3667777877877888999988754               3567778899999999887765443 23


Q ss_pred             CCcceeEEEccCCCEEEEEcC-----CeEEEEECCCcceEEeee---ccceeEEEEEEecCCCCEEEEecC------CCe
Q psy6442          81 GAVPNSLEISRDGTTITVTHG-----SCVTFLDANSLELIKEHK---VPAQVHSASLLLNSERPIFVCGGE------DLK  146 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~------d~~  146 (231)
                      ...+..++++|+++.+++...     +.+..||...........   ....+..  +..++++.++++...      .+.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD--MVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE--EEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc--eEECCCCCEEEEeccccccCCCce
Confidence            467899999999987766544     488899987655432221   1112333  344788887776553      367


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCC-CCeeeee-----eccC-CcccCCCCCCc
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL-YASGSEDGTLRLWQTNV-GKTYGLW-----KCIE-GGLNNSLGLDS  218 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~~-~~~~~~~-----~~~~-~~~~~~~~~~~  218 (231)
                      |+.+|...++.. .+..+...+..++|+|+++. +++.+.++.|.+|+..+ ++....+     .... ...+..+.++.
T Consensus       164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~  242 (333)
T 2dg1_A          164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  242 (333)
T ss_dssp             EEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             EEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC
Confidence            888887654432 22233446789999999984 46666788999999864 4432211     1111 12444566666


Q ss_pred             cccc
Q psy6442         219 SGHL  222 (231)
Q Consensus       219 ~~~~  222 (231)
                      +|+.
T Consensus       243 ~G~l  246 (333)
T 2dg1_A          243 DDNL  246 (333)
T ss_dssp             TCCE
T ss_pred             CCCE
Confidence            6654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.36  E-value=2.6e-10  Score=91.00  Aligned_cols=190  Identities=14%  Similarity=0.147  Sum_probs=128.4

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDG   93 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~   93 (231)
                      +..+..+..+.....++.|+|+++.              .+++...++.|..||...+  ...+.. ...+..++++|++
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~--------------l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg   80 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSA--------------VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG   80 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTE--------------EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC
T ss_pred             CCcEEEEecCCccccCCeEeCCCCE--------------EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC
Confidence            4455566666677788899887542              3677778899999999877  444443 4568899999999


Q ss_pred             CEEEEEc-CCeEEEEECCCcceEEeeec-c-cee-EEEEEEecCCCCEEEE----ec-------------CCCeEEEEeC
Q psy6442          94 TTITVTH-GSCVTFLDANSLELIKEHKV-P-AQV-HSASLLLNSERPIFVC----GG-------------EDLKMYKFDY  152 (231)
Q Consensus        94 ~~~~~~~-~~~i~~~d~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~----g~-------------~d~~i~~~d~  152 (231)
                      ..+++.. ++.+.+||..+.+....... . ... ....+..++++.++++    |.             ..+.|+.++.
T Consensus        81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            9776665 47899999866554332211 1 110 0112334788888876    33             1357888876


Q ss_pred             CCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCe---eeeeeccCCcccCCCCCCcccccc
Q psy6442         153 STGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKT---YGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       153 ~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      . ++ +..+..+...++.++|+|++++|++.+.++.|.+|++. +++.   ...+ ......+..+.++.+|++|
T Consensus       161 ~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~  232 (296)
T 3e5z_A          161 D-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIW  232 (296)
T ss_dssp             T-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEE
T ss_pred             C-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEE
Confidence            5 44 34445566778999999999988888889999999986 5554   3344 3345566677888887654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.34  E-value=1.5e-10  Score=94.07  Aligned_cols=174  Identities=16%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             CCCceeeeccCCC--eEeee---------ecccccEEEEEECCCCceeEeccccccccCCCEEEEEe-CCCCEEEEeCCC
Q psy6442           4 DGKPMLRQGDTGD--WIGTF---------EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA-EDKTVRLWDVSA   71 (231)
Q Consensus         4 d~~~~~~~~~~g~--~i~~l---------~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s-~D~ti~iwd~~~   71 (231)
                      ++.|++|+.+ |+  .+.++         .++-.....++++|+              ++..+++.+ .++.|++|| .+
T Consensus       111 ~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--------------~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          111 LHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--------------TGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--------------TCCEEEEECSSCCEEEEEC-TT
T ss_pred             CCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCC--------------CCeEEEEeCCCCCeEEEEc-CC
Confidence            4566666644 33  44444         234445677777762              133456665 589999999 55


Q ss_pred             CCceEEEEe-C----------CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCC
Q psy6442          72 SAEVQKLEF-G----------AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSER  135 (231)
Q Consensus        72 ~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~  135 (231)
                      ++.+..+.. .          ..+..++++|++..++++  .++.|.+|+..+.+.+..+..+   .....  +...| +
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~p-g  251 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA--ISYIP-G  251 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE--EEEET-T
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce--eeecC-C
Confidence            666555532 1          237899999995555554  3568999999877776665432   12222  23355 3


Q ss_pred             CEEEE-------ecCCCeEEEEeCCCcceeeec---cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         136 PIFVC-------GGEDLKMYKFDYSTGAEIESF---KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       136 ~~~~~-------g~~d~~i~~~d~~~~~~~~~~---~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ..+..       ...+.+|++|+..+++.+..+   .++...+..|+++|+|.++++...++.|++|++..
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            33333       334458999999999988877   46777899999999999999999999999999753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.28  E-value=4.1e-10  Score=91.52  Aligned_cols=181  Identities=13%  Similarity=0.083  Sum_probs=111.8

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------CCCEEEEEeCCCCEEEEeCCCC
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------NNTRLISCAEDKTVRLWDVSAS   72 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------~~~~l~s~s~D~ti~iwd~~~~   72 (231)
                      ++++++..+|+....... .. +..+.|+|+++.++..+.+....             ++..+ .......|.+||+.++
T Consensus        86 ~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           86 EIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF-FDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTT
T ss_pred             eEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc-ccCccceEEEEECCCC
Confidence            477778777776554443 34 89999999988776654321000             00000 0012357899999888


Q ss_pred             CceEEEEeCCcceeEEEccCCCEEEEEc-C---------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEec
Q psy6442          73 AEVQKLEFGAVPNSLEISRDGTTITVTH-G---------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGG  142 (231)
Q Consensus        73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  142 (231)
                      +.+..+... .+..++|+|++ .++++. +         ..+..+|  +.+...... ....  ..+  +|+++.++..+
T Consensus       163 ~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-~~~~--~~~--spdg~~l~~~~  233 (347)
T 2gop_A          163 EVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE-KVSF--YAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE-EESE--EEE--EECSSCEEEEE
T ss_pred             eEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEecc-Ccce--eeE--CCCCCEEEEEE
Confidence            763444434 77899999999 665542 1         2344555  333222221 1111  222  67887776655


Q ss_pred             CC--------CeEEEEeCCCcceeeeccCCCCCeeE-EEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         143 ED--------LKMYKFDYSTGAEIESFKGHFGPIHC-VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       143 ~d--------~~i~~~d~~~~~~~~~~~~h~~~V~~-v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+        ..|++||  +++......+|...+.. +.|+ |+ ++++++.++.++|| +.+++...+.
T Consensus       234 ~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~  298 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA  298 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred             ccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence            33        4788998  55555555667778886 9999 88 99999999999999 8766654443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=8.5e-11  Score=96.92  Aligned_cols=149  Identities=9%  Similarity=-0.054  Sum_probs=91.6

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-cee-------------------EEEccCCCEEEE------EcCCeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-PNS-------------------LEISRDGTTITV------THGSCVT  105 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~~~-------------------v~~~~~~~~~~~------~~~~~i~  105 (231)
                      ++.|+.++.+++|.+||+.+++.......... ...                   +.++|++..++.      .....+.
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence            45577778888999999988876554443221 111                   235666664432      2335788


Q ss_pred             EEECCCcceEEeeeccceeEEEEEEecC-CCCEEEEecCC------CeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCC
Q psy6442         106 FLDANSLELIKEHKVPAQVHSASLLLNS-ERPIFVCGGED------LKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDG  177 (231)
Q Consensus       106 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d------~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~  177 (231)
                      +||..+.+..........+....+  +| ++..++..+.+      ..|+++|...+......... ...+..++|+|||
T Consensus       172 ~~d~~~g~~~~~~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (396)
T 3c5m_A          172 KVDIETGELEVIHQDTAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG  249 (396)
T ss_dssp             EEETTTCCEEEEEEESSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred             EEECCCCcEEeeccCCcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence            899877665444433333433333  66 56655544322      46899998665433322211 2357889999999


Q ss_pred             CEEEEeeCC-----CcEEEEeCCCCCeeee
Q psy6442         178 ELYASGSED-----GTLRLWQTNVGKTYGL  202 (231)
Q Consensus       178 ~~laS~s~d-----~~v~iwd~~~~~~~~~  202 (231)
                      ++|+.++.+     +.|.+||+.+++...+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (396)
T 3c5m_A          250 SAMAYVSYFKGQTDRVIYKANPETLENEEV  279 (396)
T ss_dssp             SCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred             CEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence            987777544     4499999998876544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.26  E-value=4.8e-09  Score=87.01  Aligned_cols=189  Identities=11%  Similarity=0.070  Sum_probs=124.7

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC----
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG----   81 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~----   81 (231)
                      +|.++|..+++.+.++.....+  .+.++||++.+..+.....     ...-+..+++|.++|..+.+.+..+...    
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~-----~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFS-----RIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEecccc-----ccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence            7899999999999888765555  8899998765432110000     0000113678999999988888777654    


Q ss_pred             ----CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEe-eeccceeE----------------------------
Q psy6442          82 ----AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKE-HKVPAQVH----------------------------  125 (231)
Q Consensus        82 ----~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~-~~~~~~~~----------------------------  125 (231)
                          ..+..++++||++.+++..   .+.+.++| .+.+.+.. ...+..+.                            
T Consensus       121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~  199 (373)
T 2mad_H          121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence                3467899999999988753   36788899 87766555 32210000                            


Q ss_pred             --------------------------E----------E---------------------------------EEEecCCCC
Q psy6442         126 --------------------------S----------A---------------------------------SLLLNSERP  136 (231)
Q Consensus       126 --------------------------~----------~---------------------------------~~~~~~~~~  136 (231)
                                                .          .                                 .+.+++++.
T Consensus       200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence                                      0          0                                 001122222


Q ss_pred             EEEEecC----------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCCeeeee
Q psy6442         137 IFVCGGE----------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       137 ~~~~g~~----------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+.....          ...|.++|..+++.+.++.. ......++|+|||+ ++.++. .+++|.++|+.+++.....
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            2222211          24688889888888777752 23578999999998 777776 5999999999999988764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.23  E-value=4.1e-10  Score=91.47  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC---C--CEEEEeCCCCCceEEE
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED---K--TVRLWDVSASAEVQKL   78 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D---~--ti~iwd~~~~~~~~~~   78 (231)
                      ++++++|+..+|+... +    ..+..+.|+|+|+.++.               ++.+   +  .|.+||+.+++.....
T Consensus        42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~---------------~~~~~~~~~~~l~~~~~~~g~~~~l~  101 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAF---------------MRANEEKKVSEIWVADLETLSSKKIL  101 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEE---------------EEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEE---------------EEeccCCCcceEEEEECCCCceEEEE
Confidence            5678888988776533 4    56788999999776543               3322   2  4778888887766555


Q ss_pred             EeCCcceeEEEccCCCEEEEEc----------------------------CCeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442          79 EFGAVPNSLEISRDGTTITVTH----------------------------GSCVTFLDANSLELIKEHKVPAQVHSASLL  130 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~~~----------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  130 (231)
                      .... +..++|+||++.++...                            ...+.+||..+.+.++....+ .+....  
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~--  177 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGI--  177 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEE--
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-Cccccc--
Confidence            5555 88999999999776542                            146778888776652333222 333333  


Q ss_pred             ecCCCCEEEEecCC---------CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEe
Q psy6442         131 LNSERPIFVCGGED---------LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED--------GTLRLWQ  193 (231)
Q Consensus       131 ~~~~~~~~~~g~~d---------~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d--------~~v~iwd  193 (231)
                      ++|++ +++++..+         ..|+.+|  +++ ...+..+ ..+..+  +|||++|+.++.+        ..|.+||
T Consensus       178 ~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          178 WHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             CCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence            47888 66666433         2566666  444 3344334 555554  9999988877754        3577888


Q ss_pred             CCCCCeee
Q psy6442         194 TNVGKTYG  201 (231)
Q Consensus       194 ~~~~~~~~  201 (231)
                        +++...
T Consensus       251 --~~~~~~  256 (347)
T 2gop_A          251 --GKEVMG  256 (347)
T ss_dssp             --SSCEEE
T ss_pred             --CCceEe
Confidence              555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.22  E-value=2.2e-10  Score=94.41  Aligned_cols=139  Identities=13%  Similarity=0.034  Sum_probs=88.7

Q ss_pred             eCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc-CCCEEE-EEcC------CeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442          59 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTIT-VTHG------SCVTFLDANSLELIKEHKVPAQVHSASLL  130 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  130 (231)
                      ..+..|.+||+.+++..........+..+.|+| ++..++ +..+      ..+.+++......................
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred             CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence            356689999999887765555566778899999 777554 3332      35777887654432222211111222334


Q ss_pred             ecCCCCEEEEecCC-----CeEEEEeCCCcceeeeccCCCCCeeEEEEcC-CCCEEEEee----------------CCCc
Q psy6442         131 LNSERPIFVCGGED-----LKMYKFDYSTGAEIESFKGHFGPIHCVKFSP-DGELYASGS----------------EDGT  188 (231)
Q Consensus       131 ~~~~~~~~~~g~~d-----~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp-d~~~laS~s----------------~d~~  188 (231)
                      ++|+++.++..+.+     ..|++||+.+++...... .. ... +.|+| ||+++++++                .+..
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            58888876665433     459999998776433221 11 123 89999 999888764                3478


Q ss_pred             EEEEeCCCCCee
Q psy6442         189 LRLWQTNVGKTY  200 (231)
Q Consensus       189 v~iwd~~~~~~~  200 (231)
                      |.+||+.+++..
T Consensus       322 i~~~d~~~~~~~  333 (396)
T 3c5m_A          322 LYVLNTKAKSAQ  333 (396)
T ss_dssp             EEEEETTTTBCC
T ss_pred             EEEEecccCceE
Confidence            999999888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.21  E-value=3.9e-09  Score=84.36  Aligned_cols=198  Identities=11%  Similarity=0.112  Sum_probs=123.3

Q ss_pred             cCCCceeeeccCCCeEeeee----cccccEEEEEECCC-CceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFE----GHKGCVWGVDINKD-ASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~----gH~~~V~~~~~~~~-~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      .++.|++|+..+|+......    ++.+.+.++.++++ ++                |..+.....|.+||.. ++....
T Consensus        44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~----------------l~v~~~~~~l~~~d~~-g~~~~~  106 (314)
T 1pjx_A           44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ----------------LFVADMRLGLLVVQTD-GTFEEI  106 (314)
T ss_dssp             ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE----------------EEEEETTTEEEEEETT-SCEEEC
T ss_pred             CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc----------------EEEEECCCCEEEEeCC-CCEEEE
Confidence            35678888877777643222    25567888888876 43                3334444578889987 554322


Q ss_pred             -EEe-----CCcceeEEEccCCCEEEEEcC----------------CeEEEEECCCcceEEeeeccceeEEEEEEec---
Q psy6442          78 -LEF-----GAVPNSLEISRDGTTITVTHG----------------SCVTFLDANSLELIKEHKVPAQVHSASLLLN---  132 (231)
Q Consensus        78 -~~~-----~~~~~~v~~~~~~~~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---  132 (231)
                       ...     ...+..+++.++++..+....                +.+..++.. .+.............+.+  +   
T Consensus       107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~--~~~~  183 (314)
T 1pjx_A          107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV--RHMN  183 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE--EECT
T ss_pred             EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEE--eccc
Confidence             111     124789999999987665532                456667654 333222211112223333  5   


Q ss_pred             -CCCCE-EEEecCCCeEEEEeCC-Ccc-----eeeeccCCC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         133 -SERPI-FVCGGEDLKMYKFDYS-TGA-----EIESFKGHF-GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       133 -~~~~~-~~~g~~d~~i~~~d~~-~~~-----~~~~~~~h~-~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                       +++.. .++...++.|+.||.. ++.     ....+.++. ..+..++++++|+++++...++.|.+||..+++.....
T Consensus       184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          184 DGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             TSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence             77754 4555567899999875 343     233444554 66889999999999999888899999999877766555


Q ss_pred             eccCCcccCCCCCCcccc
Q psy6442         204 KCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~  221 (231)
                      .. .......++++++|+
T Consensus       264 ~~-~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          264 RC-PFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EC-SSSCEEEEEECTTSS
T ss_pred             eC-CCCCceeEEECCCCC
Confidence            43 224455566666665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.21  E-value=1.9e-09  Score=96.42  Aligned_cols=211  Identities=11%  Similarity=0.019  Sum_probs=120.1

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCC-CEEEEEeCCCCEEEEeCCCCCceEEE--Ee--
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNN-TRLISCAEDKTVRLWDVSASAEVQKL--EF--   80 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~-~~l~s~s~D~ti~iwd~~~~~~~~~~--~~--   80 (231)
                      +|++|+..+|+.+.....+ ..+..+.|+|||+.++.+..+...... ...-.......|++|++.++.....+  ..  
T Consensus       152 ~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            7999999999887643323 236678999987665443322110000 00000001223999999887643222  22  


Q ss_pred             -CCcceeEEEccCCCEEEEEc------CCeEEEEECCC------cc-eEEeeeccceeEEEEEEecCCCCEEEEecC---
Q psy6442          81 -GAVPNSLEISRDGTTITVTH------GSCVTFLDANS------LE-LIKEHKVPAQVHSASLLLNSERPIFVCGGE---  143 (231)
Q Consensus        81 -~~~~~~v~~~~~~~~~~~~~------~~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---  143 (231)
                       ......+.++||++.++...      ...+.++|..+      .. .......+.......+  ++++..++..+.   
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~--s~dg~~l~~~s~~~~  308 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV--TNEGTVFTFKTNRHS  308 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE--EEETTEEEEEECTTC
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEE--eccCCEEEEEECCCC
Confidence             12356899999999876532      45788899765      32 2333322221111223  445555444332   


Q ss_pred             -CCeEEEEeCCCcc--eeeeccCCCC--CeeEEEEcCCCCEEEEeeCCCc--EEEEeCCCCCeeeeeeccCCcccCCCCC
Q psy6442         144 -DLKMYKFDYSTGA--EIESFKGHFG--PIHCVKFSPDGELYASGSEDGT--LRLWQTNVGKTYGLWKCIEGGLNNSLGL  216 (231)
Q Consensus       144 -d~~i~~~d~~~~~--~~~~~~~h~~--~V~~v~~spd~~~laS~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (231)
                       ...|+.||+.++.  ....+..|..  .+.+++|++++.++++...|+.  |.+|++.+|+.......- ......+++
T Consensus       309 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~  387 (710)
T 2xdw_A          309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSG  387 (710)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEEC
T ss_pred             CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEec
Confidence             3479999997764  2344444543  6888999988889999998885  556677677755444432 233333444


Q ss_pred             Cccc
Q psy6442         217 DSSG  220 (231)
Q Consensus       217 ~~~~  220 (231)
                      .+++
T Consensus       388 s~d~  391 (710)
T 2xdw_A          388 QKKD  391 (710)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            4443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.17  E-value=4.6e-09  Score=82.22  Aligned_cols=165  Identities=10%  Similarity=0.105  Sum_probs=104.0

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      +..+++.. ++.|.+||...+... .+...  ..+..+++.+++...++. .++.+..++............. .....+
T Consensus        78 g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           78 GTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             CCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             CCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            34344444 889999998765432 22222  467899999998855443 3568888876544332211111 122223


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccC
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIE  207 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~  207 (231)
                        ..++++.++++...++.|+.||............+...+.+++++|+|.++++...++.|.+|+........ .....
T Consensus       156 --~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~  232 (270)
T 1rwi_B          156 --AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTG  232 (270)
T ss_dssp             --EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCS
T ss_pred             --EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCC
Confidence              347788877777778899999987665444333344678999999999999988889999999986654322 11111


Q ss_pred             CcccCCCCCCcccc
Q psy6442         208 GGLNNSLGLDSSGH  221 (231)
Q Consensus       208 ~~~~~~~~~~~~~~  221 (231)
                      -..+..|+++++|.
T Consensus       233 ~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          233 LNTPLAVAVDSDRT  246 (270)
T ss_dssp             CSCEEEEEECTTCC
T ss_pred             CCCceeEEECCCCC
Confidence            12345566666664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.15  E-value=9.3e-10  Score=91.46  Aligned_cols=134  Identities=10%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCC-----------ceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEee-e
Q psy6442          52 NTRLISCAEDKTVRLWDVSASA-----------EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEH-K  119 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~  119 (231)
                      .+.+++|+.| .+++|++.+..           ....+.++. +..++|  ++..++++.++.+++||.......... .
T Consensus        49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~~~~  124 (388)
T 1xip_A           49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRTVTS  124 (388)
T ss_dssp             TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEEEEE
T ss_pred             CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCccce
Confidence            4567888887 56679864322           224456666 999999  888888888899999998765543322 2


Q ss_pred             ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      ....+..+... .+   .++.+..|+.+++||++++....    +...|.+++|||+|  ++.+..||++++|+...++.
T Consensus       125 ~~~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          125 FEKPVFQLKNV-NN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             CSSCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             eecceeeEEec-CC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            22333332221 22   37888999999999998776543    45689999999999  67899999999998877663

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.15  E-value=9.4e-09  Score=80.41  Aligned_cols=145  Identities=8%  Similarity=0.042  Sum_probs=97.6

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHSAS  128 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  128 (231)
                      +..+++...++.|.+|+..+......... ...+..++++++++..++.. ++.|..++............. ....  .
T Consensus       119 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~--~  196 (270)
T 1rwi_B          119 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW--G  196 (270)
T ss_dssp             CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE--E
T ss_pred             CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce--E
Confidence            33456666678899997655443222111 23678999999998554443 468999997765443322111 1223  3


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +..++++.+.++...++.|+.|+............+...+.+++++|+|+++++...++.|++++....+
T Consensus       197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            4447888877777778899999986544333222344678999999999999999999999999987654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.15  E-value=7.2e-09  Score=85.46  Aligned_cols=171  Identities=11%  Similarity=0.071  Sum_probs=120.1

Q ss_pred             CCCceeeeccCCCeEeeeecc------cccEEEEEECCCCceeEecccc--c--------------c-c-----------
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKDASKAASGAAD--F--------------Q-A-----------   49 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH------~~~V~~~~~~~~~~~~~s~~~d--~--------------~-~-----------   49 (231)
                      +++|.+|+..+++.+.++..+      ......+.++|+|+.+..+...  .              . +           
T Consensus        80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~  159 (361)
T 2oiz_A           80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQ  159 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEc
Confidence            667999999999998887632      2345678999999988765321  0              0 0           


Q ss_pred             -cCCCEEEEEeCCCCEEEEeCCC-CCceE------------------------------------EEEeC----------
Q psy6442          50 -KNNTRLISCAEDKTVRLWDVSA-SAEVQ------------------------------------KLEFG----------   81 (231)
Q Consensus        50 -~~~~~l~s~s~D~ti~iwd~~~-~~~~~------------------------------------~~~~~----------   81 (231)
                       .....+++.+.||++.+|+... ++...                                    .+...          
T Consensus       160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence             0124567777888888877643 22210                                    00000          


Q ss_pred             --------------CcceeEEEccCCCEEEEEc------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCC
Q psy6442          82 --------------AVPNSLEISRDGTTITVTH------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSER  135 (231)
Q Consensus        82 --------------~~~~~v~~~~~~~~~~~~~------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (231)
                                    .....++++|++..+++..            ...+.+||..+.+.++.+..+. ...+  .++|++
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~i--a~spdg  316 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSM--TIDQQR  316 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEE--EEETTT
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEE--EECCCC
Confidence                          0011268889988877652            2479999999999888887766 4444  448899


Q ss_pred             CEEEEecCCCeEEEEeCCCc--ceeeeccCCCCCeeEEEEcCCCC
Q psy6442         136 PIFVCGGEDLKMYKFDYSTG--AEIESFKGHFGPIHCVKFSPDGE  178 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~~~--~~~~~~~~h~~~V~~v~~spd~~  178 (231)
                      +++++++. +.|.+||..++  +.+.++..+....+.++++|+|+
T Consensus       317 ~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          317 NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            98888887 99999999999  88888766777889999999985

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=5.1e-09  Score=88.12  Aligned_cols=192  Identities=16%  Similarity=0.158  Sum_probs=128.0

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC---
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG---   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~---   81 (231)
                      ++|.+.|..+++.+.++.-...+  .+.++||++.+..+.....     +...+..+++|.++|..+.+.+..+..+   
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~-----~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFE-----RIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEE-----ETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEecccc-----ccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            78999999999999998755556  7999999765432110000     0000114678999999999998888774   


Q ss_pred             -----CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEE--------EE-----------------
Q psy6442          82 -----AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHS--------AS-----------------  128 (231)
Q Consensus        82 -----~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~--------~~-----------------  128 (231)
                           ..+..++++||++.++++.   .+.+.++|..+.+.+.++..+.....        ..                 
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET  251 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence                 4578899999999998864   46899999988777665543210000        00                 


Q ss_pred             ------------------------------------------------------------------------EEecCCCC
Q psy6442         129 ------------------------------------------------------------------------LLLNSERP  136 (231)
Q Consensus       129 ------------------------------------------------------------------------~~~~~~~~  136 (231)
                                                                                              +.+++++.
T Consensus       252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~  331 (426)
T 3c75_H          252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD  331 (426)
T ss_dssp             EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred             EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence                                                                                    00011112


Q ss_pred             EEEEec----------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCCeeeeee
Q psy6442         137 IFVCGG----------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       137 ~~~~g~----------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .+....          ....|.++|..+.+.+.++..- .....++|+||++ ++.++. .++.|.++|+.+++....+.
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence            111111          1235777777777766666421 2478899999998 777777 69999999999999988874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.11  E-value=1.1e-08  Score=91.32  Aligned_cols=198  Identities=13%  Similarity=0.037  Sum_probs=116.6

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccE--EEEEECCCCceeEeccccccccCCCEEEEEeCCCC-------------EEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKNNTRLISCAEDKT-------------VRL   66 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V--~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t-------------i~i   66 (231)
                      +.+.+|++|+..+|+.+.  ..+-..+  ..+.|+|||+.               |+.++.|.+             |++
T Consensus       144 ~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~---------------l~~~~~d~~~~~~~~~~~~~~~v~~  206 (695)
T 2bkl_A          144 ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG---------------FYYEWLPTDPSIKVDERPGYTTIRY  206 (695)
T ss_dssp             CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE---------------EEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred             CceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE---------------EEEEEecCCCCCccccCCCCCEEEE
Confidence            345789999999998751  1122222  57889998654               555556655             999


Q ss_pred             EeCCCCCceEEE--Ee---CCcceeEEEccCCCEEEEE-cCC----eEEEEECCCcceEEeeeccceeEEEEEEecCCCC
Q psy6442          67 WDVSASAEVQKL--EF---GAVPNSLEISRDGTTITVT-HGS----CVTFLDANSLELIKEHKVPAQVHSASLLLNSERP  136 (231)
Q Consensus        67 wd~~~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (231)
                      |++.++.....+  ..   ...+..+.++||++.++.. .++    .+.+++................... + .+ ++.
T Consensus       207 ~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~-~~-~g~  283 (695)
T 2bkl_A          207 HTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV-H-AW-KDR  283 (695)
T ss_dssp             EETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE-E-EE-TTE
T ss_pred             EECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE-E-ec-CCc
Confidence            999887643222  22   1356789999999976653 222    5666665443322222211122211 2 13 333


Q ss_pred             EEEEec---CCCeEEEEeCCCcce--eeec-cCC-CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCeeeeeeccCC
Q psy6442         137 IFVCGG---EDLKMYKFDYSTGAE--IESF-KGH-FGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKTYGLWKCIEG  208 (231)
Q Consensus       137 ~~~~g~---~d~~i~~~d~~~~~~--~~~~-~~h-~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~~~~~~~~~~  208 (231)
                      +++...   .+.+|+.||+.++..  ...+ ..+ ...+.+++|+ ++.++++...|+..+||.+. .++.......-..
T Consensus       284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~  362 (695)
T 2bkl_A          284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGV  362 (695)
T ss_dssp             EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSS
T ss_pred             EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCC
Confidence            555544   357899999977642  2333 333 4568888998 67889999999999988654 3554333332223


Q ss_pred             cccCCCCCCccc
Q psy6442         209 GLNNSLGLDSSG  220 (231)
Q Consensus       209 ~~~~~~~~~~~~  220 (231)
                      .....+++.+++
T Consensus       363 ~~v~~~~~s~d~  374 (695)
T 2bkl_A          363 GAASNLMGLEDL  374 (695)
T ss_dssp             SEECCCBSCTTC
T ss_pred             eEEEEeecCCCC
Confidence            444455555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.10  E-value=7.9e-08  Score=75.92  Aligned_cols=164  Identities=9%  Similarity=0.094  Sum_probs=103.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHS  126 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~  126 (231)
                      +..+++...++.|..||.. ++ ...+..   ...+..+++.+++...++.. ++.+..+|. +.... .+..+ .....
T Consensus        68 g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~  143 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYP  143 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCE
T ss_pred             CCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCC
Confidence            3445555557889999876 33 333332   23678899999987666553 568888987 33332 22211 11112


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeee-ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~-~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..+..++++.+.++...++.|+.+|. +++.... +..+...+.+++++|+++++++...++.|.+|+. +++... +..
T Consensus       144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~  220 (299)
T 2z2n_A          144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI  220 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC
T ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC
Confidence            23344778888777777789999998 6554332 3344566889999999998888878889999999 666432 221


Q ss_pred             c-CCcccCCCCCCccccc
Q psy6442         206 I-EGGLNNSLGLDSSGHL  222 (231)
Q Consensus       206 ~-~~~~~~~~~~~~~~~~  222 (231)
                      - ....+..|.++.+|.+
T Consensus       221 ~~~~~~~~~i~~~~~g~l  238 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDL  238 (299)
T ss_dssp             SSTTCCEEEEEECSTTCE
T ss_pred             CCCCCCceeEEECCCCCE
Confidence            1 1233445566666553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=6.7e-09  Score=85.88  Aligned_cols=181  Identities=10%  Similarity=0.046  Sum_probs=125.1

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEe----------CCCCEEEEeCCCCCce
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCA----------EDKTVRLWDVSASAEV   75 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s----------~D~ti~iwd~~~~~~~   75 (231)
                      +|.+.|..+++.+.++.-...+  .+.++|++++               ++.+.          .+++|.+||..+++.+
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~---------------lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD---------------FALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSC---------------EEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCE---------------EEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            7789999999999998755556  6999998765               34443          3688999999999999


Q ss_pred             EEEEeC--------CcceeEEEccCCCEEEEEc---CCeEEE--EECCCcceEEe-------------------------
Q psy6442          76 QKLEFG--------AVPNSLEISRDGTTITVTH---GSCVTF--LDANSLELIKE-------------------------  117 (231)
Q Consensus        76 ~~~~~~--------~~~~~v~~~~~~~~~~~~~---~~~i~~--~d~~~~~~~~~-------------------------  117 (231)
                      .++..+        ..+..++++||++.++++.   ...+.+  +|..+...+..                         
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence            998875        4588999999999888764   345666  66533000000                         


Q ss_pred             eeccc-------------------------------------eeE----------------------------EEE---E
Q psy6442         118 HKVPA-------------------------------------QVH----------------------------SAS---L  129 (231)
Q Consensus       118 ~~~~~-------------------------------------~~~----------------------------~~~---~  129 (231)
                      .....                                     .+.                            ...   +
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v  269 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence            00000                                     000                            000   1


Q ss_pred             EecCCCCEEEEecC---------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEee-CCCcEEEEeCCCCC
Q psy6442         130 LLNSERPIFVCGGE---------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGS-EDGTLRLWQTNVGK  198 (231)
Q Consensus       130 ~~~~~~~~~~~g~~---------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s-~d~~v~iwd~~~~~  198 (231)
                      .+++++..+..+..         +..+.++|+.+.+.+.++.... ....++|+|||+ ++++.. .+++|.++|+.+++
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            13445555444322         2345599999998888876433 588999999997 667777 69999999999999


Q ss_pred             eeeeee
Q psy6442         199 TYGLWK  204 (231)
Q Consensus       199 ~~~~~~  204 (231)
                      ......
T Consensus       349 vv~~I~  354 (368)
T 1mda_H          349 DQSSVE  354 (368)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.04  E-value=1.9e-07  Score=74.55  Aligned_cols=180  Identities=13%  Similarity=0.078  Sum_probs=110.7

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC--
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--   81 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--   81 (231)
                      .++|+.|+..+++. ..+. +.+.+.++.++++++                |+.+. ++.|.+||..+++........  
T Consensus        34 ~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~----------------l~v~~-~~~l~~~d~~~g~~~~~~~~~~~   94 (297)
T 3g4e_A           34 AKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG----------------YVATI-GTKFCALNWKEQSAVVLATVDND   94 (297)
T ss_dssp             TTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS----------------EEEEE-TTEEEEEETTTTEEEEEEECCTT
T ss_pred             CCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC----------------EEEEE-CCeEEEEECCCCcEEEEEecCCC
Confidence            35566666655544 2222 345677777777654                23333 567999998877654333321  


Q ss_pred             ---CcceeEEEccCCCEEEEEcC------------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCC
Q psy6442          82 ---AVPNSLEISRDGTTITVTHG------------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDL  145 (231)
Q Consensus        82 ---~~~~~v~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~  145 (231)
                         ..++.++++|+++..+....            +.+..++.. ...............  +.+++++..+ ++...++
T Consensus        95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~png--i~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNG--LDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEE--EEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccc--eEEcCCCCEEEEecCCCC
Confidence               24678999999996554321            234444443 222211111112223  3447888755 5556678


Q ss_pred             eEEEEeC--CCcce-----eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         146 KMYKFDY--STGAE-----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       146 ~i~~~d~--~~~~~-----~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +|+.|+.  .++..     +..+..+...+..++++++|+++++....+.|..||..+|+.......
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            8999986  44432     233334456788999999999999988889999999999998777654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.02  E-value=9.1e-08  Score=79.33  Aligned_cols=190  Identities=17%  Similarity=0.193  Sum_probs=125.8

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA   82 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~   82 (231)
                      .+++|.+.|..+++.+.+......+ . +.++|+|+.+..+..-..     +..-+..+++|.+||..+.+.+..+..+.
T Consensus        57 ~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~-----r~~~G~~~~~VsviD~~t~~v~~~I~v~~  129 (386)
T 3sjl_D           57 AVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFS-----RIARGERTDYVEVFDPVTLLPTADIELPD  129 (386)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEE-----ETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEccccc-----ccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence            3678999999999999998865666 4 999999765432110000     00001246789999999999998887643


Q ss_pred             --------cceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          83 --------VPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        83 --------~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                              .+..++++||++.++++.   ++.+.++|..+.+.++++..+....   + .....+.+++.+.|+++...+
T Consensus       130 g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~---~-~P~g~~~~~~~~~DG~~~~v~  205 (386)
T 3sjl_D          130 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---I-FPTAPDTFFMHCRDGSLAKVA  205 (386)
T ss_dssp             CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---E-EEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce---e-ecCCCceeEEECCCCCEEEEE
Confidence                    688999999999988764   4689999999999988886654211   1 122344555667788888888


Q ss_pred             CCC-cceeeeccCC----CCCee-EEEEc-CCCCEEEEeeCCCcEEEEeCCCCC--eeeeee
Q psy6442         152 YST-GAEIESFKGH----FGPIH-CVKFS-PDGELYASGSEDGTLRLWQTNVGK--TYGLWK  204 (231)
Q Consensus       152 ~~~-~~~~~~~~~h----~~~V~-~v~~s-pd~~~laS~s~d~~v~iwd~~~~~--~~~~~~  204 (231)
                      +.+ +....+...+    ..++. ..+|. ++|+++. .+.+++|.+.|...++  ....|.
T Consensus       206 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          206 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             CCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred             CCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence            865 4432221111    12232 24664 6776544 5558999999997664  344454

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=8.2e-11  Score=97.48  Aligned_cols=179  Identities=15%  Similarity=0.050  Sum_probs=96.8

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.||+|+.|+..+|+.+-+++.  +.+.+..+.               .++..+++++.|++|+.||..+++.+......
T Consensus        16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~---------------~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A           16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH---------------VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             cCCCEEEEEECCCCCEEEEecC--CCceecceE---------------cCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            5688999999999998877765  333322222               23445777789999999999888876554332


Q ss_pred             C--cce-eEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          82 A--VPN-SLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        82 ~--~~~-~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      .  .+. +..+..++..++.+.++.+..||..+++.+..+..+...   .  ..|.+..+++++.++.++.||.++++.+
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~---~--~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD---S--LSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc---c--ccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            1  111 111112333333345678999999888877665443211   1  1336667888888999999999999877


Q ss_pred             eeccCCCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         159 ESFKGHFGPIHCVKFSPDG---ELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~---~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..+..+.  ....+++++.   ..+..++.|+.|..||..+|+.....+
T Consensus       154 W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            6654221  2223344432   456678899999999999998654433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.01  E-value=5.6e-08  Score=81.54  Aligned_cols=147  Identities=13%  Similarity=0.150  Sum_probs=94.1

Q ss_pred             CCEEEEEeCCC--CEEEEeCCCCCceEEE----E-eCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe----ee
Q psy6442          52 NTRLISCAEDK--TVRLWDVSASAEVQKL----E-FGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE----HK  119 (231)
Q Consensus        52 ~~~l~s~s~D~--ti~iwd~~~~~~~~~~----~-~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~----~~  119 (231)
                      ++.|+.+..++  .|.+++...+.....+    . ....+..++++|++..+++.. ++.|..+|.........    ..
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            44567777765  6888887665544444    1 234678999999555555543 46789999876543221    11


Q ss_pred             ccceeEEE-EEEecC-CCCEEEEecCCCeEEEEeCCCcceeeeccCC---------------CCCeeEEEEcCCCCEEEE
Q psy6442         120 VPAQVHSA-SLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFKGH---------------FGPIHCVKFSPDGELYAS  182 (231)
Q Consensus       120 ~~~~~~~~-~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h---------------~~~V~~v~~spd~~~laS  182 (231)
                      ........ .+.+++ ++.++++-....+|+.|+....  +..+.++               -.....++++|+|+++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            11111101 233467 4666777777889999987532  2233232               234789999999999998


Q ss_pred             ee-CCCcEEEEeCCCCCee
Q psy6442         183 GS-EDGTLRLWQTNVGKTY  200 (231)
Q Consensus       183 ~s-~d~~v~iwd~~~~~~~  200 (231)
                      -+ .++.|+.|+..+++..
T Consensus       340 d~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             ETTTTCEEEEEETTTTEEE
T ss_pred             eCCCCCEEEEEECCCCEEE
Confidence            88 8999999998787643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.01  E-value=3e-07  Score=80.22  Aligned_cols=201  Identities=13%  Similarity=0.116  Sum_probs=133.0

Q ss_pred             CcCCCceeeecc--CCCeEeeeecccccEEEEEEC----CCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce
Q psy6442           2 CVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDIN----KDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV   75 (231)
Q Consensus         2 ~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~----~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~   75 (231)
                      +.|+.|.++|..  +++.+.++....+ -..+.|+    |+|+++              +++.-.+++|.|+|..+.+.+
T Consensus       215 ~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l--------------~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          215 GRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYA--------------IAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEE--------------EEEEEETTEEEEEETTTCCEE
T ss_pred             cCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEE--------------EEEEccCCeEEEEECCCCcEE
Confidence            357889999985  8888888775444 3678888    576553              445556699999999999888


Q ss_pred             EEEEeCC------------cceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEe--eeccceeEEEEEEecCCCCEEE
Q psy6442          76 QKLEFGA------------VPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKE--HKVPAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        76 ~~~~~~~------------~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  139 (231)
                      ..+....            .+..+..++++..+++.  ..+.+.++|..+...+..  +......+..  .+++++++++
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~--~~~pdgr~~~  357 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG--GLDGSHRYFI  357 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE--EECTTSCEEE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc--eECCCCCEEE
Confidence            8776421            34567778887765554  357899999776543332  2222223333  3478888765


Q ss_pred             Ee-cCCCeEEEEeCCCcceeeeccC-----CCCCeeEEE-EcCC-CCEEEEee-CCCcEEEEeCCC-------CCeeeee
Q psy6442         140 CG-GEDLKMYKFDYSTGAEIESFKG-----HFGPIHCVK-FSPD-GELYASGS-EDGTLRLWQTNV-------GKTYGLW  203 (231)
Q Consensus       140 ~g-~~d~~i~~~d~~~~~~~~~~~~-----h~~~V~~v~-~spd-~~~laS~s-~d~~v~iwd~~~-------~~~~~~~  203 (231)
                      .+ ..+.+|.++|..+++.+..+.-     |.+  ..+. ++|+ +..+++.. .+++|.++|...       .+..+..
T Consensus       358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            54 4578899999999887765542     322  1222 6887 45556554 568999999988       5566666


Q ss_pred             eccCCcccCCCCCCccccc
Q psy6442         204 KCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~  222 (231)
                      +.- +.-+.+|...++++.
T Consensus       436 ~~~-g~g~~~i~~~p~~~~  453 (567)
T 1qks_A          436 PAL-GGGSLFIKTHPNSQY  453 (567)
T ss_dssp             ECS-CSCCCCEECCTTCSE
T ss_pred             ecC-CCCCEEEEeCCCCCe
Confidence            643 344566666666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.00  E-value=5.1e-07  Score=71.20  Aligned_cols=164  Identities=11%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP-AQVHS  126 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~  126 (231)
                      +..+++...++.|..+|.. ++. ..+..   ...+..+++.+++...++.. ++.+..++.. .+.. .+..+ .....
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~  148 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYP  148 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCE
T ss_pred             CCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCc
Confidence            3445555557889999987 544 33333   24678999999988766554 5688888876 3332 22222 11122


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..+..++++.+.++...++.|+.++. +++... .+..+...+..++++++++++++....+.|.+|+. +++... +..
T Consensus       149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~  225 (300)
T 2qc5_A          149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI  225 (300)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC
Confidence            23444778887777766788999998 554332 23344567899999999998888877888999998 555332 211


Q ss_pred             -cCCcccCCCCCCccccc
Q psy6442         206 -IEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       206 -~~~~~~~~~~~~~~~~~  222 (231)
                       .....+..|.++.+|++
T Consensus       226 ~~~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          226 PTPNARPHAITAGKNSEI  243 (300)
T ss_dssp             SSTTCCEEEEEECSTTCE
T ss_pred             CCCCCCceEEEECCCCCE
Confidence             11223345566666553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.99  E-value=1.3e-07  Score=75.38  Aligned_cols=134  Identities=10%  Similarity=0.159  Sum_probs=88.9

Q ss_pred             CCEEEEeCCCCCceEEEEeCCcceeEEEc----cCCCEEEEE--cCCeEEEEECC-CcceE--Ee-eeccce--eEEEEE
Q psy6442          62 KTVRLWDVSASAEVQKLEFGAVPNSLEIS----RDGTTITVT--HGSCVTFLDAN-SLELI--KE-HKVPAQ--VHSASL  129 (231)
Q Consensus        62 ~ti~iwd~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~--~~~~i~~~d~~-~~~~~--~~-~~~~~~--~~~~~~  129 (231)
                      +.|..+|.. ++..........+..++++    |++..++++  .++.+..|+.. +....  .. ...+..  .....+
T Consensus       153 ~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          153 GSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             CeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            456666655 4443333333456889999    998766655  35788888865 22211  11 111110  112234


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~  196 (231)
                      ..++++.+.++...++.|..||..+++.+..+..+...+.+++|+|+++ ++++...++.|..|++..
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            4578888888877788999999887776666666667899999999998 666667778999999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.99  E-value=9.7e-08  Score=85.38  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=115.1

Q ss_pred             CceeeeccCCC----eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC------CC-c
Q psy6442           6 KPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA------SA-E   74 (231)
Q Consensus         6 ~~~~~~~~~g~----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~------~~-~   74 (231)
                      +|++|+..+++    ++.....|...+..+.|+|+|+.++..+...          ...+..|.+||+.+      +. .
T Consensus       209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~----------~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG----------CDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS----------SSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc----------CCCccEEEEEECcccccccCCccc
Confidence            38899988776    3333344667788999999977654321100          00156899999876      43 3


Q ss_pred             eEEEEeCCcceeEEEccCCCEEEEE-cC----CeEEEEECCCcce--EEeeecc-c--eeEEEEEEecCCCCEEEEecCC
Q psy6442          75 VQKLEFGAVPNSLEISRDGTTITVT-HG----SCVTFLDANSLEL--IKEHKVP-A--QVHSASLLLNSERPIFVCGGED  144 (231)
Q Consensus        75 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~----~~i~~~d~~~~~~--~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~d  144 (231)
                      ...+..........++|++..+++. ..    ..+..++..+...  .+....+ .  .+....+  .+++.++++...+
T Consensus       279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~lv~~~~~~  356 (710)
T 2xdw_A          279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC--VRSNFLVLCYLHD  356 (710)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE--ETTTEEEEEEEET
T ss_pred             eEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE--EcCCEEEEEEEEC
Confidence            4444432222223578888876653 22    3688899876531  2222222 1  2333333  4567778888777


Q ss_pred             C--eEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEE-Ee---eCCCcEEEEeCCCCC
Q psy6442         145 L--KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYA-SG---SEDGTLRLWQTNVGK  198 (231)
Q Consensus       145 ~--~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~la-S~---s~d~~v~iwd~~~~~  198 (231)
                      +  +|++|++.+++.++.+..+.+.|..++++|++..++ +.   ...++|.+||+.+++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7  477788877777777877888899999999987554 32   346789999998887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=5.6e-08  Score=79.38  Aligned_cols=162  Identities=10%  Similarity=0.083  Sum_probs=102.5

Q ss_pred             CCCEEEEeCCCCCceEEEEeC-------CcceeEEEccCCCEEEEE-----cCCeEEEEECCCcceEEeeec-----c--
Q psy6442          61 DKTVRLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTITVT-----HGSCVTFLDANSLELIKEHKV-----P--  121 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~-----~--  121 (231)
                      +..|.+||+.+++.+..+.++       ..+..+++++++..++++     ....+.+||..+.+..+....     +  
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            578999999988877777653       235899999876666665     346888999876554443211     0  


