Psyllid ID: psy6445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
rqvgssplhyaaKKNKLDIAKILIESNRCslenkmkktplhlaAQEGYVDMCKLLIKHQidvnaqdivgssplhyaaKKNKLDIAKILIESNRCslenkmkktplhlaaQEGHVDMCKLLIKHQIDvnaqdiea
Flexible Loop (DISEMBL)
rqvgssplhyaakknkldIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA
Low Complexity Region (SEG)
RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA
Disordered region (IsUnstruct)
**************NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV*******
Disordered Region (DISOPRED)
RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA*****
Disordered Region (DISEMBL)
RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA
Disordered Region (DISPRO)
***GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.947	0.067	0.379	5e-19
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.947	0.064	0.372	5e-19
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.947	0.068	0.372	5e-19
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.947	0.029	0.372	3e-18
Q8VHK2	1430	Caskin-1 OS=Rattus norveg	no	N/A	0.947	0.088	0.343	2e-16
Q6P9K8	1431	Caskin-1 OS=Mus musculus	no	N/A	0.947	0.088	0.343	2e-16
Q8WXD9	1431	Caskin-1 OS=Homo sapiens	no	N/A	0.947	0.088	0.335	2e-16
Q8VHK1	1201	Caskin-2 OS=Mus musculus	no	N/A	0.925	0.103	0.342	1e-15
O95271	1327	Tankyrase-1 OS=Homo sapie	no	N/A	0.977	0.098	0.395	2e-15
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	no	N/A	0.977	0.099	0.395	2e-15

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct: 602 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 661

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct: 662 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 721

Query: 122 KHQIDVNAQ 130
           +HQ DVNA+
Sbjct: 722 QHQADVNAK 730

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAKKN++DIA  L+E     +   +     +HLAAQEG+VDM  LL+    +V
Sbjct: 614 GYTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANV 673

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH AA+++++++A++L+ +      + KM  TPLH+    G++ +   L+
Sbjct: 674 NLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLL 733

Query: 122 KHQIDVNAQ 130
           +H   VNA+
Sbjct: 734 QHSAKVNAK 742

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct: 598 GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANG 657

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH  +++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct: 658 NLGNKSGLTPLHLVSQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 717

Query: 122 KHQIDVNAQ 130
           +HQ DVNA+
Sbjct: 718 QHQADVNAK 726

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAKKN++DIA  L+E     +   +     +HLAAQEG+VDM  LL+    +V
Sbjct: 631 GYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANV 690

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH AA+++++++A++L+ +      + KM  TPLH+    G++ +   L+
Sbjct: 691 NLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLL 750

Query: 122 KHQIDVNAQ 130
           +H   VNA+
Sbjct: 751 QHSAKVNAK 759

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 10/137 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G  PLHYAA + + +  K+++++    ++ +     PLHLAAQ G+ D+ ++L++HQ + 
Sbjct: 82  GMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNP 141

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS--LENKMKKT-------PLHLAAQEGH 113
              D  G +PL  A +  ++ + ++L+ SN C+  LE +   T       PLHLAA+ GH
Sbjct: 142 CIVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGH 201

Query: 114 VDMCKLLIKHQIDVNAQ 130
           +D+ +LL++  ID+N Q
Sbjct: 202 IDIIRLLLQAGIDINRQ 218

May link the scaffolding protein CASK to downstream intracellular effectors.

Rattus norvegicus (taxid: 10116)

>sp|Q6P9K8|CSKI1_MOUSE Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 10/137 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G  PLHYAA + + +  K+++++    ++ +     PLHLAAQ G+ D+ ++L++HQ + 
Sbjct: 82  GMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNP 141

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS--LENKMKKT-------PLHLAAQEGH 113
              D  G +PL  A +  ++ + ++L+ SN C+  LE +   T       PLHLAA+ GH
Sbjct: 142 CMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGH 201

Query: 114 VDMCKLLIKHQIDVNAQ 130
           +D+ +LL++  ID+N Q
Sbjct: 202 IDIIRLLLQAGIDINRQ 218

May link the scaffolding protein CASK to downstream intracellular effectors.