Q ss_pred             ------c---------------eeEEEEEEecCCCCEEEEecCCC-eEEEEeCCC---cc-----eee--eccCCCCCee
Q psy6442         122 ------A---------------QVHSASLLLNSERPIFVCGGEDL-KMYKFDYST---GA-----EIE--SFKGHFGPIH  169 (231)
Q Consensus       122 ------~---------------~~~~~~~~~~~~~~~~~~g~~d~-~i~~~d~~~---~~-----~~~--~~~~h~~~V~  169 (231)
                            .               ......+.+++++..+..+...+ +++.++...   +.     ...  ...++.+...
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                  0               01122344578887777665544 677766421   10     011  1124555677


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         170 CVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       170 ~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      .++++++|+++++...++.|.+||..+|+.....+.-....+..++++++|++
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l  304 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYL  304 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCE
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcE
Confidence            89999999999999999999999986676433333211334566677666653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.98  E-value=4.5e-07  Score=71.49  Aligned_cols=181  Identities=10%  Similarity=0.121  Sum_probs=116.3

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEE
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTIT   97 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~   97 (231)
                      +..+...+.++.+.++|+               .+++...++.|.+||.. ++. ..+..   ...+..+++.+++...+
T Consensus        10 ~~~~~~~~~~i~~d~~g~---------------l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGK---------------VWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             CCSSSCCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCcCCCccceEECCCCC---------------EEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEE
Confidence            344556788898888754               34555557889999987 543 33332   24678999999998766


Q ss_pred             EEc-CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEc
Q psy6442          98 VTH-GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFS  174 (231)
Q Consensus        98 ~~~-~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~s  174 (231)
                      +.. ++.+..++... . ...+..+ .......+..++++.+.++...++.|..||. +++... .+..+...+..++++
T Consensus        73 ~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           73 TENAANKIGRITKKG-I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             EETTTTEEEEECTTS-C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             eCCCCCeEEEECCCC-c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            655 56888888752 2 2333322 1112223444778888887777889999998 544332 233345678999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         175 PDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       175 pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      |+++++++...++.|..||. +++....-.......+..+.++.+|++
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l  196 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL  196 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE
Confidence            99999988888899999998 666543211111223445566666553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.98  E-value=9.9e-07  Score=69.53  Aligned_cols=165  Identities=8%  Similarity=0.107  Sum_probs=103.8

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe---CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHS  126 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~  126 (231)
                      +..+++...++.|..+|.. ++.. .+..   ...+..+++.+++...+... .+.+..++. +..... +..+. ....
T Consensus       115 g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~  190 (300)
T 2qc5_A          115 GDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAP  190 (300)
T ss_dssp             TCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred             CCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCc
Confidence            4445555557788889886 4433 2322   24678999999998554443 568888887 333332 22221 1112


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ..+..++++.+.++....+.|..++. ++.... .+..+...+.+++++|+|+++++...++.|..|+. +++.. .+..
T Consensus       191 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~  267 (300)
T 2qc5_A          191 VGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL  267 (300)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC
T ss_pred             ceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC
Confidence            23444778887777767788999998 444332 23445567899999999998888877899999998 45433 2321


Q ss_pred             c-CCcccCCCCCCcccccc
Q psy6442         206 I-EGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       206 ~-~~~~~~~~~~~~~~~~~  223 (231)
                      - ....+..|.++.+|+++
T Consensus       268 ~~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          268 QTENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             CSTTCCCCCEEECTTSCEE
T ss_pred             CccCCccceeEeCCCCCEE
Confidence            1 22345666677666643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.96  E-value=4.6e-08  Score=87.29  Aligned_cols=178  Identities=12%  Similarity=-0.027  Sum_probs=110.3

Q ss_pred             ceeeeccCCC----eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC----CEEEEeCCCCCceEEE
Q psy6442           7 PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK----TVRLWDVSASAEVQKL   78 (231)
Q Consensus         7 ~~~~~~~~g~----~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~----ti~iwd~~~~~~~~~~   78 (231)
                      |++|+..+++    ++....+|...+..+.|+|+|+.+               +..+.++    .|.+|+..++......
T Consensus       204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l---------------~~~~~~~~~~~~l~~~~~~~~~~~~l~  268 (695)
T 2bkl_A          204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL---------------FVYILRGWSENDVYWKRPGEKDFRLLV  268 (695)
T ss_dssp             EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE---------------EEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred             EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE---------------EEEEeCCCCceEEEEEcCCCCceEEee
Confidence            8999988776    555556677789999999987654               3333333    5666766555443333


Q ss_pred             EeCCcceeEEEccCCCEEEEEc----CCeEEEEECCCcce--EEe-eec--cceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          79 EFGAVPNSLEISRDGTTITVTH----GSCVTFLDANSLEL--IKE-HKV--PAQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        79 ~~~~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~--~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ..........+ +++..++.+.    ...|..||..+...  ... ...  ...+....+  . ++.++++...++..++
T Consensus       269 ~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~--~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI--V-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE--E-TTEEEEEEEETTEEEE
T ss_pred             cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE--E-CCEEEEEEEECCEEEE
Confidence            33334444445 5666333333    35788899866532  122 211  122333333  4 5667888888887666


Q ss_pred             EeCC-CcceeeeccCC-CCCeeEEEEcCCCCEEE----EeeCCCcEEEEeCCCCCeeeeee
Q psy6442         150 FDYS-TGAEIESFKGH-FGPIHCVKFSPDGELYA----SGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       150 ~d~~-~~~~~~~~~~h-~~~V~~v~~spd~~~la----S~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      |... .+..+..+..+ .+.|..++++|++..++    +....++|.+||+.+++. .+++
T Consensus       345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~  404 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWA  404 (695)
T ss_dssp             EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEE
T ss_pred             EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence            5443 35556666555 67788899999997666    444568899999998874 3444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=2.7e-07  Score=71.47  Aligned_cols=168  Identities=15%  Similarity=0.080  Sum_probs=120.7

Q ss_pred             CeEeeeeccccc--EEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCcceeEEEcc
Q psy6442          16 DWIGTFEGHKGC--VWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISR   91 (231)
Q Consensus        16 ~~i~~l~gH~~~--V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~~~~v~~~~   91 (231)
                      +.++++ .|...  +..+.|++                +..+.|.+.+|  +|+..|+.+++.+..+.++..+....+.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~----------------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~   72 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR----------------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA   72 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET----------------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE
T ss_pred             EEEEEc-CCCCccccccEEEEC----------------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE
Confidence            456666 56543  44666654                22356666654  89999999999999998887776666666


Q ss_pred             CCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CC--
Q psy6442          92 DGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HF--  165 (231)
Q Consensus        92 ~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~--  165 (231)
                      .+..+++..  ++.+.++|..+.+.+.++..+..-..++    +++..+.....+.+|+++|..+.+.+.+++-  +.  
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt----~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT----SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE----ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe----eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence            667666553  6899999999999999887765332222    2344455555688999999999887776543  21  


Q ss_pred             -CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         166 -GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       166 -~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                       ..++.+.+. +|++++..-.+..|.+-|..+|+....+..
T Consensus       149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred             cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence             345667765 777887777788999999999999888763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=9.5e-08  Score=74.82  Aligned_cols=148  Identities=9%  Similarity=-0.008  Sum_probs=112.2

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      +..+.+.+.++.|+++|+.+++.+..+ ++..+....+.+++..+++.  .++.+.++|..+.+.++++..+.....++ 
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt-  142 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC-  142 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE-
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe-
Confidence            445778888899999999999999998 87777665555566666554  37899999999999999887754322222 


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--CC---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--HF---GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~---~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                         +++..++....+.+|+.+|..+.+.+.+++-  +.   ..++.+.|. +|++++..-.++.|.+-|..+|+....++
T Consensus       143 ---~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          143 ---YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             ---EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             ---cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence               3455566666688999999999887776542  22   245677887 78888877788999999999999988776


Q ss_pred             c
Q psy6442         205 C  205 (231)
Q Consensus       205 ~  205 (231)
                      .
T Consensus       219 l  219 (268)
T 3nok_A          219 A  219 (268)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.93  E-value=3.9e-07  Score=71.75  Aligned_cols=171  Identities=12%  Similarity=0.079  Sum_probs=120.9

Q ss_pred             CCCeEeeeeccccc--EEEEEECCCCceeEeccccccccCCCEEEEEeC--CCCEEEEeCCCCCceEEEEeCCcceeEEE
Q psy6442          14 TGDWIGTFEGHKGC--VWGVDINKDASKAASGAADFQAKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFGAVPNSLEI   89 (231)
Q Consensus        14 ~g~~i~~l~gH~~~--V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~--D~ti~iwd~~~~~~~~~~~~~~~~~~v~~   89 (231)
                      +.+.++++. |...  ...+.|++++.               .+++.+.  +++|.+.|+.+++.+..+..+..+....+
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~---------------Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi   71 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDT---------------LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL   71 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTE---------------EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCe---------------EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE
Confidence            355677764 5543  56888887632               2344443  57999999999999998887665554445


Q ss_pred             ccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC--C
Q psy6442          90 SRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG--H  164 (231)
Q Consensus        90 ~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~--h  164 (231)
                      ..++..+++..  ++.+.++|..+.+.+.++..+ ..-  ..+  .+++..+..+..+.+++++|..+.+.+..+.-  +
T Consensus        72 ~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A           72 TLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             EEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC
Confidence            55566666653  679999999999888887654 222  222  33455455555688999999998887766542  1


Q ss_pred             ---CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         165 ---FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       165 ---~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                         ...++.+.|. ++.++++...++.|.+-|..+++..+.+..
T Consensus       148 ~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          148 GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence               1246788888 787888877889999999999999888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.91  E-value=1.8e-07  Score=73.11  Aligned_cols=149  Identities=12%  Similarity=0.118  Sum_probs=112.5

Q ss_pred             CCEEEEEeCCC--CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEE
Q psy6442          52 NTRLISCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSA  127 (231)
Q Consensus        52 ~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~  127 (231)
                      +..+.+.+.+|  +|+++|+.+++.+..+.++..+....+.+++..+++..  ++.+.++|..+.+.++++..+..-..+
T Consensus        53 ~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl  132 (262)
T 3nol_A           53 GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL  132 (262)
T ss_dssp             TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE
T ss_pred             CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE
Confidence            34466777776  89999999999999998887776665666667776654  679999999999999988775432222


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC--C---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH--F---GPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h--~---~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +    +++..+.....+.+|+.+|..+.+.+.+++-.  .   ..++.+.|. +|++++..-.++.|.+.|..+|+....
T Consensus       133 t----~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          133 T----HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             E----ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred             e----cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            2    34555555556788999999988877765421  1   335668886 788888887899999999999999888


Q ss_pred             eec
Q psy6442         203 WKC  205 (231)
Q Consensus       203 ~~~  205 (231)
                      ++.
T Consensus       208 Id~  210 (262)
T 3nol_A          208 IDL  210 (262)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.88  E-value=1.2e-06  Score=70.97  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=103.3

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC---
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG---   81 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~---   81 (231)
                      +.|..|+..+++.. .+. +...+.++.++++++               .+++ ..+ .|.+||..+++........   
T Consensus        71 ~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~---------------l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~  131 (326)
T 2ghs_A           71 RELHELHLASGRKT-VHA-LPFMGSALAKISDSK---------------QLIA-SDD-GLFLRDTATGVLTLHAELESDL  131 (326)
T ss_dssp             TEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE---------------EEEE-ETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             CEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCe---------------EEEE-ECC-CEEEEECCCCcEEEEeeCCCCC
Confidence            44555555444322 222 234566666665543               3343 333 4889998877654332221   


Q ss_pred             --CcceeEEEccCCCEEEEEcC-------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE-EecCCCeEEEEe
Q psy6442          82 --AVPNSLEISRDGTTITVTHG-------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV-CGGEDLKMYKFD  151 (231)
Q Consensus        82 --~~~~~v~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~~~d  151 (231)
                        ..++.++++|+++..+...+       +.+..++  +.+............  .+.+++++..+. +...++.|++|+
T Consensus       132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~--~i~~s~dg~~lyv~~~~~~~I~~~d  207 (326)
T 2ghs_A          132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPN--SICFSPDGTTGYFVDTKVNRLMRVP  207 (326)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEE--EEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccC--CeEEcCCCCEEEEEECCCCEEEEEE
Confidence              24678999999986554421       3555566  332222111111122  233478887554 445578899999


Q ss_pred             CC--Cc-c-----eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         152 YS--TG-A-----EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       152 ~~--~~-~-----~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..  ++ .     ....+......+..++++++|+++++...++.|.+|+. +++....+.
T Consensus       208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             cccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            75  55 3     12233334456788999999998888877888999998 577665554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.88  E-value=7.2e-07  Score=71.40  Aligned_cols=185  Identities=15%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             EeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEE
Q psy6442          18 IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT   97 (231)
Q Consensus        18 i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   97 (231)
                      +..+..+........|+++++.              .+++...++.|..|+. +++..........+..++++++++.++
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~--------------l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v  101 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRT--------------LVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVH  101 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTE--------------EEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCE--------------EEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEE
Confidence            3444444455566777776543              3567777889999998 444322223345678999999999766


Q ss_pred             EEcC-CeEEEEECCCcceEEeee-cc-c---eeEEEEEEecCCCCEEEE----ecC-------------CCeEEEEeCCC
Q psy6442          98 VTHG-SCVTFLDANSLELIKEHK-VP-A---QVHSASLLLNSERPIFVC----GGE-------------DLKMYKFDYST  154 (231)
Q Consensus        98 ~~~~-~~i~~~d~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~----g~~-------------d~~i~~~d~~~  154 (231)
                      +... +.+..++.. ........ .. .   .+..  +..++++.+.++    |..             .+.|+.+|..+
T Consensus       102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~--i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPND--LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECEETTEECSCCCC--EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCC--EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            6554 688888875 33221111 11 1   1122  334788887775    331             35688888866


Q ss_pred             cceeeeccCCCCCeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCe--eeeeeccCCcccCCCCCCccccc
Q psy6442         155 GAEIESFKGHFGPIHCVKFSPDGELYASGSED------GTLRLWQTNVGKT--YGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       155 ~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d------~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ++.....  .....+.++|+||++.|..+...      +.|.+|++..+..  ...+.......+.-+.++.+|++
T Consensus       179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l  252 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL  252 (305)
T ss_dssp             CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred             CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence            6543322  34567889999999866665544      7899999875431  12232223445556667766654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.87  E-value=1.7e-07  Score=84.17  Aligned_cols=210  Identities=11%  Similarity=0.004  Sum_probs=115.8

Q ss_pred             CCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE--EeCC
Q psy6442           5 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL--EFGA   82 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~--~~~~   82 (231)
                      .++++|+..+|+.+.. ..+...+..+.|+|| +.++.+..+.... +..+........|++|++.++.....+  ....
T Consensus       189 ~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~-~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKE-GQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             EEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccc-ccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence            4689999998887653 222233357789998 7765544322110 001111112345889999876542222  2221


Q ss_pred             ---cceeEEEccCCCEEEEEc------CCeEEEEECCCc--ceEEeeeccceeEEEEEEecCCCCEEEEecC----CCeE
Q psy6442          83 ---VPNSLEISRDGTTITVTH------GSCVTFLDANSL--ELIKEHKVPAQVHSASLLLNSERPIFVCGGE----DLKM  147 (231)
Q Consensus        83 ---~~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----d~~i  147 (231)
                         ....+.++||++.++...      ...+.++|..+.  ........+.......+  .+++..++..+.    ...|
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~--~~dg~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV--DGVGDQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE--EEETTEEEEEECTTCTTCEE
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE--eccCCEEEEEECCCCCCCEE
Confidence               367889999999766532      237888887654  21222222221111122  245665555443    4569


Q ss_pred             EEEeCCCc--ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCCeeeeeeccCCcccCCCCCCccc
Q psy6442         148 YKFDYSTG--AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN-VGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       148 ~~~d~~~~--~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                      +.||+.++  .....+..+...+.+++++ ++.++++...|+..+||... .++.......-.......+++++++
T Consensus       344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~  418 (741)
T 1yr2_A          344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD  418 (741)
T ss_dssp             EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC
T ss_pred             EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC
Confidence            99998774  2233344555567778887 56788999999988888654 4544333332112333344444444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.83  E-value=8.5e-10  Score=91.36  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccce-eEEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQ-VHSAS  128 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~  128 (231)
                      ++..|++++.|+.|+.||..+++.+..... ..+.+..+..++..+++ +.++.+..||..+.+.+.......+ .....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            467899999999999999999999877776 44444445566655555 4678899999877766544332211 00000


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      .... .+..+++++.++.++.||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||.++|+....
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            0001 23356677889999999999999888876554    245678888999999999999999999986433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.81  E-value=2.6e-07  Score=76.77  Aligned_cols=136  Identities=12%  Similarity=0.081  Sum_probs=96.5

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEcC
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHG  101 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  101 (231)
                      .+.+ |..+.|  +               +..|+++ .++.|++||+.+........ +...+.++.+.+.. .+++..+
T Consensus        86 ~lp~-V~~l~f--d---------------~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~d  145 (388)
T 1xip_A           86 EIPD-VIFVCF--H---------------GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSV  145 (388)
T ss_dssp             ECTT-EEEEEE--E---------------TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETT
T ss_pred             eCCC-eeEEEE--C---------------CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECC
Confidence            4566 888888  4               3456777 88999999998776544443 34456676666543 5556788


Q ss_pred             CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce--eeec------c---CCCCCeeE
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--IESF------K---GHFGPIHC  170 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~~~~------~---~h~~~V~~  170 (231)
                      +.+.+||+.+.....   ....+.+++|  +|++  ++.|..|+++++|+....+.  ..++      .   +|...|.+
T Consensus       146 G~L~v~dl~~~~~~~---~~~~Vs~v~W--SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~s  218 (388)
T 1xip_A          146 NDLSALDLRTKSTKQ---LAQNVTSFDV--TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLS  218 (388)
T ss_dssp             SEEEEEETTTCCEEE---EEESEEEEEE--CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEE
T ss_pred             CCEEEEEccCCcccc---ccCCceEEEE--cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEE
Confidence            999999998766543   2234555555  8888  67788899999997766553  3444      2   47888999


Q ss_pred             EEEcCCCCEEEEeeC
Q psy6442         171 VKFSPDGELYASGSE  185 (231)
Q Consensus       171 v~~spd~~~laS~s~  185 (231)
                      |.|.+++.++++-..
T Consensus       219 I~wl~~~~flv~y~~  233 (388)
T 1xip_A          219 VTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEESSSSEEEEEEEC
T ss_pred             EEEecCCeEEEEEcC
Confidence            999999999888543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.79  E-value=6.7e-07  Score=80.40  Aligned_cols=163  Identities=9%  Similarity=-0.021  Sum_probs=97.1

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cC
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG  101 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~  101 (231)
                      +|...+..+.|+|||++++.+..+.          ++...+|++||+.+++.+...........++|+|| +.++.+ .+
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~----------G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~  228 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDG----------GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFA  228 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEET----------TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCC----------CCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEec
Confidence            3444678889999977654322100          00014699999999887543221222357899999 876654 32


Q ss_pred             C--------------eEEEEECCCcce--EEeeeccc-eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc-e-
Q psy6442         102 S--------------CVTFLDANSLEL--IKEHKVPA-QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA-E-  157 (231)
Q Consensus       102 ~--------------~i~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~-~-  157 (231)
                      .              .+.+|+..+...  ...+..+. +.......++++++.++....+     ..|++||+.++. . 
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence            2              377888765442  12222221 1112334458999887766543     489999987762 2 


Q ss_pred             eeeccCCCCCeeEEEEcCCCCEEEEeeCC----CcEEEEeCCCC
Q psy6442         158 IESFKGHFGPIHCVKFSPDGELYASGSED----GTLRLWQTNVG  197 (231)
Q Consensus       158 ~~~~~~h~~~V~~v~~spd~~~laS~s~d----~~v~iwd~~~~  197 (231)
                      ...+..+...+... ++|+|..|+..+.+    +.|.+||+.++
T Consensus       309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            44555555555554 35899888777754    44999998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.78  E-value=1.8e-06  Score=68.80  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=103.7

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc---ceeEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP---AQVHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~  129 (231)
                      ..+++...+++|..||..+++. ..+.....+..+++++++..++ +....+..+|..+.+........   .......+
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di  103 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDG  103 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCE
Confidence            3466667788999999987664 4556677889999999999544 44678889998765543222211   11122234


Q ss_pred             EecCCCCEEEEec-----------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeC--C
Q psy6442         130 LLNSERPIFVCGG-----------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQT--N  195 (231)
Q Consensus       130 ~~~~~~~~~~~g~-----------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~--~  195 (231)
                      ..++++.+.++..           ..+.|+.++.. +.. ..+..+....+.++|+||++.| ++.+.++.|.+|++  .
T Consensus       104 ~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~  181 (297)
T 3g4e_A          104 KVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ  181 (297)
T ss_dssp             EECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred             EECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence            4488888766542           23466667653 332 2223344557899999999854 66677899999986  5


Q ss_pred             CCCee--eeeeccC--CcccCCCCCCcccccc
Q psy6442         196 VGKTY--GLWKCIE--GGLNNSLGLDSSGHLN  223 (231)
Q Consensus       196 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~  223 (231)
                      +|+..  ..+....  +..+.-+.++.+|++|
T Consensus       182 ~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw  213 (297)
T 3g4e_A          182 TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW  213 (297)
T ss_dssp             TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred             CCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence            66532  2222211  2344556677776554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.75  E-value=1.8e-06  Score=72.38  Aligned_cols=142  Identities=13%  Similarity=0.060  Sum_probs=90.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-C--eEEEEECCCcceEEee----e-ccce
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-S--CVTFLDANSLELIKEH----K-VPAQ  123 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~--~i~~~d~~~~~~~~~~----~-~~~~  123 (231)
                      +..+++...++.|++||..++...........+. +++++++..+++... +  .+..++.......+..    . ....
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~  220 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGK  220 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSC
T ss_pred             CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCC
Confidence            3345555567899999998776654444444455 999999998877653 3  7888887654433222    1 1112


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee----ccCCCCCe--eEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES----FKGHFGPI--HCVKFSP-DGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~----~~~h~~~V--~~v~~sp-d~~~laS~s~d~~v~iwd~~~  196 (231)
                      ...+  ..+++...+.....+++|+.||..++.....    ..++...-  +.++|+| ++.++++-..++.|+.|+...
T Consensus       221 p~~i--av~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          221 IGAV--ALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             CCBC--EECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             cEEE--EEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            2333  3377333444466688999999876653221    22333222  3999999 577888888899999999754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.75  E-value=9.6e-07  Score=78.83  Aligned_cols=188  Identities=7%  Similarity=0.007  Sum_probs=104.4

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eC
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FG   81 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~   81 (231)
                      ..+|++++..+|+.+.. .-+..+...+.|+ |++.++....+..  .+..+........|++|++.+......+.  ..
T Consensus       154 ~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~--~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~  229 (693)
T 3iuj_A          154 WREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKP--DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI  229 (693)
T ss_dssp             EEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCC--C-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred             eEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCc--ccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence            35788899888886543 1111112456788 7665544433211  00111111122459999998765432222  22


Q ss_pred             C----cceeEEEccCCCEEEEEc-----CCeEEEEECCCcc-eEEeeeccceeEEEEEEecCCCCEEEEecC---CCeEE
Q psy6442          82 A----VPNSLEISRDGTTITVTH-----GSCVTFLDANSLE-LIKEHKVPAQVHSASLLLNSERPIFVCGGE---DLKMY  148 (231)
Q Consensus        82 ~----~~~~v~~~~~~~~~~~~~-----~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~  148 (231)
                      .    ....+.++||++.+++..     .+.+.++|..+.. .......+.......+. +.++.+++....   ..+|+
T Consensus       230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~g~~l~~~t~~~~~~~~l~  308 (693)
T 3iuj_A          230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVD-NKGSTLYLLTNRDAPNRRLV  308 (693)
T ss_dssp             GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEE
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEe-ccCCEEEEEECCCCCCCEEE
Confidence            2    246789999999876532     2478889976553 22232222221111121 223444444443   36899


Q ss_pred             EEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEeeCCC---cEEEEeCCCCC
Q psy6442         149 KFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGSEDG---TLRLWQTNVGK  198 (231)
Q Consensus       149 ~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s~d~---~v~iwd~~~~~  198 (231)
                      .+|+.++..  ...+..|...+.  .|+|+++.|+....++   .|++|++..+.
T Consensus       309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence            999977643  345555666555  8999998877766544   68899987543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.72  E-value=2.3e-06  Score=70.82  Aligned_cols=132  Identities=13%  Similarity=0.140  Sum_probs=98.7

Q ss_pred             CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcceEEeeecc-c-e----eE
Q psy6442          63 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLELIKEHKVP-A-Q----VH  125 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~-~-~----~~  125 (231)
                      +|.++|..+++.+..+..+..+ .++++||++.++++.           ++.+.++|..+.+.+.....+ . .    ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            8899999999888888777667 999999999998874           467899999888777766543 0 0    11


Q ss_pred             EEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeee-ccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         126 SASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~-~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ...+.++|+++.++.++.  +..|.++| .+++.+.+ +..- .   ++.+.|++ +.+++.+.||.+.+++. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            123445899998888764  47899999 99888777 5421 1   24566765 56777889999999999 887663

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.71  E-value=2.8e-06  Score=68.72  Aligned_cols=166  Identities=12%  Similarity=0.089  Sum_probs=101.8

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc--c-eeEEEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP--A-QVHSASL  129 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~-~~~~~~~  129 (231)
                      ..+++...++.|..||..+++. ..+.....+..+++++++..++.. ...+..+|..+.+.......+  . ......+
T Consensus        62 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i  139 (326)
T 2ghs_A           62 TAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDG  139 (326)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCE
Confidence            3466666788999999987654 344556678899999999876665 445888998766543222211  1 1122234


Q ss_pred             EecCCCCEEEEecC------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCC--CC-Ce
Q psy6442         130 LLNSERPIFVCGGE------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTN--VG-KT  199 (231)
Q Consensus       130 ~~~~~~~~~~~g~~------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~--~~-~~  199 (231)
                      ..++++.+.++...      .+.|+.++  +++. ..+..+....+.++|+||++.| ++.+.++.|.+|++.  +| +.
T Consensus       140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~  216 (326)
T 2ghs_A          140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  216 (326)
T ss_dssp             EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence            45788887665432      35677777  4443 2332334467899999999855 555667899999985  56 32


Q ss_pred             e--eeeecc--CCcccCCCCCCcccccc
Q psy6442         200 Y--GLWKCI--EGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       200 ~--~~~~~~--~~~~~~~~~~~~~~~~~  223 (231)
                      .  ..+...  ....+..+.++.+|+.|
T Consensus       217 ~~~~~~~~~~~~~~~p~gi~~d~~G~lw  244 (326)
T 2ghs_A          217 GKAEVFIDSTGIKGGMDGSVCDAEGHIW  244 (326)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             cCceEEEECCCCCCCCCeeEECCCCCEE
Confidence            1  122211  12344456666666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.70  E-value=1.1e-06  Score=72.85  Aligned_cols=146  Identities=14%  Similarity=0.086  Sum_probs=106.0

Q ss_pred             CCCEEEEEeC-----CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcce
Q psy6442          51 NNTRLISCAE-----DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLEL  114 (231)
Q Consensus        51 ~~~~l~s~s~-----D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~  114 (231)
                      ++.+++.+..     +++|.+.|..+++.+..+..+..+. ++++||++.++++.           ++.+.+||..+.+.
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v  121 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP  121 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence            4555665554     6799999999999999998877775 99999999888764           35799999999988


Q ss_pred             EEeeeccc-e-----eEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         115 IKEHKVPA-Q-----VHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       115 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      +.++..+. +     .....+.++++++.+..++.  +..|.++|+.+++.+.++.--.  . ...+....+.+++.+.|
T Consensus       122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETT
T ss_pred             EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCC
Confidence            88775532 0     01112344889998877763  6789999999999888774211  1 22333345677788889


Q ss_pred             CcEEEEeCCC-CCee
Q psy6442         187 GTLRLWQTNV-GKTY  200 (231)
Q Consensus       187 ~~v~iwd~~~-~~~~  200 (231)
                      |.+-+.++.. ++..
T Consensus       199 G~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPE  213 (386)
T ss_dssp             SCEEEEECCSSSCCE
T ss_pred             CCEEEEECCCCCeEE
Confidence            9998888876 6653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.69  E-value=2e-06  Score=76.84  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++.|+.||+.+++.+.+++.+ .++..-.++..+.++..++.|+.++.||.++|+.....+.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            377999999999988877644 3445556777888999999999999999999997655554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.68  E-value=5.3e-06  Score=69.75  Aligned_cols=142  Identities=13%  Similarity=0.105  Sum_probs=97.2

Q ss_pred             EEEEEeCC------CCEEEEeCCCCCceEEEEeC----CcceeEEEccCCCEEEEEc--------------------CCe
Q psy6442          54 RLISCAED------KTVRLWDVSASAEVQKLEFG----AVPNSLEISRDGTTITVTH--------------------GSC  103 (231)
Q Consensus        54 ~l~s~s~D------~ti~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~--------------------~~~  103 (231)
                      .++++..+      +.|.+.|..+++.+.++..+    ...+.+.++|+++.++++.                    ++.
T Consensus       150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            45555554      78999999999988887654    2345788999999888874                    679


Q ss_pred             EEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecC------CCeEEEEeCCCcce--eee-------ccC--
Q psy6442         104 VTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGE------DLKMYKFDYSTGAE--IES-------FKG--  163 (231)
Q Consensus       104 i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~------d~~i~~~d~~~~~~--~~~-------~~~--  163 (231)
                      |.+||..+.+.++++...   .....+.+.++|+++.+..+++      +.+|.+|....+..  ++.       ..+  
T Consensus       230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence            999999988777777764   1222334556899988776664      45776654433321  111       000  


Q ss_pred             ---------CCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCC
Q psy6442         164 ---------HFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTN  195 (231)
Q Consensus       164 ---------h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~  195 (231)
                               -...+..+.+||||++| +|.-..+.|.+||+.
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                     02347889999999865 555568899999986

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=4e-06  Score=65.66  Aligned_cols=161  Identities=10%  Similarity=0.134  Sum_probs=106.0

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG   81 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~   81 (231)
                      +.+|+|+..|..+|+.++++ -. ...+.....+++              +...+..-.++.+.++|..+.+.+.++...
T Consensus        72 G~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--------------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           72 GHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--------------ERLYQLTWTEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             TTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--------------SCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--------------CEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence            45677888888888877765 21 222221112222              233444556789999999999999998876


Q ss_pred             CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          82 AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSASLLLNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                      .....++  +++..++++. .+.+.++|..+.+.++++....   +   .+.+.+  . ++.+.+..-.+..|.+.|.++
T Consensus       136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--A-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--E-TTEEEEEETTCSEEEEECTTT
T ss_pred             CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--e-CCEEEEEECCCCeEEEEeCCC
Confidence            5544444  6778888876 5789999999988887765422   1   222333  2 566665555677899999999


Q ss_pred             cceeeeccCC-------------CCCeeEEEEcCCCC-EEEEe
Q psy6442         155 GAEIESFKGH-------------FGPIHCVKFSPDGE-LYASG  183 (231)
Q Consensus       155 ~~~~~~~~~h-------------~~~V~~v~~spd~~-~laS~  183 (231)
                      ++.+..+.-.             ..-.+.+||+|+++ +++||
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9876654321             13568999999754 55554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=7.5e-06  Score=64.42  Aligned_cols=140  Identities=9%  Similarity=0.133  Sum_probs=100.7

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSA  127 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~  127 (231)
                      .++.-.++++.++|..+.+.+.++..+ ......+++|+..++++. ++.+.++|..+.+.++.+....   +   .+.+
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL  157 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence            344445789999999999998888776 334455677888777765 4689999999988877765431   1   2333


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-------------CCCeeEEEEcCCCC-EEEEeeCCCcEEEEe
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-------------FGPIHCVKFSPDGE-LYASGSEDGTLRLWQ  193 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-------------~~~V~~v~~spd~~-~laS~s~d~~v~iwd  193 (231)
                      .+  . ++.+.+....+..|.+.|..+++.+..+.-.             ....+.++|+|+++ +++++...+.+...+
T Consensus       158 e~--~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          158 EY--I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EE--E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EE--E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            33  3 4555555556789999999999877766421             13568999999975 778888899998888


Q ss_pred             CCCCC
Q psy6442         194 TNVGK  198 (231)
Q Consensus       194 ~~~~~  198 (231)
                      +...+
T Consensus       235 l~~~~  239 (266)
T 2iwa_A          235 LHLVR  239 (266)
T ss_dssp             EEECC
T ss_pred             Eeccc
Confidence            76543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.65  E-value=1.2e-05  Score=64.21  Aligned_cols=192  Identities=13%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eC-
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FG-   81 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~-   81 (231)
                      ++.++.|+. +|+ +..+..+.+.+..+.++++|+               .+++...++.|.+|+.. ++...... .. 
T Consensus        66 ~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~---------------l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~  127 (305)
T 3dr2_A           66 GRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR---------------LVHCEHGRRAITRSDAD-GQAHLLVGRYAG  127 (305)
T ss_dssp             TTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC---------------EEEEETTTTEEEEECTT-SCEEEEECEETT
T ss_pred             CCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC---------------EEEEECCCCEEEEECCC-CCEEEEEeccCC
Confidence            345556654 344 344555556667777776643               23443445778888875 44322221 11 


Q ss_pred             ---CcceeEEEccCCCEEEEE----c--------------CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442          82 ---AVPNSLEISRDGTTITVT----H--------------GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        82 ---~~~~~v~~~~~~~~~~~~----~--------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (231)
                         ..++.+++.|++...+..    .              .+.+..++..+.+........ ....  +.+++++..+..
T Consensus       128 ~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~p~g--l~~spdg~~lyv  204 (305)
T 3dr2_A          128 KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLD-HPNG--LAFSPDEQTLYV  204 (305)
T ss_dssp             EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEES-SEEE--EEECTTSSEEEE
T ss_pred             CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCC-CCcc--eEEcCCCCEEEE
Confidence               246789999999866531    1              245667776544433222111 2222  344888886666


Q ss_pred             ecCC------CeEEEEeCCCccee--eec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCccc
Q psy6442         141 GGED------LKMYKFDYSTGAEI--ESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLN  211 (231)
Q Consensus       141 g~~d------~~i~~~d~~~~~~~--~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~  211 (231)
                      +...      ..|+.|++..+...  ..+ ....+.+..++++++|+++++. .++ |.+|+. .++.......-.  .+
T Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~--~~  279 (305)
T 3dr2_A          205 SQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPG--TA  279 (305)
T ss_dssp             EECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSS--CC
T ss_pred             EecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCC--ce
Confidence            5544      68999998654311  111 1123456779999999976655 444 999998 577666665322  24


Q ss_pred             CCCCCCcccc
Q psy6442         212 NSLGLDSSGH  221 (231)
Q Consensus       212 ~~~~~~~~~~  221 (231)
                      ..+.+.++++
T Consensus       280 ~~~~f~~d~~  289 (305)
T 3dr2_A          280 SNCTFDQAQQ  289 (305)
T ss_dssp             CEEEECTTSC
T ss_pred             eEEEEeCCCC
Confidence            4445544443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=4.4e-06  Score=74.43  Aligned_cols=142  Identities=13%  Similarity=0.132  Sum_probs=95.2

Q ss_pred             CEEEEeCCCCCceEEEEeCC----------cceeEEEccCC---CEEEE-EcCCeEEEEECCCcceEEeeeccc-e----
Q psy6442          63 TVRLWDVSASAEVQKLEFGA----------VPNSLEISRDG---TTITV-THGSCVTFLDANSLELIKEHKVPA-Q----  123 (231)
Q Consensus        63 ti~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~---~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~----  123 (231)
                      +|..+|..+++.+-..+...          .+..+....++   ..++. ..++.+..+|..+.+.+...+... .    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            58899999998887766421          22333333466   33443 356899999999988876654321 0    


Q ss_pred             -------eE-----------E-----------EEEEecCCCCEEEEecC-------------------------------
Q psy6442         124 -------VH-----------S-----------ASLLLNSERPIFVCGGE-------------------------------  143 (231)
Q Consensus       124 -------~~-----------~-----------~~~~~~~~~~~~~~g~~-------------------------------  143 (231)
                             +.           .           ....++|+..++.....                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                   00           0           01223566555554321                               


Q ss_pred             ------------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 ------------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 ------------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                                  .+.|..||+.+++.+.+++ +..++....+++++.++..++.|+.+++||..+|+.....+.
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence                        2679999999999887775 445666667888888888899999999999999998766553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=8.2e-06  Score=63.79  Aligned_cols=158  Identities=12%  Similarity=0.186  Sum_probs=102.6

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEE-eCCCCEEEEeCCCCCceEEEEeCCcc
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISC-AEDKTVRLWDVSASAEVQKLEFGAVP   84 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~-s~D~ti~iwd~~~~~~~~~~~~~~~~   84 (231)
                      .|+..|..+|+.++++.-.. ..+.....++               +.+|+.. -.++.+.++|..+.+.+.++..+...
T Consensus        66 ~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~---------------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG  129 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIELGK-RYFGEGISDW---------------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG  129 (262)
T ss_dssp             EEEEECTTTCCEEEEEECCT-TCCEEEEEEE---------------TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eEEEEECCCCcEEEEEecCC-ccceeEEEEe---------------CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc
Confidence            67777777777777654321 2222111111               3344444 45789999999999999998876543


Q ss_pred             eeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeecc---ce---eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          85 NSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVP---AQ---VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        85 ~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      .  .+++++..++++. .+.+.++|..+.+.++.+...   .+   .+.+.+  . ++.+.+..-.+..|.+.|.++++.
T Consensus       130 ~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~-~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          130 W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--V-DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--E-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--E-CCEEEEEEccCCeEEEEECCCCcE
Confidence            3  4446778787775 468999999998888776552   12   222333  2 566665555677899999999987


Q ss_pred             eeeccCC------------CCCeeEEEEcCCCCEEEEee
Q psy6442         158 IESFKGH------------FGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       158 ~~~~~~h------------~~~V~~v~~spd~~~laS~s  184 (231)
                      +..+.-.            ..-.+.+||+|+++.|...+
T Consensus       205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            7665321            13458999999876554444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.62  E-value=1e-05  Score=64.73  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=127.8

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccc----c------cc-----------ccCCCEEEEEeC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA----D------FQ-----------AKNNTRLISCAE   60 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~----d------~~-----------~~~~~~l~s~s~   60 (231)
                      +.++.+..++ .+|+.+-.+..+...+.++...+++...+....    |      +.           ...+..|..++.
T Consensus        37 t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~  115 (330)
T 3hxj_A           37 SSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSM  115 (330)
T ss_dssp             STTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCEEEEECCCGGGGGGSCC-----CCEEEETTEEEEECT
T ss_pred             cCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCcEEEECCCCcEEEEEECCCCcccCceEECCEEEEEec
Confidence            3467788888 778876665554445556666555443321110    0      00           012566788888


Q ss_pred             CCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE
Q psy6442          61 DKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (231)
                      ++.+..+|.. ++........ ..+.++...+++...+.+.++.+..+|.. .+.......+.... ......+++.+.+
T Consensus       116 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~-~~~~~d~~g~l~v  192 (330)
T 3hxj_A          116 DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT-SAASIGKDGTIYF  192 (330)
T ss_dssp             TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC-SCCEECTTCCEEE
T ss_pred             CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce-eeeEEcCCCEEEE
Confidence            9999999988 6665555443 33456677778876666666889999987 55555544332211 1122355666544


Q ss_pred             EecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcc
Q psy6442         140 CGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSS  219 (231)
Q Consensus       140 ~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      . +  +.++.+| .+++.+..+......+.++...+++.+++ ++.++.|..++. +++....... .+.....+.++.+
T Consensus       193 ~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~  265 (330)
T 3hxj_A          193 G-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKT-GKRIESSPVIGNT  265 (330)
T ss_dssp             E-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEEC-SSCCCSCCEECTT
T ss_pred             E-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeC-CCCccccceEcCC
Confidence            4 3  7889999 67777766665556788999999987665 555777888874 5555433332 2233334555555


Q ss_pred             cccc
Q psy6442         220 GHLN  223 (231)
Q Consensus       220 ~~~~  223 (231)
                      |+++
T Consensus       266 g~l~  269 (330)
T 3hxj_A          266 DTIY  269 (330)
T ss_dssp             SCEE
T ss_pred             CeEE
Confidence            5543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.53  E-value=1.3e-05  Score=69.54  Aligned_cols=216  Identities=9%  Similarity=0.008  Sum_probs=137.2

Q ss_pred             CCCceeeeccCCCeEe--eeecccccEEEEEE-C-CCCceeEecccccc--ccCCCEEEEE-eCCCCEEEEeCCCCCceE
Q psy6442           4 DGKPMLRQGDTGDWIG--TFEGHKGCVWGVDI-N-KDASKAASGAADFQ--AKNNTRLISC-AEDKTVRLWDVSASAEVQ   76 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~--~l~gH~~~V~~~~~-~-~~~~~~~s~~~d~~--~~~~~~l~s~-s~D~ti~iwd~~~~~~~~   76 (231)
                      ++.|.+.+..+.+..+  .+... .....+.+ + |+++++..++....  +.++..|..+ -.++.+-+.|..+.+...
T Consensus       111 ~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~  189 (595)
T 1fwx_A          111 NTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  189 (595)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence            4457777888888766  44322 23677777 4 78777665543222  1223333222 234578889999998888


Q ss_pred             EEEeCCcceeEEEccCCCEEEEEcCC---------------------------------------eEEEEECCC--cce-
Q psy6442          77 KLEFGAVPNSLEISRDGTTITVTHGS---------------------------------------CVTFLDANS--LEL-  114 (231)
Q Consensus        77 ~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------------~i~~~d~~~--~~~-  114 (231)
                      .+..+..+..++.+|+++.+++++.+                                       .+.+.|..+  ... 
T Consensus       190 qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~  269 (595)
T 1fwx_A          190 QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF  269 (595)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS
T ss_pred             EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee
Confidence            88887788999999999988875421                                       245556555  223 


Q ss_pred             EEeeeccceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCCcc------------eeeeccCCCCCeeEEEEcCCCCEEE
Q psy6442         115 IKEHKVPAQVHSASLLLNSERPIFVCG-GEDLKMYKFDYSTGA------------EIESFKGHFGPIHCVKFSPDGELYA  181 (231)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~~~------------~~~~~~~h~~~V~~v~~spd~~~la  181 (231)
                      ++.+..+...+.+  ..+|+++.++.. ..+.++.++|..+.+            ...+.+ -....+.++|+|+|..+.
T Consensus       270 ~~~Ipvg~~PhGv--~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~  346 (595)
T 1fwx_A          270 TRYIPIANNPHGC--NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYT  346 (595)
T ss_dssp             EEEEEEESSCCCE--EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEE
T ss_pred             EEEEecCCCceEE--EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEE
Confidence            3344333333333  348899876554 566789999998652            233333 123467899999997677


Q ss_pred             EeeCCCcEEEEeCCC----------CCeeeeeecc-C---CcccCCCCCCcccccc
Q psy6442         182 SGSEDGTLRLWQTNV----------GKTYGLWKCI-E---GGLNNSLGLDSSGHLN  223 (231)
Q Consensus       182 S~s~d~~v~iwd~~~----------~~~~~~~~~~-~---~~~~~~~~~~~~~~~~  223 (231)
                      +.-.|++|.+||+..          .+..+..... .   ...+.-+....+|+.+
T Consensus       347 t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          347 SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence            888999999999877          4555555432 2   2334555667777765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.52  E-value=1.6e-06  Score=70.69  Aligned_cols=173  Identities=11%  Similarity=0.045  Sum_probs=100.4

Q ss_pred             CCceeeeccCCCeEeeeecc------cccEEEEEECCCCceeEeccccccccCCCEEEEEe---CCCCEEEEeCCCCCce
Q psy6442           5 GKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKDASKAASGAADFQAKNNTRLISCA---EDKTVRLWDVSASAEV   75 (231)
Q Consensus         5 ~~~~~~~~~~g~~i~~l~gH------~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s---~D~ti~iwd~~~~~~~   75 (231)
                      ++|..|+..+|+++.++..+      ...+..+.+++++              +..+++-.   .++.|.+||+.+++..
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~--------------g~~yvtd~~~~~~~~i~v~d~~~g~~~  158 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH--------------NFVYISDPAPDDKAALIRVDLQTGLAA  158 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT--------------TEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC--------------CEEEEEcCccCCCCeEEEEECCCCCEE
Confidence            45666666666666555421      1223445554432              22344544   5788999998876654


Q ss_pred             EEEEe------------------------------CCcceeEEEccCCCEEEEEc--CCeEEEEECC---Ccc-----e-
Q psy6442          76 QKLEF------------------------------GAVPNSLEISRDGTTITVTH--GSCVTFLDAN---SLE-----L-  114 (231)
Q Consensus        76 ~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~---~~~-----~-  114 (231)
                      +.+..                              ...++.++++|+++.+++..  ...+..++..   ...     . 
T Consensus       159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence            43311                              01257899999998887754  2355555421   100     0 


Q ss_pred             --EEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC-CCCCeeEEEEcCCCCEEEEeeCCCcEEE
Q psy6442         115 --IKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG-HFGPIHCVKFSPDGELYASGSEDGTLRL  191 (231)
Q Consensus       115 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~-h~~~V~~v~~spd~~~laS~s~d~~v~i  191 (231)
                        +...........+  ..++++.+.++...+++|.+||..+++....... +...+.+++|.|++.++++.+..+.+.+
T Consensus       239 ~~~~~~g~~g~pdgi--a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~  316 (343)
T 2qe8_A          239 SKIERYSEKPICDGI--SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP  316 (343)
T ss_dssp             TTCEEEEECCSCSCE--EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred             cceEecccCCCCceE--EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence              0111001111222  3377888888888889999999855553222221 2456889999999999888887666655


Q ss_pred             Ee
Q psy6442         192 WQ  193 (231)
Q Consensus       192 wd  193 (231)
                      |+
T Consensus       317 f~  318 (343)
T 2qe8_A          317 LN  318 (343)
T ss_dssp             GB
T ss_pred             cc
Confidence            55

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.52  E-value=1.9e-05  Score=64.70  Aligned_cols=148  Identities=13%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEE----
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHS----  126 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----  126 (231)
                      .+..++.++.|+.|..+|..+++.+........+.......++..++.+.++.+..+|..+.+.+.....+.+...    
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            3567888889999999999999988777665433222122344444445677899999988887776655332210    


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-------CeeEEEEcC--CCCEEEEeeCCCcEEEEeCCCC
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-------PIHCVKFSP--DGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-------~V~~v~~sp--d~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ......  +..++.+..++.+..+|..+++.+..+.....       .+..+.-+|  .+..+..++.++.|..+|..+|
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            001111  23567778889999999988887765432110       000011111  1345555666777777777777


Q ss_pred             Cee
Q psy6442         198 KTY  200 (231)
Q Consensus       198 ~~~  200 (231)
                      +..
T Consensus       260 ~~~  262 (376)
T 3q7m_A          260 QIM  262 (376)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.49  E-value=1.3e-05  Score=65.74  Aligned_cols=143  Identities=9%  Similarity=0.061  Sum_probs=90.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce------eEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeecccee
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN------SLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQV  124 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~  124 (231)
                      +..++.++.++.|..+|..+++.+........+.      ..... ++ .+++ ..++.+..+|..+.+.+.......+.
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            4578888889999999999998877766543321      11222 33 3444 44678999999888777665433210


Q ss_pred             EEE---E---EEecC--CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         125 HSA---S---LLLNS--ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       125 ~~~---~---~~~~~--~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ...   .   ....|  .+..+..++.++.++.+|..+++.+.....  .....+..  ++..+..++.++.|..+|..+
T Consensus       221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred             CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence            000   0   00000  134466677889999999999988766542  23334433  355677778899999999999


Q ss_pred             CCee
Q psy6442         197 GKTY  200 (231)
Q Consensus       197 ~~~~  200 (231)
                      |+..
T Consensus       297 G~~~  300 (376)
T 3q7m_A          297 GVTL  300 (376)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            9864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.48  E-value=6.4e-06  Score=69.26  Aligned_cols=142  Identities=14%  Similarity=0.107  Sum_probs=100.2

Q ss_pred             CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcce
Q psy6442          51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLEL  114 (231)
Q Consensus        51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~  114 (231)
                      ++.+++.+...     ++|-+.|..+++.+..+..+..+ .++++||++.++++.           ++.+.++|..+.+.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            45565555543     69999999999999999988888 999999999888764           45899999999988


Q ss_pred             EEeeecc--------ceeEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEe
Q psy6442         115 IKEHKVP--------AQVHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASG  183 (231)
Q Consensus       115 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~  183 (231)
                      ++++..+        ....  .+.++++++.+..++.  +..|.++|+.+++.+.++.--.    +....|++ +.+++.
T Consensus       162 v~~I~v~g~~r~~~g~~P~--~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQW--MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN  235 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGG--GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred             EEEEECCCccccccCCCcc--eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence            8877653        1111  2334889998887764  5789999999998887765211    12333433 455555


Q ss_pred             eCCCcEEEEeCCCCCe
Q psy6442         184 SEDGTLRLWQTNVGKT  199 (231)
Q Consensus       184 s~d~~v~iwd~~~~~~  199 (231)
                      +.||.+.+.+..+++.
T Consensus       236 ~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          236 CRDGSLARVDFADGET  251 (426)
T ss_dssp             ETTSSEEEEECCTTCC
T ss_pred             cCCCCEEEEECCCCcE
Confidence            6666666666644443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.46  E-value=1.4e-05  Score=71.32  Aligned_cols=101  Identities=10%  Similarity=0.061  Sum_probs=68.3

Q ss_pred             CCCEEEEeCCCCCceEEEEeCCcc---------------------------------eeEEEccCCCEEEEEcCC-----
Q psy6442          61 DKTVRLWDVSASAEVQKLEFGAVP---------------------------------NSLEISRDGTTITVTHGS-----  102 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------~~v~~~~~~~~~~~~~~~-----  102 (231)
                      |+.|..+|..+++.+-........                                 ..++++|++..+++...+     
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            789999999999988777642211                                 246788888888765432     


Q ss_pred             ---------------eEEEEECCCcceEEeeeccce--------eEEEEEEecCCC---CEEEEecCCCeEEEEeCCCcc
Q psy6442         103 ---------------CVTFLDANSLELIKEHKVPAQ--------VHSASLLLNSER---PIFVCGGEDLKMYKFDYSTGA  156 (231)
Q Consensus       103 ---------------~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~g~~d~~i~~~d~~~~~  156 (231)
                                     .+.-+|..+.+.+..+.....        ..........++   ..++.++.++.++.+|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           488889988887766543110        001111112244   568888999999999999998


Q ss_pred             eeeec
Q psy6442         157 EIESF  161 (231)
Q Consensus       157 ~~~~~  161 (231)
                      .+..+
T Consensus       349 ~l~~~  353 (677)
T 1kb0_A          349 FISAK  353 (677)
T ss_dssp             EEEEE
T ss_pred             Eeccc
Confidence            87654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=9.6e-05  Score=57.17  Aligned_cols=159  Identities=11%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcce
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN   85 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~   85 (231)
                      .|+..|..+|+.+++..-... .+.......              ++...+..-.++.+.++|..+.+.+.++..+....
T Consensus        44 ~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~--------------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw  108 (243)
T 3mbr_X           44 SVRKVDLETGRILQRAEVPPP-YFGAGIVAW--------------RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW  108 (243)
T ss_dssp             EEEEEETTTCCEEEEEECCTT-CCEEEEEEE--------------TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC
T ss_pred             eEEEEECCCCCEEEEEeCCCC-cceeEEEEe--------------CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce
Confidence            567777777777666542211 111111111              12233444567899999999999999998766544


Q ss_pred             eEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc---e---eEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          86 SLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA---Q---VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        86 ~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      .+  ++++..++++. ++.+.++|..+.+.++++....   +   .+.+.+   .++.+.+..-.+..|.+.|.++++.+
T Consensus       109 gl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~---~~G~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          109 AL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW---VNGELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             EE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE---ETTEEEEEETTTTEEEEECTTTCBEE
T ss_pred             EE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE---eCCEEEEEECCCCeEEEEECCCCCEE
Confidence            44  56777777775 4689999999988887765421   1   222222   25555555555678999999999876


Q ss_pred             eeccCC-------------CCCeeEEEEcCCCCEEEEee
Q psy6442         159 ESFKGH-------------FGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       159 ~~~~~h-------------~~~V~~v~~spd~~~laS~s  184 (231)
                      ..+.-.             ..-.+.+|++|+++.|...+
T Consensus       184 ~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          184 AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            654311             13468899999866444333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.39  E-value=3.1e-05  Score=61.87  Aligned_cols=160  Identities=15%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc-eeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA-QVHSASL  129 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~  129 (231)
                      +..|..++.++.|..+|.. ++.+...... ..+.++...+++...+.+  +.+..+| .+.+.......+. .+..  +
T Consensus       147 ~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~--~  220 (330)
T 3hxj_A          147 DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTR--P  220 (330)
T ss_dssp             TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSC--C
T ss_pred             CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceec--e
Confidence            4457778888999999998 7766665543 345666777777755444  7788888 5544444433322 2222  2


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      ...+++. +..++.++.+..+|. ++..+..+......+.++.+.+++.++ .++.++.|..+|. +++....... .+.
T Consensus       221 ~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~ggl~~~d~-~g~~~~~~~~-~~~  295 (330)
T 3hxj_A          221 AISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGHLYAINP-DGTEKWNFET-GSW  295 (330)
T ss_dssp             EECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCEEEEECT-TSCEEEEEEC-SSC
T ss_pred             EECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEE-EecCCCCEEEECC-CCcEEEEEEc-CCc
Confidence            2355554 445566778888874 566666655444445566777677654 4667888999996 6765544332 233


Q ss_pred             ccCCCCCCccccc
Q psy6442         210 LNNSLGLDSSGHL  222 (231)
Q Consensus       210 ~~~~~~~~~~~~~  222 (231)
                      ....+..+.+|++
T Consensus       296 ~~~~~~~d~~g~l  308 (330)
T 3hxj_A          296 IIATPVIDENGTI  308 (330)
T ss_dssp             CCSCCEECTTCCE
T ss_pred             cccceEEcCCCEE
Confidence            3444445455543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.38  E-value=1.3e-05  Score=71.52  Aligned_cols=164  Identities=10%  Similarity=0.096  Sum_probs=98.5

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEE-c
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVT-H  100 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~  100 (231)
                      +|...+..+.|+|||++++-+..          .+++.+.+|++||+.+++.+.. ..... ...++|+ |++.++.. .
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~----------~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~  193 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLS----------LAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSY  193 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEE----------CSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEES
T ss_pred             CCcEEEEEEEECCCCCEEEEEEe----------cCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEe
Confidence            45567888899999876643210          0122335799999999986543 22222 4578999 99876654 3


Q ss_pred             C-------------CeEEEEECCCcce--EEeeeccc--eeEEEEEEecCCCCEEEEec----CCCeEEEEeCCCcc-ee
Q psy6442         101 G-------------SCVTFLDANSLEL--IKEHKVPA--QVHSASLLLNSERPIFVCGG----EDLKMYKFDYSTGA-EI  158 (231)
Q Consensus       101 ~-------------~~i~~~d~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~g~----~d~~i~~~d~~~~~-~~  158 (231)
                      +             ..+.+|++.+...  ...+..+.  +........+++++.++...    ....|+++|+.++. ..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence            3             2377888765432  22222222  22123344588888765432    23589999987653 34


Q ss_pred             eeccCCCCCeeEEEEcCCCCE-EEEeeCC---CcEEEEeCCCCCe
Q psy6442         159 ESFKGHFGPIHCVKFSPDGEL-YASGSED---GTLRLWQTNVGKT  199 (231)
Q Consensus       159 ~~~~~h~~~V~~v~~spd~~~-laS~s~d---~~v~iwd~~~~~~  199 (231)
                      ..+..+....... +++++.. ++....+   +.|.++++.++..
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~  317 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP  317 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            5555566665555 6676654 4444443   5788999987754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.37  E-value=1.3e-05  Score=69.51  Aligned_cols=188  Identities=13%  Similarity=0.081  Sum_probs=124.7

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc---------------------------ccCCCEEE
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ---------------------------AKNNTRLI   56 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~---------------------------~~~~~~l~   56 (231)
                      ++.+.+.|.++.+.+.+..--. .-..++++|+|+.+...+.+-.                           +.+++.+.
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4566777777777766654211 2245678899988887654320                           11344333


Q ss_pred             EEeCCCCEEEEeCCC--CCc-eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc------------eEEeee
Q psy6442          57 SCAEDKTVRLWDVSA--SAE-VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE------------LIKEHK  119 (231)
Q Consensus        57 s~s~D~ti~iwd~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~------------~~~~~~  119 (231)
                      .    +.|.+.|..+  ++. +..+..+..+-.+.++|||+.++++.  .+.+.++|..+.+            ......
T Consensus       253 i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          253 L----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             E----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             E----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            2    5699999998  555 67888888899999999999998875  4689999988653            223333


Q ss_pred             ccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCC----------cceeeeccCCCCCe-----eEEEEcCCCCEEEEee
Q psy6442         120 VPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYST----------GAEIESFKGHFGPI-----HCVKFSPDGELYASGS  184 (231)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~----------~~~~~~~~~h~~~V-----~~v~~spd~~~laS~s  184 (231)
                      ......  -..+++++...++---+..|-.||...          .+.+.++..|..+-     ..+.++|||++|.+..
T Consensus       329 vG~gP~--h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          329 LGLGPL--HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             CCSCEE--EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCCcc--eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            222222  234488884445566788999999876          45566666665442     2345789999988875


Q ss_pred             ---CCCcE----------EEEeCCCCC
Q psy6442         185 ---EDGTL----------RLWQTNVGK  198 (231)
Q Consensus       185 ---~d~~v----------~iwd~~~~~  198 (231)
                         .|+.+          .|+|+..++
T Consensus       407 k~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          407 KFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCCccccccCCCCCCCcceEEEcCCCc
Confidence               35542          889996555

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.34  E-value=3.2e-05  Score=65.03  Aligned_cols=170  Identities=13%  Similarity=0.153  Sum_probs=109.7

Q ss_pred             EEEEEeCCCCEEEEeCCCC----CceEEEE---e----C-CcceeEEEccCCCEEEE-EcC------CeEEEEECCCcce
Q psy6442          54 RLISCAEDKTVRLWDVSAS----AEVQKLE---F----G-AVPNSLEISRDGTTITV-THG------SCVTFLDANSLEL  114 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~----~~~~~~~---~----~-~~~~~v~~~~~~~~~~~-~~~------~~i~~~d~~~~~~  114 (231)
                      .++++..+++|.+.|+.+.    +...+++   +    + ..+-.+.+.|++ .++. ..+      +.+.++|..+.+.
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v  176 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP  176 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence            3667778899999999754    3344442   1    1 245677889999 3322 222      5799999999888


Q ss_pred             EEeeeccc--eeEEEEEEecCCCCEEEEec-------------------CCCeEEEEeCCCcceeeeccCC--CCCeeEE
Q psy6442         115 IKEHKVPA--QVHSASLLLNSERPIFVCGG-------------------EDLKMYKFDYSTGAEIESFKGH--FGPIHCV  171 (231)
Q Consensus       115 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~-------------------~d~~i~~~d~~~~~~~~~~~~h--~~~V~~v  171 (231)
                      +.+...+.  ....+.+.++|++..+++..                   ...+|.+||+.+++.++++.--  ......+
T Consensus       177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL  256 (462)
T ss_dssp             EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred             EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence            88775431  12222345588888888875                   3678999999988877776531  1234566


Q ss_pred             EE--cCCCCEEEEe-e-----CCCcEEEEeCCCCCeeeeeec-------cC-------------CcccCCCCCCcccccc
Q psy6442         172 KF--SPDGELYASG-S-----EDGTLRLWQTNVGKTYGLWKC-------IE-------------GGLNNSLGLDSSGHLN  223 (231)
Q Consensus       172 ~~--spd~~~laS~-s-----~d~~v~iwd~~~~~~~~~~~~-------~~-------------~~~~~~~~~~~~~~~~  223 (231)
                      .|  +|+++++..+ .     .+++|.+|....|+ +..-+.       +.             +..++-|.++.+|+++
T Consensus       257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence            66  9999865444 4     67789887765543 111110       00             3567788888888776


Q ss_pred             ce
Q psy6442         224 NV  225 (231)
Q Consensus       224 ~~  225 (231)
                      =|
T Consensus       336 YV  337 (462)
T 2ece_A          336 YL  337 (462)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.31  E-value=0.00061  Score=53.00  Aligned_cols=146  Identities=6%  Similarity=0.030  Sum_probs=86.3

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc----CCeEEEEECCCcceEEeeeccc-eeEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH----GSCVTFLDANSLELIKEHKVPA-QVHSAS  128 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~  128 (231)
                      +++-...+.|.+++.........+... ..+..++++|++..++++.    .+.|..++.............. ....  
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~g--  171 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG--  171 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE--
T ss_pred             EEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcE--
Confidence            344445678888888644332222222 4688999999777666654    2467777765322111111111 2223  


Q ss_pred             EEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         129 LLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       129 ~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      +..++++. +.++-....+|+.+|.........+.+ ......++.. .+.++++....+.|..+|..+++....+.
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            33466554 445555668899999865443333332 2334567664 45566666678899999999999887775

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.24  E-value=0.00011  Score=65.43  Aligned_cols=61  Identities=11%  Similarity=0.138  Sum_probs=47.6

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++.|+.||..+++.+.+++.+ .++....+...+.++..++.|+.++.||.++|+.+...+.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            478999999999988776533 3444445666777888899999999999999998766654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.18  E-value=0.00025  Score=63.34  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=97.1

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-Cc--ceeEEEcc---CCCEEEEEc-------CCeEEEEECCCcceEEe
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AV--PNSLEISR---DGTTITVTH-------GSCVTFLDANSLELIKE  117 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~--~~~v~~~~---~~~~~~~~~-------~~~i~~~d~~~~~~~~~  117 (231)
                      .+.+|+.++.|+.|.-+|..+++.+-..... ..  ...+..+|   ++ .+++..       ++.+.-+|..+.+.+..
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            3567888999999999999999988776543 10  01111111   33 334432       46788899998887766


Q ss_pred             eec-c---ce-----------------------eEE---EEEEecCCCCEEEEecCCC-------------------eEE
Q psy6442         118 HKV-P---AQ-----------------------VHS---ASLLLNSERPIFVCGGEDL-------------------KMY  148 (231)
Q Consensus       118 ~~~-~---~~-----------------------~~~---~~~~~~~~~~~~~~g~~d~-------------------~i~  148 (231)
                      +.. +   ..                       ...   .....+++..++..+..++                   .|+
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            542 1   00                       000   0123366667777776665                   399


Q ss_pred             EEeCCCcceeeeccC--CC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         149 KFDYSTGAEIESFKG--HF-------GPIHCVKFSPDGE---LYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~--h~-------~~V~~v~~spd~~---~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      .+|..+|+.+..++.  |.       .++.......+|.   .++.++.+|.++++|..+|+....
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            999999998876643  21       2222223333564   788999999999999999998643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.0015  Score=53.14  Aligned_cols=185  Identities=17%  Similarity=0.251  Sum_probs=115.7

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCC---E-EEEEeC--CCCEEEEeC--CCCCce
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNT---R-LISCAE--DKTVRLWDV--SASAEV   75 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~---~-l~s~s~--D~ti~iwd~--~~~~~~   75 (231)
                      ++-+.+++. +|+.++.+..  +.+..++.-|+-.          . .++   . ++|.-.  +.+|.++++  .++. +
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~----------l-~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFP----------L-NGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEE----------E-TTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CCCEEEEcC-CCcEEEEccC--CCcccEEEecccc----------c-CCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            355778887 7888888764  5677776655210          0 111   1 344444  578999966  3333 4


Q ss_pred             EEEE-------eC-CcceeEEE--ccC-CC-EEEEE-cCCeEEEEECC-------CcceEEeeeccceeEEEEEEecCCC
Q psy6442          76 QKLE-------FG-AVPNSLEI--SRD-GT-TITVT-HGSCVTFLDAN-------SLELIKEHKVPAQVHSASLLLNSER  135 (231)
Q Consensus        76 ~~~~-------~~-~~~~~v~~--~~~-~~-~~~~~-~~~~i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  135 (231)
                      ..+.       .. ..++.++.  +|. +. +++++ .++.+..|++.       ..+.++++..+.+...+..  ++..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcvv--Dd~~  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAA--DDEY  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEE--ETTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEE--cCCC
Confidence            4441       11 45667777  664 43 45555 45777777652       3345677777666555444  6777


Q ss_pred             CEEEEecCCCeEEEEeCC-----Ccceeeecc-CC-CCCeeEEEE--cCCCC--EEEEeeCCCcEEEEeCC-CCCeeeee
Q psy6442         136 PIFVCGGEDLKMYKFDYS-----TGAEIESFK-GH-FGPIHCVKF--SPDGE--LYASGSEDGTLRLWQTN-VGKTYGLW  203 (231)
Q Consensus       136 ~~~~~g~~d~~i~~~d~~-----~~~~~~~~~-~h-~~~V~~v~~--spd~~--~laS~s~d~~v~iwd~~-~~~~~~~~  203 (231)
                      ..+..+-++.-||.++.+     +++.+..+. +| .+.+..|++  .++++  +|+|+-.+++..+||.+ +.+....+
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            778888888889999964     344555442 33 347888888  45554  56666578899999996 66777766


Q ss_pred             ec
Q psy6442         204 KC  205 (231)
Q Consensus       204 ~~  205 (231)
                      +-
T Consensus       272 ~I  273 (355)
T 3amr_A          272 RI  273 (355)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.01  E-value=0.0023  Score=55.83  Aligned_cols=101  Identities=8%  Similarity=-0.068  Sum_probs=64.6

Q ss_pred             CCCEEEEeCCCCCceEEEEeCCcc---------------------------------------eeEEEccCCCEEEEEcC
Q psy6442          61 DKTVRLWDVSASAEVQKLEFGAVP---------------------------------------NSLEISRDGTTITVTHG  101 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~~  101 (231)
                      |+.|..+|..+++.+-........                                       ..+++.++...+++...
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            799999999999988777653221                                       12455666566665432


Q ss_pred             -----------------CeEEEEECCCcceEEeeeccc--------eeEEEEEEecCCC---CEEEEecCCCeEEEEeCC
Q psy6442         102 -----------------SCVTFLDANSLELIKEHKVPA--------QVHSASLLLNSER---PIFVCGGEDLKMYKFDYS  153 (231)
Q Consensus       102 -----------------~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~g~~d~~i~~~d~~  153 (231)
                                       +.+.-+|..+.+.+..+....        ...........++   ..++.++.++.++.+|..
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~  334 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence                             257788988888776654321        0011111112245   356678889999999999


Q ss_pred             Ccceeeec
Q psy6442         154 TGAEIESF  161 (231)
Q Consensus       154 ~~~~~~~~  161 (231)
                      +++.+..+
T Consensus       335 tG~~~w~~  342 (571)
T 2ad6_A          335 NGNLIVAE  342 (571)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEeee
Confidence            99877654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.00  E-value=0.003  Score=49.03  Aligned_cols=142  Identities=6%  Similarity=0.033  Sum_probs=84.3

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL  130 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  130 (231)
                      +++-...+.|..++...+.....+... ..+..+++.+++..++++.  .+.|..++............. .....  +.
T Consensus        51 y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~--i~  128 (267)
T 1npe_A           51 YWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG--IV  128 (267)
T ss_dssp             EEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE--EE
T ss_pred             EEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE--EE
Confidence            445555678999998765443323222 4688999999877777654  468888887643222111111 12233  33


Q ss_pred             ecCC-CCEEEEecC--CCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCe
Q psy6442         131 LNSE-RPIFVCGGE--DLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       131 ~~~~-~~~~~~g~~--d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~~~  199 (231)
                      .+++ +.+.++...  .++|+.++... .....+ .........++++|++. ++++-...+.|..++...++.
T Consensus       129 vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          129 TDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             EeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence            4664 444444332  46888887643 222222 12234578999999765 556667788999999875443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.94  E-value=0.0045  Score=49.19  Aligned_cols=185  Identities=12%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCC
Q psy6442          14 TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG   93 (231)
Q Consensus        14 ~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~   93 (231)
                      ..+.+..|..+ .....+.|.++++               .+++-...+.|..+|... +....+.....+..+++.+++
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~---------------lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG   83 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGT---------------IFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG   83 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSC---------------EEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS
T ss_pred             CceEeEeCCCC-CCcceEEECCCCC---------------EEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC
Confidence            34556666433 3456777877643               344544677888888764 334445556678999999999


Q ss_pred             CEEEEEcC--C-eEEEEECCCcceEEeeeccc-e-eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc-eee--------
Q psy6442          94 TTITVTHG--S-CVTFLDANSLELIKEHKVPA-Q-VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA-EIE--------  159 (231)
Q Consensus        94 ~~~~~~~~--~-~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~-~~~--------  159 (231)
                      +.+++...  + .+..++..+.+.......+. . ......  .+.+..+++-...+.|+.+|...+. .+.        
T Consensus        84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            86544422  2 46667766655433222221 1 111121  3344445555567899999976542 111        


Q ss_pred             -eccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC-CCe--eeeeeccCCcccCCCCCCcccc
Q psy6442         160 -SFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV-GKT--YGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       160 -~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                       ...+.....+.+  +|++. ++++-+..+.|..+++.. ++.  ...+..  ...+.-++++.+|+
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~  224 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGN  224 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCC
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCC
Confidence             011112234555  88876 556667788999999864 432  122221  13455566776664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.92  E-value=5.5e-05  Score=62.38  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=92.0

Q ss_pred             EEEEeCCC----CEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcceEEeee
Q psy6442          55 LISCAEDK----TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        55 l~s~s~D~----ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~  119 (231)
                      +++-..++    +|-+.|..+++.+.++..+..+ .+.++||++.++++.           ++.+.++|..+.+.++++.
T Consensus        35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            44444445    7889999999999999988777 899999999988874           4689999999999988876


Q ss_pred             cc--------ceeEEEEEEecCCCCEEEEecC--CCeEEE--EeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCC
Q psy6442         120 VP--------AQVHSASLLLNSERPIFVCGGE--DLKMYK--FDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSED  186 (231)
Q Consensus       120 ~~--------~~~~~~~~~~~~~~~~~~~g~~--d~~i~~--~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d  186 (231)
                      .+        .....  +.++|+++.++.++.  ...+.+  +|..+   +.++.-- +.   ..+.|++ +.+++.+.|
T Consensus       114 v~~~~~~~~g~~P~~--ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          114 LPDAPRFSVGPRVHI--IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             ETTSCSCCBSCCTTS--EEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCT
T ss_pred             CCCccccccCCCcce--EEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCC
Confidence            54        11222  334889988887764  356777  88876   3333210 11   1234544 355666778


Q ss_pred             CcEEEEeCCC
Q psy6442         187 GTLRLWQTNV  196 (231)
Q Consensus       187 ~~v~iwd~~~  196 (231)
                      +.+.+.++.+
T Consensus       185 g~~~~vd~~~  194 (368)
T 1mda_H          185 ASLAASDLAA  194 (368)
T ss_dssp             TSCEEEECCS
T ss_pred             CCEEEEECcc
Confidence            8877777765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.90  E-value=0.0013  Score=57.26  Aligned_cols=61  Identities=20%  Similarity=0.079  Sum_probs=44.3

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++.++.+|..+++.+.+++. ..++.+..+...+.++..++.|+.|+.||.++|+.....+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            57899999999998877652 23343333444456666789999999999999997765553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.87  E-value=0.0019  Score=51.69  Aligned_cols=168  Identities=10%  Similarity=0.062  Sum_probs=94.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEe---------------------CCcceeEEEcc-CCCEEEEEcCCeEEEEEC
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEF---------------------GAVPNSLEISR-DGTTITVTHGSCVTFLDA  109 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~---------------------~~~~~~v~~~~-~~~~~~~~~~~~i~~~d~  109 (231)
                      +..++++..++.|..||...++.. .+..                     ...+..+++.+ ++..+++.....+..+|.
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~  108 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS  108 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence            334677777888988987765432 2221                     12467889997 565544444556777886


Q ss_pred             CCcce--EEeeeccce-eEEEEEEecC-CCCEEEEecC-----------------CCeEEEEeCCCcceeeeccCCCCCe
Q psy6442         110 NSLEL--IKEHKVPAQ-VHSASLLLNS-ERPIFVCGGE-----------------DLKMYKFDYSTGAEIESFKGHFGPI  168 (231)
Q Consensus       110 ~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~-----------------d~~i~~~d~~~~~~~~~~~~h~~~V  168 (231)
                      .....  +.......+ .....+...+ ++.+.++-..                 .+.++.+|..+++...... .....
T Consensus       109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p  187 (322)
T 2fp8_A          109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVP  187 (322)
T ss_dssp             TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCC
T ss_pred             CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccC
Confidence            64432  111111111 0112233477 7776665322                 3678888876654322111 12345


Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEeCCCCC--eeeeeeccCCcccCCCCCCcccccc
Q psy6442         169 HCVKFSPDGE-LYASGSEDGTLRLWQTNVGK--TYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       169 ~~v~~spd~~-~laS~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      +.++++|+++ ++++-+..+.|..|++...+  ....+.. .++ +.-|.++.+|++|
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFW  243 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEE
Confidence            7899999998 45555677889999987532  1222222 223 5556777776544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.71  E-value=0.0075  Score=52.87  Aligned_cols=102  Identities=12%  Similarity=0.025  Sum_probs=66.1

Q ss_pred             CCCCEEEEeCCCCCceEEEEeCCcc---------------------------------------eeEEEccCCCEEEEEc
Q psy6442          60 EDKTVRLWDVSASAEVQKLEFGAVP---------------------------------------NSLEISRDGTTITVTH  100 (231)
Q Consensus        60 ~D~ti~iwd~~~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~  100 (231)
                      .++.|.-+|..+++.+-........                                       ...++.++...+++..
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            4899999999999988776654321                                       1235556666666654


Q ss_pred             C-----------------CeEEEEECCCcceEEeeeccce------e--EEEEEEec-CCC---CEEEEecCCCeEEEEe
Q psy6442         101 G-----------------SCVTFLDANSLELIKEHKVPAQ------V--HSASLLLN-SER---PIFVCGGEDLKMYKFD  151 (231)
Q Consensus       101 ~-----------------~~i~~~d~~~~~~~~~~~~~~~------~--~~~~~~~~-~~~---~~~~~g~~d~~i~~~d  151 (231)
                      .                 +.+.-+|..+.+....+.....      .  ........ .++   ..++.++.++.++.+|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            3                 3677889888887766543211      0  01111111 345   4577788999999999


Q ss_pred             CCCcceeeec
Q psy6442         152 YSTGAEIESF  161 (231)
Q Consensus       152 ~~~~~~~~~~  161 (231)
                      ..+++.+...
T Consensus       340 ~~tG~~lw~~  349 (599)
T 1w6s_A          340 RTDGALVSAN  349 (599)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEeecc
Confidence            9999877554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.70  E-value=0.0036  Score=55.58  Aligned_cols=152  Identities=12%  Similarity=0.101  Sum_probs=96.9

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcc--eeEEEcc--CCCEEEEEc-------CCeEEEEECCCcceEEeee
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISR--DGTTITVTH-------GSCVTFLDANSLELIKEHK  119 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~--~~v~~~~--~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~  119 (231)
                      .+.+|+.++.|+.|..+|..+++.+-........  ..+..+|  .+..+++..       ++.+.-+|..+.+.+..+.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            3567888889999999999999988777653110  0111111  123444432       3678889999888876654


Q ss_pred             cc-c-ee-------------------------EE---EEEEecCCCCEEEEecCCC-------------------eEEEE
Q psy6442         120 VP-A-QV-------------------------HS---ASLLLNSERPIFVCGGEDL-------------------KMYKF  150 (231)
Q Consensus       120 ~~-~-~~-------------------------~~---~~~~~~~~~~~~~~g~~d~-------------------~i~~~  150 (231)
                      .. . +.                         ..   .....++...++..+..++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            31 0 00                         00   0122355566666666554                   49999


Q ss_pred             eCCCcceeeeccC--CC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         151 DYSTGAEIESFKG--HF-------GPIHCVKFSPDGE---LYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       151 d~~~~~~~~~~~~--h~-------~~V~~v~~spd~~---~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      |..+|+.+..++.  |.       .++....+..+|.   .++.++.+|.+.++|..+|+....
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence            9999998876643  22       2333334444665   688999999999999999998643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.0016  Score=54.71  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-----C-eEEEEECCCcce-EEeeeccceeE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-----S-CVTFLDANSLEL-IKEHKVPAQVH  125 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~-~i~~~d~~~~~~-~~~~~~~~~~~  125 (231)
                      ..|+.+...+.|+.+|+..+...........+..+++++++..++++..     . .+..++...... ...........
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~  229 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN  229 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce
Confidence            4556555557788888877654443343456889999999997777643     1 233344322111 11111111112


Q ss_pred             EEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeecc-CCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q psy6442         126 SASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESFK-GHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTN  195 (231)
Q Consensus       126 ~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~  195 (231)
                      .+.  .++ ++.++++-...++|+.++...+....... +.....+.++|+|+++ ++++-...+.|..++..
T Consensus       230 gia--vdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          230 GAE--THPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CEE--ECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEE--EeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            222  367 67777776677899999987654322111 1123467899999999 66777788889998764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.67  E-value=0.0053  Score=53.62  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=43.8

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      ++.|..||+.+++.+.+.+.. .++..-.....+.++..++.|+.++.||.++|+.....+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            578999999999987665422 2333222233456777799999999999999997766654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.59  E-value=0.026  Score=50.96  Aligned_cols=141  Identities=6%  Similarity=0.028  Sum_probs=88.1

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe--------CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee------
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF--------GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK------  119 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------  119 (231)
                      .|..|..++-|..++...+... .+..        ...+.++...+++...+.+.++.+..++..+........      
T Consensus       322 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          322 GMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             CEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred             CEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence            4566777788888987654432 2221        234678888888887777777778888876544322110      


Q ss_pred             --c-cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         120 --V-PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK----GHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       120 --~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~----~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                        . ...+.  ++..++++.++..|..++-+..+|..+++...-..    .+...|.++...++|++++... + -|.+|
T Consensus       401 ~~l~~~~v~--~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~  476 (795)
T 4a2l_A          401 RGIGSNNIK--AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRF  476 (795)
T ss_dssp             -CCSCSCEE--EEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEE
T ss_pred             cCCCCccEE--EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEE
Confidence              0 11233  33335677635556666678899987765322211    1345799999999998777654 4 48999


Q ss_pred             eCCCCCe
Q psy6442         193 QTNVGKT  199 (231)
Q Consensus       193 d~~~~~~  199 (231)
                      |..+++.
T Consensus       477 ~~~~~~~  483 (795)
T 4a2l_A          477 NPEQRSF  483 (795)
T ss_dssp             ETTTTEE
T ss_pred             eCCCCeE
Confidence            9887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.57  E-value=0.0054  Score=53.60  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCe-eEEEEcCCCC-E
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI-HCVKFSPDGE-L  179 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V-~~v~~spd~~-~  179 (231)
                      +.+.-||..+.+.+.+.+...+.....+  ...+.++..++.|+.++.||.++++++.+++...+.. .-+.|..+|+ +
T Consensus       466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~--~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKEHLPLWAGVL--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEECCCCCEEEEecCCCCCcccce--EeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            5677788888777666554433221111  1134456668899999999999999998876433221 2266778886 4


Q ss_pred             EEEee
Q psy6442         180 YASGS  184 (231)
Q Consensus       180 laS~s  184 (231)
                      +++.+
T Consensus       544 v~~~~  548 (582)
T 1flg_A          544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            44443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.54  E-value=0.021  Score=45.50  Aligned_cols=150  Identities=12%  Similarity=0.035  Sum_probs=86.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE-eC----CcceeEEEcc-CCCEEEEEcC------------------CeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FG----AVPNSLEISR-DGTTITVTHG------------------SCVTFL  107 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~----~~~~~v~~~~-~~~~~~~~~~------------------~~i~~~  107 (231)
                      +..|+.+...+.|..+|..++....... ..    ..++.+++.+ ++...+....                  +.+..+
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            3456666555668888876543221111 11    2468899999 8876554322                  457777


Q ss_pred             ECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         108 DANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       108 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                      |..+.+.............  +..++++..+ ++-....+|+.+++....  ....+....+ ...+++.++|+++++..
T Consensus       171 d~~~~~~~~~~~~~~~p~g--ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          171 DPSTKETTLLLKELHVPGG--AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             ETTTTEEEEEEEEESCCCE--EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             eCCCCEEEEeccCCccCcc--eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            7765443221111111122  2347887754 444566889999986421  1111111123 78899999999887775


Q ss_pred             C----------CCcEEEEeCCCCCeeeeeec
Q psy6442         185 E----------DGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       185 ~----------d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .          .+.|..+|. .|+....+..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~  277 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPL  277 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred             CcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence            5          466888887 4777666654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.53  E-value=0.0053  Score=55.27  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=85.7

Q ss_pred             cEEEEEEC-CCCceeEeccccccccCCCEEEEEeCC----CCEEEEeCCCC-CceEEEEeCCcceeEEEccCCCEEEEE-
Q psy6442          27 CVWGVDIN-KDASKAASGAADFQAKNNTRLISCAED----KTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVT-   99 (231)
Q Consensus        27 ~V~~~~~~-~~~~~~~s~~~d~~~~~~~~l~s~s~D----~ti~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-   99 (231)
                      .+....|+ |||++++-              +.+.+    .+|+++|+.++ +.+.. .+......++|+||++.++.. 
T Consensus       175 ~~~~~~~S~PDG~~lAy--------------~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAF--------------SVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEE--------------EEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEE--------------EEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEE
Confidence            46678888 88766542              22222    35999999988 53211 111224578999999876543 


Q ss_pred             cC-----CeEEEEECCCcce--EEeeeccceeEEEEEEecCCCCEEEEec---CCCeEEEEeCCCcc-ee--eec-cCCC
Q psy6442         100 HG-----SCVTFLDANSLEL--IKEHKVPAQVHSASLLLNSERPIFVCGG---EDLKMYKFDYSTGA-EI--ESF-KGHF  165 (231)
Q Consensus       100 ~~-----~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~d~~i~~~d~~~~~-~~--~~~-~~h~  165 (231)
                      .+     ..|..+++.+...  ...+..+.........++++++.++...   ....|+++|+.++. ..  ..+ .+..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            32     2566677765431  1222211111123344588998776544   34568899987652 22  333 3444


Q ss_pred             CCeeEEEEcCCCCEEEEeeCC--C--cEEEEeCCC
Q psy6442         166 GPIHCVKFSPDGELYASGSED--G--TLRLWQTNV  196 (231)
Q Consensus       166 ~~V~~v~~spd~~~laS~s~d--~--~v~iwd~~~  196 (231)
                      .+..++.|+..+.+++....+  +  .|..+++.+
T Consensus       320 ~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          320 GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            566666665555555554443  3  455556654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.50  E-value=0.027  Score=50.85  Aligned_cols=159  Identities=10%  Similarity=0.069  Sum_probs=93.4

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEE----e-CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec------c-c
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLE----F-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV------P-A  122 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~-~  122 (231)
                      |..+..++-+..+|..+++......    . ...+.++...+++...+.+. +.+..++..+.........      + .
T Consensus       420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCc
Confidence            6667777789999988765432211    1 23567788888887766665 5688888766543322111      1 1


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc-------CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-------GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~-------~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      .+.  ++..++++.+.+...  .-+..||..++..  .+.       .....|.++...++|++.++...  -|..||..
T Consensus       499 ~i~--~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~  570 (795)
T 4a2l_A          499 QIT--TLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEK  570 (795)
T ss_dssp             CEE--EEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETT
T ss_pred             eEE--EEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCC
Confidence            233  333466776655443  4577888765543  221       13457899999999997776553  58889987


Q ss_pred             CCCeeeeee---ccCCcccCCCCCCcccccc
Q psy6442         196 VGKTYGLWK---CIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       196 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  223 (231)
                      +++.. ...   +..+.....|..+.+|++|
T Consensus       571 ~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW  600 (795)
T 4a2l_A          571 DKQIK-RYNTTNGLPNNVVYGILEDSFGRLW  600 (795)
T ss_dssp             TTEEE-EECGGGTCSCSCEEEEEECTTSCEE
T ss_pred             CCcEE-EeCCCCCCchhheEEEEECCCCCEE
Confidence            76432 222   1222222335556666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.49  E-value=0.017  Score=46.59  Aligned_cols=143  Identities=7%  Similarity=0.065  Sum_probs=93.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCC---------cceeEEE---ccCCCEEEEEc--------------CCeEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGA---------VPNSLEI---SRDGTTITVTH--------------GSCVT  105 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~---------~~~~v~~---~~~~~~~~~~~--------------~~~i~  105 (231)
                      +..+++.-..++|..||...+..... .++.         .+..+.+   .|+++.+++..              ...+.
T Consensus        25 g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~  103 (334)
T 2p9w_A           25 QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFH  103 (334)
T ss_dssp             TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEE
T ss_pred             CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEE
Confidence            33445555789999999876654333 3322         3578899   68877666433              45688


Q ss_pred             EEECC---CcceEEeeecc------------ceeEEEEEEecCCCCEEEEecCC-CeEEEEeCCCcceeeec------cC
Q psy6442         106 FLDAN---SLELIKEHKVP------------AQVHSASLLLNSERPIFVCGGED-LKMYKFDYSTGAEIESF------KG  163 (231)
Q Consensus       106 ~~d~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~d-~~i~~~d~~~~~~~~~~------~~  163 (231)
                      .+|+.   +.+.+......            ......-+..++++...++++.. +.|+.++.... .+..+      ..
T Consensus       104 ~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~  182 (334)
T 2p9w_A          104 SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGG  182 (334)
T ss_dssp             EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSS
T ss_pred             EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcc
Confidence            89988   66665554432            11123344458899988888888 88888887533 22221      11


Q ss_pred             CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       164 h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ...-.+.++++|++.+|+.....+.+.-+|+..
T Consensus       183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            122367999999999887776699999999874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.43  E-value=0.012  Score=51.51  Aligned_cols=148  Identities=13%  Similarity=0.124  Sum_probs=93.2

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeCC-----ccee-EEEccCCCEEEEEc-------CCeEEEEECCCcceEEeeec
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFGA-----VPNS-LEISRDGTTITVTH-------GSCVTFLDANSLELIKEHKV  120 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-----~~~~-v~~~~~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~  120 (231)
                      +|+.++.|+.+.-+|..+++.+-......     .+.+ -.+ .++ .+++..       ++.+.-+|..+.+.+..+..
T Consensus       123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            38888889999999999999887765432     1111 111 133 444432       57889999998888766554


Q ss_pred             cceeEE-------------------------------------EEEEecCCCCEEEEecCC----------------CeE
Q psy6442         121 PAQVHS-------------------------------------ASLLLNSERPIFVCGGED----------------LKM  147 (231)
Q Consensus       121 ~~~~~~-------------------------------------~~~~~~~~~~~~~~g~~d----------------~~i  147 (231)
                      ..+...                                     .....++...++..+..+                ..|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            321100                                     011123444455555433                479


Q ss_pred             EEEeCCCcceeeeccC--CC--------CCeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         148 YKFDYSTGAEIESFKG--HF--------GPIHCVKFS-PDG---ELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       148 ~~~d~~~~~~~~~~~~--h~--------~~V~~v~~s-pd~---~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ..+|.++|+.+..++.  |.        .++. +... .+|   ..++.++.+|.+.+.|..+|+.....+
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            9999999998766542  21        2222 2332 567   567889999999999999999765544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.02  Score=51.55  Aligned_cols=162  Identities=12%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe----CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc------ce
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP------AQ  123 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~  123 (231)
                      .|..+..++.+..+|..+++.. .+..    ...+.++...+++...+.+. +.+..++..+.........+      ..
T Consensus       419 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  496 (781)
T 3v9f_A          419 NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENF  496 (781)
T ss_dssp             CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSC
T ss_pred             CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccce
Confidence            3555666677888887765432 2211    23567777777776655555 67888887664433222111      12


Q ss_pred             eEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeecc---C-CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK---G-HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       124 ~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~---~-h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      +.  ++..++++.+.+. ....-+..+|..+++. ..+.   + ....|.++...++|++.++.. +|-|..||..+++.
T Consensus       497 i~--~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          497 VR--SIAQDSEGRFWIG-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             EE--EEEECTTCCEEEE-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred             eE--EEEEcCCCCEEEE-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence            33  3334667765554 3333477788765542 2222   1 235689999999998877655 66558899877653


Q ss_pred             eeeee---ccCCcccCCCCCCcccccc
Q psy6442         200 YGLWK---CIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       200 ~~~~~---~~~~~~~~~~~~~~~~~~~  223 (231)
                      . ...   +..+.....+..+.+|++|
T Consensus       572 ~-~~~~~~gl~~~~i~~i~~d~~g~lW  597 (781)
T 3v9f_A          572 Q-VFQRKEGLPNTHIRAISEDKNGNIW  597 (781)
T ss_dssp             E-EECGGGTCSCCCCCEEEECSSSCEE
T ss_pred             E-EccccCCCCCceEEEEEECCCCCEE
Confidence            2 222   2222233345556566554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.29  E-value=0.0086  Score=50.31  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcC-C-----eEEEEECCCcce-EEeeecccee
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-S-----CVTFLDANSLEL-IKEHKVPAQV  124 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----~i~~~d~~~~~~-~~~~~~~~~~  124 (231)
                      +..|+.+...+.|+.+|..++...........+..+++++++. ++++.. +     .+...+...... ..........
T Consensus       152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P  230 (433)
T 4hw6_A          152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGA  230 (433)
T ss_dssp             TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSB
T ss_pred             CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCC
Confidence            3556666555788889987766543333334689999999999 555432 1     233333221110 0111000111


Q ss_pred             EEEEEEecC-CCCEEEEecCCCeEEEEeCCCcceeeec-c-CCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q psy6442         125 HSASLLLNS-ERPIFVCGGEDLKMYKFDYSTGAEIESF-K-GHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTN  195 (231)
Q Consensus       125 ~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~-~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~  195 (231)
                      ..  +..++ ++.+.++-..+++|+.++..++.....+ . +....-..++|+|+++ ++++-...+.|+.++..
T Consensus       231 ~g--iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          231 KT--CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CC--CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CE--EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            11  22366 6666666667789999998766542222 1 1122234699999998 66767778889997754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.27  E-value=0.057  Score=44.45  Aligned_cols=148  Identities=7%  Similarity=0.014  Sum_probs=86.5

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSAS  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~~  128 (231)
                      .+++-...+.|.+.++........+... ..+..+++.|.+..++++..   ..|..++.............. ....+.
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            3444455567777777544332222222 46889999998887777642   467777765433222221111 123334


Q ss_pred             EEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         129 LLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       129 ~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      +  ++. +.+..+-....+|+.+++........+.........|++ ..+.++.+-...+.|..++..+|+....+.
T Consensus       253 v--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          253 I--DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             E--EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             E--eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            4  543 444455555678999987543322222223345678888 455677777888899999977777655543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.14  E-value=0.057  Score=41.93  Aligned_cols=185  Identities=12%  Similarity=0.179  Sum_probs=108.2

Q ss_pred             eeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEEccCCCEEE
Q psy6442          20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTIT   97 (231)
Q Consensus        20 ~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~   97 (231)
                      .+.|=.+.+..++++|+++.+              ++....++.|...|.. ++.++.+.+.  ..+..+++.+++.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L--------------~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTL--------------FSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEE--------------EEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEE--------------EEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEE
Confidence            344555678999998875432              4445667888888987 7888888765  3567888888887655


Q ss_pred             EEc-CCeEEEEECCCcce---EEeeeccc-------eeEEEEEEecCCCCEEEEecCCC--eEEEEeCC-Ccceeeec--
Q psy6442          98 VTH-GSCVTFLDANSLEL---IKEHKVPA-------QVHSASLLLNSERPIFVCGGEDL--KMYKFDYS-TGAEIESF--  161 (231)
Q Consensus        98 ~~~-~~~i~~~d~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~d~--~i~~~d~~-~~~~~~~~--  161 (231)
                      +.. .+.+.+++......   +.....+.       ....+  ..++.+..+..+.+..  .|+.|+-. ....+..+  
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGL--A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGL--AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEE--EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceE--EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc
Confidence            543 35677776544332   22232211       12333  3466665555554433  56666621 11111111  


Q ss_pred             -----cCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC--c------ccCCCCCCccccc
Q psy6442         162 -----KGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGLWKCIEG--G------LNNSLGLDSSGHL  222 (231)
Q Consensus       162 -----~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~  222 (231)
                           ..+...+.++++.|. +++++.....+.|-++|.. |++...+.-..+  +      -+-=|+++++|.+
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence                 123445789999996 5566777778888999965 666655543211  1      2234567776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.12  Score=46.52  Aligned_cols=141  Identities=7%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEE---Ee-CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee--c-cceeE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKL---EF-GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK--V-PAQVH  125 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~-~~~~~  125 (231)
                      ..|..|..++-|..+|..++......   .. ...+.++...+++...+.+.++.+..++..+.+......  . ...+.
T Consensus       374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR  453 (781)
T ss_dssp             SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred             CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence            34566666677888987654322111   11 245677887878877766666778888876544322211  1 11233