Mus musculus (taxid: 10090)

>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 82/137 (59%), Gaps = 10/137 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G  PLHYAA + + +  K+++++    ++ +     PLHLAAQ G+ D+ ++L++HQ + 
Sbjct: 82  GMRPLHYAAWQGRKEPMKLVLKAGSAVNIPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNP 141

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS--LE-------NKMKKTPLHLAAQEGH 113
              D  G +PL  A +  ++ + ++L+ SN C+  LE       +    +PLHLAA+ GH
Sbjct: 142 CMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDATDPNGTSPLHLAAKNGH 201

Query: 114 VDMCKLLIKHQIDVNAQ 130
           +D+ +LL++  ID+N Q
Sbjct: 202 IDIIRLLLQAGIDINRQ 218

May link the scaffolding protein CASK to downstream intracellular effectors.

Homo sapiens (taxid: 9606)

>sp|Q8VHK1|CSKI2_MOUSE Caskin-2 OS=Mus musculus GN=Caskin2 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 84/140 (60%), Gaps = 16/140 (11%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G  PLHYAA + +L+  ++L+ +    N  SL+ ++   PLHLAAQ G+ ++ ++L++HQ
Sbjct: 82  GMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQI---PLHLAAQYGHYEVSEMLLQHQ 138

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS--LENKMK-------KTPLHLAAQ 110
            +    + +  +PL  A +  +L +A++L+ S+ C   LE + K        TPLHLAA+
Sbjct: 139 SNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAK 198

Query: 111 EGHVDMCKLLIKHQIDVNAQ 130
            GH ++ + L+K  I++N Q
Sbjct: 199 NGHREVIRQLLKAGIEINRQ 218

Mus musculus (taxid: 10090)

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 4   GSSPLHYAAKKNKL-DIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + L  AAKK  L  + K+    N  C        TPLHLAA    +++ + L++H  D
Sbjct: 803 GDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGAD 862

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNAQD  G  PLH AA    +DIA +LI+ N C +  +K   TPLH AAQ+G   +C LL
Sbjct: 863 VNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALL 922

Query: 121 IKHQIDVNAQDIEA 134
           + H  D   ++ E 
Sbjct: 923 LAHGADPTMKNQEG 936

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 4   GSSPLHYAAKKNKL-DIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + L  AAKK  L  + K+    N  C        TPLHLAA    +++ + L++H  D
Sbjct: 796 GDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGAD 855

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNAQD  G  PLH AA    +DIA +LI+ N C +  +K   TPLH AAQ+G   +C LL
Sbjct: 856 VNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALL 915

Query: 121 IKHQIDVNAQDIEA 134
           + H  D   ++ E 
Sbjct: 916 LAHGADPTMKNQEG 929

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
28274852	199	ankyrin repeat protein E4_2, partial [sy	0.970	0.653	0.416	1e-21
270004488	1582	hypothetical protein TcasGA2_TC003843 [T	0.932	0.079	0.425	7e-21
229582572	359	ankyrin [Sulfolobus islandicus Y.N.15.51	0.955	0.356	0.392	8e-21
189235752	2692	PREDICTED: similar to ankyrin 2,3/unc44	0.932	0.046	0.425	1e-20
432924982	913	PREDICTED: ankyrin-3-like [Oryzias latip	0.932	0.136	0.419	3e-20
189235951	1719	PREDICTED: similar to ankyrin 2,3/unc44	0.940	0.073	0.421	4e-20
409245644	309	ankyrin domain protein, partial [Wolbach	0.970	0.420	0.416	4e-20
371721795	676	ankyrin domain protein, partial [Wolbach	0.955	0.189	0.441	4e-20
28373837	126	Chain A, 4ank: A Designed Ankyrin Repeat	0.888	0.944	0.413	4e-20
409245646	307	ankyrin domain protein, partial [Wolbach	0.970	0.423	0.409	8e-20

>gi|28274852|gb|AAO25691.1| ankyrin repeat protein E4_2, partial [synthetic construct]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 2/132 (1%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q G++PLH AA K  L+I ++L++     +  +    TPLHLAAQ G++++ ++L+KH  
Sbjct: 45  QHGNTPLHLAASKGHLEIVEVLLKHGADVNANDTNGTTPLHLAAQAGHLEIVEVLLKHGA 104

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +GS+PLH AA    L+I ++L++     + ++ +  TPLHLAA  GH+++ ++
Sbjct: 105 DVNASDELGSTPLHLAATHGHLEIVEVLLKYGADVNADDTVGITPLHLAAFFGHLEIVEV 164