Q ss_pred             EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-----FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-----~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                        ++..++++.+.+. .. .-+..+|..+++........     ...|.++...++|++.+.....| |..||..+++
T Consensus       454 --~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~  526 (781)
T 3v9f_A          454 --VFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQL  526 (781)
T ss_dssp             --EEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred             --EEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence              3333556655444 34 45888887765432221111     35789999999998877554445 7778887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.99  E-value=0.062  Score=43.86  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             CCCCEEEEeCCCC-CceEEEEeC--------CcceeEEEcc--CCC-EEEEE-c---CCeEEEEECCCc--ce--EEeee
Q psy6442          60 EDKTVRLWDVSAS-AEVQKLEFG--------AVPNSLEISR--DGT-TITVT-H---GSCVTFLDANSL--EL--IKEHK  119 (231)
Q Consensus        60 ~D~ti~iwd~~~~-~~~~~~~~~--------~~~~~v~~~~--~~~-~~~~~-~---~~~i~~~d~~~~--~~--~~~~~  119 (231)
                      .+|.|.++|..+. .....+...        -.+..+.+.+  ++. .+++. +   +..+.+++....  ..  +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998743 122333322        1455666655  454 34443 2   346666654332  21  22222


Q ss_pred             ccc--eeEEEEEEecCCCCEEEEec-----------------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE
Q psy6442         120 VPA--QVHSASLLLNSERPIFVCGG-----------------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY  180 (231)
Q Consensus       120 ~~~--~~~~~~~~~~~~~~~~~~g~-----------------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l  180 (231)
                      .+.  ..+...+  .+++.+.++..                 ..+.++.+|..  + +..+...-...+.++||||++.|
T Consensus       161 g~~~~~pND~~v--~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 HKLLPSVNDIVA--VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CTTCSSEEEEEE--EETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCCCCceEEE--eCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEE
Confidence            211  2233333  56676665543                 13567777753  2 22222233457899999999754


Q ss_pred             -EEeeCCCcEEEEeCCC-CCee--eeeeccCCcccCCCCCCc-ccccc
Q psy6442         181 -ASGSEDGTLRLWQTNV-GKTY--GLWKCIEGGLNNSLGLDS-SGHLN  223 (231)
Q Consensus       181 -aS~s~d~~v~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~~  223 (231)
                       ++-+..+.|..|++.. ++..  ..+.  .+..+--+.++. +|..|
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEE
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEE
Confidence             5556788899999853 4322  2332  245555566776 47655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.021  Score=47.92  Aligned_cols=135  Identities=12%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             cceeEEEcc-CCCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC-C----CeEEEEeCCCc
Q psy6442          83 VPNSLEISR-DGTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE-D----LKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~-~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~~~d~~~~  155 (231)
                      .+..++++| ++..+++... ..|..+|.................  .+.+++++..+..... .    ..+..++.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~--~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR--TICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE--EEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc--eEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            567889997 4555655543 678888887654433322222222  3344788874444332 1    234444432 2


Q ss_pred             cee--eeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         156 AEI--ESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       156 ~~~--~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ...  ..+. .......++++| ++.++++-..++.|..++...++.......-....++-|+++++|.
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence            211  2222 123467889999 7888888778889999999876543343332335677788888876

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.074  Score=45.39  Aligned_cols=139  Identities=13%  Similarity=0.171  Sum_probs=81.7

Q ss_pred             CEEEEEeCC-CCEEEEeCCCCCceEEEEeC----CcceeEEE-------ccCCCEEEEEcCC--------eEEEEECCC-
Q psy6442          53 TRLISCAED-KTVRLWDVSASAEVQKLEFG----AVPNSLEI-------SRDGTTITVTHGS--------CVTFLDANS-  111 (231)
Q Consensus        53 ~~l~s~s~D-~ti~iwd~~~~~~~~~~~~~----~~~~~v~~-------~~~~~~~~~~~~~--------~i~~~d~~~-  111 (231)
                      ..|+.+..+ +.|++.|+..+.....+...    ..+..+++       ++++..++++...        .+.+++... 
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            345555443 56888888776655444332    24789999       9999977765432        255665333 


Q ss_pred             cceE-----Eee-eccceeEEEEEEecC-CCCEEEEecCCCeEEEEeCC-------Ccce-----------eeec--cCC
Q psy6442         112 LELI-----KEH-KVPAQVHSASLLLNS-ERPIFVCGGEDLKMYKFDYS-------TGAE-----------IESF--KGH  164 (231)
Q Consensus       112 ~~~~-----~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~~d~~-------~~~~-----------~~~~--~~h  164 (231)
                      ....     +.. ... ....+  ..++ ++.++++-...+.|+.+|+.       ++..           ...+  .+.
T Consensus       232 G~~~~~~~~~~v~~~~-~p~gi--avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~  308 (496)
T 3kya_A          232 GTFDDRSDIQLIAAYK-QCNGA--TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD  308 (496)
T ss_dssp             SCCSTTSCEEEEEEES-CCCCE--EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred             CceeecccceeeccCC-CceEE--EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence            1111     111 111 12222  3366 56666677778899999987       4432           1111  122


Q ss_pred             CCCeeEEEEcCCCC-EEEEeeCCCcEEEEeC
Q psy6442         165 FGPIHCVKFSPDGE-LYASGSEDGTLRLWQT  194 (231)
Q Consensus       165 ~~~V~~v~~spd~~-~laS~s~d~~v~iwd~  194 (231)
                      ......++|+|+|+ ++++=+....|+.++.
T Consensus       309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            33457899999998 5666677888988554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.78  E-value=0.14  Score=40.70  Aligned_cols=156  Identities=10%  Similarity=-0.039  Sum_probs=88.1

Q ss_pred             CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCC----cceEEeeecc-ceeEEEEEEecC
Q psy6442          61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANS----LELIKEHKVP-AQVHSASLLLNS  133 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~----~~~~~~~~~~-~~~~~~~~~~~~  133 (231)
                      ...|+..|+........+.....+..+++.+.+..++++.  .+.|..++...    .......... .....+.+  ++
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav--d~   86 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV--DW   86 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE--ET
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE--ee
Confidence            3568888988776655554445678999999877777654  46888888764    1111111111 12223333  43


Q ss_pred             -CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCC-CcEEEEeCCCCCeeeeeeccCCcc
Q psy6442         134 -ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSED-GTLRLWQTNVGKTYGLWKCIEGGL  210 (231)
Q Consensus       134 -~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d-~~v~iwd~~~~~~~~~~~~~~~~~  210 (231)
                       .+.+.++-....+|.++++........+.........+++.|.+. ++.+-... +.|...+.. |+....+-...-..
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~  165 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW  165 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence             344455556678899988754332222222335678999999654 44544333 677777764 33332222123356


Q ss_pred             cCCCCCCcc
Q psy6442         211 NNSLGLDSS  219 (231)
Q Consensus       211 ~~~~~~~~~  219 (231)
                      ++-|+++++
T Consensus       166 P~gla~d~~  174 (316)
T 1ijq_A          166 PNGITLDLL  174 (316)
T ss_dssp             EEEEEEETT
T ss_pred             ceEEEEecc
Confidence            777777753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.74  E-value=0.17  Score=40.95  Aligned_cols=148  Identities=6%  Similarity=-0.016  Sum_probs=86.2

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~  127 (231)
                      ..+++-...+.|.+.++........+.. ...+..+++.|.+..++++..   ..|..++.............. ....+
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  208 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  208 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred             eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence            3344555567788888765443222221 246889999998777776642   567777765433222211111 22333


Q ss_pred             EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      ++  ++.+. +..+-....+|+.+++........+.........+++ ..+.++.+-...+.|...+..+|+....+
T Consensus       209 a~--d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          209 TI--DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EE--eCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            44  65444 4445455678999987543222222223445678888 45667777778888988887677655444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.70  E-value=0.056  Score=47.70  Aligned_cols=65  Identities=17%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CCCCEEEEecCCC-----------eEEEEeCCCcceeeec--cCCCCCe-eEEEEcCCCCEEEEeeCC-----------C
Q psy6442         133 SERPIFVCGGEDL-----------KMYKFDYSTGAEIESF--KGHFGPI-HCVKFSPDGELYASGSED-----------G  187 (231)
Q Consensus       133 ~~~~~~~~g~~d~-----------~i~~~d~~~~~~~~~~--~~h~~~V-~~v~~spd~~~laS~s~d-----------~  187 (231)
                      .++.+++.|+.+.           .+.+||..+..-....  ..+.... .++...|++++++.++.+           .
T Consensus       409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~  488 (656)
T 1k3i_A          409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF  488 (656)
T ss_dssp             TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred             CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence            4677888887532           6778887665422221  1122222 455677899999999864           5


Q ss_pred             cEEEEeCCCC
Q psy6442         188 TLRLWQTNVG  197 (231)
Q Consensus       188 ~v~iwd~~~~  197 (231)
                      .+.+||..+.
T Consensus       489 ~v~~ydp~t~  498 (656)
T 1k3i_A          489 TPEIYVPEQD  498 (656)
T ss_dssp             CCEEEEGGGT
T ss_pred             ceEEEcCCCC
Confidence            6899998764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.70  E-value=0.055  Score=48.64  Aligned_cols=170  Identities=11%  Similarity=0.036  Sum_probs=84.2

Q ss_pred             CceeeeccCC-CeEee-eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC-----CCEEEEeCCCCCce--E
Q psy6442           6 KPMLRQGDTG-DWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED-----KTVRLWDVSASAEV--Q   76 (231)
Q Consensus         6 ~~~~~~~~~g-~~i~~-l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D-----~ti~iwd~~~~~~~--~   76 (231)
                      ++++++..+| +.+.. +..   ....+.|+||++.++..               ..|     ..|..+++.++...  .
T Consensus       202 ~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~---------------~~d~~~~~~~v~~~~lgt~~~~~~l  263 (751)
T 2xe4_A          202 TIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYV---------------TKDETLRENKVWRHVMGKLQSEDVC  263 (751)
T ss_dssp             EEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEE---------------EECTTCCEEEEEEEETTSCGGGCEE
T ss_pred             EEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEE---------------EECCCCCCCEEEEEECCCCchhcEE
Confidence            4777777777 53221 211   12356788876554332               222     25777888776432  2


Q ss_pred             EEEe--CCcceeEEEccCCCEEEEEc----CCeEEEEECCCcc-eE--EeeeccceeEEEEEEecCCCCEEEEecCC---
Q psy6442          77 KLEF--GAVPNSLEISRDGTTITVTH----GSCVTFLDANSLE-LI--KEHKVPAQVHSASLLLNSERPIFVCGGED---  144 (231)
Q Consensus        77 ~~~~--~~~~~~v~~~~~~~~~~~~~----~~~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---  144 (231)
                      ....  ......+.++||++.++...    ...+.++|..+.. ..  +..............++.++.+++....+   
T Consensus       264 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~  343 (751)
T 2xe4_A          264 LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAV  343 (751)
T ss_dssp             EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCT
T ss_pred             EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCC
Confidence            2221  12345778999999876532    2467778876542 11  21111110001112112233344444332   


Q ss_pred             -CeEEEEeCCCcceeee-ccCCCC--CeeEEEEcCCCCEEEEeeCCCcEEE--EeC
Q psy6442         145 -LKMYKFDYSTGAEIES-FKGHFG--PIHCVKFSPDGELYASGSEDGTLRL--WQT  194 (231)
Q Consensus       145 -~~i~~~d~~~~~~~~~-~~~h~~--~V~~v~~spd~~~laS~s~d~~v~i--wd~  194 (231)
                       ..|+.++..++..... +..|..  .+..+.+. .+.++++...++..+|  +++
T Consensus       344 ~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          344 NHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence             4788888764322222 222333  34455554 2346677777886554  454

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.67  E-value=0.21  Score=41.06  Aligned_cols=141  Identities=9%  Similarity=0.002  Sum_probs=80.8

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL  130 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  130 (231)
                      +++-...+.|..+++..+.....+... ..+..+++.+.+..++++.  .+.|.+.+............. .....+.+ 
T Consensus       131 y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav-  209 (386)
T 3v65_B          131 FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL-  209 (386)
T ss_dssp             EEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE-
T ss_pred             EEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE-
Confidence            444445677888887765433322222 3578899998777776654  357777776543322222211 12233333 


Q ss_pred             ecCCCC-EEEEecCC-CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy6442         131 LNSERP-IFVCGGED-LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       131 ~~~~~~-~~~~g~~d-~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~  197 (231)
                       +|.+. +..+-... .+|+.+++............-...+.|+++|++ +++.+-+..+.|..+++...
T Consensus       210 -dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          210 -HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             -ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             -EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence             55444 44444344 788888875432222222233457899999865 55666677788999987543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.58  E-value=0.22  Score=40.27  Aligned_cols=140  Identities=9%  Similarity=0.012  Sum_probs=82.2

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASL  129 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  129 (231)
                      .+++-...+.|..+++........+... ..+..+++.+.+..++++.  .+.|...+............. .....+.+
T Consensus        87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav  166 (349)
T 3v64_C           87 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  166 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred             EEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence            3444445677888887765433333222 4578899998777776653  357888887654322222111 12233333


Q ss_pred             EecCC-CCEEEEecCC-CeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCC
Q psy6442         130 LLNSE-RPIFVCGGED-LKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       130 ~~~~~-~~~~~~g~~d-~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~  196 (231)
                        +|. +.+..+-... .+|+.+++.... ...+ ...-...+.++++|++ +++.+-+..+.|..+++..
T Consensus       167 --dp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          167 --HPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             --ETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             --ecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence              654 4444444444 789888875332 2222 2223457899999865 4556666778899998754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.38  E-value=0.28  Score=39.17  Aligned_cols=139  Identities=10%  Similarity=0.023  Sum_probs=79.1

Q ss_pred             EEEEeCCCCEEEEeCCCCCceE-EEEe-CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQ-KLEF-GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASL  129 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  129 (231)
                      +.+=...+.|..+++..+.... .+.. -..+..+++.+.+..++++.  .+.|.+++............. .....+.+
T Consensus        50 yw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giav  129 (318)
T 3sov_A           50 YWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL  129 (318)
T ss_dssp             EEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEE
Confidence            4454556778888876553222 2222 24577899998777776653  468888887653322221111 12233333


Q ss_pred             EecCC-CCEEEEe-cCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCC
Q psy6442         130 LLNSE-RPIFVCG-GEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       130 ~~~~~-~~~~~~g-~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~  196 (231)
                        ++. +.+..+- +...+|+.+++.- .....+ ...-...+.++++|++ +++.+=+..+.|..+++..
T Consensus       130 --dp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          130 --DPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             --EGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             --eCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence              554 3333333 2357888888753 222222 2223456899999965 4556667788899998853

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.23  E-value=0.07  Score=47.61  Aligned_cols=137  Identities=12%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             EEeCCCCEEEEeCCC----CCceEEEEe-CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442          57 SCAEDKTVRLWDVSA----SAEVQKLEF-GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSAS  128 (231)
Q Consensus        57 s~s~D~ti~iwd~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  128 (231)
                      +-...+.|+.+++..    ......+.. ...+..+++.+.+..|+++.  .+.|.+++............. .....+.
T Consensus       423 sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gia  502 (699)
T 1n7d_A          423 SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV  502 (699)
T ss_dssp             CCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred             EecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence            333456788887764    111111111 12466788886666666653  467888887654332222211 1122223


Q ss_pred             EEecCCCC-EEEEecC-CCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q psy6442         129 LLLNSERP-IFVCGGE-DLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPD-GELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       129 ~~~~~~~~-~~~~g~~-d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~  196 (231)
                      +  ++.+. ++.+-.. ..+|+.+++.... ...+ ...-...+.|+|+|+ ++++++-+..+.|..+++..
T Consensus       503 v--Dp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          503 V--DPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             C--CSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             E--ccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            3  55433 3333322 2678777764322 2222 122234678999997 56667777888899999854

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.20  E-value=0.35  Score=38.44  Aligned_cols=175  Identities=11%  Similarity=0.060  Sum_probs=99.0

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC---CceEEE-E
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS---AEVQKL-E   79 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~---~~~~~~-~   79 (231)
                      ...|+..+..+++....+.. -....+++|.+.++.              .+++-...+.|..+++...   .....+ .
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~--------------ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNR--------------IYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTE--------------EEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCE--------------EEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            45677777776665544332 345677888765433              2344445677888887651   222222 2


Q ss_pred             eC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCC-CCEEEEecCC-CeEEEEeCC
Q psy6442          80 FG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSE-RPIFVCGGED-LKMYKFDYS  153 (231)
Q Consensus        80 ~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~g~~d-~~i~~~d~~  153 (231)
                      .. ..+..+++.+.+..++++.  .+.|.+++............. .....+.  .+|. +.++.+.... ++|+.+++.
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ia--vdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV--VDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEE--EETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEE--eCCCCCEEEEEccCCCCeEEEEcCC
Confidence            11 4578899988777776653  468888887654332222211 1223333  3654 4444443333 688888874


Q ss_pred             Ccceeeec-cCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q psy6442         154 TGAEIESF-KGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       154 ~~~~~~~~-~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~  196 (231)
                       +.....+ ...-...+.++++|++. ++.+-+..+.|..+|+..
T Consensus       152 -G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          152 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             -SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence             3322222 22234578999998754 556666778899999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.15  E-value=0.13  Score=43.04  Aligned_cols=136  Identities=10%  Similarity=0.075  Sum_probs=77.6

Q ss_pred             cceeEEEccC--CCEEEEEcC-CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC----CeEEEEeCCCc
Q psy6442          83 VPNSLEISRD--GTTITVTHG-SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED----LKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~--~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~~i~~~d~~~~  155 (231)
                      .+..+++.|+  ...++++.. ..|+.++..+...............  +.+++++.++++....    ..+..++...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~g--iavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCAD--VNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEE--EEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccE--EEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            4678999984  445655543 7888888866554433322222333  3347777755554321    12444443222


Q ss_pred             cee-eeccCCCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCe-eeeeeccCCcccCCCCCCcccc
Q psy6442         156 AEI-ESFKGHFGPIHCVKFSP-DGELYASGSEDGTLRLWQTNVGKT-YGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       156 ~~~-~~~~~h~~~V~~v~~sp-d~~~laS~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ... ..+. .......++++| ++.++++-..++.|+.++..+++. ......-...+...|+++++|.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence            110 1111 223467789999 788888777888999999987876 3333322233333477777664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.05  E-value=0.23  Score=41.53  Aligned_cols=106  Identities=14%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             EEccCCCEEEEEcCCeEEEEECCCcceEEeeecc----c-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc------
Q psy6442          88 EISRDGTTITVTHGSCVTFLDANSLELIKEHKVP----A-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA------  156 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~------  156 (231)
                      ..+.++..+++..++.++..+..+....+..+.+    . .+..  +..+|.|.+++.-+ +..|.+..+..+.      
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~q--lvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFH--VISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCE--EEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeE--EEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence            3456677777778888888887644334444443    2 2333  33489999888764 4466666665221      


Q ss_pred             ------eeeeccC------CCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCC
Q psy6442         157 ------EIESFKG------HFGPIHCVKFSPD---GELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       157 ------~~~~~~~------h~~~V~~v~~spd---~~~laS~s~d~~v~iwd~~~  196 (231)
                            ....+.-      ...+|..+.|+|-   +..|+.-..|++||+||+..
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                  1112211      2578999999995   46899999999999999976

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.92  E-value=0.17  Score=45.10  Aligned_cols=148  Identities=9%  Similarity=0.024  Sum_probs=82.3

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVPA-QVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~-~~~~~  127 (231)
                      ..+++-...+.|.+.++........+.. ...+..+++.|.+..++++..   +.|..+++............. ....+
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl  545 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  545 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE
Confidence            3344445567888888765443322222 246789999997776666542   456665543322111111111 12223


Q ss_pred             EEEecCC-CCEEEEecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         128 SLLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       128 ~~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+  +++ +.+.++-....+|+.+++........+.  +.......|++..+ .++.+....+.|..++..+|+....+
T Consensus       546 av--d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          546 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EE--CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EE--eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            33  654 4455555566789999885422211111  12233456667655 57777788899999998888766554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.89  E-value=0.47  Score=37.27  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecC--CCeEEEEeCCCcce
Q psy6442          81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGE--DLKMYKFDYSTGAE  157 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--d~~i~~~d~~~~~~  157 (231)
                      ...+..+++++++...++. ..+.|..+|.... .......+.....  +...+++.++++...  ...|..++..+++.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~g--ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSG--LAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEE--EEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCcee--EEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            4567889999998855544 3578888887653 3333333333333  334778876665433  23577788777664


Q ss_pred             eeecc-CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q psy6442         158 IESFK-GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       158 ~~~~~-~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~  197 (231)
                      ..... ........++..+++..+++-..++.|..+|...+
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            32211 12233456666677666776667888888897764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.67  E-value=0.44  Score=36.90  Aligned_cols=111  Identities=12%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             CcceeEEEccCCCEEEE-E-cCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce
Q psy6442          82 AVPNSLEISRDGTTITV-T-HGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE  157 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~  157 (231)
                      ..+..+++.|++..+++ . ..+.|..+|.. .+.++.+...  .....+.+  .+++.++++.-.+..+.++++.....
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY--IGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            35778999998776665 3 34578888887 6677776543  23333333  56777666655667888887754321


Q ss_pred             ---eeec--c----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         158 ---IESF--K----GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       158 ---~~~~--~----~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                         +...  .    ......-.++|+|+++.|..+.+.....||.+.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence               1221  1    123345789999998766666655555666653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.62  E-value=0.83  Score=38.19  Aligned_cols=142  Identities=18%  Similarity=0.234  Sum_probs=89.9

Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCC-----cceeEEEccCCCEEEEEcCCeEEEEECCCcc-----------
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-----VPNSLEISRDGTTITVTHGSCVTFLDANSLE-----------  113 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~-----------  113 (231)
                      +++..++.+- ++.||.-++..+..-+.+..+.     .+..+..+|+|.++++.....+.+..+....           
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            4566677664 5888888887655555666542     5778999999999999888899998876221           


Q ss_pred             -eEEeeecc-------ceeEEEEEEecCC---CCEEEEecCCCeEEEEeCCCccee-eec---------cCCCCCeeEEE
Q psy6442         114 -LIKEHKVP-------AQVHSASLLLNSE---RPIFVCGGEDLKMYKFDYSTGAEI-ESF---------KGHFGPIHCVK  172 (231)
Q Consensus       114 -~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~g~~d~~i~~~d~~~~~~~-~~~---------~~h~~~V~~v~  172 (231)
                       ..+.+...       .++..  +.++|-   +..++.=..|..|++||+...... ..+         ..+...|.+++
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~q--VlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKK--VLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEE--EEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeE--EEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence             11222221       22333  334654   446777788999999999753211 122         12335688899


Q ss_pred             EcCCCCEE--EEeeCCCcEEEEeC
Q psy6442         173 FSPDGELY--ASGSEDGTLRLWQT  194 (231)
Q Consensus       173 ~spd~~~l--aS~s~d~~v~iwd~  194 (231)
                      |.+++-.|  ++.++.|.|.-...
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEESS
T ss_pred             EcCCCcEEEEEecCCCCCEEEECC
Confidence            99977533  33456676654443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.58  E-value=1.1  Score=39.38  Aligned_cols=146  Identities=5%  Similarity=-0.052  Sum_probs=85.3

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      .+++-...+.|.+.++........+. --..+..+++.|....++.+.   ...|...+............-.....+.+
T Consensus        94 LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Glal  173 (628)
T 4a0p_A           94 LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTI  173 (628)
T ss_dssp             EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred             EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence            34444455678888876443322221 124688999999777777765   34677776654332222221112233333


Q ss_pred             EecCCCCE-EEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         130 LLNSERPI-FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       130 ~~~~~~~~-~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                        ++.+.. ..+-....+|+.+|+..... ..+.........+++.. +.++.+-...+.|...|..+|+....+
T Consensus       174 --D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          174 --DYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             --ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             --ccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence              655444 44445567899998854332 23333334456788876 567777777899999998888765444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.57  E-value=0.76  Score=37.35  Aligned_cols=139  Identities=10%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCC----C---EEEEE--c--CCeEEEEECC--CcceEEeee
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG----T---TITVT--H--GSCVTFLDAN--SLELIKEHK  119 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~---~~~~~--~--~~~i~~~d~~--~~~~~~~~~  119 (231)
                      ..++.....+-+.+||+ .++.+..+.. ..++.|...|+-    +   .++++  .  .+.+.++++.  +.. +....
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence            45666777788999999 7888777654 566777766632    2   23343  2  4689999653  322 33331


Q ss_pred             c---c-----ceeEEEEEEecC-CCC-EEEEecCCCeEEEEeCC-------CcceeeeccCCCCCeeEEEEcCCCCEEEE
Q psy6442         120 V---P-----AQVHSASLLLNS-ERP-IFVCGGEDLKMYKFDYS-------TGAEIESFKGHFGPIHCVKFSPDGELYAS  182 (231)
Q Consensus       120 ~---~-----~~~~~~~~~~~~-~~~-~~~~g~~d~~i~~~d~~-------~~~~~~~~~~h~~~V~~v~~spd~~~laS  182 (231)
                      .   +     .....+++.-++ .+. ++.....++.+..|++.       +.+.+++|.- ...+-.+...+....|..
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence            1   1     222223443244 343 45566777999888872       3355666653 357888999998888888


Q ss_pred             eeCCCcEEEEeCC
Q psy6442         183 GSEDGTLRLWQTN  195 (231)
Q Consensus       183 ~s~d~~v~iwd~~  195 (231)
                      +-++.-|..++.+
T Consensus       197 ~eEd~GIw~~da~  209 (355)
T 3amr_A          197 AEEDEAIWKFSAE  209 (355)
T ss_dssp             EETTTEEEEEECS
T ss_pred             ecccceEEEEeCC
Confidence            8888777666754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.11  E-value=0.61  Score=35.41  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             CEEEEEeCCCCEEEEeCCCCC------ceEEEEeC--CcceeEEEccCCCEEEEEcCCeEEEEECCCcce------EEee
Q psy6442          53 TRLISCAEDKTVRLWDVSASA------EVQKLEFG--AVPNSLEISRDGTTITVTHGSCVTFLDANSLEL------IKEH  118 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~  118 (231)
                      ..|+....| +++.=-..+..      ....+--.  .....++++|++.+-.+ .++.+...+..+...      -..+
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I   82 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI   82 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence            346666666 54443333332      12233221  35679999999986666 666666666533111      0111


Q ss_pred             ec-c-ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee-----eec--cCCCCCeeEEEEcCCCCEEEEeeCCCcE
Q psy6442         119 KV-P-AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI-----ESF--KGHFGPIHCVKFSPDGELYASGSEDGTL  189 (231)
Q Consensus       119 ~~-~-~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~-----~~~--~~h~~~V~~v~~spd~~~laS~s~d~~v  189 (231)
                      .. . ....  .+.+++++.+.++  .|+.|+.++..+...-     .+.  .+-=..+..|.|.|+|.+.|..  |+.+
T Consensus        83 G~~Gw~~F~--a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           83 GNGGWNQFQ--FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             ECSCGGGCS--EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             cccccccce--EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            10 0 0112  3345888887777  5699999886442211     011  1011467999999999988877  6664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.10  E-value=0.99  Score=35.93  Aligned_cols=109  Identities=16%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce-
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE-  157 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~-  157 (231)
                      ..+..+.+.+++..+++..++.+.+.+....+.......+   .......+...+++.+++.+. ++.++. ....++. 
T Consensus       205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~-S~DgG~tW  282 (327)
T 2xbg_A          205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC-SQDGGQTW  282 (327)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE-ESSTTSSC
T ss_pred             CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE-eCCCCccc
Confidence            4567788888888777777776665532222222222222   111112233355666666554 565533 2222322 


Q ss_pred             --eeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         158 --IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       158 --~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                        +.....+...+.++.|.+++. ++.++.+|.|.-++
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence              221112345678899986654 55667788776555

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.80  E-value=1.7  Score=37.07  Aligned_cols=148  Identities=11%  Similarity=0.115  Sum_probs=86.0

Q ss_pred             CCEEEEEeCCCCEEEEeCC-------CCCc-----------eEE-EEe--CCcceeEEEccCCCEEEEEc--CCeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVS-------ASAE-----------VQK-LEF--GAVPNSLEISRDGTTITVTH--GSCVTFLD  108 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~-------~~~~-----------~~~-~~~--~~~~~~v~~~~~~~~~~~~~--~~~i~~~d  108 (231)
                      +..+++-..++.|..+|+.       ++..           ... ...  ...++.++++|++..++++.  ...|+.++
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence            4445566677889999987       4543           112 223  24578999999999777663  45777755


Q ss_pred             C--CCcce-----EEee-e-------------ccceeEEEEEEec------CCCCEEEEecCCCeEEEEeCCCcceeeec
Q psy6442         109 A--NSLEL-----IKEH-K-------------VPAQVHSASLLLN------SERPIFVCGGEDLKMYKFDYSTGAEIESF  161 (231)
Q Consensus       109 ~--~~~~~-----~~~~-~-------------~~~~~~~~~~~~~------~~~~~~~~g~~d~~i~~~d~~~~~~~~~~  161 (231)
                      .  .....     +... .             +..+...+.. .+      +.+.+.++-....+|+.++ .++. +.++
T Consensus       339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti  415 (496)
T 3kya_A          339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY  415 (496)
T ss_dssp             EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred             cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence            3  32211     1110 0             0011101122 11      4556666666778899998 3453 3333


Q ss_pred             cCC------------------------CCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         162 KGH------------------------FGPIHCVKFSPD-GELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       162 ~~h------------------------~~~V~~v~~spd-~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      -|.                        -.....|+++++ +.++++=+.+..||.+++......+.
T Consensus       416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence            211                        123678999997 88888888889999999877665543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.76  E-value=1.4  Score=36.16  Aligned_cols=141  Identities=11%  Similarity=0.030  Sum_probs=77.9

Q ss_pred             EEEEeCCCCEEEEeCCCC----CceEEEE-eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEE
Q psy6442          55 LISCAEDKTVRLWDVSAS----AEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHS  126 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~  126 (231)
                      +.+-...+.|..+++...    .....+. ....+..+++.+.+..++++.  .+.|.+.+............. .....
T Consensus       127 ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~  206 (400)
T 3p5b_L          127 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRA  206 (400)
T ss_dssp             EEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEE
T ss_pred             EEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcce
Confidence            344444567777777542    1222222 124578899998667776653  457888887654433333222 12333


Q ss_pred             EEEEecCCCC-EEEEe-cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442         127 ASLLLNSERP-IFVCG-GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       127 ~~~~~~~~~~-~~~~g-~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~  197 (231)
                      +.+  +|.+. ++.+- +....|+..++............-...+.|+++|++. ++.+=+..+.|..+|+...
T Consensus       207 iav--dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          207 IVV--DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEE--ETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEE--ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            333  65444 33443 2246788888754332222222335678999998765 4555567788999987543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.60  E-value=1.6  Score=35.92  Aligned_cols=148  Identities=8%  Similarity=0.011  Sum_probs=86.0

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      ..+++-...+.|.+.++........+.. ...+..+++.|.+..++++.   ...|...+............. .....+
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEE
Confidence            3344445567788888765544333332 24588999999877777764   246777776543332222211 122333


Q ss_pred             EEEecCCCCEEE-EecCCCeEEEEeCCCcceeeecc--CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         128 SLLLNSERPIFV-CGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       128 ~~~~~~~~~~~~-~g~~d~~i~~~d~~~~~~~~~~~--~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+  ++.+..+. +-....+|+.+|+..........  +.......+++ ..+.++.+-...+.|..+|..+|+....+
T Consensus       252 av--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          252 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EE--ETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EE--EeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            44  65444444 44556789999885432211112  22334567777 34467777788889999997777665444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.49  E-value=0.74  Score=40.49  Aligned_cols=114  Identities=12%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             ceeEEEcc-CCCEEEEEc-C-----------CeEEEEECCCcceEEe--eeccceeEEEEEEecCCCCEEEEecC-CCeE
Q psy6442          84 PNSLEISR-DGTTITVTH-G-----------SCVTFLDANSLELIKE--HKVPAQVHSASLLLNSERPIFVCGGE-DLKM  147 (231)
Q Consensus        84 ~~~v~~~~-~~~~~~~~~-~-----------~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i  147 (231)
                      ...+++.+ +++.++.+. +           ..+.+||..+......  ...+....+.......++.+++.|+. +..+
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            34666776 666555432 1           1567788766543222  21111111111223567888888884 4579


Q ss_pred             EEEeCCCcce--eeeccCCCCCeeEEEEcCCCCEEEEee-CC-----CcEEEEeCCCCC
Q psy6442         148 YKFDYSTGAE--IESFKGHFGPIHCVKFSPDGELYASGS-ED-----GTLRLWQTNVGK  198 (231)
Q Consensus       148 ~~~d~~~~~~--~~~~~~h~~~V~~v~~spd~~~laS~s-~d-----~~v~iwd~~~~~  198 (231)
                      ++||..+.+-  +..+.... .-.+++..+++++++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9999876542  22222111 123566778999999998 44     579999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.47  E-value=1.5  Score=34.93  Aligned_cols=147  Identities=8%  Similarity=-0.001  Sum_probs=84.6

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      ..+++-...+.|.+.++........+. ....+..+++.|.+..++.+.   ...|..++............. .....+
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            334454556778888876543322221 224688999999877777664   357777776543222111111 122333


Q ss_pred             EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      ++  ++++. +..+-....+|+.+|+..........+.......+++.. +.++.+-...+.|..++..+|+....
T Consensus       172 av--d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          172 TL--DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EE--eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEE
Confidence            33  65444 444445567899998853222111222344567788864 45667777888899999887775443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.39  E-value=2.4  Score=37.13  Aligned_cols=144  Identities=9%  Similarity=0.020  Sum_probs=79.7

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEeeecc-ceeEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKEHKVP-AQVHSAS  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  128 (231)
                      .+++-...+.|.+.++........+. .-..|..+++.|....++.+.   ...|...+............. .....+.
T Consensus        98 ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla  177 (619)
T 3s94_A           98 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT  177 (619)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEE
Confidence            34444556788888876544322221 234688999999877777664   246666665433222111111 1223333


Q ss_pred             EEecCC-CCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         129 LLLNSE-RPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       129 ~~~~~~-~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      +  ++. +.+..+-....+|+.+|+..........+.......|++.++ .++.+-...+.|...|..+|+..
T Consensus       178 l--d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          178 L--DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             E--ETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             E--EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            3  554 444445455678999888543322222222223457788776 66777778889999998887654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.36  E-value=2.9  Score=37.87  Aligned_cols=148  Identities=9%  Similarity=0.029  Sum_probs=85.6

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcC---CeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHG---SCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      ..+++-...+.|.+.++........+.. ...+..+++.|....|+++..   ..|...++............ .....+
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GL  563 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  563 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEE
Confidence            3444555567888888865443333322 246889999998777777642   46777777654332222222 123333


Q ss_pred             EEEecCCCC-EEEEecCCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         128 SLLLNSERP-IFVCGGEDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       128 ~~~~~~~~~-~~~~g~~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+  ++... +.++-....+|+.+++........+..  .-.....|++..+ +++.+-...+.|...|..+|+....+
T Consensus       564 av--D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          564 TL--DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EE--ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            44  54444 444444557899988854332222222  2233456777443 56777778888988888788765544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.30  E-value=1.7  Score=35.02  Aligned_cols=141  Identities=16%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             EEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe------CCcceeEEEccC---CCEEEE
Q psy6442          28 VWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRD---GTTITV   98 (231)
Q Consensus        28 V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~------~~~~~~v~~~~~---~~~~~~   98 (231)
                      -+.+.|.|+|.                |+.+..++.|++++  +++.......      ...+..++++|+   +..+++
T Consensus        33 P~~ia~~pdG~----------------l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv   94 (352)
T 2ism_A           33 PWALAFLPDGG----------------MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA   94 (352)
T ss_dssp             EEEEEECTTSC----------------EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             ceEEEEcCCCe----------------EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence            46777777654                34444567888887  3332111111      245789999998   566666


Q ss_pred             EcC-------CeEEEEECCCcce-----E-Eeeec-ccee-EEEEEEecCCCCEEEEecC-------------CCeEEEE
Q psy6442          99 THG-------SCVTFLDANSLEL-----I-KEHKV-PAQV-HSASLLLNSERPIFVCGGE-------------DLKMYKF  150 (231)
Q Consensus        99 ~~~-------~~i~~~d~~~~~~-----~-~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~-------------d~~i~~~  150 (231)
                      +..       ..|..++......     + ..... .... ....+.+.+++.+.++-+.             .++|..+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri  174 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRL  174 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred             EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence            532       5666676553211     1 11110 0000 0112344778876666432             2577777


Q ss_pred             eCCCc------------ceeeec-cCCCCCeeEEEEcC-CCCEEEEeeCCC
Q psy6442         151 DYSTG------------AEIESF-KGHFGPIHCVKFSP-DGELYASGSEDG  187 (231)
Q Consensus       151 d~~~~------------~~~~~~-~~h~~~V~~v~~sp-d~~~laS~s~d~  187 (231)
                      +....            .....+ .+|. ....++|+| +++++++-...+
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC-
T ss_pred             cCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCC
Confidence            76420            011111 2333 356789999 677766654333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.02  E-value=3.4  Score=37.41  Aligned_cols=143  Identities=10%  Similarity=0.004  Sum_probs=80.0

Q ss_pred             EEEEEeCCCCEEEEeCCCC----CceEEEE-eCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeE
Q psy6442          54 RLISCAEDKTVRLWDVSAS----AEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVH  125 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~  125 (231)
                      .+++-...+.|+.+++...    .....+. ....+..+++.+.+..|+++.  .+.|.+.++............ ....
T Consensus       438 lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~  517 (791)
T 3m0c_C          438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR  517 (791)
T ss_dssp             EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE
T ss_pred             eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcc
Confidence            3444445566777777542    1122222 124678999998888887764  468888887654433222222 1233


Q ss_pred             EEEEEecCCCC-EEEEec-CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCC
Q psy6442         126 SASLLLNSERP-IFVCGG-EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       126 ~~~~~~~~~~~-~~~~g~-~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~~  198 (231)
                      .+.+  ++... ++.+-. ...+|+..++........+...-...+.|+++|.+ +++.+=...+.|...++....
T Consensus       518 gIaV--Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          518 AIVV--DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEE--ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEE--ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            3333  66533 434432 23678888875433222223333568899999765 455555667788888885443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.87  E-value=3.1  Score=33.53  Aligned_cols=137  Identities=10%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             cEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-e------CCcceeEEEccC---CCEE
Q psy6442          27 CVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-F------GAVPNSLEISRD---GTTI   96 (231)
Q Consensus        27 ~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~------~~~~~~v~~~~~---~~~~   96 (231)
                      .-+.++|.|+|.                |+.+..++.|+++| .+++  ..+. .      ...+..++++|+   +..+
T Consensus        30 ~P~~ia~~pdG~----------------l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l   90 (354)
T 3a9g_A           30 VPWSIAPLGGGR----------------YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWV   90 (354)
T ss_dssp             CEEEEEEEETTE----------------EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CCeEEEEcCCCe----------------EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEE
Confidence            446777777653                44455568888886 3443  2221 1      235789999998   5566


Q ss_pred             EEEcC---------CeEEEEECCCc--c-----eE-EeeeccceeEEEEEEecCCCCEEEEecC-------------CCe
Q psy6442          97 TVTHG---------SCVTFLDANSL--E-----LI-KEHKVPAQVHSASLLLNSERPIFVCGGE-------------DLK  146 (231)
Q Consensus        97 ~~~~~---------~~i~~~d~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------d~~  146 (231)
                      +++..         ..|..++....  .     .+ ........-....+.+.+++.+.++-+.             .++
T Consensus        91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~  170 (354)
T 3a9g_A           91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK  170 (354)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred             EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence            55431         45666665432  1     11 1111100000112334778877666432             256


Q ss_pred             EEEEeCCCc---------ceeeeccCCCCCeeEEEEcC-CCCEEEEee
Q psy6442         147 MYKFDYSTG---------AEIESFKGHFGPIHCVKFSP-DGELYASGS  184 (231)
Q Consensus       147 i~~~d~~~~---------~~~~~~~~h~~~V~~v~~sp-d~~~laS~s  184 (231)
                      |+.++....         ..+. -.+|.. ...++|+| +++++++-.
T Consensus       171 I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          171 ILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             EEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEEC
T ss_pred             EEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEec
Confidence            777776421         0111 124443 46799999 677766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.78  E-value=0.44  Score=38.54  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=81.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeC--CcceeEEE--cc-CCCEEEE--EcCCeEEEEECCCcceEEeeecccee
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEI--SR-DGTTITV--THGSCVTFLDANSLELIKEHKVPAQV  124 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--~~~~~v~~--~~-~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~  124 (231)
                      +..++.++.||.|.-.|..+|+.+-++...  .++....-  .+ ++..+++  ..++.+..++..++........+.-+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            346888999999999999999888777654  12211110  01 2233333  35778888887766444443332111


Q ss_pred             E--EEEEE----e-c----CCCCEEEEecCCCeEEEEeCCCcceeeeccCCC--CC-----eeEEE---Ec--CCCCEEE
Q psy6442         125 H--SASLL----L-N----SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF--GP-----IHCVK---FS--PDGELYA  181 (231)
Q Consensus       125 ~--~~~~~----~-~----~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~--~~-----V~~v~---~s--pd~~~la  181 (231)
                      .  .+...    . .    ..+..+.+|+.+++++-.|..+|+.+.++....  ..     ..|..   +.  ..+..+.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            0  00100    0 0    134567889999999999999999998875321  10     00111   10  1134566


Q ss_pred             EeeCCCcEEEEeCCCCC
Q psy6442         182 SGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       182 S~s~d~~v~iwd~~~~~  198 (231)
                      .+..+..+.+.+ ++|+
T Consensus       170 ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             EEEEEEECEECC-TTSC
T ss_pred             EecceEEEEEEC-CCCC
Confidence            666667777766 4554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.56  E-value=3.1  Score=33.42  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec----cceeEEEEEEecCC----CCEEEEecCC-----CeEE
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV----PAQVHSASLLLNSE----RPIFVCGGED-----LKMY  148 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~g~~d-----~~i~  148 (231)
                      ..+..+++.|++..+++...+.|..++......+.....    .....  .+.++|+    +.+.++-...     .+|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~--gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLL--GLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEE--EEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCce--eEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            457899999999966666668888887221111211110    11223  3344776    4444443322     6788


Q ss_pred             EEeCCCcc------eeeecc---CCCCCeeEEEEcCCCCEEEEee
Q psy6442         149 KFDYSTGA------EIESFK---GHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       149 ~~d~~~~~------~~~~~~---~h~~~V~~v~~spd~~~laS~s  184 (231)
                      .++...+.      .+..+.   +.......++|.|||.++++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88775331      122233   1112346899999998888754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.08  E-value=5.8  Score=34.79  Aligned_cols=140  Identities=11%  Similarity=0.050  Sum_probs=81.4

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEE
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLL  130 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  130 (231)
                      +++-..++.|..+++........+..+ ..+..+++.+.+..++++.  .+.|...+............. .....+.+ 
T Consensus        52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iav-  130 (628)
T 4a0p_A           52 YWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALAL-  130 (628)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEE-
T ss_pred             EEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEE-
Confidence            445555677877777654433333323 3588999998877777764  367888887654322111111 12233333 


Q ss_pred             ecCC-CCEEEEe-cCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q psy6442         131 LNSE-RPIFVCG-GEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       131 ~~~~-~~~~~~g-~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~~~~  197 (231)
                       +|. +.+..+- +...+|+..++.... ...+-..-...+.|++++++. ++.+=+..+.|...++...
T Consensus       131 -dp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          131 -DPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             -ETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -ccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence             653 4444443 235688888875333 222222345678999999754 5555567788999988543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=91.21  E-value=7.2  Score=34.12  Aligned_cols=135  Identities=10%  Similarity=0.061  Sum_probs=73.5

Q ss_pred             CCCCEEEEeCCCCCceEEE-EeC-CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc-ceeEEEEEEecCC
Q psy6442          60 EDKTVRLWDVSASAEVQKL-EFG-AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSE  134 (231)
Q Consensus        60 ~D~ti~iwd~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~  134 (231)
                      ..+.|..+++........+ ..+ ..+..+++.+.+..++++.  .+.|...+............. .....+.+  +|.
T Consensus        60 ~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iav--dp~  137 (619)
T 3s94_A           60 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL--DPS  137 (619)
T ss_dssp             TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEE--ETT
T ss_pred             CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEE--ecC
Confidence            3456666666544222222 222 4688999999877777764  468888887654322221111 11222333  554


Q ss_pred             -CCEEEEe-cCCCeEEEEeCCCcceeeec-cCCCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCC
Q psy6442         135 -RPIFVCG-GEDLKMYKFDYSTGAEIESF-KGHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVG  197 (231)
Q Consensus       135 -~~~~~~g-~~d~~i~~~d~~~~~~~~~~-~~h~~~V~~v~~spd~-~~laS~s~d~~v~iwd~~~~  197 (231)
                       +.++.+- +....|+..++.- .....+ ...-...+.|+++|++ +++.+=+..+.|...++...
T Consensus       138 ~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          138 SGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             TTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence             4344443 2346777777643 222222 2233457899999965 45555567788988888543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=90.41  E-value=5.6  Score=31.46  Aligned_cols=115  Identities=14%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEE-EEC--CCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCccee
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTF-LDA--NSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI  158 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~-~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~  158 (231)
                      ..+..+.+.+++..+++...+.+.. .|.  .+...+.. ..+..+..+  ...+++.+++. +.++.++..+...++.-
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~--~~~~~g~~~~~-~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR-TTSRRLHNM--GFTPDGRLWMI-VNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC-CSSSCEEEE--EECTTSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC-CCCCcccee--EECCCCCEEEE-eCCceEEEecCCCCCee
Confidence            3567888889888877766554433 332  22222211 112223333  33666665544 45677776632223221


Q ss_pred             eecc----CCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         159 ESFK----GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       159 ~~~~----~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      ..+.    .+...+.++++.|++.+++.+. ++.| .+....|+.+..
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~  284 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ  284 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence            1111    1223588999999888777655 6666 445556755443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=90.18  E-value=6.2  Score=31.69  Aligned_cols=146  Identities=12%  Similarity=0.112  Sum_probs=84.8

Q ss_pred             CCCEEEEeCC---CCCceEEEEeC--------------CcceeEEEccCCCEEE-EEcC-CeEEEEECCCcceEEee-ec
Q psy6442          61 DKTVRLWDVS---ASAEVQKLEFG--------------AVPNSLEISRDGTTIT-VTHG-SCVTFLDANSLELIKEH-KV  120 (231)
Q Consensus        61 D~ti~iwd~~---~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~-~~~~-~~i~~~d~~~~~~~~~~-~~  120 (231)
                      +..|..+|+.   +++.+..+.+.              ..++.++..++|+.-+ -+.. +.|..++........-. ..
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            6778899998   78877776642              1378999999998644 4456 77777776544222111 11


Q ss_pred             c---c--eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce--eeec-cCCCC---CeeEE-EEcCCCCE-EEEeeCCC
Q psy6442         121 P---A--QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE--IESF-KGHFG---PIHCV-KFSPDGEL-YASGSEDG  187 (231)
Q Consensus       121 ~---~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~--~~~~-~~h~~---~V~~v-~~spd~~~-laS~s~d~  187 (231)
                      +   .  ....+  ...|++..|+.....+++..+|+.....  +..- .|...   ....+ ..-.+|+. |++....+
T Consensus       179 ~~~~~~~G~nGI--v~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~  256 (334)
T 2p9w_A          179 GNGGQRPGYSGI--TFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY  256 (334)
T ss_dssp             CCSSSCCSCSEE--EEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred             CCcccccCcceE--EEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence            1   1  12233  3478888777776699999999875332  2110 02211   12332 22235665 66666677


Q ss_pred             cEEEEeCCCCCeeeeeeccCC
Q psy6442         188 TLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       188 ~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      .+.+.+...-+.......+.+
T Consensus       257 ~~~l~S~DgW~sa~~~g~~~~  277 (334)
T 2p9w_A          257 AISFRSWDNWKSANIKKTKRS  277 (334)
T ss_dssp             EEEEECSSTTSEEEEEEEECG
T ss_pred             EEEEECCCCcceeEEeeeecC
Confidence            666776655555544444333

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.80  E-value=7.8  Score=33.70  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             CEEEEeCCC----C-CceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcce-------------EEeeeccc
Q psy6442          63 TVRLWDVSA----S-AEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL-------------IKEHKVPA  122 (231)
Q Consensus        63 ti~iwd~~~----~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~-------------~~~~~~~~  122 (231)
                      .|++-|.+.    + ..++.+..+..+-.+-.+|||+.++++.  +.++.++|......             ........
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            578888876    2 4567777888899999999999998875  46888888763211             11222222


Q ss_pred             eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc----------ceeeeccCCCCCeeEEE-----EcCCCCEEEEee---
Q psy6442         123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG----------AEIESFKGHFGPIHCVK-----FSPDGELYASGS---  184 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~----------~~~~~~~~h~~~V~~v~-----~spd~~~laS~s---  184 (231)
                        ..+-..+++++....+---|..|-.|++..-          ..+..+.-|..+-+-.+     -.|||++|++..   
T Consensus       379 --GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s  456 (638)
T 3sbq_A          379 --GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS  456 (638)
T ss_dssp             --CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred             --cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence              2222334777844455557889999998542          34455555554433211     367888888874   


Q ss_pred             CCCcE----------EEEeCCCCCeeee
Q psy6442         185 EDGTL----------RLWQTNVGKTYGL  202 (231)
Q Consensus       185 ~d~~v----------~iwd~~~~~~~~~  202 (231)
                      .|+.+          .|.|+ +|..+.+
T Consensus       457 kdrfl~vGpl~pen~QlidI-sGdkM~l  483 (638)
T 3sbq_A          457 KDRFLPVGPLHPENDQLIDI-SGDEMKL  483 (638)
T ss_dssp             TTSSCCCSSSCCEEEEEEEC-SSSSCEE
T ss_pred             cccCcCCCCCCCCcceeEec-CCCceEE
Confidence            57665          56777 3334433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.13  E-value=6.5  Score=30.40  Aligned_cols=142  Identities=11%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             CCCEEEEEeCC------CCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEEc----------CCeEEEEECCCcc
Q psy6442          51 NNTRLISCAED------KTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVTH----------GSCVTFLDANSLE  113 (231)
Q Consensus        51 ~~~~l~s~s~D------~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~----------~~~i~~~d~~~~~  113 (231)
                      ++..++.++.+      ..+.+||..+.+-...-..... ....+...+++..+++.          ...+..+|..+..
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            45556666655      4588888877653322111111 11112222444333321          2346778876654


Q ss_pred             eEEeeeccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         114 LIKEHKVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                      -......+.+  ......  . ++.+++.|+.+     ..++.||..+.+  .+..+.........+.+  ++.+++.|+
T Consensus       181 W~~~~~~p~~r~~~~~~~--~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  255 (306)
T 3ii7_A          181 WTELCPMIEARKNHGLVF--V-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG  255 (306)
T ss_dssp             EEEECCCSSCCBSCEEEE--E-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred             EEECCCccchhhcceEEE--E-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence            3322222221  122222  1 55677777653     357888887653  22222211111222223  667777777


Q ss_pred             CC-----CcEEEEeCCCC
Q psy6442         185 ED-----GTLRLWQTNVG  197 (231)
Q Consensus       185 ~d-----~~v~iwd~~~~  197 (231)
                      .+     ..+.+||..+.
T Consensus       256 ~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             BCSSSBCCEEEEEETTTT
T ss_pred             cCCCeeeeeEEEEcCCCC
Confidence            44     56888998775

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.79  E-value=8.1  Score=31.06  Aligned_cols=101  Identities=17%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeee----ccceeEEEEEEecCC----CCEEEEecC---C----Ce
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHK----VPAQVHSASLLLNSE----RPIFVCGGE---D----LK  146 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~g~~---d----~~  146 (231)
                      ..+..+++.|+++.+++...+.|..++......+....    ......  .+.++|+    +.+.++-..   +    .+
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~--gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLL--GLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEE--EEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCcee--eEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45789999999986666666888888743221122111    011223  3344665    444444332   3    56


Q ss_pred             EEEEeCCCc-------c-eeeeccC-CCCCeeEEEEcCCCCEEEEee
Q psy6442         147 MYKFDYSTG-------A-EIESFKG-HFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       147 i~~~d~~~~-------~-~~~~~~~-h~~~V~~v~~spd~~~laS~s  184 (231)
                      |..++....       + .+..+.. .......++|.|||.++++-+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            777776543       1 1122221 111346799999999888754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.09  E-value=7.6  Score=29.88  Aligned_cols=142  Identities=13%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCc-ceeEEEccCCCEEEEEc------CCeEEEEECCCcceEEee
Q psy6442          51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAV-PNSLEISRDGTTITVTH------GSCVTFLDANSLELIKEH  118 (231)
Q Consensus        51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~~~~~~~  118 (231)
                      ++..++.++.+     ..+.++|..+.+-...-..... ....+...+++..+++.      .+.+..+|..+..-....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            34445555543     3577888876654332222211 11112222444333321      245777887664433222


Q ss_pred             eccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC---
Q psy6442         119 KVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED---  186 (231)
Q Consensus       119 ~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d---  186 (231)
                      ..+.+  ......   .++.+++.|+.+     ..++.||..+.+  .+..+...... .++ ..-++.+++.++.+   
T Consensus       192 ~~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~GG~~~~~  266 (301)
T 2vpj_A          192 PMATKRSGAGVAL---LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGA-TVLRGRLYAIAGYDGNS  266 (301)
T ss_dssp             CCSSCCBSCEEEE---ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBCSSS
T ss_pred             CCCcccccceEEE---ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeE-EEECCEEEEEcCcCCCc
Confidence            22221  112221   245677777664     468899987654  22222211111 122 22266777777755   


Q ss_pred             --CcEEEEeCCCC
Q psy6442         187 --GTLRLWQTNVG  197 (231)
Q Consensus       187 --~~v~iwd~~~~  197 (231)
                        ..|.+||..+.
T Consensus       267 ~~~~v~~yd~~~~  279 (301)
T 2vpj_A          267 LLSSIECYDPIID  279 (301)
T ss_dssp             BEEEEEEEETTTT
T ss_pred             ccccEEEEcCCCC
Confidence              45778888775

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=87.68  E-value=19  Score=34.09  Aligned_cols=129  Identities=12%  Similarity=0.116  Sum_probs=74.1

Q ss_pred             CCCEEEEeCCCCCc--eEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCC
Q psy6442          61 DKTVRLWDVSASAE--VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERP  136 (231)
Q Consensus        61 D~ti~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  136 (231)
                      -|.|.++++..++.  +...+.+..+.+++--. | .++++-++++++|+....+.++ ....  ..+....+  ...+.
T Consensus       863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l--~~~~~  937 (1158)
T 3ei3_A          863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYL--KTKGD  937 (1158)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEE--EEETT
T ss_pred             ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEE--eccCC
Confidence            36688888764322  23334567787776554 3 6667778899999987655443 1111  01111122  22355


Q ss_pred             EEEEecCCCeEEE--EeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         137 IFVCGGEDLKMYK--FDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       137 ~~~~g~~d~~i~~--~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      +++.|.-...+.+  |+...+++ ..+-.  +...++++.|=.++ .++.+..+|+|.+.....
T Consensus       938 ~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          938 FILVGDLMRSVLLLAYKPMEGNF-EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEESSBCEEEEEEETTTTEE-EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEEEhhheEEEEEEEcCCCeE-EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            6777766655554  55444433 22222  33456777775554 677789999999987543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.14  E-value=11  Score=30.51  Aligned_cols=162  Identities=14%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             eecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-------CCcceeEEEccC-
Q psy6442          21 FEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-------GAVPNSLEISRD-   92 (231)
Q Consensus        21 l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~-   92 (231)
                      +-..-..-+.++|.|+|..               +++--..|.|++++...++.......       ...+..++++|+ 
T Consensus        27 va~gL~~P~~ia~~pdG~l---------------lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf   91 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDL---------------LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDY   91 (347)
T ss_dssp             EECCCSSEEEEEECTTSCE---------------EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTH
T ss_pred             eecCCCCceEEEEcCCCcE---------------EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecccc
Confidence            3333445578888887543               44443378888887655543222111       234678999996 


Q ss_pred             --CCEEEEE----cCCeEEEEECCCc-----ce--EEe-e-eccc-ee-EEEEEEecCCCCEEEEecC------------
Q psy6442          93 --GTTITVT----HGSCVTFLDANSL-----EL--IKE-H-KVPA-QV-HSASLLLNSERPIFVCGGE------------  143 (231)
Q Consensus        93 --~~~~~~~----~~~~i~~~d~~~~-----~~--~~~-~-~~~~-~~-~~~~~~~~~~~~~~~~g~~------------  143 (231)
                        ...+++.    ..+.|..+.....     ..  .+. + ..+. .. ....+.+.+++.+.++-+.            
T Consensus        92 ~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~  171 (347)
T 3das_A           92 ASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKS  171 (347)
T ss_dssp             HHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTC
T ss_pred             ccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCC
Confidence              4455553    2345555544331     10  111 1 1111 00 1112334778877666432            


Q ss_pred             -CCeEEEEeCCCc---------ceeeeccCCCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCe
Q psy6442         144 -DLKMYKFDYSTG---------AEIESFKGHFGPIHCVKFSPDGELYASG-SEDGTLRLWQTNVGKT  199 (231)
Q Consensus       144 -d~~i~~~d~~~~---------~~~~~~~~h~~~V~~v~~spd~~~laS~-s~d~~v~iwd~~~~~~  199 (231)
                       .+.|+.++....         ..+.. .||.. ...++|+|+|.++++= +.|+-=.|--+..|..
T Consensus       172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n  236 (347)
T 3das_A          172 LGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN  236 (347)
T ss_dssp             STTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCB
T ss_pred             CCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCE
Confidence             366777776422         11111 35653 4579999998877654 3344334444444443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.34  E-value=9.7  Score=29.30  Aligned_cols=149  Identities=15%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCC-----CEEEEeCCCCCceEEEEeCCcc--eeEEEccCCCEEEEEc--------CCeEEEEECCCcceE
Q psy6442          51 NNTRLISCAEDK-----TVRLWDVSASAEVQKLEFGAVP--NSLEISRDGTTITVTH--------GSCVTFLDANSLELI  115 (231)
Q Consensus        51 ~~~~l~s~s~D~-----ti~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~--------~~~i~~~d~~~~~~~  115 (231)
                      ++..++.++.++     .+.+||+.+.+-...-..+...  ..++. .+++..+++.        ...+..+|..+..-.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            455566666553     4667787765433221111111  12222 2333333321        234677887654433


Q ss_pred             Eeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         116 KEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       116 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      .....+.  .......   -++.+++.|+.+     ..++.||..+.+  .+..+...... .++ ..-++.+++.|+.+
T Consensus       187 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~-~~~~~~i~v~GG~~  261 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGV---LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV-CAVNGLLYVVGGDD  261 (302)
T ss_dssp             EECCCSSCCBSCEEEE---ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBC
T ss_pred             ECCCCccccccccEEE---ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE-EEECCEEEEECCcC
Confidence            2222222  1122222   256677777654     368889987653  22222211111 112 22366777777755


Q ss_pred             C-----cEEEEeCCCCCeeeeeeccCCc
Q psy6442         187 G-----TLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       187 ~-----~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      +     .+.+||..+.    .|+.+.+.
T Consensus       262 ~~~~~~~v~~yd~~~~----~W~~~~~~  285 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTD----KWTVVSSC  285 (302)
T ss_dssp             SSSBCCCEEEEETTTT----EEEECSSC
T ss_pred             CCcccccEEEEcCCCC----eEEECCcc
Confidence            3     4889998875    57765533

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=86.13  E-value=10  Score=29.42  Aligned_cols=91  Identities=14%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             CeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCCC-----eEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGEDL-----KMYKFDYSTGA--EIESFKGHFGPIHCVK  172 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~-----~i~~~d~~~~~--~~~~~~~h~~~V~~v~  172 (231)
                      +.+..+|..+..-......+.+  ......   -++.+++.|+.+.     .++.||..+.+  .+..+...... .++.
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~  240 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTARSLFGATV---HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LSLV  240 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CEEE
T ss_pred             ceEEEEeCCCCeEEECCCCCCchhceEEEE---ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-eeEE
Confidence            3577788765443222222221  122222   1556777776543     57888887653  22222211111 1222


Q ss_pred             EcCCCCEEEEeeCC--------------CcEEEEeCCCC
Q psy6442         173 FSPDGELYASGSED--------------GTLRLWQTNVG  197 (231)
Q Consensus       173 ~spd~~~laS~s~d--------------~~v~iwd~~~~  197 (231)
                      . -++.+++.|+.+              ..|.+||+.+.
T Consensus       241 ~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          241 S-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             E-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             E-ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            2 256777777653              23678888775

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=85.80  E-value=15  Score=30.97  Aligned_cols=133  Identities=11%  Similarity=0.168  Sum_probs=88.4

Q ss_pred             CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442          61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (231)
                      ..+|-|-|+..+.....-.  -...+.-.+|..+.++...+..+.++++.+...++.+..+.++....|. +++.  ++.
T Consensus        47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi-s~~~--l~l  121 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNT--VAL  121 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE--CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE-ETTE--EEE
T ss_pred             CCeEEEEECCCCCcceecc--cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec-CCCe--EEE
Confidence            3478888888765543222  2334666788888887777889999999999999999888777665553 3333  222


Q ss_pred             ecCCCeEEEEeCCC-cceeeeccCCC----CCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCCe
Q psy6442         141 GGEDLKMYKFDYST-GAEIESFKGHF----GPIHCVKFSPDGELYASGS-------EDGTLRLWQTNVGKT  199 (231)
Q Consensus       141 g~~d~~i~~~d~~~-~~~~~~~~~h~----~~V~~v~~spd~~~laS~s-------~d~~v~iwd~~~~~~  199 (231)
                      . .+..|+-|++.. ..+.+.|+.|.    ..|..-..+++.+.++-.+       -.|.+-+|..+.+..
T Consensus       122 V-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s  191 (494)
T 1bpo_A          122 V-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (494)
T ss_dssp             E-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred             E-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc
Confidence            2 256789999863 34455555443    4577777888887655333       245677888876553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.77  E-value=10  Score=29.08  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             CCCEEEEEeCC-----CCEEEEeCCCCC---ceEEEEeCCc-ceeEEEccCCCEEEEEc------CCeEEEEECCCcceE
Q psy6442          51 NNTRLISCAED-----KTVRLWDVSASA---EVQKLEFGAV-PNSLEISRDGTTITVTH------GSCVTFLDANSLELI  115 (231)
Q Consensus        51 ~~~~l~s~s~D-----~ti~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~~~~~~~~~------~~~i~~~d~~~~~~~  115 (231)
                      ++..++.++.+     ..+.+||..+.+   -...-..+.. ....+...++...+++.      .+.+..+|..+..-.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            34455566654     468889988776   3322112111 11112222444333321      235778887664433


Q ss_pred             Eeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         116 KEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       116 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      .....+.  .......   .++.+++.|+.+     ..++.||..+.+  .+..+...... .++. .-++.+++.|+.+
T Consensus       142 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~  216 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVV---ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVA-LLNDHIYVVGGFD  216 (301)
T ss_dssp             EEEECSSCCBSCEEEE---ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBC
T ss_pred             ECCCCCCCcccceEEE---ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEE-EECCEEEEEeCCC
Confidence            2222222  1122222   256677777654     358888887653  22222211111 1222 2256777777754


Q ss_pred             -----CcEEEEeCCCCC
Q psy6442         187 -----GTLRLWQTNVGK  198 (231)
Q Consensus       187 -----~~v~iwd~~~~~  198 (231)
                           ..+.+||+.+.+
T Consensus       217 ~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCc
Confidence                 568899987753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=84.24  E-value=12  Score=28.68  Aligned_cols=141  Identities=14%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             CCCEEEEEeCC-----CCEEEEeCCCCCceEEEEeCCc-c-eeEEEccCCCEEEEE-cC-----CeEEEEECCCcceEEe
Q psy6442          51 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAV-P-NSLEISRDGTTITVT-HG-----SCVTFLDANSLELIKE  117 (231)
Q Consensus        51 ~~~~l~s~s~D-----~ti~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~-~~-----~~i~~~d~~~~~~~~~  117 (231)
                      ++..++.++.+     ..+.+||..+.+-...-..+.. . ..++. .++...+++ .+     +.+..+|..+..-...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            34455556544     3577888876643322111111 1 12222 234433332 22     2466778765443322


Q ss_pred             eeccce--eEEEEEEecCCCCEEEEecCC-------CeEEEEeCCCcc--eeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         118 HKVPAQ--VHSASLLLNSERPIFVCGGED-------LKMYKFDYSTGA--EIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       118 ~~~~~~--~~~~~~~~~~~~~~~~~g~~d-------~~i~~~d~~~~~--~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      ...+.+  ......   -++.+++.|+.+       ..++.||..+.+  .+..+...... .++.. -++.+++.|+.+
T Consensus       140 ~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~  214 (302)
T 2xn4_A          140 APMNTRRSSVGVGV---VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGV-LNNLLYAVGGHD  214 (302)
T ss_dssp             CCCSSCCBSCEEEE---ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBS
T ss_pred             CCCCCcccCceEEE---ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEE-ECCEEEEECCCC
Confidence            222221  122221   245667777542       348888887653  22222211111 12222 256777777754


Q ss_pred             -----CcEEEEeCCCC
Q psy6442         187 -----GTLRLWQTNVG  197 (231)
Q Consensus       187 -----~~v~iwd~~~~  197 (231)
                           ..+.+||..+.
T Consensus       215 ~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             SSSBCCCEEEEETTTT
T ss_pred             CCcccceEEEEeCCCC
Confidence                 46889998775

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=83.82  E-value=13  Score=28.71  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=46.5

Q ss_pred             CeEEEEECCCcceEEeeeccc--eeEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442         102 SCVTFLDANSLELIKEHKVPA--QVHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVK  172 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~  172 (231)
                      +.+..+|..+..-......+.  .......  . ++.+++.|+.+     ..++.||+.+.+  .+..+...... .++.
T Consensus       184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~  259 (308)
T 1zgk_A          184 NSAECYYPERNEWRMITAMNTIRSGAGVCV--L-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGIT  259 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred             ceEEEEeCCCCeEeeCCCCCCccccceEEE--E-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEE
Confidence            357778876544322222222  1122222  1 56677777654     458899987653  22222211111 1222


Q ss_pred             EcCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy6442         173 FSPDGELYASGSED-----GTLRLWQTNVG  197 (231)
Q Consensus       173 ~spd~~~laS~s~d-----~~v~iwd~~~~  197 (231)
                      . -++.+++.|+.+     ..+.+||..+.
T Consensus       260 ~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          260 V-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             E-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             E-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            2 256777777643     45778888774

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.21  E-value=3.1  Score=33.58  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=62.8

Q ss_pred             EEEEEcCCeEEEEECCCcceEEeeecc--ceeEEEEEEec-CCCCEEEEe-cCCCeEEEEeCCCcceeeeccC----CCC
Q psy6442          95 TITVTHGSCVTFLDANSLELIKEHKVP--AQVHSASLLLN-SERPIFVCG-GEDLKMYKFDYSTGAEIESFKG----HFG  166 (231)
Q Consensus        95 ~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g-~~d~~i~~~d~~~~~~~~~~~~----h~~  166 (231)
                      .++.+.++.+.-+|..+++....++..  .+.....-... .++..++.. ..||.++.++..+|.....+.-    ...
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S   92 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS   92 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence            344556778888888887777776554  12211000000 122333333 5799999999887754332211    122


Q ss_pred             CeeE---EEE-c----CCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         167 PIHC---VKF-S----PDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       167 ~V~~---v~~-s----pd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      |+..   ..+ .    -.+..+.+++.++.+.-.|+.+|+....++
T Consensus        93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            2221   000 0    034577889999999999999999776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.07  E-value=19  Score=30.03  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCee
Q psy6442         163 GHFGPIHCVKFSPDGELYASG-SEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       163 ~h~~~V~~v~~spd~~~laS~-s~d~~v~iwd~~~~~~~  200 (231)
                      +|. .+..++|.|+|.++++- +.++--.|.-+..|..+
T Consensus       226 G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~G~nY  263 (454)
T 1cru_A          226 GHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNY  263 (454)
T ss_dssp             CCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCTTCBC
T ss_pred             CCC-CcceEEECCCCCEEEEecCCCCCeEEEEecCCCCC
Confidence            554 46789999998866654 45666677777776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.84  E-value=15  Score=28.46  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=46.9

Q ss_pred             CeEEEEECCCcceEEeeeccce--eEEEEEEecCCCCEEEEecCC-----CeEEEEeCCCcc--eeeeccCCCCCeeEEE
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQ--VHSASLLLNSERPIFVCGGED-----LKMYKFDYSTGA--EIESFKGHFGPIHCVK  172 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d-----~~i~~~d~~~~~--~~~~~~~h~~~V~~v~  172 (231)
                      ..+..+|..+..-......+.+  ......  . ++.+++.|+.+     ..++.||..+.+  .+..+...... .++.
T Consensus       137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~  212 (308)
T 1zgk_A          137 NSVERYEPERDEWHLVAPMLTRRIGVGVAV--L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVC  212 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred             ccEEEECCCCCeEeECCCCCccccceEEEE--E-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEE
Confidence            3567788765443322222221  122222  1 56677777654     358888886653  22222211111 1222


Q ss_pred             EcCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy6442         173 FSPDGELYASGSED-----GTLRLWQTNVG  197 (231)
Q Consensus       173 ~spd~~~laS~s~d-----~~v~iwd~~~~  197 (231)
                      .. ++.+++.|+.+     ..+.+||+.+.
T Consensus       213 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          213 VL-HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            22 66777777654     56889998775

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=82.83  E-value=10  Score=36.92  Aligned_cols=133  Identities=12%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEE
Q psy6442          61 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVC  140 (231)
Q Consensus        61 D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (231)
                      ..+|-|-|+..+.....-  +-...+.-.+|..+.++...+..+.++++.+...++.+..+.++....| .++...-+++
T Consensus        47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkW-is~~~l~lVT  123 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW-ISLNTVALVT  123 (1630)
T ss_pred             CceEEEEECCCCCCcccc--cccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEe-cCCCeeEEEc
Confidence            347888888775443111  1223355568888887777788999999999988888888777765555 2444332333


Q ss_pred             ecCCCeEEEEeCCC-cceeeeccCC----CCCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCCe
Q psy6442         141 GGEDLKMYKFDYST-GAEIESFKGH----FGPIHCVKFSPDGELYASGS-------EDGTLRLWQTNVGKT  199 (231)
Q Consensus       141 g~~d~~i~~~d~~~-~~~~~~~~~h----~~~V~~v~~spd~~~laS~s-------~d~~v~iwd~~~~~~  199 (231)
                         +..|+-|++.. ..+.+.|..|    ...|..-..+++...++-.+       -.|.+-+|....+..
T Consensus       124 ---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s  191 (1630)
T 1xi4_A          124 ---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (1630)
T ss_pred             ---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc
Confidence               56789999853 3344445545    34577777788877655332       357778888766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.47  E-value=17  Score=29.00  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             CcceeEEEccCCC-EEEEEcCCeEEEEECC
Q psy6442          82 AVPNSLEISRDGT-TITVTHGSCVTFLDAN  110 (231)
Q Consensus        82 ~~~~~v~~~~~~~-~~~~~~~~~i~~~d~~  110 (231)
                      ..+..+++.|+++ .+++...+.|.+++..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            4678999999998 6666667888888753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=80.85  E-value=12  Score=32.66  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             CceeeeccC----CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC------Cc-
Q psy6442           6 KPMLRQGDT----GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS------AE-   74 (231)
Q Consensus         6 ~~~~~~~~~----g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~------~~-   74 (231)
                      .|.+.|+..    +.-+-.|-.-...-+.+.++|||+++              ++++--+.++-++|++.-      +. 
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi--------------~v~GKLsptvtV~d~~k~~~~~~~k~~  364 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYF--------------IAAGKLSPTCSMIAIDKLPDLFAGKLA  364 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEE--------------EEECTTSSBEEEEEGGGHHHHHTTCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEE--------------EEcCCCCCeEEEEEeehhhhhhhcccc
Confidence            466777654    33222222222334577888887764              556666888999998631      11 


Q ss_pred             ------eEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCC
Q psy6442          75 ------VQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS  111 (231)
Q Consensus        75 ------~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~  111 (231)
                            ....+.+-.+...+|.++| ..+++  -++.+..|++..
T Consensus       365 ~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          365 DPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             CcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence                  2233456678899999999 55544  478899998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (210), Expect = 3e-20
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 56  ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLDANSL 112
           +S A D + +LWDV      Q      +  N++    +G          +C  F      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 113 ELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVK 172
           EL+            S+  +    + + G +D     +D           GH   + C+ 
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319

Query: 173 FSPDGELYASGSEDGTLRLW 192
            + DG   A+GS D  L++W
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 8e-10
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
            +FV G  D     +D   G   ++F GH   I+ + F P+G  +A+GS+D T RL+   
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 196 VGKTYGLWKC 205
             +    +  
Sbjct: 257 ADQELMTYSH 266

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 160 SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           + +GH   I+ + +  D  L  S S+DG L +W +    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 15/65 (23%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT 63
           D    +      D  G   GH   V  + +  D                  + + + D  
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD---------------GMAVATGSWDSF 335

Query: 64  VRLWD 68
           +++W+
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           T  GH   ++ +    D               +  L+S ++D  + +WD   + +V  + 
Sbjct: 50  TLRGHLAKIYAMHWGTD---------------SRLLVSASQDGKLIIWDSYTTNKVHAIP 94

Query: 80  FGAVP-NSLEISRDGTTITVTHGSCVTF---LDANSLELIKEHKVPAQVHSASLLLNSER 135
             +    +   +  G  +       +     L      +    ++       S     + 
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
              V    D     +D  TG +  +F GH G +  +  +PD  L+ SG+ D + +LW   
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214

Query: 196 VGKTYGLWKCIEGGLNNSLGLDSSGHL 222
            G     +   E  + N++    +G+ 
Sbjct: 215 EGMCRQTFTGHESDI-NAICFFPNGNA 240

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 9e-18
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 8/200 (4%)

Query: 1   MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK----NNTRLI 56
              D    + +  TG  + TF GH+  V  V  N+D +  AS + D   +          
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 57  SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGS---CVTFLDANSLE 113
           +   +    +  +S + E           S           +  GS    +   D ++  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 114 LIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF 173
            +             +L +S     +   +D  +  +DY     +++   H   +  + F
Sbjct: 239 CLMTLVGHDNWVR-GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 174 SPDGELYASGSEDGTLRLWQ 193
                   +GS D T+++W+
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 3e-13
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
              GH+  V  V  +                  + ++S +ED T+++WD       + L+
Sbjct: 12  ALSGHRSPVTRVIFHPV---------------FSVMVSASEDATIKVWDYETGDFERTLK 56

Query: 80  FGAVP-NSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF 138
                   +     G  +          L                 + +S+ +       
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
           V    D  +  ++  TG  +++F GH   +  V+ + DG L AS S D T+R+W   
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 7e-13
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 48/256 (18%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-------------------------- 37
           D    +   +TGD+  T +GH   V  +  +                             
Sbjct: 38  DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97

Query: 38  -SKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT 95
                + ++     N   ++S + DKT+++W+V     V+           +  ++DGT 
Sbjct: 98  HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 157

Query: 96  I-TVTHGSCVTFLDANSLELIKEHK-------------------VPAQVHSASLLLNSER 135
           I + ++   V      + E   E +                   +     S +       
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
           P  + G  D  +  +D STG  + +  GH   +  V F   G+   S ++D TLR+W   
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 196 VGKTYGLWKCIEGGLN 211
             +        E  + 
Sbjct: 278 NKRCMKTLNAHEHFVT 293

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 9e-10
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 154 TGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
              E  +  GH  P+  V F P   +  S SED T+++W    G 
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 50

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-14
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 26/201 (12%)

Query: 1   MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE 60
              D    +   +T   + T +GH   V+                     +   ++S + 
Sbjct: 153 GAYDFMVKVWDPETETCLHTLQGHTNRVY-----------------SLQFDGIHVVSGSL 195

Query: 61  DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV 120
           D ++R+WDV     +  L       S    +D   ++    S V   D  + + ++  + 
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 121 PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK-----GHFGPIHCVKFSP 175
           P +  SA   L   +   +   +D  +  +D  TG  I +       G  G +  ++ S 
Sbjct: 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315

Query: 176 DGELYASGSEDGT----LRLW 192
              + A GS +GT    L + 
Sbjct: 316 TKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-----------------------SKA 40
           D    +    TG  + T  GH G VW   +  +                           
Sbjct: 36  DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG 95

Query: 41  ASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 100
            +        +  R++S + D T+R+WD+     +  L                 ++  +
Sbjct: 96  HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 155

Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
              V   D  +   +   +       +      +    V G  D  +  +D  TG  I +
Sbjct: 156 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205
             GH      ++   +  +  SG+ D T+++W    G+     + 
Sbjct: 213 LTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 255

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 151 DYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
                   +  KGH   +        G    SGS+D TL++W    GK
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK 48

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 57/227 (25%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
             +GH   V                  F      R++S ++D T+++W       ++ L 
Sbjct: 11  VLKGHDDHVIT-------------CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 80  --FGAVPNSLEISRDGTT------------------------------------ITVTHG 101
              G V  S ++  +                                         V  G
Sbjct: 55  GHTGGV-WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF 161
           S    L    +E  +   V     +A   +  +    V G  D  +  +D  T   + + 
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG 208
           +GH           DG    SGS D ++R+W    G         + 
Sbjct: 174 QGH--TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
           +  R++S A D  V++WD      +  L+                ++ +  + +   D  
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205

Query: 111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI-H 169
           +   I        + S    +  +  I V G  D  +  +D  TG  +++ +G       
Sbjct: 206 TGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262

Query: 170 CVKFSPDGELYASGSEDGTLRLWQTNVGK 198
                 +     + S+DGT++LW    G+
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGE 291

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (168), Expect = 2e-14
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 26/173 (15%)

Query: 47  FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--------NSLEISRDGTTI-T 97
               +   + + + D+ VR+WD      V++L+              S+  +RDG ++ +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 98  VTHGSCVTFLDANSLELIKEHKVPAQVHSA-----------SLLLNSERPIFVCGGEDLK 146
            +    V   +  +     + K P                 S+         + G +D  
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 147 MYKFDYSTGAEIESFKGHFGPIHCV------KFSPDGELYASGSEDGTLRLWQ 193
           +  +D  +G  +   +GH   +  V         P+  ++A+GS D   R+W+
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 132 NSERPIFVCGGEDLKMYKFDYSTG-------AEIESFKGHFGPIHCVKFSPDGELYASGS 184
             +      G  D  +  +D  TG       +E ES  GH   ++ V F+ DG+   SGS
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

Query: 185 EDGTLRLWQTNVGKTYGLWKC 205
            D +++LW           K 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKT 294

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK---TYGLWKCIEGGLNNS 213
           E+     H   + CVKFS DGE  A+G  + T ++++ + G                 N 
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 214 LGLDSSGHLNNVHEV 228
               S      +  V
Sbjct: 113 NTSSSPSSDLYIRSV 127

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 18/218 (8%)

Query: 1   MCVDGKPMLRQGDTGDWIGTFE---------------GHKGCVWGVDINKDASKAASGAA 45
           +     P   +  T D+   +                 H   V  V  + D    A+G  
Sbjct: 23  LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCN 82

Query: 46  D---FQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGS 102
                   ++  L++   D +    D                 S+  S DG  +      
Sbjct: 83  KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142

Query: 103 CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK 162
            +  +       I       +    SL         V G  D  +  +D  TG    +  
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202

Query: 163 GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY 200
              G         DG+  A+GS D  +R+W +  G   
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT 63
           D   +     +G+ +   +GH+  V  V +   +S                  + + D  
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY---------NVFATGSGDCK 379

Query: 64  VRLWDV 69
            R+W  
Sbjct: 380 ARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 12/83 (14%)

Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHF------------GPIHCVKFSP 175
           S++   +    V G  D  +  ++          K                 +  V  + 
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 176 DGELYASGSEDGTLRLWQTNVGK 198
           + E   SGS+D  +  W    G 
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGN 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 46  DFQAKNNTRLISCAEDKTVRLWDVSASAE-----VQKLEFGAVPNSLEISRDGTTITVTH 100
           D  +++    +    +    L++ +   E      + L+  +V   ++ S DG  +    
Sbjct: 22  DLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC 81

Query: 101 GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES 160
                    +   L+      +  +     LN+                          S
Sbjct: 82  NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS-------------------------S 116

Query: 161 FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC 205
                  I  V FSPDG+  A+G+ED  +R+W     K   + + 
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 123 QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYAS 182
           +    SL        FV  G+D  +  +    GA I         +     S D +   +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 183 GSEDGTLRLWQ 193
           GS D    +++
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 163 GHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVG 197
            H   +  V  S       +G   G +++W  +  
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           H   +  +KF+  G+ + S  +D  L  W+T  G 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI 96
                +S  +D  +  W     A + + +  +   S +IS D   I
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 3e-10
 Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN 110
           ++  ++S + D+T+++W+ S    V+ L       +    RD   ++ +  + +   D  
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206

Query: 111 SLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE---------IESF 161
               ++  +   ++         +    V G  D K+  +D     +         + + 
Sbjct: 207 CGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
             H G +  ++F  D     S S D T+ +W
Sbjct: 264 VEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            I         ++C     D +   SG  D T+++W  N  +
Sbjct: 7   RIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLE 46

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 17/66 (25%)

Query: 3   VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK 62
           +      R       + T   H G V+ +  +                   +++S + D 
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-----------------EFQIVSSSHDD 287

Query: 63  TVRLWD 68
           T+ +WD
Sbjct: 288 TILIWD 293

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.8 bits (135), Expect = 3e-10
 Identities = 14/163 (8%), Positives = 38/163 (23%), Gaps = 19/163 (11%)

Query: 51  NNTRLISCAEDKTVRLWDVS-------ASAEVQKLEF-GAVPNSLEISRDGTTITVTHGS 102
           ++  L   +        D           ++   +      PN  ++     T       
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 103 CVTFLDANSLELIKEHKVPAQVHS-------ASLLLNSERPIFVCGGEDLKMYKFDYSTG 155
                  +S   +        +         +  +       +    E   + K+D  T 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
                       +  ++ S D +      +DG +  +     +
Sbjct: 309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (133), Expect = 9e-10
 Identities = 24/187 (12%), Positives = 47/187 (25%), Gaps = 18/187 (9%)

Query: 52  NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN 110
           N   ++  +   + L D S       L+ G   +   +S  G  + V      V  +D  
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 111 SLELIKEHKVPAQVHSASLLLNSE-----RPIFVCGGEDLKMYKFDYSTGAEIESFK--- 162
             E     ++     + S+  +       +          +    D  T    +      
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 163 --------GHFGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNS 213
                        +  +  S    E   +  E G + L            +       + 
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 211

Query: 214 LGLDSSG 220
            GLD S 
Sbjct: 212 GGLDGSH 218

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTG--AEIESFKGHFGPIHCVKFSPDGELYASGSE 185
               N +R        + +++ ++ S     ++   K H G +  V ++PD     +   
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 186 DGTLRLWQTNVGKTYGLWKC 205
           D    +W             
Sbjct: 72  DRNAYVWTLKGRTWKPTLVI 91

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           PI C  ++ D    A    +  + +++ +  K
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK 40

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 9/148 (6%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE-ISRDGTTITVTH-GSCVTFLD 108
           N +R+   + D TV L D      V  L    +P        + + +   H    V F  
Sbjct: 212 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY 271

Query: 109 ANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI 168
            ++   +           +S    + R  F       K    + S  A       H   +
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD---KKASSEGSAAAGAGLDSLHKNSV 328

Query: 169 HCVKFSPDGE----LYASGSEDGTLRLW 192
             +     G+     + +   DG + +W
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 17/67 (25%)

Query: 4  DGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED 61
          + +  + +     W  +   + H G V GVD   D               + R+++C  D
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---------------SNRIVTCGTD 72

Query: 62 KTVRLWD 68
          +   +W 
Sbjct: 73 RNAYVWT 79

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 1e-09
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 155 GAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           G+  +   GH   I  +  S DG+   S   +G +  W  + G 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 45

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-05
 Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 2/57 (3%)

Query: 138 FVCGGEDLKMYKFDYSTGAEIE--SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW 192
              G  D  +  ++ +  ++        H           +     S  +D  ++ W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 15/62 (24%)

Query: 20 TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
             GH   +  +  + D                  L S   +  +  WD+S     +   
Sbjct: 7  VRYGHNKAITALSSSAD---------------GKTLFSADAEGHINSWDISTGISNRVFP 51

Query: 80 FG 81
            
Sbjct: 52 DV 53

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 9/68 (13%), Positives = 23/68 (33%)

Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLD 217
           ++  +     I  +K  P   L    S DG+L +++ ++              +  L  +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 218 SSGHLNNV 225
              + +  
Sbjct: 64  FIDNTDLQ 71

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 7e-07
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG 187
           S+  +         G D  +  ++  T  +I++F         VK +    +    + D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314

Query: 188 TLRLW 192
           T +  
Sbjct: 315 TFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGL 216
                     P++ ++FSP  +   +   DG +  W     K   +    +   ++ + +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--IKNFAKFNEDSVVKI 300

Query: 217 DSSGHL 222
             S ++
Sbjct: 301 ACSDNI 306

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 6/90 (6%), Positives = 20/90 (22%), Gaps = 19/90 (21%)

Query: 18  IGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK 77
           +   +  K  +  + I                   + L+  + D ++ ++     A+   
Sbjct: 4   VQIEQAPKDYISDIKIIPS---------------KSLLLITSWDGSLTVYKFDIQAKNVD 48

Query: 78  L----EFGAVPNSLEISRDGTTITVTHGSC 103
           L     +           +           
Sbjct: 49  LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 4e-08
 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE-IESFKGHFGPIHCVKFSPDGELYASG 183
              +     E  +   G  D  ++ +      + I++   H   ++ + +     L  S 
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL-VSS 275

Query: 184 SEDGTLRLW 192
             D  ++ W
Sbjct: 276 GADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 9e-06
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 158 IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT 199
           +++  GH   I  +  +P      SGS DG +  W ++    
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 16/57 (28%)

Query: 13  DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDV 69
                I     HK  V  +                     + L+S   D  ++ W+V
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETP----------------STLVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 4e-08
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196
           I  C G  +        +  + E +  H       K SP G   ASG   G +R+W T  
Sbjct: 32  IQYCNGTSVYTV--PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 89

Query: 197 GKTYGLWKC 205
                    
Sbjct: 90  TTHILKTTI 98

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 8e-07
 Identities = 5/58 (8%), Positives = 15/58 (25%), Gaps = 1/58 (1%)

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-PIHCVKFSPDGELYASGSEDGTLRLW 192
                   D  +  ++ +T    ++           +      +   S S +G +   
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 26/79 (32%)

Query: 144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW 203
           +            +      H G +  + +SPDG   AS S D T+++W     K     
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 204 KCIEGGLNNSLGLDSSGHL 222
                  +  LG+  +   
Sbjct: 277 PVGTRIEDQQLGIIWTKQA 295

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 50  KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTI-TVTHGSCVTF 106
            + T++ S + DKT+++W+V+     + +  G       L I      + +++    + F
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 107 LD 108
           ++
Sbjct: 308 VN 309

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTN 195
            ++   E   +   D ++     +      P      SPDG  +Y + +    + +  T 
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 196 VGKTYGLWKCIEG 208
                        
Sbjct: 63  TNNVIATVPAGSS 75

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQTNVGK 198
           +   D  T            P   +  +PDG+ +Y + S   T+ +  T    
Sbjct: 226 VSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 56  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS 111
           I+ +E   + + DV+++     +  G+ P    IS DGT + V   H + V+ +D  +
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 9/87 (10%), Positives = 20/87 (22%), Gaps = 15/87 (17%)

Query: 1   MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAE 60
                   +    T               G+ +  D  K                ++ + 
Sbjct: 220 DKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKV--------------YVALSF 264

Query: 61  DKTVRLWDVSASAEVQKLEFGAVPNSL 87
             TV + D + +     +  G  P + 
Sbjct: 265 CNTVSVIDTATNTITATMAVGKNPYAS 291

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 14/161 (8%), Positives = 40/161 (24%), Gaps = 20/161 (12%)

Query: 55  LISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDGTTITVT--HGSCVTFLDA 109
           +++ A    + + D    A  + +   + G  P    ++  G     T      +  +D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 110 NSLELIKEHKVPAQVH----SASLLLNSERPIFVCGGEDLKMYKFDYSTG---------- 155
            + E +    +              L+ +          +++    +             
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 156 -AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
                        I  + ++ DG        D  +   +  
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 24/194 (12%), Positives = 48/194 (24%), Gaps = 11/194 (5%)

Query: 24  HKGCVWGVDINKDASKAASGAADFQAKNNT--------RLISCAEDKTVRLWDVSASAEV 75
               +  +   +D SK      D    +           + S   +   +   ++   + 
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 76  QKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSER 135
           +     A P               + + +  +D  + E+         V   S  +N  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTN 195
                      +  FD    A I+         + V  S DG     G   G L  +   
Sbjct: 253 TRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

Query: 196 VGKTYGLWKCIEGG 209
             +  G        
Sbjct: 310 TLEKKGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 3/77 (3%)

Query: 135 RPIFVCGGEDLKMYKFDYSTGAEIESFK--GHFGPIHCVKFSPDGE-LYASGSEDGTLRL 191
           R   +      K+   D    A  +                +P G   YA+ ++  +L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 192 WQTNVGKTYGLWKCIEG 208
                G+T G       
Sbjct: 61  IDLVTGETLGRIDLSTP 77

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 6/167 (3%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA 109
            N   ++  +   + L D  +   V+ ++ G   +   +S  G  + V    + +  +D 
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDL 90

Query: 110 NSLELIKEHKVPAQVHSASLLLNSE-----RPIFVCGGEDLKMYKFDYSTGAEIESFKGH 164
            + E  K  ++   + + S+  +       R          +    D  T    +     
Sbjct: 91  WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 165 FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLN 211
              +    + P+  + A  +                 L    +   N
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 197

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 125 HSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES-FKGHFGPIHCVKFSPDGELYASG 183
           + +++         +  G + +   ++  +G  + +        I  V F     L A+ 
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAV 341

Query: 184 SEDGTLRLW 192
            +DG   L 
Sbjct: 342 EKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV 196
             + G +D  +  +D      +    GH G +  +K++  G L +  ++           
Sbjct: 25  YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84

Query: 197 GKTYGLWKC 205
             T+     
Sbjct: 85  CCTHVFEGH 93

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
           +  + +GH   +       +     +G++D  +R++ +   K
Sbjct: 4   QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKK 44

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 20/149 (13%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE 79
           T  GH   V                  F    +  +I+ A+DK +R++D      + +L 
Sbjct: 7   TLRGHMTSVIT-------------CLQF---EDNYVITGADDKMIRVYDSINKKFLLQLS 50

Query: 80  F--GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERP 136
              G V  +L+ +  G  ++  T  +   +               + V    ++      
Sbjct: 51  GHDGGV-WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109

Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHF 165
             V G  D  ++ +     + +       
Sbjct: 110 YIVTGSRDNTLHVWKLPKESSVPDHGEEH 138

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 9e-07
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 65/234 (27%)

Query: 20  TFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA-------- 71
             + H   ++ V                    N+  +SC+ D  +++WD           
Sbjct: 9   AGKAHDADIFSVSAC-----------------NSFTVSCSGDGYLKVWDNKLLDNENPKD 51

Query: 72  ---SAEVQKLEFGAVPNSLEISRDGTTIT---------------VTHGSCVTFLDANSLE 113
              S  V K     V     I RD   +                +T       +    L+
Sbjct: 52  KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111

Query: 114 LIKEHKVPAQVHSASLLLNSERP---IFVCGGEDLKMYKFDYSTGAE------------- 157
           L+          +     +++R      V        Y + +   A+             
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171

Query: 158 -----IESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI 206
                +ES          V  S  G + A+G  +GT+++ + +  +    ++  
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQ 224

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 156 AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLG 215
           A   + K H   I  V          S S DG L++W   +               +  G
Sbjct: 5   ATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 216 L 216
           L
Sbjct: 63  L 63

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 31/235 (13%), Positives = 61/235 (25%), Gaps = 40/235 (17%)

Query: 4   DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT 63
            G  +  +    D        K  +   D+ K +  A    A      + RL++     T
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 64  VRLWDVSASAEVQK-------------------LEFGAVPNSLEISRDGTTITVTHGSCV 104
             +W     A+                      +       S++IS  G   T  +   V
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV 207

Query: 105 TFLDANSLELIKEHKVPAQVHSASLLLNSE-----RPIFVCGGED--------------- 144
              + ++L  +   +    + + S  + S        +     +                
Sbjct: 208 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267