Query: 120 LIKHQIDVNAQD 131
           L+K+  DVNAQD
Sbjct: 165 LLKYGADVNAQD 176

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|270004488|gb|EFA00936.1| hypothetical protein TcasGA2_TC003843 [Tribolium castaneum]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 2/127 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA+KN++DIA  L+E   +   E+K   TPLHL+AQEG+ DM  LL++HQ D 
Sbjct: 630 GHTPLHIAARKNQMDIATTLLEYGAQADAESKAGFTPLHLSAQEGHSDMSSLLLEHQADP 689

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N     G +PLH  A+++++ +A++L+ +  +  ++ K   TPLH+A   GHV+M +LLI
Sbjct: 690 NHTAKNGLTPLHLCAQEDRVAVAQLLLRAGAQKDVQTKAGYTPLHVACHHGHVNMVRLLI 749

Query: 122 KHQIDVN 128
           +   +VN
Sbjct: 750 EQGAEVN 756

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229582572|ref|YP_002840971.1| ankyrin [Sulfolobus islandicus Y.N.15.51] gi|228013288|gb|ACP49049.1| Ankyrin [Sulfolobus islandicus Y.N.15.51]

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 86/130 (66%), Gaps = 2/130 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA K  +D+ ++L+E     + ++   +TPLH+AAQEG VD+ ++L++   D 
Sbjct: 171 GQTPLHMAAHKGDVDVVRVLLERGADPNAKDNNGQTPLHMAAQEGDVDVVRVLLERGADP 230

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G +PLH AA K  +D+ ++L+E     + ++   +TPLH+AA +GHVD+ ++L+
Sbjct: 231 NAKDNNGQTPLHMAAHKGDVDVVRVLLERGADPNAKDNNGQTPLHMAAHKGHVDVVRVLL 290

Query: 122 KHQIDVNAQD 131
           +   D NA+D
Sbjct: 291 ERGADPNAKD 300

Source: Sulfolobus islandicus Y.N.15.51

Species: Sulfolobus islandicus

Genus: Sulfolobus

Family: Sulfolobaceae

Order: Sulfolobales

Class: Thermoprotei

Phylum: Crenarchaeota

Superkingdom: Archaea

>gi|189235752|ref|XP_001807645.1| PREDICTED: similar to ankyrin 2,3/unc44 [Tribolium castaneum]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 2/127 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA+KN++DIA  L+E   +   E+K   TPLHL+AQEG+ DM  LL++HQ D 
Sbjct: 630 GHTPLHIAARKNQMDIATTLLEYGAQADAESKAGFTPLHLSAQEGHSDMSSLLLEHQADP 689

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N     G +PLH  A+++++ +A++L+ +  +  ++ K   TPLH+A   GHV+M +LLI
Sbjct: 690 NHTAKNGLTPLHLCAQEDRVAVAQLLLRAGAQKDVQTKAGYTPLHVACHHGHVNMVRLLI 749

Query: 122 KHQIDVN 128
           +   +VN
Sbjct: 750 EQGAEVN 756

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432924982|ref|XP_004080681.1| PREDICTED: ankyrin-3-like [Oryzias latipes]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 6/131 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G +PLH AAKKN+++I+  L+E    +L N + +   TPLHLAAQEG VD+  LL+    
Sbjct: 632 GYTPLHIAAKKNQMEISTTLLE--YGALTNTVTRQGITPLHLAAQEGSVDIVTLLLARGS 689

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
            +NA +  G +PLH AA+++K+++A++L+        E K+  TPLH+A   G++ M   
Sbjct: 690 PINAGNKSGLTPLHLAAQEDKVNVAEVLVNHGANIDPETKLGYTPLHVACHYGNIKMVSF 749

Query: 120 LIKHQIDVNAQ 130
           L+KHQ +VNA+
Sbjct: 750 LLKHQANVNAK 760

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189235951|ref|XP_001809144.1| PREDICTED: similar to ankyrin 2,3/unc44 [Tribolium castaneum]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAKKN++DIA  L+E   + + E+K   TPLHL+AQEG+ DM  LLI+H+ D 
Sbjct: 600 GHTPLHIAAKKNQMDIANTLLEYGAKPNAESKAGFTPLHLSAQEGHCDMTDLLIEHKADT 659

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N +   G +PLH  A+++K+ +A+IL++         K   TPLH+A   G ++M + L+
Sbjct: 660 NHRARNGLAPLHLCAQEDKVPVAEILVKNGGEVDASTKNGYTPLHIACHYGQINMVRFLL 719