Query: 145 -LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            +        +         H   +  + F+  GE   S   DG LR W     +
Sbjct: 268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 136 PIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPI----HCVKFSPDGELYASGSEDGTLRL 191
                 G D K+  +D  T   I +   H   I      +     G+  A     G   +
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDV 358

Query: 192 WQTNVGKTYGLWKCIEGGLNNSLGLDSS 219
                G   G+   +   L   + LD S
Sbjct: 359 KFLKKGWRSGMGADLNESL-CCVCLDRS 385

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 25/206 (12%), Positives = 49/206 (23%), Gaps = 28/206 (13%)

Query: 13  DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS 72
           +   +    +                 A           +   ++   + T  +      
Sbjct: 137 EGKAFKRMLDVPDCYHIFPT-------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF 189

Query: 73  AEVQKLEFGAVPNS------LEISRDGTTITVTHGS-CVTFLDANSLELIKEHKVPAQVH 125
               +        S      +  +  G    +   S    FL A       E     +  
Sbjct: 190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249

Query: 126 SASLL-----------LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS 174
               +           L  +R  +        +   D  TG  +  F+     I  +  S
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVS 308

Query: 175 PDGE--LYASGSEDGTLRLWQTNVGK 198
            D +  LYA  + D TL +     G+
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDAESGE 334

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 24/170 (14%), Positives = 44/170 (25%), Gaps = 28/170 (16%)

Query: 57  SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSC-----------VT 105
             A      + D  A   +  ++ G +P +  ++ DG+ I                  V 
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVE 81

Query: 106 FLDANSLELIKEHKVP--------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE 157
             D  +L    + ++P              SL  + +  +F        +   D    A 
Sbjct: 82  VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141

Query: 158 IESFKGH-------FGPIHCVKFSPDG-ELYASGSEDGTLRLWQTNVGKT 199
                           P        DG     +   +GT  +  T V   
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 191

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 16/172 (9%), Positives = 35/172 (20%), Gaps = 45/172 (26%)

Query: 11  QGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD-----FQAKNNTRLISCAEDKTVR 65
                 ++   E                +  +                        + V 
Sbjct: 224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 283

Query: 66  LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVH 125
           + D      + K E G   +S+ +S+D   +                             
Sbjct: 284 VLDAKTGERLAKFEMGHEIDSINVSQDEKPL----------------------------- 314

Query: 126 SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG 177
                      ++     D  +Y  D  +G E+ S          +  +  G
Sbjct: 315 -----------LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 31/201 (15%), Positives = 53/201 (26%), Gaps = 22/201 (10%)

Query: 12  GDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA 71
           G+ G  IG  +G    +    +  D S  A  +  F     +R+        V ++D   
Sbjct: 35  GEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVF-----SRIARGERTDYVEVFDPVT 87

Query: 72  SAEVQKLEF--------GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQ 123
                 +E         G  P    ++ DG T+     S             K  K    
Sbjct: 88  LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGKAFKRMLD 146

Query: 124 VHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFK------GHFGPIHCVKFSPDG 177
           V     +  +    F     D  + K  + T    E              I+   +S   
Sbjct: 147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206

Query: 178 ELYASGSEDGTLRLWQTNVGK 198
                 +  G +     + G 
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGD 227

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 19/192 (9%), Positives = 40/192 (20%), Gaps = 29/192 (15%)

Query: 31  VDINKDASKAASGAADFQA--KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE 88
                        AA         +   S           V A     +        + +
Sbjct: 162 TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ---NCSSQAAQ 218

Query: 89  ISRDGTTITVTHG------------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERP 136
            +  G  +                 +    +D N      ++   A     + L  +   
Sbjct: 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL-KNTDG 277

Query: 137 IFVCGGEDLKMYK--------FDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSED 186
           I +   E  +              S G               +  + DG    YA+ +  
Sbjct: 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGT 336

Query: 187 GTLRLWQTNVGK 198
             L ++     +
Sbjct: 337 EVLDIYDAASDQ 348

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 16/187 (8%), Positives = 32/187 (17%), Gaps = 26/187 (13%)

Query: 40  AASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 99
                A  +  + T     A      +        +       +         G+   + 
Sbjct: 24  DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL-AVAGHSGSDFALA 82

Query: 100 HGS-----------CVTFLDANSLELIKEHKVPAQVHSASL-------LLNSERPIFVCG 141
             S            V   D  +   I + ++P     +            S   +    
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142

Query: 142 GEDLKMYKFDYSTGAEIESFKG-------HFGPIHCVKFSPDGELYASGSEDGTLRLWQT 194
                         ++ +  K                  S    L AS            
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202

Query: 195 NVGKTYG 201
               T  
Sbjct: 203 GAQCTGA 209

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 11/125 (8%), Positives = 31/125 (24%), Gaps = 7/125 (5%)

Query: 12  GDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD----FQAKNNTRLISCAEDKTVRLW 67
                     +G++      +      +  +   +                A  +     
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299

Query: 68  DVSASAEVQKLEFGAVPNSLEISRDGTT---ITVTHGSCVTFLDANSLELIKEHKVPAQV 124
             S       +  G   +++  ++DG +           +   DA S +     ++    
Sbjct: 300 TASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

Query: 125 HSASL 129
            S S+
Sbjct: 360 ESLSV 364

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 14/80 (17%)

Query: 13  DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS 72
             G   G           +   +D +                  + A  + + ++D ++ 
Sbjct: 302 SVGQTSGPISNGHD-SDAIIAAQDGASDN-------------YANSAGTEVLDIYDAASD 347

Query: 73  AEVQKLEFGAVPNSLEISRD 92
            +   +E    P SL +  +
Sbjct: 348 QDQSSVELDKGPESLSVQNE 367

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 137 IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC--VKFSPDGELY-ASGSEDGTLRLW 192
            F   G D  +  +D +T   ++ +      +    V     G     S S DGTL  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 137 IFVCGGEDLKMYKFDYSTG--AEIESFKGHFG-PIHCVKFSP--DGELYASGSEDGTLRL 191
           I    G+   +   D        +  F GH    +  VKFSP    +   SG E G + +
Sbjct: 32  IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 91

Query: 192 WQTNVGKTY 200
           W     K  
Sbjct: 92  WGWTFDKES 100

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 51  NNTRLISCAEDKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTITVTHGSCVT 105
           ++ +  +   D T+R+WDV+ S  VQK        G     +  + +G  I+++    + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 106 FLD 108
           F +
Sbjct: 322 FYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 12/120 (10%), Positives = 32/120 (26%), Gaps = 5/120 (4%)

Query: 3   VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK 62
            D K      D      + +   G     +         +G                   
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS----PKDPNQIYGVLN 272

Query: 63  TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP 121
            +  +D+     ++          +   + G  + +    + +   + ++LE +K  K+P
Sbjct: 273 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 7e-06
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 97  TVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA 156
           T         +D  + +   +          + L + + P  + G  + ++ K+D     
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRK 283

Query: 157 EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK 198
            I++        +CV F   G+    G     L ++  +  +
Sbjct: 284 LIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 137 IFVCGGED--LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLW- 192
           +++   E   + ++  ++     +       G +  +  SPD   LY     +  +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 193 -QTNVGKTYGLWKCIEGGLNNSLGLDSSGH 221
              + G      +    G    +  D  G 
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQ 95

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 56  ISCAEDKTVRLWDVSASAE---VQKLEFGAVPNSLEISRDGTTITVTHGS 102
           I+  E + + +W+++        Q ++       + +S D   + V    
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.72
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.63
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.56
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.29
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.27
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.93
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.61
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.37
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.28
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.03
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.13
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.04
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.49
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.29
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.14
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.17
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.44

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.1e-30  Score=209.51  Aligned_cols=191  Identities=18%  Similarity=0.278  Sum_probs=166.1

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      |+.||+|++|+..+++.+.++.+|.+.|.+++|+|+++++++++.+..+.                              
T Consensus        73 gs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (340)
T d1tbga_          73 ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL  152 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE
T ss_pred             EECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc
Confidence            47899999999999999999999999999999999999999887653221                              


Q ss_pred             ------------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeE
Q psy6442          51 ------------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSL   87 (231)
Q Consensus        51 ------------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v   87 (231)
                                                                ....+++++.|++|++||+++++++..+. +...+.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v  232 (340)
T d1tbga_         153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEE
Confidence                                                      56789999999999999999998887775 45678999


Q ss_pred             EEccCCCEEEE-EcCCeEEEEECCCcceEEeeecc---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC
Q psy6442          88 EISRDGTTITV-THGSCVTFLDANSLELIKEHKVP---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG  163 (231)
Q Consensus        88 ~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~  163 (231)
                      +++|++..+++ +.++.+++|+.........+...   ..+..+  .+++++.++++|+.|+.|++||+.+++.+.++.+
T Consensus       233 ~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV--SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE--EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            99999998766 46789999999888776655432   234444  4588999999999999999999999999999999


Q ss_pred             CCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         164 HFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       164 h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      |.++|++++|+|++.+|+||+.||+|+|||
T Consensus       311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.3e-28  Score=190.49  Aligned_cols=220  Identities=23%  Similarity=0.315  Sum_probs=177.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~   53 (231)
                      ++.||+|++|+..+++++.++++|.+.|.++.|+|++..++++..+...                           .++.
T Consensus        35 ~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (317)
T d1vyhc1          35 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD  114 (317)
T ss_dssp             EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred             EeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCc
Confidence            4789999999999999999999999999999999999999887554211                           1678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEE
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLL  130 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~  130 (231)
                      .+++++.|+++++||+.+++....+.. ...+..++++|++..++. +.++.+++|+.............. .+....+.
T Consensus       115 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  194 (317)
T d1vyhc1         115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA  194 (317)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe
Confidence            899999999999999999988877763 567889999999998765 467899999998877665544321 22222221


Q ss_pred             ------------------ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         131 ------------------LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       131 ------------------~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                                        ....+..+++++.|+.|++||..+++.+.++.+|..+|.+++|+|++++|++++.||.|+||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  274 (317)
T d1vyhc1         195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW  274 (317)
T ss_dssp             CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence                              12235578899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         193 QTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      |+.+++....++...+. .+.++|.+++.
T Consensus       275 d~~~~~~~~~~~~h~~~-V~~~~~s~~~~  302 (317)
T d1vyhc1         275 DYKNKRCMKTLNAHEHF-VTSLDFHKTAP  302 (317)
T ss_dssp             CCTTSCCCEEEECCSSC-EEEEEECSSSS
T ss_pred             ECCCCcEEEEEcCCCCC-EEEEEEcCCCC
Confidence            99999998888765433 34455655554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.8e-28  Score=195.44  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=168.0

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------CCC
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------NNT   53 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~~~   53 (231)
                      .++.+.+|+.++++..+.|.+|++.|.+++|+|+|+++++++.|..++                             +++
T Consensus        36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~  115 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  115 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence            356789999999999999999999999999999999999998774332                             567


Q ss_pred             EEEEEeC--CCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEE--EcCCeEEEEECCCcceEEeeecc-ceeEEE
Q psy6442          54 RLISCAE--DKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV--THGSCVTFLDANSLELIKEHKVP-AQVHSA  127 (231)
Q Consensus        54 ~l~s~s~--D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~  127 (231)
                      .|++++.  |+.++||++..++....+. +...+.+++|+|++..+++  +.++.+++||.++.+.......+ .++..+
T Consensus       116 ~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence            8888886  4669999999888776654 3467899999999885433  46789999999988777666543 345554


Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-------cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         128 SLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-------KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-------~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      .  ++|++..+++++.|+.+++||..++..+..+       .+|.++|++++|+|++++|++++.|++|+|||+++++..
T Consensus       196 ~--~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         196 R--YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             E--ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             c--cCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            4  4889999999999999999999887766544       368999999999999999999999999999999999988


Q ss_pred             eeeeccCC
Q psy6442         201 GLWKCIEG  208 (231)
Q Consensus       201 ~~~~~~~~  208 (231)
                      ..++....
T Consensus       274 ~~l~~~~~  281 (311)
T d1nr0a1         274 KTIPVGTR  281 (311)
T ss_dssp             EEEECCSS
T ss_pred             EEEECCCC
Confidence            87765433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-27  Score=190.88  Aligned_cols=191  Identities=20%  Similarity=0.214  Sum_probs=163.5

Q ss_pred             CCcCCCceeeecc--CCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cC
Q psy6442           1 MCVDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KN   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~--~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~   51 (231)
                      ++.||+|++|+..  +++....+.+|...|..+.|+|++..+++++.+..+                           .+
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3689999999975  556788899999999999999999999988765432                           16


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLL  130 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  130 (231)
                      +..+++++.|+++++||+++++.+....+...+.+++++|++..+++ +.++.+.+||...............+..+.+ 
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~-  273 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF-  273 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE-
T ss_pred             ccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEE-
Confidence            67899999999999999999998888888899999999999998776 4678999999988777655554555655544 


Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC
Q psy6442         131 LNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQT  194 (231)
Q Consensus       131 ~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~  194 (231)
                       +|++.++++++.|+.|++||..+++.+..+. |..+|.+++|+|++++|++++.|++|+|||+
T Consensus       274 -s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         274 -AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             8899999999999999999999998887765 8889999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-26  Score=186.79  Aligned_cols=200  Identities=16%  Similarity=0.210  Sum_probs=167.8

Q ss_pred             cCCCceeeeccCCCeEe-----eeecccccEEEEEECCCCceeEecccccccc---------------------------
Q psy6442           3 VDGKPMLRQGDTGDWIG-----TFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------------   50 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~-----~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------------   50 (231)
                      .||.|++|+..+++...     ...+|.+.|.+++|+|+++++++++.|..+.                           
T Consensus        70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  149 (337)
T d1gxra_          70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence            38999999987654322     2458999999999999999999997764321                           


Q ss_pred             --CCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccceeEE
Q psy6442          51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPAQVHS  126 (231)
Q Consensus        51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~  126 (231)
                        ++..+++++.|++|++||+.++++..... +...+.++++++++..++.+ .++.+++||.++.+.+..+....++..
T Consensus       150 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~  229 (337)
T d1gxra_         150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS  229 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEE
Confidence              66789999999999999999988766654 35678999999999877654 578999999999888888777777766


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +.+  ++++..+++++.++.+++||+.++... ....|..+|++++|+|++++|++++.|++|+|||+.+++.....+.
T Consensus       230 l~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  305 (337)
T d1gxra_         230 LGY--CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  305 (337)
T ss_dssp             EEE--CTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEE--cccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC
Confidence            554  889999999999999999999887754 4567999999999999999999999999999999999998876654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=6.8e-27  Score=191.91  Aligned_cols=204  Identities=16%  Similarity=0.155  Sum_probs=155.3

Q ss_pred             CCcCCCceeeeccCCC--eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~--~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.||.|++|+..+++  ++..|++|.++|.+++|+|++               ++|+|++.|++|+|||+..+.....+
T Consensus        25 ~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~---------------~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          25 CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---------------NRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC---------------CEEEEEECCCeEEEEeeccccccccc
Confidence            3678999999998776  678899999999999999974               45899999999999999877655554


Q ss_pred             Ee---CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEe---eeccceeEEEEEEecCCCCEEEEecCCCeEEEEe
Q psy6442          79 EF---GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKE---HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFD  151 (231)
Q Consensus        79 ~~---~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d  151 (231)
                      ..   ...+.+++|+|+++.++++ .++.+++|+.........   ...+......++.++|++.++++|+.|+++++|+
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~  169 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS  169 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEe
Confidence            43   4578999999999987764 578899887654433222   1112221223344589999999999999999999


Q ss_pred             CCCc------------------ceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCC
Q psy6442         152 YSTG------------------AEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNS  213 (231)
Q Consensus       152 ~~~~------------------~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  213 (231)
                      ....                  ..+....+|...|.+++|+|++++|++++.|++|++||+..++....+...... ...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~s  248 (371)
T d1k8kc_         170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP-LLA  248 (371)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC-EEE
T ss_pred             eccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc-cee
Confidence            7532                  245566789999999999999999999999999999999999988776643222 233


Q ss_pred             CCCCccc
Q psy6442         214 LGLDSSG  220 (231)
Q Consensus       214 ~~~~~~~  220 (231)
                      +.|.+++
T Consensus       249 ~~fs~d~  255 (371)
T d1k8kc_         249 VTFITES  255 (371)
T ss_dssp             EEEEETT
T ss_pred             eeecCCC
Confidence            4444444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=185.23  Aligned_cols=190  Identities=22%  Similarity=0.346  Sum_probs=150.0

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      +|.||+|++|+..+|+++++|++|.+.|++++|+++  .+++++.|...+                              
T Consensus        33 gs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (342)
T d2ovrb2          33 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV  110 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE
T ss_pred             EeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccc
Confidence            478999999999999999999999999999999874  777776543211                              


Q ss_pred             ---------------------------------------------------------------------------CCCEE
Q psy6442          51 ---------------------------------------------------------------------------NNTRL   55 (231)
Q Consensus        51 ---------------------------------------------------------------------------~~~~l   55 (231)
                                                                                                 ++..|
T Consensus       111 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l  190 (342)
T d2ovrb2         111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV  190 (342)
T ss_dssp             EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEE
T ss_pred             cccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEE
Confidence                                                                                       56789


Q ss_pred             EEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccc--eeEEEEEEe
Q psy6442          56 ISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPA--QVHSASLLL  131 (231)
Q Consensus        56 ~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~  131 (231)
                      ++++.|++|++||++.++++..... ...+.++++++  ..++ .+.++.+++||....+.......+.  .....++  
T Consensus       191 ~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--  266 (342)
T d2ovrb2         191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--  266 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--
T ss_pred             EEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeec--
Confidence            9999999999999999888776654 34556666654  4554 4568899999998877666554321  1222233  


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCcceeeec-----cCCCCCeeEEEEcCCCCEEEEeeCCCc----EEEEeCCC
Q psy6442         132 NSERPIFVCGGEDLKMYKFDYSTGAEIESF-----KGHFGPIHCVKFSPDGELYASGSEDGT----LRLWQTNV  196 (231)
Q Consensus       132 ~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-----~~h~~~V~~v~~spd~~~laS~s~d~~----v~iwd~~~  196 (231)
                      ..++.++++|+.|++|++||+++++.++++     .+|.++|++++|+|++.+||+|+.||+    |++||+..
T Consensus       267 ~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         267 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            334568999999999999999999887765     368889999999999999999999997    99999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=188.95  Aligned_cols=193  Identities=19%  Similarity=0.330  Sum_probs=155.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccc---------------------------cCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA---------------------------KNNT   53 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~---------------------------~~~~   53 (231)
                      ++.||+|++|+..+++.+..+.+|.+.|.++.+++++..+++++.+..+                           .++.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            4689999999999999999999999999999999999988888665322                           2678


Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEE--------eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeeec----
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLE--------FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHKV----  120 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~----  120 (231)
                      .|++++.|++|++||..++.....+.        +...+.+++++|++..+++ +.++.+++||............    
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  298 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence            99999999999999999988776653        2356889999999998765 4678999999876543322111    


Q ss_pred             ---------cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEE------cCCCCEEEEeeC
Q psy6442         121 ---------PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKF------SPDGELYASGSE  185 (231)
Q Consensus       121 ---------~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~------spd~~~laS~s~  185 (231)
                               ...+.  ++.+++++.++++|+.|+.|++||+.+++++.++++|.++|.++++      +|++.+|+||+.
T Consensus       299 ~~~~~~~~~~~~v~--~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         299 TCEVTYIGHKDFVL--SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             CEEEEEECCSSCEE--EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             ceeeecccccceEE--EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence                     12233  3445888999999999999999999999999999999999999975      678899999999


Q ss_pred             CCcEEEEeCC
Q psy6442         186 DGTLRLWQTN  195 (231)
Q Consensus       186 d~~v~iwd~~  195 (231)
                      |++|+||+++
T Consensus       377 Dg~I~iW~~~  386 (388)
T d1erja_         377 DCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEEEE
T ss_pred             CCEEEEEeee
Confidence            9999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.6e-25  Score=176.54  Aligned_cols=175  Identities=20%  Similarity=0.319  Sum_probs=148.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-e
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-F   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~   80 (231)
                      +.|+.+++|+..+++.+.++.+|...+.++.|++++               ..|++++.|++|++|+...++....+. +
T Consensus       120 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~  184 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---------------TLIASCSNDQTVRVWVVATKECKAELREH  184 (317)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccCcceeEeecccceeeeEEccCCCcceeeecccCC---------------CEEEEEeCCCeEEEEeeccceeeEEEecC
Confidence            568999999999999999999999999999999874               458899999999999999988776664 3


Q ss_pred             CCcceeEEEccCCC--------------------EEE-EEcCCeEEEEECCCcceEEeeecc-ceeEEEEEEecCCCCEE
Q psy6442          81 GAVPNSLEISRDGT--------------------TIT-VTHGSCVTFLDANSLELIKEHKVP-AQVHSASLLLNSERPIF  138 (231)
Q Consensus        81 ~~~~~~v~~~~~~~--------------------~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  138 (231)
                      ...+..++++|+..                    .+. .+.++.+++|+..+...+..+..+ ..+..+.  ++|++.++
T Consensus       185 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l  262 (317)
T d1vyhc1         185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL--FHSGGKFI  262 (317)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSCE
T ss_pred             CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEE--ECCCCCEE
Confidence            44566777665432                    233 356789999999998887776543 3455444  48899999


Q ss_pred             EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         139 VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       139 ~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ++++.|+.|++||+.+++++.++.+|.++|++++|+|++++|+||+.|++|+|||
T Consensus       263 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         263 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.8e-24  Score=175.63  Aligned_cols=204  Identities=19%  Similarity=0.282  Sum_probs=161.1

Q ss_pred             cCCCceeeeccCCCeEeeee------------------cccccEEEEEECCCCceeEecccccccc--------------
Q psy6442           3 VDGKPMLRQGDTGDWIGTFE------------------GHKGCVWGVDINKDASKAASGAADFQAK--------------   50 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~------------------gH~~~V~~~~~~~~~~~~~s~~~d~~~~--------------   50 (231)
                      .|++|++|+..+|+++.++.                  +|...|.+++|+|+++++++++.|..++              
T Consensus        81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~  160 (388)
T d1erja_          81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ  160 (388)
T ss_dssp             CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc
Confidence            48999999999999988875                  4566799999999999999998764332              


Q ss_pred             -------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc-CCCEEEE-EcCCeEEEEECCCcceE
Q psy6442          51 -------------NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITV-THGSCVTFLDANSLELI  115 (231)
Q Consensus        51 -------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~i~~~d~~~~~~~  115 (231)
                                   ++..+++++.|+.+++||..................+.+.+ ++..++. +.++.+.+|+..+....
T Consensus       161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~  240 (388)
T d1erja_         161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV  240 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccc
Confidence                         56789999999999999999888777766666666666665 5666654 46789999999887766


Q ss_pred             Eeeecc--------ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcc------------eeeeccCCCCCeeEEEEcC
Q psy6442         116 KEHKVP--------AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGA------------EIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       116 ~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~------------~~~~~~~h~~~V~~v~~sp  175 (231)
                      ......        ..+..  +.+++++..+++++.|+.|++||+.++.            .......|...|.+++|+|
T Consensus       241 ~~~~~~~~~~~~h~~~v~~--l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  318 (388)
T d1erja_         241 ERLDSENESGTGHKDSVYS--VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ  318 (388)
T ss_dssp             EEEC------CCCSSCEEE--EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred             eeeccccccccCCCCCEEE--EEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC
Confidence            554321        23444  4458899999999999999999986543            2334567899999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         176 DGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       176 d~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      ++++|++|+.||+|+|||+.+++....+++..+
T Consensus       319 ~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            999999999999999999999999888876544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-25  Score=173.56  Aligned_cols=184  Identities=17%  Similarity=0.268  Sum_probs=141.4

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK------------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~------------------------------   50 (231)
                      +|.||+|+||+..+++++++|++|++.|.+++|  +++++++++.|..+.                              
T Consensus        31 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (293)
T d1p22a2          31 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM  108 (293)
T ss_dssp             EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccce
Confidence            478999999999999999999999999999987  567899987764321                              


Q ss_pred             --------------------------------------CCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-CcceeEEEcc
Q psy6442          51 --------------------------------------NNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISR   91 (231)
Q Consensus        51 --------------------------------------~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-~~~~~v~~~~   91 (231)
                                                            ....+++++.|++|++||..+++.+..+... ..+..+.++ 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-  187 (293)
T d1p22a2         109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-  187 (293)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-
T ss_pred             eecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC-
Confidence                                                  3456778888888888888888777666532 334444443 


Q ss_pred             CCCEEE-EEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCc---------ceeeec
Q psy6442          92 DGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTG---------AEIESF  161 (231)
Q Consensus        92 ~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~---------~~~~~~  161 (231)
                       +..++ ...++.+++||..+...+........... .  ..++...+++|+.|+.|++||+...         ..+..+
T Consensus       188 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (293)
T d1p22a2         188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-C--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  263 (293)
T ss_dssp             -TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-E--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             -CCeEEEecCCCEEEEEecccceeeeeecccceeee-e--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe
Confidence             44444 45688999999998887776654432221 1  2557788999999999999997432         356788


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         162 KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       162 ~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      .+|.++|++++|+  +.+|+|++.|++|+|||
T Consensus       264 ~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         264 VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            8999999999985  56899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=7.3e-25  Score=176.04  Aligned_cols=193  Identities=11%  Similarity=0.082  Sum_probs=151.6

Q ss_pred             CCcCCCceeeeccCCCe--EeeeecccccEEEEEECCCCceeEecccccc--c---------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQ--A---------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~--i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~--~---------------------------   49 (231)
                      ++.||+|++|+..+++.  ...+.+|.+.|.+++|+|+++.+++++.+..  .                           
T Consensus        76 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~  155 (311)
T d1nr0a1          76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK  155 (311)
T ss_dssp             EETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC
T ss_pred             cccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46799999999988764  3568999999999999999999888754210  0                           


Q ss_pred             cCCC-EEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeecc-----
Q psy6442          50 KNNT-RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVP-----  121 (231)
Q Consensus        50 ~~~~-~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-----  121 (231)
                      .++. .|++++.|++|++||+++++....+. +...+.++.++|+++.++++ .++.+.+||..+......+...     
T Consensus       156 ~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         156 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             ccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccc
Confidence            0333 58999999999999999888776664 35678999999999987754 5789999999887766554321     


Q ss_pred             ---ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCC-CeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         122 ---AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFG-PIHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       122 ---~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~-~V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                         ..+..+.  ++|++..+++|+.|+.|++||..++++++++..|.. ....+.+.+++..|++++.||.|++||.+
T Consensus       236 ~h~~~V~~~~--~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         236 AHSGSVFGLT--WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSSSCEEEEE--ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccccccc--cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence               2344444  488999999999999999999999999998876653 23334455566689999999999999964

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-24  Score=174.22  Aligned_cols=195  Identities=16%  Similarity=0.297  Sum_probs=149.7

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-----------------------------C
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-----------------------------N   51 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-----------------------------~   51 (231)
                      |+.||+|++|+..+++++++|++|.+.|.+++|+|+ +.+++++.|..+.                             +
T Consensus        29 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (355)
T d1nexb2          29 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN  107 (355)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETT
T ss_pred             EeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999999999999999985 5788887764332                             4


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeC----------------------CcceeEEEccCCCEEEE-EcCCeEEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFG----------------------AVPNSLEISRDGTTITV-THGSCVTFLD  108 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~-~~~~~i~~~d  108 (231)
                      +..+++++.|++|++||+.+..........                      .........+++..++. ..++.+.+||
T Consensus       108 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeee
Confidence            567999999999999999876543222100                      01112334556666554 4578999999


Q ss_pred             CCCcceEEeeeccc-eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCC
Q psy6442         109 ANSLELIKEHKVPA-QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       109 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~  187 (231)
                      ..+.+.+....... ...  ....++.+..+++++.|+.|++||..++..+..+.+|..+|.+++++|  ++|++++.|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg  263 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIY--STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG  263 (355)
T ss_dssp             TTTTEEEEEECCCSSCEE--EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred             cccccceeeeeccccccc--cccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccc
Confidence            98887776654332 333  334478899999999999999999999999999999999999999875  5899999999


Q ss_pred             cEEEEeCCCCCee
Q psy6442         188 TLRLWQTNVGKTY  200 (231)
Q Consensus       188 ~v~iwd~~~~~~~  200 (231)
                      +|++||+++++..
T Consensus       264 ~i~iwd~~~~~~~  276 (355)
T d1nexb2         264 SIRGWDANDYSRK  276 (355)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             cccccccccccee
Confidence            9999999887653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=2.6e-24  Score=170.37  Aligned_cols=193  Identities=17%  Similarity=0.239  Sum_probs=147.4

Q ss_pred             CCcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccc------------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQA------------------------------   49 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~------------------------------   49 (231)
                      ++.||+|++|+..+|+.++++. +|.+.|.++.|+|+++.++.+. |..+                              
T Consensus        30 ~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  108 (299)
T d1nr0a2          30 ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW-DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS  108 (299)
T ss_dssp             EETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET-TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc-eeeEEEeccCCccccccccccccccccccccccc
Confidence            4789999999999999999985 7999999999999987655442 2111                              


Q ss_pred             cCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEe--eeccceeEE
Q psy6442          50 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKE--HKVPAQVHS  126 (231)
Q Consensus        50 ~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~--~~~~~~~~~  126 (231)
                      .++. ++.++.++.+++|+...   .........+..++++|++..+++ +.++.+.+||..+......  ...+..+..
T Consensus       109 ~~g~-~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~  184 (299)
T d1nr0a2         109 ADGD-IAVAACYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS  184 (299)
T ss_dssp             TTSS-CEEEEESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred             cccc-ccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1333 34445567888888532   233445567788999999998766 4678999999876654332  223345555


Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCccee---eeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         127 ASLLLNSERPIFVCGGEDLKMYKFDYSTGAEI---ESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       127 ~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~---~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      +.  +++++..+++++.++.|++||..++..+   ..+.+|..+|++++|+|++.+|++++.|++|+|||+++++..
T Consensus       185 ~~--~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         185 VA--FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             EE--ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            44  4889999999999999999999876554   456789999999999999999999999999999999877643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.7e-24  Score=171.84  Aligned_cols=175  Identities=21%  Similarity=0.333  Sum_probs=139.3

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDG   93 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~   93 (231)
                      .+..++|+||++.|++++|+|++               .+|+||+.||+|+|||+.+++.+..+.. ...+.+++|+|++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~  109 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS
T ss_pred             eeeeEEECCCCCCEEEEEECCCC---------------CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc
Confidence            46788999999999999999974               4589999999999999999998888764 5678999999999


Q ss_pred             CEEEEE-cCCeEEEEECCCcce----EEeeecc----------------------------------------ceeEEEE
Q psy6442          94 TTITVT-HGSCVTFLDANSLEL----IKEHKVP----------------------------------------AQVHSAS  128 (231)
Q Consensus        94 ~~~~~~-~~~~i~~~d~~~~~~----~~~~~~~----------------------------------------~~~~~~~  128 (231)
                      ..++.+ .++.+.+|+......    ......+                                        .......
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS  189 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence            987654 577888887543221    1100000                                        0000112


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      ....+....+++++.|+.|++||.++++.+.++.+|..+|++++|+|++++|++++.|+.|++|++...+......
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence            2235667788999999999999999999999999999999999999999999999999999999999888765553

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-24  Score=178.17  Aligned_cols=207  Identities=17%  Similarity=0.276  Sum_probs=148.5

Q ss_pred             CcCCCceeeeccCCCeEeee----------ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCC
Q psy6442           2 CVDGKPMLRQGDTGDWIGTF----------EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSA   71 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l----------~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~   71 (231)
                      +.||++++|+...++....+          ..|...++.+.|.+++..          ..+.++++++.|+++++|++..
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR----------LLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------CEEEEEEETTSCEEEEEEES
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCc----------ccccEEEEEcCCCcEEEEEeec
Confidence            46899999987544322221          235567888888776432          2346789999999999999743


Q ss_pred             CC-----------ceEEE----E----eCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec-------cceeE
Q psy6442          72 SA-----------EVQKL----E----FGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV-------PAQVH  125 (231)
Q Consensus        72 ~~-----------~~~~~----~----~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~  125 (231)
                      ..           ....+    .    ....+.+++++|++..+..+.++.|++||..+.+.+.....       ..++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  235 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE
Confidence            21           01111    1    12347789999998544455789999999998877665442       23455


Q ss_pred             EEEEEecCCCCEEEEecCCC---eEEEEeCCCcceeeec-------------cCCCCCeeEEEEcCCCCEEEEeeCCCcE
Q psy6442         126 SASLLLNSERPIFVCGGEDL---KMYKFDYSTGAEIESF-------------KGHFGPIHCVKFSPDGELYASGSEDGTL  189 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~d~---~i~~~d~~~~~~~~~~-------------~~h~~~V~~v~~spd~~~laS~s~d~~v  189 (231)
                      ++.  ++|++.++++|+.|.   .|++||+.+++.+..+             .+|.+.|++++|+||+++|+|++.|++|
T Consensus       236 ~l~--~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         236 SVK--FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEE--ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             Ecc--cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            544  489999999999886   5899999988776655             4899999999999999999999999999


Q ss_pred             EEEeCCCCCeeeeeeccCCccc---CCCCCCccc
Q psy6442         190 RLWQTNVGKTYGLWKCIEGGLN---NSLGLDSSG  220 (231)
Q Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~  220 (231)
                      +|||+.+|+.++.++++.+...   ..+++.++|
T Consensus       314 ~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             EEEECCCCCEEEEECCcCCcccCCccEEEECCCC
Confidence            9999999999888876554432   244555544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=4.8e-23  Score=162.94  Aligned_cols=172  Identities=17%  Similarity=0.274  Sum_probs=127.8

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE--eCCcceeEEEccC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRD   92 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~~~~~~~v~~~~~   92 (231)
                      |++.+++.||++.|.+++|+|+++               +|+||+.|++|++||+.++++...+.  +...+.+++|+|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~---------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~   66 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGK---------------TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK   66 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             CccceEcCCCCCCcEEEEECCCCC---------------EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc
Confidence            788999999999999999999855               46778888888888887776665542  3456777888888


Q ss_pred             CCEEEEEcCCeEEEEECCCcc-----e-EEee---------------------------------eccceeEEEEEEecC
Q psy6442          93 GTTITVTHGSCVTFLDANSLE-----L-IKEH---------------------------------KVPAQVHSASLLLNS  133 (231)
Q Consensus        93 ~~~~~~~~~~~i~~~d~~~~~-----~-~~~~---------------------------------~~~~~~~~~~~~~~~  133 (231)
                      +..+.++.++.+++|+.....     . ...+                                 ..+......++.++|
T Consensus        67 g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~  146 (299)
T d1nr0a2          67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN  146 (299)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             ceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888777778777643210     0 0000                                 000001122334578


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeee
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~  201 (231)
                      ++..+++|+.|+.+++||+.+++... ....|..+|++++|+|++.+|++++.|+.|++||+.+++...
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999998766543 345799999999999999999999999999999998876653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.9e-23  Score=166.51  Aligned_cols=193  Identities=13%  Similarity=0.205  Sum_probs=151.0

Q ss_pred             CCcCCCceeeeccCCCeE--------eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCC
Q psy6442           1 MCVDGKPMLRQGDTGDWI--------GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSAS   72 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i--------~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~   72 (231)
                      ++.||+|++|+...++.+        ..+..|.++|.++.|++++++++.             ++.+.|+.+++|+..++
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-------------~~~~~~~~~~~~~~~~~  149 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV-------------VGEGRDNFGVFISWDSG  149 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE-------------EECCSSCSEEEEETTTC
T ss_pred             EeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce-------------eeccccceEEEEeeccc
Confidence            367999999998665433        235578899999999998765432             23345788999999998


Q ss_pred             CceEEEE-eCCcceeEEEccCCCEE-E-EEcCCeEEEEECCCcceEEeeec----cceeEEEEEEecCC-CCEEEEecCC
Q psy6442          73 AEVQKLE-FGAVPNSLEISRDGTTI-T-VTHGSCVTFLDANSLELIKEHKV----PAQVHSASLLLNSE-RPIFVCGGED  144 (231)
Q Consensus        73 ~~~~~~~-~~~~~~~v~~~~~~~~~-~-~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~g~~d  144 (231)
                      +++..+. +...+.+++|+|++..+ + .+.++.+++||..+.+.......    ...+..+.  ++|+ +.++++++.|
T Consensus       150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~--~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--FSPDSGEFVITVGSD  227 (325)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE--ECSTTCCEEEEEETT
T ss_pred             ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee--eccccceeccccccc
Confidence            8877765 45678999999998753 3 45689999999887766554332    12344444  4775 6789999999


Q ss_pred             CeEEEEeCCCcceeeeccCCCCCeeEEEEc---CCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFS---PDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~s---pd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      +.|++||.++++.+.++.+|..++.++.|+   |++++|++++.|++|+|||+++++....++....
T Consensus       228 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            999999999999999999999988877777   7899999999999999999999998887765443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-22  Score=160.56  Aligned_cols=219  Identities=13%  Similarity=0.118  Sum_probs=149.0

Q ss_pred             CCcCCCceeeeccCCCeEee---eecccccEEEEEECCC-CceeEecccccccc--------------------------
Q psy6442           1 MCVDGKPMLRQGDTGDWIGT---FEGHKGCVWGVDINKD-ASKAASGAADFQAK--------------------------   50 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~---l~gH~~~V~~~~~~~~-~~~~~s~~~d~~~~--------------------------   50 (231)
                      +|.||+||+|+..++.....   ..+|.+.|.+++|+|+ +..+++++.|..+.                          
T Consensus        29 ~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d1yfqa_          29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRIC  108 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred             EECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccc
Confidence            46899999999876654333   3479999999999986 45788887664321                          


Q ss_pred             --CCCEEEEEeCCCCEEEEeCCCCCceEEEE--e-----CCcceeEEEccCCCEEEE-EcCCeEEEEECCCcceEEeee-
Q psy6442          51 --NNTRLISCAEDKTVRLWDVSASAEVQKLE--F-----GAVPNSLEISRDGTTITV-THGSCVTFLDANSLELIKEHK-  119 (231)
Q Consensus        51 --~~~~l~s~s~D~ti~iwd~~~~~~~~~~~--~-----~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~-  119 (231)
                        +...+++++.|+++++||++.+.......  .     ........+.+.+..++. +.++.+++|+........... 
T Consensus       109 ~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  188 (342)
T d1yfqa_         109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee
Confidence              56788999999999999986554433222  1     122345566676665544 568899999987655432221 


Q ss_pred             -c--cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce---------------eeeccCCCCCeeEEEEcCCCCEEE
Q psy6442         120 -V--PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE---------------IESFKGHFGPIHCVKFSPDGELYA  181 (231)
Q Consensus       120 -~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~---------------~~~~~~h~~~V~~v~~spd~~~la  181 (231)
                       .  ....... .....++..+++++.++.+.+|+......               .....+|..+|++++|+|++++||
T Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la  267 (342)
T d1yfqa_         189 ESGLKYQIRDV-ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             ECSCSSCEEEE-EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             ecccccceeee-EeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE
Confidence             1  1122222 22345677889999999999998753321               112246778899999999999999


Q ss_pred             EeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         182 SGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       182 S~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ||+.||+|+|||+++++.........+..+  +++.++|.+
T Consensus       268 sg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~--~~~s~~~~~  306 (342)
T d1yfqa_         268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNI  306 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEECCCCSSSEE--EEEEECSSE
T ss_pred             EECCCCEEEEEECCCCcEEEEecCCCCCEE--EEEEeCCCE
Confidence            999999999999999987766654434333  444444443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.1e-22  Score=156.21  Aligned_cols=196  Identities=15%  Similarity=0.172  Sum_probs=138.8

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------CCCEEEEEeCC
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------NNTRLISCAED   61 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------~~~~l~s~s~D   61 (231)
                      ++.||+|++|+..++     .++|.+.|.+++++++. .+++++.|..++                   ++..++..+.+
T Consensus        27 gs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (287)
T d1pgua2          27 GSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND  100 (287)
T ss_dssp             EETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred             EeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeec
Confidence            467888888887654     46788888888887654 456665543221                   33444445566


Q ss_pred             CCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCE
Q psy6442          62 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPI  137 (231)
Q Consensus        62 ~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  137 (231)
                      +.+.+|+...++.+..+......  .++++++..++++.  ++.+++|+............+  .++..+  .++|++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~  176 (287)
T d1pgua2         101 DDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETY  176 (287)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSE
T ss_pred             ccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE--EeccCccc
Confidence            67778888777777766655443  45667777666543  357899998766554444333  234444  45899999


Q ss_pred             EEEecCCCeEEEEeCCCcceee-eccCCCCCeeEEEEcCC----------CCEEEEeeCCCcEEEEeCCCCC-eeeeeec
Q psy6442         138 FVCGGEDLKMYKFDYSTGAEIE-SFKGHFGPIHCVKFSPD----------GELYASGSEDGTLRLWQTNVGK-TYGLWKC  205 (231)
Q Consensus       138 ~~~g~~d~~i~~~d~~~~~~~~-~~~~h~~~V~~v~~spd----------~~~laS~s~d~~v~iwd~~~~~-~~~~~~~  205 (231)
                      +++|+.|+.|++||..++..+. .+.+|.++|++++|+|+          +.+|+|++.|++|+|||++++. ....+++
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~  256 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA  256 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred             cccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC
Confidence            9999999999999998887654 47899999999999985          4689999999999999997743 4444444


Q ss_pred             c
Q psy6442         206 I  206 (231)
Q Consensus       206 ~  206 (231)
                      +
T Consensus       257 h  257 (287)
T d1pgua2         257 H  257 (287)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.3e-21  Score=159.99  Aligned_cols=178  Identities=11%  Similarity=0.097  Sum_probs=137.6

Q ss_pred             CCcCCCceeeeccCCCeE--eeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEE
Q psy6442           1 MCVDGKPMLRQGDTGDWI--GTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKL   78 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i--~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~   78 (231)
                      ++.|++|++|+..+++..  ..+.+|...|.+++|+|++               ..|++++.|+++++|++.........
T Consensus        69 ~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~---------------~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---------------KKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS---------------SEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EECCCeEEEEeeccccccccccccccccccccccccccc---------------ccceeecccCcceeeeeecccccccc
Confidence            467999999999877654  4457899999999999974               45889999999999998766554333


Q ss_pred             E-----eCCcceeEEEccCCCEEEE-EcCCeEEEEECCCcce------------------EEeee-ccceeEEEEEEecC
Q psy6442          79 E-----FGAVPNSLEISRDGTTITV-THGSCVTFLDANSLEL------------------IKEHK-VPAQVHSASLLLNS  133 (231)
Q Consensus        79 ~-----~~~~~~~v~~~~~~~~~~~-~~~~~i~~~d~~~~~~------------------~~~~~-~~~~~~~~~~~~~~  133 (231)
                      .     +...+.+++|+|++..++. +.++.+++|+......                  +.... ....+..  +.++|
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~  211 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG--VCFSA  211 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--EEECS
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE--EEeec
Confidence            2     2457889999999998765 4689999999754321                  11111 1122344  34488


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      ++..+++++.|+.|++||..++..+..+.+|..+|.+++|+|++.+|++|+ |+.+++|....
T Consensus       212 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            999999999999999999999999999999999999999999998888765 67777765433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.9e-21  Score=156.49  Aligned_cols=178  Identities=17%  Similarity=0.190  Sum_probs=137.5

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--   80 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--   80 (231)
                      .|+.+++|+.++|+.+..+++|.+.|.++.|+|++.              ..+++++.|+++++||....+....+..  
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP--------------MRSMTVGDDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS--------------CEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             ccceEEEEeecccccceeeeeccccccccccccccc--------------ceEEEeecccccccccccccccceeccccc
Confidence            467889999999999999999999999999999753              3478999999999999988766555432  


Q ss_pred             --CCcceeEEEccCC-CEEEE-EcCCeEEEEECCCcceEEeeeccc-eeEEEEEE-ecCCCCEEEEecCCCeEEEEeCCC
Q psy6442          81 --GAVPNSLEISRDG-TTITV-THGSCVTFLDANSLELIKEHKVPA-QVHSASLL-LNSERPIFVCGGEDLKMYKFDYST  154 (231)
Q Consensus        81 --~~~~~~v~~~~~~-~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g~~d~~i~~~d~~~  154 (231)
                        ...+.+++|+|+. ..++. +.++.|++||..+.+.+..+..+. ++....+. ..+++.++++++.|+.|++||+++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence              3458899999975 55543 568899999999888877765432 22222221 126788999999999999999999


Q ss_pred             cceeeeccCCCCC--eeEEEEcCC-CCEEEEeeCCCcEEEEeC
Q psy6442         155 GAEIESFKGHFGP--IHCVKFSPD-GELYASGSEDGTLRLWQT  194 (231)
Q Consensus       155 ~~~~~~~~~h~~~--V~~v~~spd-~~~laS~s~d~~v~iwd~  194 (231)
                      ++.+..+..|...  +..+++.+. +.+|+|++.|++|+|||+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9988887666544  445555543 347899999999999995

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-20  Score=147.75  Aligned_cols=194  Identities=17%  Similarity=0.235  Sum_probs=119.6

Q ss_pred             eeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------CCCEEEEEeCCCCE
Q psy6442          10 RQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------NNTRLISCAEDKTV   64 (231)
Q Consensus        10 ~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------~~~~l~s~s~D~ti   64 (231)
                      |+....+..++|+||++.|.+ +++++|++++||+.|..++                         ++..|++++.|+++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~   79 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL   79 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccc
Confidence            455566788899999999865 3556666666665553322                         23456666666666


Q ss_pred             EEEeCCCCCceEEEEeCCcc---------------------------------------eeEEEccC-CCEEEEEcCCeE
Q psy6442          65 RLWDVSASAEVQKLEFGAVP---------------------------------------NSLEISRD-GTTITVTHGSCV  104 (231)
Q Consensus        65 ~iwd~~~~~~~~~~~~~~~~---------------------------------------~~v~~~~~-~~~~~~~~~~~i  104 (231)
                      ++|+................                                       ......+. ...+..+.++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            66665443221111100000                                       00001111 112222334555


Q ss_pred             EEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEee
Q psy6442         105 TFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       105 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s  184 (231)
                      ++||......+.....+.. ....  ..+++..+++++.|+.|++||...++.+..+.+|...|.++++++  ++|++++
T Consensus       160 ~~~d~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s  234 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTN-RVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGN  234 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSS-CEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEE
T ss_pred             EEeecccceeeEEEcCccc-cccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEc
Confidence            5555554444433322211 1112  234677899999999999999999999999999999999887765  5999999