Query: 122 KHQIDVNA 129
            H  +V A
Sbjct: 720 SHGANVKA 727

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|409245644|gb|AFV33503.1| ankyrin domain protein, partial [Wolbachia endosymbiont of Drosophila melanogaster]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 86/132 (65%), Gaps = 2/132 (1%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           +VG +PLH AA    +++ K LI+     ++++K+ +TPLH AA  GY+++ K LIK + 
Sbjct: 111 EVGRTPLHDAANNGHIEVVKHLIKKGADVNVQSKVGRTPLHNAANNGYIEVVKHLIKKEA 170

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
           DVN  D  G SPLH AAK  ++++ K LIE     ++++K+ +TPLH AA+ GH  + ++
Sbjct: 171 DVNVVDQYGRSPLHDAAKHGRIEVVKHLIEKEADVNVQSKVGRTPLHNAAKHGHTQVVEV 230

Query: 120 LIKHQIDVNAQD 131
           L+K   DVN QD
Sbjct: 231 LLKKGADVNIQD 242

Source: Wolbachia endosymbiont of Drosophila melanogaster

Species: Wolbachia endosymbiont of Drosophila melanogaster

Genus: Wolbachia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|371721795|gb|AEX55220.1| ankyrin domain protein, partial [Wolbachia pipientis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 84/129 (65%), Gaps = 1/129 (0%)

Query: 4   GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA++   D+ KILI +    + ++    TPLHLAA+EG  D+ K+LI    +V
Sbjct: 283 GCTPLHLAAREGCEDVVKILIAKGANVNAKDDDGCTPLHLAAREGCEDVVKILIAKGANV 342

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
           NA+D  G +PLH AA+ N +++ KIL+E    + E  + +TPLHLAA+EGH D+  +LIK
Sbjct: 343 NAKDDDGCTPLHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHKDVVDILIK 402

Query: 123 HQIDVNAQD 131
               VNA++
Sbjct: 403 KGAKVNAEN 411

Source: Wolbachia pipientis

Species: Wolbachia pipientis

Genus: Wolbachia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|28373837|pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA+   L++ K+L+E+    + ++K  +TPLHLAA+ G++++ KLL++   DV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G +PLH AA+   L++ K+L+E+    + ++K  +TPLHLAA+ GH+++ KLL+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 122 K 122
           +
Sbjct: 122 E 122

Source: synthetic construct

Species: synthetic construct

>gi|409245646|gb|AFV33504.1| ankyrin domain protein, partial [Wolbachia endosymbiont of Drosophila simulans]

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 86/132 (65%), Gaps = 2/132 (1%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           +VG +PLH AA    +++ K LI+     ++++K+ +TPLH AA  GY+++ K LIK + 
Sbjct: 118 EVGRTPLHDAANNGHIEVVKHLIKKGADVNVQSKVGRTPLHNAANNGYIEVVKHLIKKEA 177

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
           DVN  D  G +PLH AAK  ++++ K LIE     ++++K+ +TPLH AA+ GH  + ++
Sbjct: 178 DVNVVDQYGRTPLHDAAKHGRIEVVKHLIEKEADVNVQSKVGRTPLHNAAKHGHTQVVEV 237

Query: 120 LIKHQIDVNAQD 131
           L+K   DVN QD
Sbjct: 238 LLKKGADVNIQD 249

Source: Wolbachia endosymbiont of Drosophila simulans

Species: Wolbachia endosymbiont of Drosophila simulans

Genus: Wolbachia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.947	0.111	0.379	8.5e-19
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.947	0.068	0.379	1.3e-18
RGD|1309620	1864	Ank1 "ankyrin 1, erythrocytic"	0.947	0.068	0.379	1.3e-18
UNIPROTKB|F1M3K5	1881	Ank1 "Protein Ank1" [Rattus no	0.947	0.067	0.379	1.3e-18
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.947	0.067	0.379	1.3e-18
UNIPROTKB|F1M651	1888	Ank1 "Protein Ank1" [Rattus no	0.947	0.067	0.379	1.3e-18
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.947	0.066	0.379	1.3e-18
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.947	0.067	0.379	1.6e-18
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.947	0.068	0.372	2.6e-18
FB|FBgn0011747	1549	Ank "Ankyrin" [Drosophila mela	0.940	0.081	0.385	2.7e-18

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 8.5e-19, P = 8.5e-19
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N+L++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   601 GYTPLHIAAKQNQLEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 660

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   661 NLGNKSGLTPLHLVAQEGHIPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 720

Query:   122 KHQIDVNAQ 130
             +H+ DVNA+
Sbjct:   721 QHKADVNAK 729

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   596 GYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 655