Q ss_pred             CCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         185 EDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       185 ~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      .|+.|+|||....+..........+
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~  259 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKH  259 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSC
T ss_pred             CCCEEEEEeccccccccccccccee
Confidence            9999999999998877666554433

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.8e-21  Score=157.31  Aligned_cols=165  Identities=19%  Similarity=0.217  Sum_probs=124.6

Q ss_pred             CcCCCceeeeccCCC------------------eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCC
Q psy6442           2 CVDGKPMLRQGDTGD------------------WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKT   63 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~------------------~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~t   63 (231)
                      +.||++++|+.....                  .......|...+.+++|+|++                .|+||+.|++
T Consensus       143 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----------------~lasgs~Dg~  206 (393)
T d1sq9a_         143 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----------------LIATGFNNGT  206 (393)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----------------EEEEECTTSE
T ss_pred             cCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC----------------EEEEEeCCCc
Confidence            468999999863221                  112223455667888888753                5899999999


Q ss_pred             EEEEeCCCCCceEEEE-------eCCcceeEEEccCCCEEEEEc-CC---eEEEEECCCcceEEeeec------------
Q psy6442          64 VRLWDVSASAEVQKLE-------FGAVPNSLEISRDGTTITVTH-GS---CVTFLDANSLELIKEHKV------------  120 (231)
Q Consensus        64 i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~-~~---~i~~~d~~~~~~~~~~~~------------  120 (231)
                      |+|||+.+++++..++       +...+.+++|+|+++.++.+. ++   .+++||..+.+.+.....            
T Consensus       207 i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~  286 (393)
T d1sq9a_         207 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  286 (393)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             EEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeee
Confidence            9999999988876664       245789999999999887753 33   589999988777665431            


Q ss_pred             --cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCee----EEEEcCCCCEEEEee
Q psy6442         121 --PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIH----CVKFSPDGELYASGS  184 (231)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~----~v~~spd~~~laS~s  184 (231)
                        ...+..+  .++|+++++++++.|++|++||++++++++++++|..+|.    .++|+|++..+++++
T Consensus       287 gH~~~V~~l--~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         287 AHSSWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             SBSSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cccCceeee--ccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence              1234444  4589999999999999999999999999999999988775    477888877665444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.1e-20  Score=146.86  Aligned_cols=172  Identities=18%  Similarity=0.229  Sum_probs=131.1

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEecccccccc---------------------CCCEEEEEeCCCCEEEEeCCCCC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK---------------------NNTRLISCAEDKTVRLWDVSASA   73 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~---------------------~~~~l~s~s~D~ti~iwd~~~~~   73 (231)
                      ++++++|+||.++|.+++|+|    +++++.|..++                     ++..+++++.|+++++|++..  
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~--   76 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK--   76 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE--
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccc--
Confidence            578999999999999999987    77777664332                     456678888888888887542  


Q ss_pred             ceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCC-CeEEEEeC
Q psy6442          74 EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGED-LKMYKFDY  152 (231)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~~~d~  152 (231)
                          ..+...+..+++.+++..++...++.+.+|+....+.+.......+...  +  .+++..++.++.+ ..+++|++
T Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          77 ----HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--V--SLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             ----EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE--E--EECSSEEEEEETTTSCEEEEET
T ss_pred             ----cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeee--e--eccCcceeeeccccceeeeeec
Confidence                2345567778888888887777788888888888777776665544332  2  3455566666655 57999998


Q ss_pred             CCcceeeec-cCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         153 STGAEIESF-KGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       153 ~~~~~~~~~-~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      ........+ ..|..+|.+++|+|++.+|++++.|+.|++||+.+++..
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence            766655544 457889999999999999999999999999999988754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.9e-20  Score=148.38  Aligned_cols=171  Identities=18%  Similarity=0.238  Sum_probs=133.0

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe-
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~-   80 (231)
                      +.|+.+++|+..+++.+..+.+|...+.++.+++++               ..+++++.|++|++||..++..+..+.. 
T Consensus       178 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER---------------KRCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT---------------TEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cccceeeeeecccccceeeeeccccccccccccccc---------------eeeecccccceEEeeeccccccccccccc
Confidence            468899999999999999999999999999999874               4588999999999999999988877753 


Q ss_pred             CCcceeEEEccCCCEEE-EEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceee
Q psy6442          81 GAVPNSLEISRDGTTIT-VTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIE  159 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~  159 (231)
                      ...+.++++++  ..++ .+.++.|++||..+.......... .+..... .++++.++++| .|++|++||++++++++
T Consensus       243 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~g-~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         243 TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHT-NLSAITT-FYVSDNILVSG-SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECT-TCCCCCE-EEECSSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred             ccccccccccc--ceeeeeecccccccccccccceecccccC-CceEEEE-EcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            56778888865  4544 456889999999876554332221 1111111 24566666665 58899999999999885


Q ss_pred             -eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         160 -SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       160 -~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                       .+.+|.++|++++|+|+ .++++++.||+++||-
T Consensus       318 ~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         318 ANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             SCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence             56889999999999997 5788999999976653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=9.4e-18  Score=131.48  Aligned_cols=199  Identities=16%  Similarity=0.153  Sum_probs=139.6

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeE-ecccccccc------------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAK------------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~-s~~~d~~~~------------------------------   50 (231)
                      +.|++|.+||..+++.+++++.. +....++|+|+|++++ ++..+..+.                              
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   87 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ   87 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred             CCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccc
Confidence            57899999999999999998754 4568999999999775 443321110                              


Q ss_pred             --------------------------------------CCCE-EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEcc
Q psy6442          51 --------------------------------------NNTR-LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR   91 (231)
Q Consensus        51 --------------------------------------~~~~-l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~   91 (231)
                                                            ++.. ++++..|+++.+|+..+.+....+.....+..+.++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP  167 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             ccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec
Confidence                                                  2222 2333444555555555555555555555677788888


Q ss_pred             CCCEEEEEc--CCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEe---cCCCeEEEEeCCCcceeeeccCCCC
Q psy6442          92 DGTTITVTH--GSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCG---GEDLKMYKFDYSTGAEIESFKGHFG  166 (231)
Q Consensus        92 ~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~~~d~~~~~~~~~~~~h~~  166 (231)
                      ++..+++..  ...+.+++....................+  .+++..++.+   ..+++|++||..+++.+..+..+ .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~  244 (301)
T d1l0qa2         168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV--NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P  244 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE--CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S
T ss_pred             cccceeeecccccccccccccceeeeecccccCCcceeec--cccccccccccccceeeeeeeeecCCCeEEEEEcCC-C
Confidence            888776653  35677777777666666555544444333  6677765543   34478999999999988887644 4


Q ss_pred             CeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         167 PIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       167 ~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      .+.+++|+|||++| ++++.|++|+|||+.+++....+.
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            67999999999865 788899999999999999887775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.1e-18  Score=130.73  Aligned_cols=168  Identities=21%  Similarity=0.316  Sum_probs=109.7

Q ss_pred             eEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE-eCCcceeEEEccCCCE
Q psy6442          17 WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT   95 (231)
Q Consensus        17 ~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~   95 (231)
                      .+..+.+|...|++++|  ++++               |+|||.||+|+|||+.+++++.++. +...+.++++.+ ...
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~---------------l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l   68 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQK---------------IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVI   68 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSE---------------EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCE---------------EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-cee
Confidence            45667788999998865  4444               5666666666666666666555554 344555666543 355


Q ss_pred             EEEEcCCeEEEEECCCcceEEeeec------------------------------------------cceeEEEEEEecC
Q psy6442          96 ITVTHGSCVTFLDANSLELIKEHKV------------------------------------------PAQVHSASLLLNS  133 (231)
Q Consensus        96 ~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~  133 (231)
                      +..+.++.+.+|+............                                          .........  ..
T Consensus        69 ~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  146 (293)
T d1p22a2          69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DF  146 (293)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EE
T ss_pred             ecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccc--ee
Confidence            5555565666655443322211100                                          000000111  22


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         134 ERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       134 ~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      ....+.+++.|+.+++||..+++.+..+.+|...|..+.++  +.++++++.|++|+|||+++++....++..
T Consensus       147 ~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc
Confidence            34456788899999999999999999999999998887775  458999999999999999999887766543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=3.6e-18  Score=142.01  Aligned_cols=197  Identities=9%  Similarity=0.021  Sum_probs=130.4

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccccc-------------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK-------------------------------   50 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~-------------------------------   50 (231)
                      +.||+|++||..+++.+.++..|. .+..++|+|||+++++++.|..++                               
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s  117 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG  117 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence            578999999999999999999874 589999999999999887653221                               


Q ss_pred             -CCCEE-EEEeCCCCEEEEeCCCCCceEEEEeC------------CcceeEEEccCCCEEEEEc--CCeEEEEECCCcce
Q psy6442          51 -NNTRL-ISCAEDKTVRLWDVSASAEVQKLEFG------------AVPNSLEISRDGTTITVTH--GSCVTFLDANSLEL  114 (231)
Q Consensus        51 -~~~~l-~s~s~D~ti~iwd~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~  114 (231)
                       ++++| +++..++++++||..++.+...+...            .....+..++++..++...  .+.+.+++..+...
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc
Confidence             56665 56668899999999998877655421            2234556667776655432  24455554433322


Q ss_pred             EE--eeeccceeEEEEEEecCCCCEE------------------------------------------------EEecCC
Q psy6442         115 IK--EHKVPAQVHSASLLLNSERPIF------------------------------------------------VCGGED  144 (231)
Q Consensus       115 ~~--~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~g~~d  144 (231)
                      +.  ..........  +.++++++++                                                +..+.+
T Consensus       198 ~~~~~~~~~~~~~~--~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  275 (426)
T d1hzua2         198 LTVTSIGAAPFLAD--GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD  275 (426)
T ss_dssp             CEEEEEECCSSEEE--EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTT
T ss_pred             eeeEEeccCCccEe--eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCC
Confidence            11  1111111111  1112222221                                                123345


Q ss_pred             CeEEEEeCCC-------cceeeeccCCCCCeeEEEEcCCCCEEE-------EeeCCCcEEEEeCCCCCeee
Q psy6442         145 LKMYKFDYST-------GAEIESFKGHFGPIHCVKFSPDGELYA-------SGSEDGTLRLWQTNVGKTYG  201 (231)
Q Consensus       145 ~~i~~~d~~~-------~~~~~~~~~h~~~V~~v~~spd~~~la-------S~s~d~~v~iwd~~~~~~~~  201 (231)
                      +.+..|+...       .+...++++|...+..++|+||+++|+       +++.|++|+|||+.+++...
T Consensus       276 ~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         276 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             CEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             ceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence            6666665533       245677889999999999999999999       46678999999999987643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=3.3e-18  Score=137.32  Aligned_cols=176  Identities=9%  Similarity=-0.026  Sum_probs=137.3

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCC--CCEEEEeCCCCCceEEEEe
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAED--KTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D--~ti~iwd~~~~~~~~~~~~   80 (231)
                      .+|+|++|+..+|+.++.  +|.+.|.++.|+|||+.               |++++.|  ..|++||..+++......+
T Consensus        22 ~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~---------------l~~~~~~~g~~v~v~d~~~~~~~~~~~~   84 (360)
T d1k32a3          22 SRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKV---------------AFIHGTREGDFLGIYDYRTGKAEKFEEN   84 (360)
T ss_dssp             ETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEE---------------EEEEEETTEEEEEEEETTTCCEEECCCC
T ss_pred             ECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCE---------------EEEEEcCCCCEEEEEECCCCcEEEeeCC
Confidence            468999999988887764  69999999999998655               4555444  3799999999887666666


Q ss_pred             CCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceEEeeeccc-eeEEEEEEecCCCCEEEEe----------cCCCeEE
Q psy6442          81 GAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSERPIFVCG----------GEDLKMY  148 (231)
Q Consensus        81 ~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g----------~~d~~i~  148 (231)
                      ...+..++|+|+++.++.. .++.+.+|+............+. ......  ++|+++.++.+          ..+..++
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT--ISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE--ECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh--hccceeeeeeeccccccceeecccccee
Confidence            7789999999999987764 56789999998887766655432 333333  48889888753          3445789


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGK  198 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~  198 (231)
                      +|+..+++.... ..|...+..++|+|||++|++++.++.+++|+.....
T Consensus       163 v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         163 VYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             eeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            999988765444 4577788999999999999999999999999976554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=5.2e-17  Score=128.84  Aligned_cols=204  Identities=13%  Similarity=0.068  Sum_probs=143.7

Q ss_pred             CcCCCceeeeccCCCeEeeeecc--cccEEEEEECCCCceeE-eccccccc-----------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAA-SGAADFQA-----------------------------   49 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH--~~~V~~~~~~~~~~~~~-s~~~d~~~-----------------------------   49 (231)
                      +.|++|++||..+++.++++..+  ...+.++.|+|||++++ ++..+..+                             
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v   87 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence            57899999999999999998753  35678999999998764 33322110                             


Q ss_pred             ---cCCCEEEEEe------------CCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcce
Q psy6442          50 ---KNNTRLISCA------------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLEL  114 (231)
Q Consensus        50 ---~~~~~l~s~s------------~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~  114 (231)
                         .+++.+++++            .+..+.+||..+++....+.....+..++++|+++.+++.. +...+||..+.+.
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~  166 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTL  166 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEE
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcE
Confidence               1345555554            35677788888888777777777788999999999887764 3456677655443


Q ss_pred             EEeeecc-------------------------------------------------------ceeE----------EEEE
Q psy6442         115 IKEHKVP-------------------------------------------------------AQVH----------SASL  129 (231)
Q Consensus       115 ~~~~~~~-------------------------------------------------------~~~~----------~~~~  129 (231)
                      .......                                                       ....          ....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (337)
T d1pbyb_         167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST  246 (337)
T ss_dssp             EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             EEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEE
Confidence            3221110                                                       0000          0111


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         130 LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      ..++++..++.+  ++.+++||..+++.+..+. +...+.+++|+|||++|++++.|++|+|||+.+++.....+...++
T Consensus       247 ~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~  323 (337)
T d1pbyb_         247 AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA  323 (337)
T ss_dssp             EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGGC
T ss_pred             EecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCCCC
Confidence            223444444333  5789999999999888775 5667899999999999999999999999999999999888754433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.1e-18  Score=134.04  Aligned_cols=170  Identities=8%  Similarity=0.036  Sum_probs=124.3

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE----EEeCCcceeEEEcc
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK----LEFGAVPNSLEISR   91 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~----~~~~~~~~~v~~~~   91 (231)
                      +++..+++|++.|.+++|+|++               .+|+|||.|++|+|||+..+.....    ..+...+.+++|+|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~---------------~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~   66 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID   66 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCC---------------CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC
Confidence            5677889999999999999974               4589999999999999976654322    34678899999999


Q ss_pred             CCCE-EEE-EcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcce----eeeccCC-
Q psy6442          92 DGTT-ITV-THGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAE----IESFKGH-  164 (231)
Q Consensus        92 ~~~~-~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~----~~~~~~h-  164 (231)
                      ++.. ++. +.++.+.+|+........................++...+++++.++++++||++.+..    ......+ 
T Consensus        67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccc
Confidence            8654 433 46789999998876655544332221111222355677889999999999999865432    2233333 


Q ss_pred             -CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         165 -FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       165 -~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                       ........+.+++..+++++.|+.|++|++...+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  183 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD  183 (342)
T ss_dssp             SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred             ccceeeeeeeeccCCceeeecCCCcEEEEecccCccc
Confidence             234556778889999999999999999999877653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=1.3e-16  Score=126.97  Aligned_cols=194  Identities=13%  Similarity=0.065  Sum_probs=132.2

Q ss_pred             CcCCCceeeeccCCCeEeeee-cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF   80 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~   80 (231)
                      +.|++|.+||..+++.+.+++ .|...+.++.|+|||+++              +++++.+++|++||+.+++.+..+..
T Consensus        15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l--------------~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_          15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA--------------YVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE--------------EEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEE--------------EEEECCCCcEEEEeCccCeeeeeecc
Confidence            568999999999999999987 456677899999987653              46777899999999999988777654


Q ss_pred             C-------CcceeEEEccCCCEEEEEc-------------CCeEEEEECCC-----------------------------
Q psy6442          81 G-------AVPNSLEISRDGTTITVTH-------------GSCVTFLDANS-----------------------------  111 (231)
Q Consensus        81 ~-------~~~~~v~~~~~~~~~~~~~-------------~~~i~~~d~~~-----------------------------  111 (231)
                      .       ..+..++++||++.+++..             +..+.+++..+                             
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            3       2356888899988775431             22334443222                             


Q ss_pred             ------------cceEEeeeccce----------------------e---------------------------------
Q psy6442         112 ------------LELIKEHKVPAQ----------------------V---------------------------------  124 (231)
Q Consensus       112 ------------~~~~~~~~~~~~----------------------~---------------------------------  124 (231)
                                  .+.+........                      .                                 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                        111111100000                      0                                 


Q ss_pred             --E----------EEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         125 --H----------SASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       125 --~----------~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                        .          .......+++..++... ...+++||..+++.+..+. +...+.+++|||||++|++++.|+.|+||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence              0          00001112222222222 3578999999998887775 44579999999999999999999999999


Q ss_pred             eCCCCCeeeeeeccCCccc
Q psy6442         193 QTNVGKTYGLWKCIEGGLN  211 (231)
Q Consensus       193 d~~~~~~~~~~~~~~~~~~  211 (231)
                      |+++++.....+.-.+..+
T Consensus       319 D~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             ETTTTEEEEEEECSSSCCB
T ss_pred             ECccCCEEEEEECCCCCcc
Confidence            9999999988886444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=6.7e-16  Score=128.73  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=136.1

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCce--EEEE
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEV--QKLE   79 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~--~~~~   79 (231)
                      +.||+|.|||..+++.++++..|. .++.+.|+|||+               +|++++.|+++++||+.+++..  ..+.
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~---------------~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGR---------------YLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSC---------------EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCC---------------EEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            579999999999999999999874 689999999854               5788999999999999887643  3444


Q ss_pred             eCCccee----EEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccc----------eeEEEEEEecCCCCEE-EEec
Q psy6442          80 FGAVPNS----LEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPA----------QVHSASLLLNSERPIF-VCGG  142 (231)
Q Consensus        80 ~~~~~~~----v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~g~  142 (231)
                      ....+..    ..++|||+.++++  .++.+.+||..+.+.+.......          ......+..++++..+ ++..
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            4333444    4557799987654  46899999999888776544211          1111223346666654 5667


Q ss_pred             CCCeEEEEeCCCcceeeecc-CCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCeeeee
Q psy6442         143 EDLKMYKFDYSTGAEIESFK-GHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       143 ~d~~i~~~d~~~~~~~~~~~-~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~~~~~  203 (231)
                      .+++|.+||..+.+.+.... .+...+..++|+|||+++++++ .++.+.+++..+++.....
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            78999999988766544322 3556788999999999776665 5667899999888876554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=6.8e-17  Score=129.47  Aligned_cols=148  Identities=11%  Similarity=0.069  Sum_probs=117.7

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cC--CeEEEEECCCcceEEeeeccceeEEEE
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG--SCVTFLDANSLELIKEHKVPAQVHSAS  128 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~  128 (231)
                      ++++++++ ++.|.+||+..+..++ +.+...+.+++|+||++.++.+ .+  ..+.+||..+.+..+.......+..+.
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~   92 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMG   92 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeee
Confidence            44466665 5799999998876554 4567789999999999987653 33  378999998877665555455565555


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEe----------eCCCcEEEEeCCCCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASG----------SEDGTLRLWQTNVGK  198 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~----------s~d~~v~iwd~~~~~  198 (231)
                      +  +|++..+++++.++.+++|+..+++....+..|...+.+++|+|||++|+.+          ..++.+++|+..+++
T Consensus        93 ~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3          93 V--DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             E--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             e--cccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence            4  8999999999999999999999999888888899999999999999999854          345679999999987


Q ss_pred             eeeee
Q psy6442         199 TYGLW  203 (231)
Q Consensus       199 ~~~~~  203 (231)
                      ....-
T Consensus       171 ~~~~~  175 (360)
T d1k32a3         171 IFAAT  175 (360)
T ss_dssp             EEECS
T ss_pred             eeeec
Confidence            66543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=4.9e-16  Score=128.93  Aligned_cols=215  Identities=10%  Similarity=-0.029  Sum_probs=140.5

Q ss_pred             CcCCCceeeeccCCCeEee-----eecccccEEEEEECCCCceeEecc-ccccc--------------------------
Q psy6442           2 CVDGKPMLRQGDTGDWIGT-----FEGHKGCVWGVDINKDASKAASGA-ADFQA--------------------------   49 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~-----l~gH~~~V~~~~~~~~~~~~~s~~-~d~~~--------------------------   49 (231)
                      +.||++++|+..+++....     ..+|.+.++++.|+|||++++.++ .+..+                          
T Consensus        80 ~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  159 (426)
T d1hzua2          80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  159 (426)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             eCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee
Confidence            5689999999999985443     348889999999999999876553 22110                          


Q ss_pred             -cCC-CEEEEEeCCCCEEEEeCCCC-----------Cc--eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCc
Q psy6442          50 -KNN-TRLISCAEDKTVRLWDVSAS-----------AE--VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSL  112 (231)
Q Consensus        50 -~~~-~~l~s~s~D~ti~iwd~~~~-----------~~--~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~  112 (231)
                       .++ ...+..+.|++..++.....           ..  +..+.....+..+.++|+++.++++.  ...+.+++..+.
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence             022 23456666666665544332           21  22344556778999999999877653  356667766554


Q ss_pred             ceEEeeecc---------------------------c--------------------------eeEEEEEEecCCCCEEE
Q psy6442         113 ELIKEHKVP---------------------------A--------------------------QVHSASLLLNSERPIFV  139 (231)
Q Consensus       113 ~~~~~~~~~---------------------------~--------------------------~~~~~~~~~~~~~~~~~  139 (231)
                      +........                           .                          ......+.++|+++.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence            443222100                           0                          00011123578888888


Q ss_pred             E-------ecCCCeEEEEeCCCcceeeec---------cCCCCCeeEEEEcCCCCEE-EEe----eCCCcEEEEeCCCCC
Q psy6442         140 C-------GGEDLKMYKFDYSTGAEIESF---------KGHFGPIHCVKFSPDGELY-ASG----SEDGTLRLWQTNVGK  198 (231)
Q Consensus       140 ~-------g~~d~~i~~~d~~~~~~~~~~---------~~h~~~V~~v~~spd~~~l-aS~----s~d~~v~iwd~~~~~  198 (231)
                      .       +..+.+|++||+.+++...++         ..|...|.+++|||||+++ +|+    +.++.|+|||..++|
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             EeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            4       456789999999888755443         3466779999999999855 443    468889999999998


Q ss_pred             eeeeeeccCCcccCCCCCCcccccc
Q psy6442         199 TYGLWKCIEGGLNNSLGLDSSGHLN  223 (231)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~  223 (231)
                      .++..++-.       .+.++||++
T Consensus       400 ~~~~i~~~~-------~~tp~Gk~~  417 (426)
T d1hzua2         400 LKAVVKDPR-------LITPTGKFN  417 (426)
T ss_dssp             EEEEECCTT-------CCSEEEEEE
T ss_pred             EEEEECCCC-------ccCCCceEe
Confidence            877666421       445788874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=6.4e-15  Score=118.04  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=78.4

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-   81 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-   81 (231)
                      .+++|++||..+|+.+.++..+...  .++|+|||+.++.+...     ...+..++.|+.|++||..+++.+..+... 
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~-----~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTV-----FSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEE-----EEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCC-----CccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            4567999999999999999876555  68999998876543211     112334567899999999999988777542 


Q ss_pred             -------CcceeEEEccCCCEEEEEc---CCeEEEEECCCcceEEe
Q psy6442          82 -------AVPNSLEISRDGTTITVTH---GSCVTFLDANSLELIKE  117 (231)
Q Consensus        82 -------~~~~~v~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~  117 (231)
                             ..+..++++|++..+++..   +..+.+|+..+.+.+..
T Consensus        99 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE
Confidence                   3456789999999876642   34677788776655443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=3e-14  Score=115.04  Aligned_cols=214  Identities=11%  Similarity=0.025  Sum_probs=140.6

Q ss_pred             CcCCCceeeeccCCCeEeeeecccccEEE-------EEECCCCceeEecccccc-------------------------c
Q psy6442           2 CVDGKPMLRQGDTGDWIGTFEGHKGCVWG-------VDINKDASKAASGAADFQ-------------------------A   49 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l~gH~~~V~~-------~~~~~~~~~~~s~~~d~~-------------------------~   49 (231)
                      ..++.|++||..+++.+..+..|......       +.|+++++.+.....+..                         .
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  173 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIH  173 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEe
Confidence            35788999999999999988877665533       567777765543321100                         0


Q ss_pred             cCC-CEEEEEeCCCCEEEEeCCCCCceEEEEeC-------CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeec-
Q psy6442          50 KNN-TRLISCAEDKTVRLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKV-  120 (231)
Q Consensus        50 ~~~-~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-  120 (231)
                      .++ ..+++.+.|+++.+|+...+.........       .....+.+.+++..+....++.+.+++............ 
T Consensus       174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  253 (373)
T d2madh_         174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeec
Confidence            133 45678999999999999887766554311       123345566666677667777888887665443222111 


Q ss_pred             ------------cceeEEEEE--------EecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC--
Q psy6442         121 ------------PAQVHSASL--------LLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--  178 (231)
Q Consensus       121 ------------~~~~~~~~~--------~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~--  178 (231)
                                  +.......+        .....+..++....+..+.+||..+++.+..+. +...+.+++|+|||+  
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPD  332 (373)
T ss_pred             cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEE
Confidence                        111111111        112223334555667889999999999888775 667789999999998  


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCC
Q psy6442         179 LYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLD  217 (231)
Q Consensus       179 ~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  217 (231)
                      ++++++.|++|+|||+.+++.......+ +..+..|++.
T Consensus       333 l~vt~~~d~~v~v~D~~tg~~~~~~~~~-g~~P~~l~~~  370 (373)
T d2madh_         333 LYALSAGTEVLHIYDAGAGDQDQSTVEL-GSGPQVLSVM  370 (373)
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEECCC-CCCCcEEEEe
Confidence            4578999999999999999998877653 3334444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.5e-14  Score=120.41  Aligned_cols=168  Identities=15%  Similarity=0.007  Sum_probs=128.6

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE-cCCeEEEEECCCcceE--EeeeccceeEEEE--
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANSLELI--KEHKVPAQVHSAS--  128 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~--  128 (231)
                      .+++.+.|++|.|||..+++++..+..+..+..++|+|||++++++ .++.+.+||..+.+..  .+.+.........  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            3689999999999999999999999988889999999999998865 5789999998776543  3333222222222  


Q ss_pred             EEecCCCCEE-EEecCCCeEEEEeCCCcceeeeccCC-----------CCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCC
Q psy6442         129 LLLNSERPIF-VCGGEDLKMYKFDYSTGAEIESFKGH-----------FGPIHCVKFSPDGEL-YASGSEDGTLRLWQTN  195 (231)
Q Consensus       129 ~~~~~~~~~~-~~g~~d~~i~~~d~~~~~~~~~~~~h-----------~~~V~~v~~spd~~~-laS~s~d~~v~iwd~~  195 (231)
                      ..++|+++.+ ++++.++.+++||..+++.+..+..|           ......+.++|++.. +++...++.|.+|+..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            2346788865 67888999999999999887766544           334567889999875 4677889999999999


Q ss_pred             CCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         196 VGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      +++....++--.+....-+.++++|.
T Consensus       194 ~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         194 DLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CCCcceEEEEcccCccccceECCCCC
Confidence            98877777654555566677777765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.60  E-value=1.6e-13  Score=106.92  Aligned_cols=148  Identities=18%  Similarity=0.250  Sum_probs=119.6

Q ss_pred             EEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeEEEEEEec
Q psy6442          55 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVHSASLLLN  132 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  132 (231)
                      .++.+.|++|.+||+.+++.+.++..+..+..++++||++.++++  .++.|.+||..+.+.++.+........+.+  .
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~--~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV--S   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE--C
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccc--c
Confidence            467788999999999999999999988889999999999988654  357999999999988888776655554444  6


Q ss_pred             CCCCE-EEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         133 SERPI-FVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       133 ~~~~~-~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +++.. ++++..+..+.+|+..+++....+..+ ..+.++.|+|+++.+ +++..++.+.+|+..+++.......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            67665 455667788999999988888777644 567889999999866 5666788999999999987766554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.9e-13  Score=106.94  Aligned_cols=93  Identities=8%  Similarity=0.018  Sum_probs=66.2

Q ss_pred             CcCCCceeeeccCCCeEeee--ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE--
Q psy6442           2 CVDGKPMLRQGDTGDWIGTF--EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK--   77 (231)
Q Consensus         2 ~~d~~~~~~~~~~g~~i~~l--~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~--   77 (231)
                      +.|++|++|+.+....+..+  ..|.+.|..+.|+|||++|              ++++..|++|++|++.......+  
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L--------------~v~~~~d~~i~~~~i~~~~~~~~~~   76 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYL--------------YVGVRPEFRVLAYRIAPDDGALTFA   76 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEE--------------EEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEE--------------EEEECCCCeEEEEEEeCCCCcEEEe
Confidence            57899999998655433333  3688999999999997653              35566689999999876544322  


Q ss_pred             --EEeCCcceeEEEccCCCEEEEEc--CCeEEEEE
Q psy6442          78 --LEFGAVPNSLEISRDGTTITVTH--GSCVTFLD  108 (231)
Q Consensus        78 --~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d  108 (231)
                        ......+..++++||++.++++.  +..+.+|+
T Consensus        77 ~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          77 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence              23455688899999999887653  34555553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=7.7e-13  Score=104.28  Aligned_cols=149  Identities=11%  Similarity=0.099  Sum_probs=115.8

Q ss_pred             EEEEEeCCCCEEEEeCCCCCceEEEEeC---CcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccceeE---
Q psy6442          54 RLISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQVH---  125 (231)
Q Consensus        54 ~l~s~s~D~ti~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~---  125 (231)
                      ++++++.|++|++||+.+++.+..+...   ..+..++++||++.++++  .++.+.+||..+.+.+.....+....   
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            6899999999999999999998888753   457899999999987654  46789999999988877765432111   


Q ss_pred             -EEEEEecCCCCEEEEec------------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q psy6442         126 -SASLLLNSERPIFVCGG------------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLW  192 (231)
Q Consensus       126 -~~~~~~~~~~~~~~~g~------------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iw  192 (231)
                       ...+.++|++..++.+.            .+..+.+||..+++.+..+.. ...+..++|+|||.++++++.  .+.+|
T Consensus        83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Cccee
Confidence             11234478888777654            356788999999888877764 456889999999999988864  47889


Q ss_pred             eCCCCCeeeeeec
Q psy6442         193 QTNVGKTYGLWKC  205 (231)
Q Consensus       193 d~~~~~~~~~~~~  205 (231)
                      |..+++....+..
T Consensus       160 d~~~~~~~~~~~~  172 (337)
T d1pbyb_         160 DPEAGTLVEDKPI  172 (337)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             eeecCcEEEEeec
Confidence            9999987766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.4e-13  Score=111.57  Aligned_cols=203  Identities=11%  Similarity=0.034  Sum_probs=134.6

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC--
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--   81 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~--   81 (231)
                      +.+++++|..+++.+.+..+|...  .+.|+|||+.++.+....     .++++++.|++|++||..+++.+..+..+  
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~-----~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSF-----ARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEE-----TTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             cceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccC-----ccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            345778899999999998887765  478999988766543211     11344567889999999999988887642  


Q ss_pred             ------CcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccce-------------------eE---------
Q psy6442          82 ------AVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPAQ-------------------VH---------  125 (231)
Q Consensus        82 ------~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~-------------------~~---------  125 (231)
                            ..+..++++||++.++++.  .+.+.+||..+.+..+....+..                   ..         
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCce
Confidence                  3456899999999887753  57888898776655443221100                   00         


Q ss_pred             -------------------------------------EEE-------------------------------EEecCCCCE
Q psy6442         126 -------------------------------------SAS-------------------------------LLLNSERPI  137 (231)
Q Consensus       126 -------------------------------------~~~-------------------------------~~~~~~~~~  137 (231)
                                                           ...                               +..++++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~  277 (368)
T d1mdah_         198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence                                                 000                               000011111


Q ss_pred             EEEe-cC--------CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCC--EEEEeeCCCcEEEEeCCCCCeeeeeecc
Q psy6442         138 FVCG-GE--------DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGE--LYASGSEDGTLRLWQTNVGKTYGLWKCI  206 (231)
Q Consensus       138 ~~~g-~~--------d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~--~laS~s~d~~v~iwd~~~~~~~~~~~~~  206 (231)
                      +... ..        ..+|++||..+++.+.++. +...+.+++|+|||+  ++++.+.|++|+|||..++|.....+. 
T Consensus       278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~-  355 (368)
T d1mdah_         278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL-  355 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC-
T ss_pred             EEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC-
Confidence            1110 00        1247789999888887776 345788999999996  467888899999999999998877653 


Q ss_pred             CCcccCCCCC
Q psy6442         207 EGGLNNSLGL  216 (231)
Q Consensus       207 ~~~~~~~~~~  216 (231)
                       +..++.|++
T Consensus       356 -g~~P~~l~~  364 (368)
T d1mdah_         356 -DKGPESLSV  364 (368)
T ss_dssp             -CSCCCEEEC
T ss_pred             -CCCCCEEEE
Confidence             343444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.39  E-value=2.9e-11  Score=95.31  Aligned_cols=166  Identities=13%  Similarity=0.095  Sum_probs=118.5

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEE--cCCeEEEEECCCcceEEeeeccce---
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT--HGSCVTFLDANSLELIKEHKVPAQ---  123 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~---  123 (231)
                      ++++|++++.|++|.+||+.+++.+.++..  ...+..++++||++.++++  .++.+.+||..+.+.+........   
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~   86 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   86 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc
Confidence            356799999999999999999999888875  4468899999999988765  467999999999888766543211   


Q ss_pred             --eEEEEEEecCCCCEEEEec------------CCCeEEEEeCCCcceeeeccCCC--CCeeEEEEcCCCCEEEEeeCCC
Q psy6442         124 --VHSASLLLNSERPIFVCGG------------EDLKMYKFDYSTGAEIESFKGHF--GPIHCVKFSPDGELYASGSEDG  187 (231)
Q Consensus       124 --~~~~~~~~~~~~~~~~~g~------------~d~~i~~~d~~~~~~~~~~~~h~--~~V~~v~~spd~~~laS~s~d~  187 (231)
                        .....+.+++++..++.++            .+..+.+|+..+++....+..+.  ..+..+.+++++.+++++   +
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  163 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---P  163 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---S
T ss_pred             cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---C
Confidence              0111234578888776554            46778889988877665544332  346677888888877654   4


Q ss_pred             cEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         188 TLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      .+.+|++.+++....+..  ......+.+.++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  195 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALPL--RNWNRKGYSAPDVL  195 (346)
T ss_dssp             SEEEECTTTCCEEEEECS--TTCCCTTBCCCBCC
T ss_pred             cceEEEccCCCEEEEEec--CCCccceEEecccc
Confidence            599999999988766653  33334444444443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.29  E-value=7e-10  Score=88.77  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=128.4

Q ss_pred             cCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeC-
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-   81 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-   81 (231)
                      .+++|++||..+|+.+.++.+|...  .+.|+|||++++.+..     ....+..++.|++|.+||..+++.+..+... 
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~-----~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALAST-----SFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEee-----cCCcccccccceEEEEEECCCCcEEEEEecCC
Confidence            3567999999999999999877654  6899999998877653     2334566778899999999999887776543 


Q ss_pred             -------CcceeEEEccCCCEEEEE---cCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCC-EEEEecCCCeEEEE
Q psy6442          82 -------AVPNSLEISRDGTTITVT---HGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERP-IFVCGGEDLKMYKF  150 (231)
Q Consensus        82 -------~~~~~v~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~~~  150 (231)
                             ..+..+.++++++.+++.   .++.+.+|+....+.......+.   .  ..+++++. .+++.+.|+.+.+|
T Consensus       118 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         118 APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPT---C--YHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             cceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccce---e--EEEecCCCcEEEEEcCCCeEEEE
Confidence                   234567888998876543   24567778877665554443332   1  22345554 45678889999999


Q ss_pred             eCCCcceeeeccCC------CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCee
Q psy6442         151 DYSTGAEIESFKGH------FGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTY  200 (231)
Q Consensus       151 d~~~~~~~~~~~~h------~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~  200 (231)
                      +...+........+      ......+.+++++. ++..+.++.+.+|+...+...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  247 (373)
T d2madh_         193 DHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGAT  247 (373)
T ss_pred             EcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEE
Confidence            99887765544322      22234456666664 455677899999998877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.2e-10  Score=91.43  Aligned_cols=143  Identities=12%  Similarity=0.165  Sum_probs=101.6

Q ss_pred             EEEEeCCCCEEEEeCCCCCc---eEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceEE----eeeccceeE
Q psy6442          55 LISCAEDKTVRLWDVSASAE---VQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELIK----EHKVPAQVH  125 (231)
Q Consensus        55 l~s~s~D~ti~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~----~~~~~~~~~  125 (231)
                      +++++.|++|++|++.....   +..+.++..+..++++||++.|+++.  ++.|.+|++.......    .........
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            57888999999999875543   34556778899999999999987654  5789999876543221    222222233


Q ss_pred             EEEEEecCCCCEEEEecC-CCeEEEEeCCCccee--eeccCCCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCCe
Q psy6442         126 SASLLLNSERPIFVCGGE-DLKMYKFDYSTGAEI--ESFKGHFGPIHCVKFSPDGELYASGS-EDGTLRLWQTNVGKT  199 (231)
Q Consensus       126 ~~~~~~~~~~~~~~~g~~-d~~i~~~d~~~~~~~--~~~~~h~~~V~~v~~spd~~~laS~s-~d~~v~iwd~~~~~~  199 (231)
                      .  +.++|+++.+++++. +..+.+|+.......  .....+...++++.++|++++++.++ .+..|.+|+......
T Consensus        87 ~--l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          87 H--ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             E--EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             E--EEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            3  445899998877764 678888877654432  33445777889999999999877776 556689999876553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=2.8e-10  Score=90.34  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=88.6

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEE--EEe-----------CCcceeEEEccCCCEEEEEc-----------CCeEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQK--LEF-----------GAVPNSLEISRDGTTITVTH-----------GSCVTF  106 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~--~~~-----------~~~~~~v~~~~~~~~~~~~~-----------~~~i~~  106 (231)
                      ++..++.++.++++.+|++..++....  ...           ......+++++++..+++..           ...+.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            456788888999999999887654211  111           11234578899998876531           136889


Q ss_pred             EECCCcceEEeeeccceeEEEEEEecCCCC--EEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCC
Q psy6442         107 LDANSLELIKEHKVPAQVHSASLLLNSERP--IFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDG  177 (231)
Q Consensus       107 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~  177 (231)
                      ||..+.+.+........+..+.  ++|+++  +++++..++.|++||.++++.++++.++......+.+.++|
T Consensus       285 ~d~~t~~~~~~~~~~~~~~~~a--~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         285 LDAKTGERLAKFEMGHEIDSIN--VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EETTTCCEEEEEEEEEEECEEE--ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EeCCCCcEEEEecCCCCEEEEE--EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            9999888887766554444444  478876  56777889999999999999999998776666666665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.05  E-value=5.3e-09  Score=86.06  Aligned_cols=182  Identities=13%  Similarity=0.036  Sum_probs=115.6

Q ss_pred             CCcCCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccc--------------------------cccccCCCE
Q psy6442           1 MCVDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA--------------------------DFQAKNNTR   54 (231)
Q Consensus         1 ~~~d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~--------------------------d~~~~~~~~   54 (231)
                      ++.+|+|++|+..+++.+++..     |    |+|++... .+..                          +. ..++++
T Consensus        17 gg~sG~V~V~dlpS~r~l~~Ip-----V----fspd~~~g-~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~g-tpDGr~   85 (441)
T d1qnia2          17 GGHQGEVRVLGVPSMRELMRIP-----V----FNVDSATG-WGITNESKEILGGDQQYLNGDCHHPHISMTDG-RYDGKY   85 (441)
T ss_dssp             CBTTCCEEEEEETTTEEEEEEC-----S----SSBCTTTC-TTTSHHHHHHHCSSSCCSCCCBCCCEEEEETT-EEEEEE
T ss_pred             CCCCCcEEEEeCCCCcEEEEEE-----e----EcCCCCEE-EEECCccceEEecccccccCcccCCCcceecc-cCCCCE
Confidence            3578999999999999888753     1    45544321 1100                          00 124666


Q ss_pred             EE-EEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEE--cCC------------------eEEEEECCC
Q psy6442          55 LI-SCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT--HGS------------------CVTFLDANS  111 (231)
Q Consensus        55 l~-s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~--~~~------------------~i~~~d~~~  111 (231)
                      |+ +...+.+|.++|+.++++...+..  ...+..++++|+++.+++.  ...                  .+..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            64 445778999999999988877765  4678899999999865442  222                  224477777


Q ss_pred             cceEEeeeccceeEEEEEEecCCCCEEEEecCC-----------------------------------------CeEEEE
Q psy6442         112 LELIKEHKVPAQVHSASLLLNSERPIFVCGGED-----------------------------------------LKMYKF  150 (231)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----------------------------------------~~i~~~  150 (231)
                      .+.......+.....+.+  +++++.+.+.+.+                                         +.+.++
T Consensus       166 ~~v~~qI~v~~~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         166 MDVAWQVIVDGNLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             CSEEEEEEESSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ceeeEEEecCCCccceEE--CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            776665554443333333  6666665544322                                         233334


Q ss_pred             eCCCcceeeeccCCCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q psy6442         151 DYSTGAEIESFKGHFGPIHCVKFSPDGELY-ASGSEDGTLRLWQTNV  196 (231)
Q Consensus       151 d~~~~~~~~~~~~h~~~V~~v~~spd~~~l-aS~s~d~~v~iwd~~~  196 (231)
                      +......+..++..+. .+.+.++|||+++ +++..+++|.|||+.+
T Consensus       244 ~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         244 GRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            4444444555555444 5789999999965 6778999999999854

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=1.2e-09  Score=90.79  Aligned_cols=108  Identities=6%  Similarity=0.011  Sum_probs=78.7

Q ss_pred             cCCCceeeeccCCCeEeee-----ecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTF-----EGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l-----~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      .|+++.+|+..+|+....+     ..|...|.++.|+|||+.++.+.....      +.--+.++.+.|||+.+++....
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~------~~r~s~~~~~~l~d~~~~~~~~l  107 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK------QWRHSYTASYDIYDLNKRQLITE  107 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE------CSSSCEEEEEEEEETTTTEECCS
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc------eeeeccCceEEEEECCCCccccc
Confidence            4788999999999876544     456688999999999887665432110      11113467899999998875543


Q ss_pred             EEeCCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEE
Q psy6442          78 LEFGAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIK  116 (231)
Q Consensus        78 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  116 (231)
                      ...+..+..+.|+|||+.++...++.+.+++.......+
T Consensus       108 ~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1         108 ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             ccCCccccccccccCcceeeEeecccceEEECCCCceee
Confidence            345567889999999998887778888888877665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=1.2e-06  Score=71.85  Aligned_cols=191  Identities=10%  Similarity=0.032  Sum_probs=118.3

Q ss_pred             cCCCceeeeccCCCeEeeee-cccccEEEEEECCCCcee--Eecccccccc--CCCEEEEEeCCCCEEEEeCCCCCceEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKA--ASGAADFQAK--NNTRLISCAEDKTVRLWDVSASAEVQK   77 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~-gH~~~V~~~~~~~~~~~~--~s~~~d~~~~--~~~~l~s~s~D~ti~iwd~~~~~~~~~   77 (231)
                      .+++|.+++..+++....+. .+....+.+.|+|+++.+  +..+.+..+.  ++..+-.-.....+..+|..+.+....
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            35678899999998877665 466778999999998743  2222211110  000000000002356688888888888


Q ss_pred             EEeCCcceeEEEccCCCEEEEEcCC------------------------------------------eEEEEECCCcceE
Q psy6442          78 LEFGAVPNSLEISRDGTTITVTHGS------------------------------------------CVTFLDANSLELI  115 (231)
Q Consensus        78 ~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------------------~i~~~d~~~~~~~  115 (231)
                      +.....+..+.++|+++.++++..+                                          .+.+++......+
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            8888889999999999988765321                                          1122222222333


Q ss_pred             EeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCCccee--------eeccCCC---CCeeEEEEcCCCCEEEEe
Q psy6442         116 KEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYSTGAEI--------ESFKGHF---GPIHCVKFSPDGELYASG  183 (231)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~~~--------~~~~~h~---~~V~~v~~spd~~~laS~  183 (231)
                      +.+..+...+.+  ..+|+++.+ +++..+.++.+||+.+....        ..+.++.   -.....+|.++|+.+.|.
T Consensus       252 ~~IPvgksPhGv--~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         252 RYIPVPKNPHGL--NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EEECCBSSCCCE--EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE
T ss_pred             EEEeCCCCccCc--eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcc
Confidence            333333323333  348888865 56788899999998653210        1111111   113456899999999999


Q ss_pred             eCCCcEEEEeCC
Q psy6442         184 SEDGTLRLWQTN  195 (231)
Q Consensus       184 s~d~~v~iwd~~  195 (231)
                      ..|.+|..|++.
T Consensus       330 ~~ds~v~kw~~~  341 (441)
T d1qnia2         330 FIDSQVCKWNIA  341 (441)
T ss_dssp             TTTTEEEEEEHH
T ss_pred             cccceEEEeccc
Confidence            999999999973

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.61  E-value=2.5e-07  Score=76.37  Aligned_cols=117  Identities=9%  Similarity=0.010  Sum_probs=87.7

Q ss_pred             CcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeecc------ceeEEEEEEecCCCCEEEEecC---------CCe
Q psy6442          82 AVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVP------AQVHSASLLLNSERPIFVCGGE---------DLK  146 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~---------d~~  146 (231)
                      ....++.|.+++.+++ ..++.+.+||..+.+........      ..+..  ..++|+++.++.++.         ++.
T Consensus        17 ~~~~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~--~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          17 LKLYSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSIND--YSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCCCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCE--EEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccce--eEECCCCCEEEEEECCcceeeeccCce
Confidence            3445778999887665 45678899999887765443221      22333  445899998887743         467


Q ss_pred             EEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeee
Q psy6442         147 MYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLW  203 (231)
Q Consensus       147 i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~  203 (231)
                      +++||+.+++ +..+..|...+..+.|||||+++|... ++.+.+|+..+++..++.
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeee
Confidence            8999998876 566788999999999999999999864 678999999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=4.3e-06  Score=63.53  Aligned_cols=169  Identities=11%  Similarity=0.105  Sum_probs=98.6

Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEe-eeccceeEEEE
Q psy6442          51 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKE-HKVPAQVHSAS  128 (231)
Q Consensus        51 ~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~  128 (231)
                      ++..+++....+.+++++......+........+..+++.++++..+... ...+..++......... ...-.....  
T Consensus        67 ~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--  144 (260)
T d1rwia_          67 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG--  144 (260)
T ss_dssp             TCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCE--
T ss_pred             CCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcce--
Confidence            34445554444555555544443322222234678999999988665543 34566666544332211 111111222  


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC
Q psy6442         129 LLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG  208 (231)
Q Consensus       129 ~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~  208 (231)
                      +..++++.++++...+.+|..++...................|++.++|+++++....+.|..++...... .......-
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~  223 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGL  223 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSC
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCC
Confidence            33377888888888888999999765443332234455678999999999999998889888887654432 22222122


Q ss_pred             cccCCCCCCccccc
Q psy6442         209 GLNNSLGLDSSGHL  222 (231)
Q Consensus       209 ~~~~~~~~~~~~~~  222 (231)
                      ..+..|+++.+|++
T Consensus       224 ~~P~~i~~d~~g~l  237 (260)
T d1rwia_         224 NTPLAVAVDSDRTV  237 (260)
T ss_dssp             CCEEEEEECTTCCE
T ss_pred             CCeEEEEEeCCCCE
Confidence            34556777777643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.57  E-value=2.2e-07  Score=74.14  Aligned_cols=138  Identities=7%  Similarity=-0.074  Sum_probs=92.4

Q ss_pred             EEeCCCC--EEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc-----------CCeEEEEECCCcceEEeeeccce
Q psy6442          57 SCAEDKT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANSLELIKEHKVPAQ  123 (231)
Q Consensus        57 s~s~D~t--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~  123 (231)
                      ++..+++  +.+||..+++.+..+...... .++++||++.+++..           ++.|.+||..+.+.+.....+..
T Consensus        39 ~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          39 PAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             CTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eccCCCcceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            3455666  555699999888887765543 689999999887642           35699999999888777654321


Q ss_pred             e------EEEEEEecCCCCEEEEec-CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q psy6442         124 V------HSASLLLNSERPIFVCGG-EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNV  196 (231)
Q Consensus       124 ~------~~~~~~~~~~~~~~~~g~-~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~  196 (231)
                      .      ....+.++++++.++.++ .++.+.+||+.+++.+..+..+.....   +......+++.+.||.+.+|+...
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCS
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecC
Confidence            0      001233488998887765 568999999999988887765543321   112234566667777777777654


Q ss_pred             CC
Q psy6442         197 GK  198 (231)
Q Consensus       197 ~~  198 (231)
                      +.
T Consensus       195 ~~  196 (368)
T d1mdah_         195 AP  196 (368)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=4.6e-05  Score=57.25  Aligned_cols=191  Identities=14%  Similarity=0.007  Sum_probs=100.4

Q ss_pred             CceeeeccCCCeEeeeecccccEEEEEECCCCceeEecccccc-------c-c-----------CCCEEEEEeCCCCEEE
Q psy6442           6 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ-------A-K-----------NNTRLISCAEDKTVRL   66 (231)
Q Consensus         6 ~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~-------~-~-----------~~~~l~s~s~D~ti~i   66 (231)
                      ++++-|.+ |.....+..+.+.+.+-.|||||+.++-......       . .           .......-+.||.-.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777754 7776677777888999999999999985432110       0 0           0011112223332222


Q ss_pred             EeCC-CC------------CceEEEEeCCcceeEEEccCCCEEEEE-c-C--CeEEEEECCCcceEEeeeccceeEEEEE
Q psy6442          67 WDVS-AS------------AEVQKLEFGAVPNSLEISRDGTTITVT-H-G--SCVTFLDANSLELIKEHKVPAQVHSASL  129 (231)
Q Consensus        67 wd~~-~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~  129 (231)
                      +... .+            ................+++++..+... . .  ..+...+.................  ..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~--~~  176 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ--DA  176 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE--EE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccc--cc
Confidence            2111 11            111101111222334556666654432 1 2  245556655543333222222222  23


Q ss_pred             EecCCCCEEEEecCCC---eEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCeee
Q psy6442         130 LLNSERPIFVCGGEDL---KMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSE---DGTLRLWQTNVGKTYG  201 (231)
Q Consensus       130 ~~~~~~~~~~~g~~d~---~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~---d~~v~iwd~~~~~~~~  201 (231)
                      .+++++..++..+.+.   .+++.+...+.. .. ..+........|||||+.|+-.+.   ...|.++++..++...
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccc-eE-eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            3478888877654443   455666655443 22 234556677899999998875543   4568899998776554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.37  E-value=6e-05  Score=60.01  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CCEEEEEe-CCCCEEEEeCCCCCceEEE---Ee---CCcceeEEEccCCCEEEEEc--CCeEEEEECCCcceE--Ee---
Q psy6442          52 NTRLISCA-EDKTVRLWDVSASAEVQKL---EF---GAVPNSLEISRDGTTITVTH--GSCVTFLDANSLELI--KE---  117 (231)
Q Consensus        52 ~~~l~s~s-~D~ti~iwd~~~~~~~~~~---~~---~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~--~~---  117 (231)
                      ++++++++ ....|.+|+......+...   ..   +..+..++++|+++.+++..  ++.+..|+.......  ..   
T Consensus       156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~  235 (365)
T d1jofa_         156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeee
Confidence            34444443 3456777775543322221   11   35688999999999887764  578888886554321  11   


Q ss_pred             eec-------------cceeEEEEEEecCCCCEEEEecC------CCeEEEEeCCCc-cee-----eeccCCCCCeeEEE
Q psy6442         118 HKV-------------PAQVHSASLLLNSERPIFVCGGE------DLKMYKFDYSTG-AEI-----ESFKGHFGPIHCVK  172 (231)
Q Consensus       118 ~~~-------------~~~~~~~~~~~~~~~~~~~~g~~------d~~i~~~d~~~~-~~~-----~~~~~h~~~V~~v~  172 (231)
                      ...             ........+..+|++++++++..      ...|..|+.... ...     ..........+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~  315 (365)
T d1jofa_         236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred             eccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEE
Confidence            110             01122334456899998876532      234666665432 211     11122334567899


Q ss_pred             EcC-CCCEEEEe-eCCCcEEEEeCCCC
Q psy6442         173 FSP-DGELYASG-SEDGTLRLWQTNVG  197 (231)
Q Consensus       173 ~sp-d~~~laS~-s~d~~v~iwd~~~~  197 (231)
                      ++| +|++|+.+ ..+++|.||++...
T Consensus       316 ~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         316 PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            998 78866544 67899999987543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.28  E-value=0.00042  Score=53.81  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=73.6

Q ss_pred             CcceeEEEccCCC----EEEEE--cCCeEEEEECCCcceEEe----eecc--ceeEEEEEEecCCCCEEEEecCCCeEEE
Q psy6442          82 AVPNSLEISRDGT----TITVT--HGSCVTFLDANSLELIKE----HKVP--AQVHSASLLLNSERPIFVCGGEDLKMYK  149 (231)
Q Consensus        82 ~~~~~v~~~~~~~----~~~~~--~~~~i~~~d~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~~  149 (231)
                      ..++.++++|++.    .++++  ..+.|..++......+..    ...+  .....-.+..+.++.+.++....+.|+.
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            3457788888764    45554  346777776543322211    1111  1111112334788888887777899999


Q ss_pred             EeCCCcceeeeccCCCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeC
Q psy6442         150 FDYSTGAEIESFKGHFGPIHCVKFSPDGE-LYASGSEDGTLRLWQT  194 (231)
Q Consensus       150 ~d~~~~~~~~~~~~h~~~V~~v~~spd~~-~laS~s~d~~v~iwd~  194 (231)
                      ||.+.+..+..+......+.+++|.||++ ++++.+.++.|.-.++
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            99887776666665566789999999986 6788888887877775

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.27  E-value=0.00044  Score=53.71  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             CcceeEEEccCCCEEEEEc--CCeEEEEECCCcc-eEEe------eeccceeEEEEEEecCCCCEEEEecCCCeEEEEeC
Q psy6442          82 AVPNSLEISRDGTTITVTH--GSCVTFLDANSLE-LIKE------HKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDY  152 (231)
Q Consensus        82 ~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~  152 (231)
                      ..++.++++|+++.++++.  .+.|..++..... ....      .........-.+..+.++.+.++....++|.+|+.
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            4578899999999887764  4688888764321 1111      11111111122334788888888888899999995


Q ss_pred             CCcceeeecc------CCCCCeeEEEEcCCCCEEEEee
Q psy6442         153 STGAEIESFK------GHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       153 ~~~~~~~~~~------~h~~~V~~v~~spd~~~laS~s  184 (231)
                       .++.+.++.      ++...+++++|.|+...+...+
T Consensus       257 -~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         257 -RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence             677766543      4455688999999877665554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.25  E-value=0.00042  Score=52.64  Aligned_cols=143  Identities=13%  Similarity=0.230  Sum_probs=86.9

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeC---CcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEEE
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHSA  127 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~  127 (231)
                      ..+++....+.+.+++.. ++.+..+...   ..+..+++.+++..+++.. .+.|.+++... +.+..+..+. -....
T Consensus       126 ~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~  203 (279)
T d1q7fa_         126 RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPI  203 (279)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEE
T ss_pred             cEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceeeeecccccccCCc
Confidence            334443444445555533 3444444322   3467788888887655443 46888888654 3444443221 11122


Q ss_pred             EEEecCCCCEEEEec-CCCeEEEEeCCCcceeeeccC--CCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCe
Q psy6442         128 SLLLNSERPIFVCGG-EDLKMYKFDYSTGAEIESFKG--HFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       128 ~~~~~~~~~~~~~g~-~d~~i~~~d~~~~~~~~~~~~--h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~  199 (231)
                      .+..++++.++++-. .+.+|.+|+. +++.+.++..  .....+.|++.|||++++ ++.++.|++|......+
T Consensus       204 giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         204 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             ccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            334488888777654 3457999984 6776666532  234678999999998666 45789999999887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.6e-05  Score=64.30  Aligned_cols=202  Identities=9%  Similarity=-0.031  Sum_probs=116.5

Q ss_pred             cCCCceeeeccCCCeEeeeec---ccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEE
Q psy6442           3 VDGKPMLRQGDTGDWIGTFEG---HKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLE   79 (231)
Q Consensus         3 ~d~~~~~~~~~~g~~i~~l~g---H~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~   79 (231)
                      .||.+++++..+++....+..   ..-.+....|+||++.++-...      ...+.--+..+.+.++|+.++.......
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~------~~~~~r~s~~~~~~i~d~~~~~~~~l~~  108 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN------VEPIYQHSYTGYYVLSKIPHGDPQSLDP  108 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES------CCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEc------ccceeEeeccccEEEEEccCCceeeccC
Confidence            478899999988875332322   2235667789999876543211      0001001345678899998876543221


Q ss_pred             e---CCcceeEEEccCCCEEEEEcCCeEEEEECCCcceEEeeeccc--ee---------------EEEEEEecCCCCEEE
Q psy6442          80 F---GAVPNSLEISRDGTTITVTHGSCVTFLDANSLELIKEHKVPA--QV---------------HSASLLLNSERPIFV  139 (231)
Q Consensus        80 ~---~~~~~~v~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~  139 (231)
                      .   ...+....|+|||+.++...++.+.+.+.......+......  .+               ....+.++|+++.++
T Consensus       109 ~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         109 PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             ccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            1   123345789999998876677778887766555443322110  00               012344688998877


Q ss_pred             EecCC----------------------------------CeEEEEeCCCcceee-e-----ccCCCCCeeEEEEcCCCCE
Q psy6442         140 CGGED----------------------------------LKMYKFDYSTGAEIE-S-----FKGHFGPIHCVKFSPDGEL  179 (231)
Q Consensus       140 ~g~~d----------------------------------~~i~~~d~~~~~~~~-~-----~~~h~~~V~~v~~spd~~~  179 (231)
                      ....|                                  .+++++|+..+.... .     ......-+..+.|+|++++
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~  268 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE
Confidence            54211                                  134455554332111 1     1111223677899999986


Q ss_pred             EEEee-CCC---cEEEEeCCCCCeeeeeeccCCcc
Q psy6442         180 YASGS-EDG---TLRLWQTNVGKTYGLWKCIEGGL  210 (231)
Q Consensus       180 laS~s-~d~---~v~iwd~~~~~~~~~~~~~~~~~  210 (231)
                      ++... ++.   .|.++|..+|+...++++..+++
T Consensus       269 ~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w  303 (465)
T d1xfda1         269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW  303 (465)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             EEEEEccccccceEEEEcCCCCcEEEEEEEcCCce
Confidence            65542 332   47889999999887777655554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=0.00067  Score=51.47  Aligned_cols=159  Identities=14%  Similarity=0.250  Sum_probs=99.2

Q ss_pred             eCCCCEEEEeCCCCCceEEEEe--CCcceeEEEccCCCEEEEEc-CCeEEEEECCCcceEEeeeccc-eeEEEEEEecCC
Q psy6442          59 AEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVTH-GSCVTFLDANSLELIKEHKVPA-QVHSASLLLNSE  134 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~  134 (231)
                      +..+.|..++. .++....+..  ...+..+++.+++..+++.. ...+.+++... ..+..+.... ......+...++
T Consensus        90 ~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          90 SPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             GGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSS
T ss_pred             CCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccc
Confidence            34456666664 3444444432  24567889999988766654 35677776543 3444433221 111122334777


Q ss_pred             CCEEEEecCCCeEEEEeCCCcceeeec--cCCCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCeeeeeecc-CCcc
Q psy6442         135 RPIFVCGGEDLKMYKFDYSTGAEIESF--KGHFGPIHCVKFSPDGELYASGSE-DGTLRLWQTNVGKTYGLWKCI-EGGL  210 (231)
Q Consensus       135 ~~~~~~g~~d~~i~~~d~~~~~~~~~~--~~h~~~V~~v~~spd~~~laS~s~-d~~v~iwd~~~~~~~~~~~~~-~~~~  210 (231)
                      +.++++.....+|++||. .++.+.++  .++......|++.|+|+++++-.. ++.|.+|+. +|+....|..- ....
T Consensus       168 g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ  245 (279)
T ss_dssp             SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred             eeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCC
Confidence            888888888889999986 45656555  345566889999999998887554 456999984 67776666432 2334


Q ss_pred             cCCCCCCcccc
Q psy6442         211 NNSLGLDSSGH  221 (231)
Q Consensus       211 ~~~~~~~~~~~  221 (231)
                      +..|+++++|+
T Consensus       246 p~~vav~~dG~  256 (279)
T d1q7fa_         246 CFDVALMDDGS  256 (279)
T ss_dssp             EEEEEEETTTE
T ss_pred             EeEEEEeCCCc
Confidence            55666777664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.03  E-value=0.00097  Score=51.10  Aligned_cols=188  Identities=11%  Similarity=0.076  Sum_probs=109.9

Q ss_pred             CCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEeCCcceeEEEccCCC
Q psy6442          15 GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT   94 (231)
Q Consensus        15 g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~   94 (231)
                      .+.+.++.... .+..+++.|+|+               .+++...+++|..||.. ++..........+..+++.+++.
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~---------------l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~   80 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGT---------------IFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD   80 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSC---------------EEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC
T ss_pred             ccEEEECCCCC-CcCCEEECCCCC---------------EEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC
Confidence            45566665322 577888998865               46677778888888754 34444455677899999999999


Q ss_pred             EEEEEc-CCeEEEEECCC--cceEEeeeccc--eeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee---------
Q psy6442          95 TITVTH-GSCVTFLDANS--LELIKEHKVPA--QVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES---------  160 (231)
Q Consensus        95 ~~~~~~-~~~i~~~d~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~---------  160 (231)
                      .+++.. ++.+..++...  .........+.  ....  +...+++.++++...++.++.++...+.....         
T Consensus        81 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          81 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNG--ITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEE--EEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             eEEEecCCceEEEEEecccccceeeccccCCccccce--eEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            766653 45555554322  22222222221  2233  33478888888888888999998876542111         


Q ss_pred             -ccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee-eeccCCcccCCCCCCccccc
Q psy6442         161 -FKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL-WKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       161 -~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  222 (231)
                       .......+..++++.+ .++.+.+..+.|.-++......... .........-.++++.+|..
T Consensus       159 ~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l  221 (302)
T d2p4oa1         159 NSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL  221 (302)
T ss_dssp             STTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE
T ss_pred             eccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCE
Confidence             1111233456666543 4666777888888887655433211 11112333445666666654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.96  E-value=0.00076  Score=51.73  Aligned_cols=178  Identities=11%  Similarity=0.083  Sum_probs=98.9

Q ss_pred             cccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCc-eEEE-Ee--CCcceeEEEccCCCEEEE
Q psy6442          23 GHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAE-VQKL-EF--GAVPNSLEISRDGTTITV   98 (231)
Q Consensus        23 gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~-~~~~-~~--~~~~~~v~~~~~~~~~~~   98 (231)
                      ...+.+.+++|.++|               ..+++...++.+..++...... ...+ ..  ...++.+.+.++++.++.
T Consensus        65 ~~~~~~~gla~~~dG---------------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~  129 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNG---------------DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTA  129 (302)
T ss_dssp             ECSSEEEEEEECTTS---------------CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEE
T ss_pred             cCCCCcceEEEcCCC---------------CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEee
Confidence            344556666666654               4466666777777776543322 2222 22  245788999999876554


Q ss_pred             Ec-CCeEEEEECCCcceEEeeec---------cceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeee--ccCCCC
Q psy6442          99 TH-GSCVTFLDANSLELIKEHKV---------PAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIES--FKGHFG  166 (231)
Q Consensus        99 ~~-~~~i~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~--~~~h~~  166 (231)
                      .. .+.+..++............         ........+... ...+..+....++|+.++.........  ...+..
T Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  208 (302)
T d2p4oa1         130 DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT  208 (302)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred             ccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-CCceeeecCCCCeEEeccccccccccccccccCCC
Confidence            33 45666677655432111100         000111112223 234556667788999988765332211  111234


Q ss_pred             CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCC-cccCCCCCC
Q psy6442         167 PIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEG-GLNNSLGLD  217 (231)
Q Consensus       167 ~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~  217 (231)
                      ....+++.++|+++++...++.|..++.. |+.....+...+ ..++.++|+
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             CCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEc
Confidence            46789999999999998889999999875 443333332222 123445553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.96  E-value=0.0013  Score=49.05  Aligned_cols=83  Identities=11%  Similarity=0.045  Sum_probs=49.1

Q ss_pred             CCCceeeeccCCCeEeeeecccccEEEEEECCCCceeEeccccccccCCCEEEEEeCCC--CEEEEeCCCCCceEEEEe-
Q psy6442           4 DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKNNTRLISCAEDK--TVRLWDVSASAEVQKLEF-   80 (231)
Q Consensus         4 d~~~~~~~~~~g~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~--ti~iwd~~~~~~~~~~~~-   80 (231)
                      +|.|++.+..+|+.. .|..+.+.+....|+|||+.++-....           .+.+.  .|.+.+...++..+.... 
T Consensus        20 ~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~-----------~~~~~~~~i~~~~~~~g~~~~lt~~~   87 (281)
T d1k32a2          20 CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMR-----------GSSLNTADLYFYNGENGEIKRITYFS   87 (281)
T ss_dssp             TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEE-----------STTCCEEEEEEEETTTTEEEECCCCC
T ss_pred             CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEee-----------CCCCCceEEEEEEecCCceEEeeecC
Confidence            466777788877654 577788889999999998876532210           01111  245556555543322111 


Q ss_pred             ------CCcceeEEEccCCCEEEE
Q psy6442          81 ------GAVPNSLEISRDGTTITV   98 (231)
Q Consensus        81 ------~~~~~~v~~~~~~~~~~~   98 (231)
                            ........|+|+++.++.
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEE
T ss_pred             CCccCccccccccccCCCCCEEEE
Confidence                  123456678888887664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=0.0011  Score=49.62  Aligned_cols=189  Identities=12%  Similarity=0.145  Sum_probs=103.4

Q ss_pred             CeEeeeecccccE--EEEEECCCCceeEeccccccccCCCEEEEEeCCCCEEEEeCCCCCceEEEEe--CCcceeEEEcc
Q psy6442          16 DWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISR   91 (231)
Q Consensus        16 ~~i~~l~gH~~~V--~~~~~~~~~~~~~s~~~d~~~~~~~~l~s~s~D~ti~iwd~~~~~~~~~~~~--~~~~~~v~~~~   91 (231)
                      +.+-.+.|+...+  ..+++.++|+..              ++..+..+.+..++....... ....  ...+..+++.+
T Consensus         2 ~~~~~~~~~~~~~~P~~vavd~dG~i~--------------v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~   66 (260)
T d1rwia_           2 QTVLPFTGIDFRLSPSGVAVDSAGNVY--------------VTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDG   66 (260)
T ss_dssp             EEECCCCSCCSCCCEEEEEECTTCCEE--------------EEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECT
T ss_pred             CeEEecccCCCcCCCCEEEEcCCCCEE--------------EEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcC
Confidence            3444455554333  577787775432              223334455555554433211 1112  23578899999


Q ss_pred             CCCEEEEEcCC-eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeE
Q psy6442          92 DGTTITVTHGS-CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHC  170 (231)
Q Consensus        92 ~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~  170 (231)
                      ++...++...+ .+.+++..+...............  +..++++.+.++-.....+..++............-......
T Consensus        67 ~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~--iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  144 (260)
T d1rwia_          67 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEG--LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  144 (260)
T ss_dssp             TCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEE--EEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCE
T ss_pred             CCCEEEeeeeeceeeeeeeccceeeeeeeeeeeccc--ccccccceeEeeccccccccccccccceeeeeeecccCCcce
Confidence            99866554444 444444443333322221122233  334777777777666677777776543322211122345678


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccccc
Q psy6442         171 VKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGHL  222 (231)
Q Consensus       171 v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (231)
                      ++++|+++++++...++.|..++....... .+....-..+..|+++++|.+
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l  195 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTV  195 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCE
T ss_pred             eeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeee
Confidence            999999999998888899999997654432 232223344566677766643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.63  E-value=0.0069  Score=47.56  Aligned_cols=141  Identities=6%  Similarity=-0.005  Sum_probs=79.2

Q ss_pred             cceeEEEccCCCEEEEEcC--CeEEEEECCCcceE---Eeeec-cceeEEEEEEecCCCCEEEEe-cCCCeEEEEeCCCc
Q psy6442          83 VPNSLEISRDGTTITVTHG--SCVTFLDANSLELI---KEHKV-PAQVHSASLLLNSERPIFVCG-GEDLKMYKFDYSTG  155 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~--~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~~d~~~~  155 (231)
                      .+-.+.++|+++.+++...  +.+.+++......+   ..... ........+.++|+++.+... ..+.+|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4678999999998887653  57777764432221   11111 111222234458888876544 45678888887554


Q ss_pred             ce--eee---cc--------------CCCCCeeEEEEcCCCCEEEEeeC-CC-----cEEEEeCCCCCeee-e--e--ec
Q psy6442         156 AE--IES---FK--------------GHFGPIHCVKFSPDGELYASGSE-DG-----TLRLWQTNVGKTYG-L--W--KC  205 (231)
Q Consensus       156 ~~--~~~---~~--------------~h~~~V~~v~~spd~~~laS~s~-d~-----~v~iwd~~~~~~~~-~--~--~~  205 (231)
                      ..  +..   ..              .+......+.++|||++|.++.+ +.     .|.+|++....... .  .  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            32  111   10              11223557899999998766642 22     37777765432221 1  1  12


Q ss_pred             cCCcccCCCCCCc-ccccc
Q psy6442         206 IEGGLNNSLGLDS-SGHLN  223 (231)
Q Consensus       206 ~~~~~~~~~~~~~-~~~~~  223 (231)
                      ..++.+..+++.+ +|+.+
T Consensus       306 ~~G~~p~~i~~~p~~G~~l  324 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEE
T ss_pred             cCCCCccEEEecCCCCCEE
Confidence            2456677777775 66643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.0092  Score=45.84  Aligned_cols=168  Identities=11%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             CCEEEEEeCCCCEEEEeCCCCCceEEEE-eC----CcceeEEEccCCCEEEEEcC----------------CeEEEEECC
Q psy6442          52 NTRLISCAEDKTVRLWDVSASAEVQKLE-FG----AVPNSLEISRDGTTITVTHG----------------SCVTFLDAN  110 (231)
Q Consensus        52 ~~~l~s~s~D~ti~iwd~~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~~~----------------~~i~~~d~~  110 (231)
                      +..|+.+.....+...|...+....... ..    ..++.+++.++|...+....                +.+..++..
T Consensus        82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d  161 (314)
T d1pjxa_          82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec
Confidence            4556667666667777765432211101 11    13678999999976554211                123333332


Q ss_pred             CcceEEeeeccceeEEEEEEecCCC---CEEEEecCCCeEEEEeCCCccee------eeccC-CCCCeeEEEEcCCCCEE
Q psy6442         111 SLELIKEHKVPAQVHSASLLLNSER---PIFVCGGEDLKMYKFDYSTGAEI------ESFKG-HFGPIHCVKFSPDGELY  180 (231)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~~~d~~~~~~~------~~~~~-h~~~V~~v~~spd~~~l  180 (231)
                      . +.......-...+.+.+....++   .+.++-...++|+.||+.....+      ..+.+ +......+++.++|+++
T Consensus       162 g-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnly  240 (314)
T d1pjxa_         162 G-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             S-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             C-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEE
Confidence            1 22111111111223344333332   24555567788999887533222      22222 22345679999999999


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCcccc
Q psy6442         181 ASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSGH  221 (231)
Q Consensus       181 aS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      ++....+.|.+||...++....... ....++.++|.++++
T Consensus       241 Va~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         241 VANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSS
T ss_pred             EEEcCCCEEEEEeCCCCEEEEEEEC-CCCCEEEEEEeCCCC
Confidence            9888889999999988876655543 334455666766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.021  Score=41.91  Aligned_cols=156  Identities=10%  Similarity=0.070  Sum_probs=87.8

Q ss_pred             CeEeeeecccccEEEEEECCCCceeEeccccc------------------------------cccCCCEEEEEeCCCCEE
Q psy6442          16 DWIGTFEGHKGCVWGVDINKDASKAASGAADF------------------------------QAKNNTRLISCAEDKTVR   65 (231)
Q Consensus        16 ~~i~~l~gH~~~V~~~~~~~~~~~~~s~~~d~------------------------------~~~~~~~l~s~s~D~ti~   65 (231)
                      .....+..+.+......|+|+|+.++......                              .......+++...++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          73 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCce
Confidence            33445566778888999999998877543210                              000222344444455444


Q ss_pred             EE--eCCCCCceEEEEeCCcceeEEEccCCCEEEEE-c-CC--eEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEE
Q psy6442          66 LW--DVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-GS--CVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFV  139 (231)
Q Consensus        66 iw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (231)
                      ||  ++..+................++|++..++.. . .+  .+.+.+....... ..........  ..++|+|+.++
T Consensus       153 i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~--p~~SPDG~~i~  229 (269)
T d2hqsa1         153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDET--PSLAPNGTMVI  229 (269)
T ss_dssp             EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEE--EEECTTSSEEE
T ss_pred             EeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccc--eEECCCCCEEE
Confidence            43  44443332222223445667899999977653 2 23  4445555444332 2222222222  23589999877


Q ss_pred             EecC---CCeEEEEeCCCcceeeeccCCCCCeeEEEEcC
Q psy6442         140 CGGE---DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSP  175 (231)
Q Consensus       140 ~g~~---d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~sp  175 (231)
                      ..+.   ...|+++++..+. ...+....+.+...+|||
T Consensus       230 f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         230 YSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             EEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            5443   3568899987655 445555667788889998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0024  Score=52.20  Aligned_cols=123  Identities=18%  Similarity=0.134  Sum_probs=77.6

Q ss_pred             eCCCCEEEEeCCCCCceEEEEeC----CcceeEEEccCCCEEEEEc----------CCeEEEEECCCcceEEeeecc---
Q psy6442          59 AEDKTVRLWDVSASAEVQKLEFG----AVPNSLEISRDGTTITVTH----------GSCVTFLDANSLELIKEHKVP---  121 (231)
Q Consensus        59 s~D~ti~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~---  121 (231)
                      ..||.|.+||+.+++....+...    ..+....++||++.++...          .+.+.++|+.+..........   
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            45788999999888765444322    2466788999999876643          246777888766543322211   


Q ss_pred             ceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeec-cCCCCCe-----------------eEEEEcCCCCEEEEe
Q psy6442         122 AQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESF-KGHFGPI-----------------HCVKFSPDGELYASG  183 (231)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~-~~h~~~V-----------------~~v~~spd~~~laS~  183 (231)
                      ..+..  ..++|++..+|... +..|++.+...+..++.. .+-.+.|                 ..+.|||||++||..
T Consensus       114 ~~l~~--~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         114 AKLQY--AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCCSB--CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cccce--eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            11111  23488998888764 667888887665544332 2221211                 467899999999887


Q ss_pred             e
Q psy6442         184 S  184 (231)
Q Consensus       184 s  184 (231)
                      .
T Consensus       191 ~  191 (465)
T d1xfda1         191 A  191 (465)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.50  E-value=0.059  Score=44.84  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCcccCCCCCCccc
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGGLNNSLGLDSSG  220 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                      .+.+.-+|+.+++.+.+.. +..+..+-.++-.+.++..++.|+.++-+|.++|++....+.=.+..+.-+....+|
T Consensus       443 ~G~l~AiD~~TG~~~W~~~-~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dG  518 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cccEEEeccCCCceeeEcC-CCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECC
Confidence            3678899999998876543 122222212233455777799999999999999998766554334433333333343

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.44  E-value=0.032  Score=40.90  Aligned_cols=95  Identities=16%  Similarity=0.066  Sum_probs=60.7

Q ss_pred             EEccC--CCEEEEEcCCeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEec----CC--CeEEEEeCCCcceee
Q psy6442          88 EISRD--GTTITVTHGSCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGG----ED--LKMYKFDYSTGAEIE  159 (231)
Q Consensus        88 ~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d--~~i~~~d~~~~~~~~  159 (231)
                      ..+||  |..++....+.|.++|+...+..+....+.....  ..++|+++.++...    .+  ..|++++...++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~--p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINN--ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEE--EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccC--EEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45677  8887766667788889887776554444443333  34489999887542    22  247888877766433


Q ss_pred             ecc------CCCCCeeEEEEcCCCCEEEEee
Q psy6442         160 SFK------GHFGPIHCVKFSPDGELYASGS  184 (231)
Q Consensus       160 ~~~------~h~~~V~~v~~spd~~~laS~s  184 (231)
                      ...      .........+|+|||+.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            211      1223456789999999887653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.35  E-value=0.13  Score=38.70  Aligned_cols=149  Identities=11%  Similarity=0.121  Sum_probs=89.6

Q ss_pred             CEEEEEeCCCCEEEEeCCCCCceEEEEeC-----CcceeEEEccCCCEEEEEc-----CCeEEEEECCCcceEEeeeccc
Q psy6442          53 TRLISCAEDKTVRLWDVSASAEVQKLEFG-----AVPNSLEISRDGTTITVTH-----GSCVTFLDANSLELIKEHKVPA  122 (231)
Q Consensus        53 ~~l~s~s~D~ti~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~  122 (231)
                      ..|+.++.+ .+.++|..+++........     ..++++.+.|+|...+...     .+.-.++.....+.........
T Consensus        70 g~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~  148 (295)
T d2ghsa1          70 SKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS  148 (295)
T ss_dssp             TEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES
T ss_pred             CCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC
Confidence            344445554 5888999888754433321     2467889999998766532     1223344433333322221111


Q ss_pred             eeEEEEEEecCCCCEE-EEecCCCeEEEEeCCC--cc------eeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy6442         123 QVHSASLLLNSERPIF-VCGGEDLKMYKFDYST--GA------EIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQ  193 (231)
Q Consensus       123 ~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~--~~------~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd  193 (231)
                      ..+..  .+++++..+ ++.+..+.|+.+++..  +.      ....+.+-.+....+++.++|++.++.-..+.|..||
T Consensus       149 ~~Ng~--~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         149 IPNSI--CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             SEEEE--EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             Cccee--eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            12222  336777644 5556678898887632  11      1122334455678899999999988877788899999


Q ss_pred             CCCCCeeeeeec
Q psy6442         194 TNVGKTYGLWKC  205 (231)
Q Consensus       194 ~~~~~~~~~~~~  205 (231)
                      . .|+....++.
T Consensus       227 p-~G~~~~~i~l  237 (295)
T d2ghsa1         227 T-DGNHIARYEV  237 (295)
T ss_dssp             T-TCCEEEEEEC
T ss_pred             C-CCcEeeEecC
Confidence            6 6888777764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.10  E-value=0.023  Score=47.26  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=43.1

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .+.+.-+|+.+++.+.+++ +..+..+-.++-.+.++..++.||.++-+|..+|++....+.
T Consensus       437 ~G~l~A~D~~tGk~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            3678889999998876654 222333223344566777899999999999999998766554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.04  E-value=0.083  Score=44.15  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeeccCCc
Q psy6442         145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKCIEGG  209 (231)
Q Consensus       145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~~~~~  209 (231)
                      +.+.-||..+++.+.... +..++.+-.++-.+.++..++.|+.++-+|.++|++....+.-.+.
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~  516 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence            678889999998775543 2333333334445677778999999999999999977655543333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.85  E-value=0.078  Score=44.03  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             CeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         145 LKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       145 ~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      +++.-+|+.+++.+.+++. ..+...=..+-.+.++..++.|+.++.+|.++|++....+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~-~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecC-CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            5688899999988876642 22333223344677888899999999999999997655544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.49  E-value=0.34  Score=36.60  Aligned_cols=119  Identities=9%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             cceeEEEccCCCEEEEEcC-------CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEE-EEecCCCeEEEEeCCC
Q psy6442          83 VPNSLEISRDGTTITVTHG-------SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIF-VCGGEDLKMYKFDYST  154 (231)
Q Consensus        83 ~~~~v~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~~~d~~~  154 (231)
                      .++.+.+.++|...+....       +.+..++............-...+.  +.+++++..+ ++-...++|+.|++..
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnG--ia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG--IALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE--EEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeee--eeeccccceEEEecccCCceEEEEEcC
Confidence            4678999999986544321       2344454433222111111111222  3347888754 5556678999998753


Q ss_pred             c-ceee-------eccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeee
Q psy6442         155 G-AEIE-------SFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWK  204 (231)
Q Consensus       155 ~-~~~~-------~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~  204 (231)
                      . ....       ...........+++.++|+++++....+.|.+|+. .|+....+.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            2 1111       11111223567999999999999999999999996 688777765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.084  Score=43.94  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             CCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeeeeec
Q psy6442         144 DLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGLWKC  205 (231)
Q Consensus       144 d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~~~~  205 (231)
                      .+.+.-+|+.+++.+.+++.+ .++.+-..+..+.++.+++.|+.++-+|.++|++....+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            467888999999988776533 3444333455677777899999999999999997766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.29  E-value=0.38  Score=35.95  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             EEEEeCCCCCceEEEEeCCcceeEEEccCCCEEEEEc--CCeEEEEECCCcc--e---EEe-eec---cceeEEEEEEec
Q psy6442          64 VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDANSLE--L---IKE-HKV---PAQVHSASLLLN  132 (231)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~--~---~~~-~~~---~~~~~~~~~~~~  132 (231)
                      -.+|.+..++......--..++.+++++++..+++..  .+.|..++.....  .   ... ...   ......  +..+
T Consensus       130 g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG--~~vD  207 (295)
T d2ghsa1         130 GSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG--SVCD  207 (295)
T ss_dssp             EEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE--EEEC
T ss_pred             eeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc--eEEc
Confidence            4456555554433333334678999999999877654  4677777653211  1   111 111   112222  3347


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEc-CCCC-EEEEeeC
Q psy6442         133 SERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFS-PDGE-LYASGSE  185 (231)
Q Consensus       133 ~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~s-pd~~-~laS~s~  185 (231)
                      .++.+.++.-..+.|..||. .++.+..+.--...+++++|- ||.+ +++|.+.
T Consensus       208 ~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         208 AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            88887777667789999995 677777765444568999996 5654 5555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.14  E-value=1  Score=35.68  Aligned_cols=95  Identities=15%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             cCCCEEEEEc--CCeEEEEECCCcceEEeeecc--ceeEEEEEEecCCCCEEEEecCC------------------CeEE
Q psy6442          91 RDGTTITVTH--GSCVTFLDANSLELIKEHKVP--AQVHSASLLLNSERPIFVCGGED------------------LKMY  148 (231)
Q Consensus        91 ~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d------------------~~i~  148 (231)
                      +||+++++..  +..+...|+...+..+....|  ...+.++....++...++.+++.                  +.+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            3788888874  468999999998886655443  34555454445566666665442                  2355


Q ss_pred             EEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCC
Q psy6442         149 KFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSED  186 (231)
Q Consensus       149 ~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d  186 (231)
                      .+|..+.+...+..- .+....++++|||+++.+.+.+
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEecc
Confidence            678877776555432 2345678999999988887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.17  E-value=1.1  Score=32.78  Aligned_cols=145  Identities=5%  Similarity=-0.025  Sum_probs=83.9

Q ss_pred             EEE-EEeCCCCEEEEeCCCCCceEEEEe-CCcceeEEEccCCCEEEEEcCC----eEEEEECCCcceEEeeecc-ceeEE
Q psy6442          54 RLI-SCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGS----CVTFLDANSLELIKEHKVP-AQVHS  126 (231)
Q Consensus        54 ~l~-s~s~D~ti~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~-~~~~~  126 (231)
                      .|+ +-...+.|.+.++....+...+.. ...+..+++.|....++.+..+    .|...+............. .....
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~g  171 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG  171 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE
T ss_pred             eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccce
Confidence            344 444567888888876554333322 2568899999988887765422    3554555443322222111 12233


Q ss_pred             EEEEecCCCCEE-EEecCCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCCeeee
Q psy6442         127 ASLLLNSERPIF-VCGGEDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGELYASGSEDGTLRLWQTNVGKTYGL  202 (231)
Q Consensus       127 ~~~~~~~~~~~~-~~g~~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~laS~s~d~~v~iwd~~~~~~~~~  202 (231)
                      +++  ++....+ .+-...++|...++........+.+-. ...+|++. .+.++.+-...+.|.-.|..+++....
T Consensus       172 lai--D~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         172 LTF--DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EEE--ETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEE--eecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceE
Confidence            333  5554444 444556788888885443322333322 34578876 456667767788899999988886644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.18  E-value=1.9  Score=35.33  Aligned_cols=80  Identities=21%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCCCCC-eeEEEEcCCCC-E
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGHFGP-IHCVKFSPDGE-L  179 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h~~~-V~~v~~spd~~-~  179 (231)
                      +.+.-+|..+.+....++.+.+...-.+  ...+.++..|+.|+.++-+|.++|+++.+++--... -.=+.|..+|+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~l--stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVL--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCcccee--EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4667788888888777766554432222  223445667899999999999999999876522111 11156778885 4


Q ss_pred             EEEe
Q psy6442         180 YASG  183 (231)
Q Consensus       180 laS~  183 (231)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.31  E-value=1.3  Score=36.41  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccC----CCCCeeEEEEcCCC
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKG----HFGPIHCVKFSPDG  177 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~----h~~~V~~v~~spd~  177 (231)
                      +.+.-+|..+.+.+...+.+.+...-.+  ...+.++..|+.|+.++.+|.++|+.+.++.-    +..|   +.|.-+|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~l--stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTL--TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceE--EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECC
Confidence            4567788888888777665543322222  22455666788999999999999999977642    2222   4566788


Q ss_pred             C-EEEEe
Q psy6442         178 E-LYASG  183 (231)
Q Consensus       178 ~-~laS~  183 (231)
                      + +++..
T Consensus       532 kQYv~v~  538 (573)
T d1kb0a2         532 RQYVSVA  538 (573)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6 44333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.79  E-value=2.6  Score=34.41  Aligned_cols=81  Identities=15%  Similarity=0.038  Sum_probs=50.0

Q ss_pred             CeEEEEECCCcceEEeeeccceeEEEEEEecCCCCEEEEecCCCeEEEEeCCCcceeeeccCC-CCCeeEEEEcCCCC-E
Q psy6442         102 SCVTFLDANSLELIKEHKVPAQVHSASLLLNSERPIFVCGGEDLKMYKFDYSTGAEIESFKGH-FGPIHCVKFSPDGE-L  179 (231)
Q Consensus       102 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~~d~~~~~~~~~~~~h-~~~V~~v~~spd~~-~  179 (231)
                      +.+.-+|..+.+.+.++..+.+...-.+  ...+.++..|+.|+.++-+|.++|+.+.+++-- ...-.=+.|..||+ +
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l--~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTL--YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCccee--EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            4677788888887776655433221112  113445567899999999999999999776411 11111256777885 5


Q ss_pred             EEEee
Q psy6442         180 YASGS  184 (231)
Q Consensus       180 laS~s  184 (231)
                      ++..+
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.16  E-value=2.9  Score=31.66  Aligned_cols=134  Identities=18%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             CCCEEEEeCCCCCce-EEEEeC-C-------cce--eEEEccCCC-EEEE-Ec---CCeEEEEECCCcc--eE--Eeeec
Q psy6442          61 DKTVRLWDVSASAEV-QKLEFG-A-------VPN--SLEISRDGT-TITV-TH---GSCVTFLDANSLE--LI--KEHKV  120 (231)
Q Consensus        61 D~ti~iwd~~~~~~~-~~~~~~-~-------~~~--~v~~~~~~~-~~~~-~~---~~~i~~~d~~~~~--~~--~~~~~  120 (231)
                      .|.|.++|+.+.+.. ..+... .       .+-  ++...+++. .+++ .+   ...|.+++.....  ..  .....
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            488899998765432 222221 1       223  333345665 3333 33   3467777653222  11  12222


Q ss_pred             cc--eeEEEEEEecCCCCEEEEec-----------------CCCeEEEEeCCCcceeeeccCCCCCeeEEEEcCCCCE-E
Q psy6442         121 PA--QVHSASLLLNSERPIFVCGG-----------------EDLKMYKFDYSTGAEIESFKGHFGPIHCVKFSPDGEL-Y  180 (231)
Q Consensus       121 ~~--~~~~~~~~~~~~~~~~~~g~-----------------~d~~i~~~d~~~~~~~~~~~~h~~~V~~v~~spd~~~-l  180 (231)
                      +.  ..+.+.+  .+++.+.++-.                 ..+.+..||....+.+   ...-...+.++++||+++ +
T Consensus       147 ~~~~~pNDv~~--~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~---~~~l~~pNGI~~s~d~~~ly  221 (340)
T d1v04a_         147 KLLPSVNDIVA--VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV---AEGFDFANGINISPDGKYVY  221 (340)
T ss_dssp             TTCSSEEEEEE--EETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE---EEEESSEEEEEECTTSSEEE
T ss_pred             ccccCccceEE--ecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE---cCCCCccceeEECCCCCEEE
Confidence            22  1222222  44555666521                 1234555655432222   122346789999999875 4


Q ss_pred             EEeeCCCcEEEEeCCCCCe
Q psy6442         181 ASGSEDGTLRLWQTNVGKT  199 (231)
Q Consensus       181 aS~s~d~~v~iwd~~~~~~  199 (231)
                      ++-+..+.|+.|++...+.
T Consensus       222 Va~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         222 IAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             EEEGGGTEEEEEEECTTSC
T ss_pred             EEeCCCCeEEEEEeCCCcc
Confidence            6667788899999865443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.54  E-value=3.8  Score=30.74  Aligned_cols=134  Identities=13%  Similarity=0.153  Sum_probs=76.2

Q ss_pred             EEEEeCCCCCceEE--EEeCC--cceeEEEccCCCEEEEEc--CCeEEEEECCCcceEEeeeccc--eeEEEEEEecCCC
Q psy6442          64 VRLWDVSASAEVQK--LEFGA--VPNSLEISRDGTTITVTH--GSCVTFLDANSLELIKEHKVPA--QVHSASLLLNSER  135 (231)
Q Consensus        64 i~iwd~~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~  135 (231)
                      +.+||..+++-...  .....  .....++.++++.++.+.  .+.+.+||..+..-......+.  ..+...  ..+++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~--~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSA--TMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEE--ECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccccccccee--eecCC
Confidence            67899988765432  22211  123567888998877653  3578889977654433322222  122222  35678


Q ss_pred             CEEEEecCC------CeEEEEeCCCcce--eeec-------cCCCCC-----eeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q psy6442         136 PIFVCGGED------LKMYKFDYSTGAE--IESF-------KGHFGP-----IHCVKFSPDGELYASGSEDGTLRLWQTN  195 (231)
Q Consensus       136 ~~~~~g~~d------~~i~~~d~~~~~~--~~~~-------~~h~~~-----V~~v~~spd~~~laS~s~d~~v~iwd~~  195 (231)
                      ++++.|+..      ..+.+||..+.+=  +...       ..+...     -.-+..-++++.+..+..++.+.+++..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence            888887643      3578888876531  1110       001100     1123344677788888777778888877


Q ss_pred             CCCe
Q psy6442         196 VGKT  199 (231)
Q Consensus       196 ~~~~  199 (231)
                      +...
T Consensus       212 ~~~~  215 (387)
T d1k3ia3         212 SGDV  215 (387)
T ss_dssp             TCEE
T ss_pred             cCcE
Confidence            7654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.44  E-value=1.7  Score=32.84  Aligned_cols=67  Identities=13%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             cCCCCEEEEecCC-----------CeEEEEeCCCccee--eec-cCCCCCeeEEEEcCCCCEEEEeeCC-CcEEEEeCCC
Q psy6442         132 NSERPIFVCGGED-----------LKMYKFDYSTGAEI--ESF-KGHFGPIHCVKFSPDGELYASGSED-GTLRLWQTNV  196 (231)
Q Consensus       132 ~~~~~~~~~g~~d-----------~~i~~~d~~~~~~~--~~~-~~h~~~V~~v~~spd~~~laS~s~d-~~v~iwd~~~  196 (231)
                      ..++++++.|+..           ..+.+||..+++-.  ..+ ..|.......++.+++.+++.++.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            4566777776632           13678999876421  112 2233334567899999999998755 6899999877


Q ss_pred             CC
Q psy6442         197 GK  198 (231)
Q Consensus       197 ~~  198 (231)
                      .+
T Consensus       108 ~~  109 (387)
T d1k3ia3         108 DS  109 (387)
T ss_dssp             TE
T ss_pred             Cc
Confidence            53