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   656 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 715

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   716 QHQADVNAK 724

GO:0007165 "signal transduction" evidence=IEA

RGD|1309620 Ank1 "ankyrin 1, erythrocytic" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   598 GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANG 657

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   658 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 717

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   718 QHQADVNAK 726

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=IMP

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO

GO:0015672 "monovalent inorganic cation transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0031430 "M band" evidence=IDA

GO:0031672 "A band" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048821 "erythrocyte development" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1M3K5 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   608 GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANG 667

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   668 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 727

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   728 QHQADVNAK 736

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   635 GYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 694

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   695 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 754

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   755 QHQADVNAK 763

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1M651 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   598 GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANG 657

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   658 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 717

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   718 QHQADVNAK 726

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   606 GYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 665

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   666 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 725

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   726 QHQADVNAK 734

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 49/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   602 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 661

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   662 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 721

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   722 QHQADVNAK 730

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 48/129 (37%), Positives = 81/129 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct:   598 GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANG 657

Query:    63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             N  +  G +PLH  +++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct:   658 NLGNKSGLTPLHLVSQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 717

Query:   122 KHQIDVNAQ 130
             +HQ DVNA+
Sbjct:   718 QHQADVNAK 726

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

FB|FBgn0011747 Ank "Ankyrin" [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 49/127 (38%), Positives = 80/127 (62%)

Query:     4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
             G SPLH AA+   +D+ ++L+E    S   K   TPLH+AAQEG+V + ++L++H  +++
Sbjct:   662 GFSPLHLAAQGGNVDMVQLLLEYGVISAAAKNGLTPLHVAAQEGHVLVSQILLEHGANIS 721

Query:    64 AQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
              +   G +PLH AA    LD+ K  IE++    + + +  TPLH AAQ+GH+ +  LL++
Sbjct:   722 ERTRNGYTPLHMAAHYGHLDLVKFFIENDADIEMSSNIGYTPLHQAAQQGHIMIINLLLR 781

Query:   123 HQIDVNA 129
             H+ + NA
Sbjct:   782 HKANPNA 788

GO:0045170 "spectrosome" evidence=IDA;TAS

GO:0045169 "fusome" evidence=NAS;IDA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-28
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-08
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	4e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
smart00248	30	smart00248, ANK, ankyrin repeats	8e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  109 bits (275), Expect = 4e-32
 Identities = 49/120 (40%), Positives = 82/120 (68%), Gaps = 2/120 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA    L++ K+L+E+    + ++   +TPLHLAA+ G++++ KLL++   DV
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G++PLH AA+   LD+ K+L++     +  +K  +TPLHLAA+ GH+++ KLL+
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.0 bits (247), Expect = 9e-28
 Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           ++  +TPLHLAA  G++++ KLL+++  DVNA+D  G +PLH AAK   L+I K+L+E  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 93  RCS-LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                 +K   TPLHLAA+ G++D+ KLL+KH  DVNA+D +
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 85.0 bits (211), Expect = 7e-23
 Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 3/93 (3%)

Query: 40  LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN 98
           LHLAA+ G +++ KLL++   DVN  D    + LH AA+   L+I K+L+E     + ++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 99  KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           K   T LHLAA+ G++++ KLL++H  D+N +D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 1e-22
 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 8  LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
          LH AAK   L++ K+L+E     +      T LHLAA+ G +++ KLL++H  DVNA+D 
Sbjct: 1  LHLAAKNGNLELVKLLLEKG-ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 68 VGSSPLHYAAKKNKLDIAKILIE 90
           G++ LH AA+   L+I K+L+E
Sbjct: 60 DGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G +PLH AA    L++ K+L+E+    + ++   +TPLHLAA+ GH+++ KLL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 122 KHQIDVNAQD 131
           +   DVNA+D
Sbjct: 61  EKGADVNARD 70

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH A    KLDI K+LI       + N  K +PLHLA   G +   +LLI H+  +
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           + +D  G +PL  A  K  + I K+L++S  N            L  A +   +D+ +L 
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221

Query: 121 IKHQIDVN 128
           IK   D N
Sbjct: 222 IKRGADCN 229

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 5  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           + LH AA+   L+I K+L+E     + ++K   T LHLAA+ G +++ KLL++H  D+N
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Query: 64 AQD 66
           +D
Sbjct: 89 LKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 73  LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
           LH AAK   L++ K+L+E     +      T LHLAA+ G++++ KLL++H  DVNA+D 
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 133 E 133
           +
Sbjct: 60  D 60

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 24/149 (16%)

Query: 4   GSSPLHYAA--KKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVD--MCKLLIK 57
           G +PL YA   K N   I + L+  N  ++   N   +  LHL  +   +D  + KLLI 
Sbjct: 106 GITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164

Query: 58  HQIDVNAQ----------------DIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKM 100
             +D+NA+                D+ G +PLHYA   N  +  K L++     +L NK 
Sbjct: 165 KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY 224

Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
             TPLH+A    + ++ KLL+ +   +  
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)

Query: 5   SSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYV-----DMCKLLIK 57
             PL+ A +   +D+ KIL++ N   + +  K   TPLH  +   Y      ++ KLL++
Sbjct: 36  VLPLYLAKEARNIDVVKILLD-NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE 94

Query: 58  HQIDVNAQDIVGSSPLHYAA--KKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGH 113
           +  +VNA D  G +PL YA   K N   I + L+  N  ++   N   +  LHL  +   
Sbjct: 95  YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLHLYLESNK 153

Query: 114 VD--MCKLLIKHQIDVNAQD 131
           +D  + KLLI   +D+NA++
Sbjct: 154 IDLKILKLLIDKGVDINAKN 173

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 15  NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLH 74
            K  I  IL      ++++   KT LH A ++G ++  K+L ++  DVN +D  G  P+H
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH 162

Query: 75  YAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
            A K N  DI K+L+E     ++++   ++PLH AA+ G     KLLI H
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH 212

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.2 bits (131), Expect = 4e-11
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
          T LH AA  G +++ K L++  +D+N  D  G++ LH AA+   L++ K+L+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.1 bits (137), Expect = 7e-11
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL-----DIAKILIESN 92
            PLH AA +G   + KLL+    DVNA+D  G +PLH AA          ++AK+L+E+ 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 93  RCS----LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                  L ++   TPLH AA  G  D+ +LL++   D N+++  
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 32/125 (25%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPL-------HY-------------- 75
           +TPLH+AA +GY D   +L+KH  +V+ +D  G++ L       H+              
Sbjct: 559 RTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD 618

Query: 76  ----------AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
                     AAK+N L   K L++       E+    T L +A  E HVDM +LLI + 
Sbjct: 619 PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678

Query: 125 IDVNA 129
            DV+ 
Sbjct: 679 ADVDK 683

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK-KTPLHLAAQEGYVDMCKLLI---KHQ 59
           G SP+  A K    +  K+L++            ++ LH A +EG V   + L+   K  
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
            DV  +D  G +PLH A    KLDI K+LI       + N  K +PLHLA   G +   +
Sbjct: 95  DDVFYKD--GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152

Query: 119 LLIKHQIDVNAQD 131
           LLI H+  ++ +D
Sbjct: 153 LLIDHKACLDIED 165

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 1   RQVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           R  G++ LHYA +     + + +L      ++ +K   +PLH A +     +  +L+++ 
Sbjct: 165 RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG 224

Query: 60  IDVNAQDIVGSSPLHYAAKKNK-LDIAKILIESNRC--SLENKMKKTPLHLAAQEGHVDM 116
              +A+D  G++PLH +    K  DI K+L+E      +    +  T LH + +      
Sbjct: 225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSE--RK 282

Query: 117 CKLLIKHQIDVNAQDIE 133
            KLL+++  D+N+ +  
Sbjct: 283 LKLLLEYGADINSLNSY 299

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 8   LHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
           LHYA KK  L+  K+L E     ++E+     P+H+A +  + D+ KLL++     N +D
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Query: 67  IVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGHVDMCKLLIKHQ 124
             G SPLH AA+       K+LI  +   + NK K   TPLH A         +LLI + 
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLI-DHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINNA 245

Query: 125 IDVNAQDIE 133
             +N QDI+
Sbjct: 246 -SINDQDID 253

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 32/160 (20%)

Query: 1   RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
            ++G S L  AA +N+      L+ +  C     +  T LH  +   YVD  + ++ H +
Sbjct: 49  DRLGRSALFVAAIENENLELTELLLNLSCRGA--VGDTLLHAIS-LEYVDAVEAILLHLL 105

Query: 61  D----------VNAQDI----VGSSPLHYAAKKNKLDIAKILIESN-----RCS----LE 97
                       N Q       G + LH AA +   +I K+L+E       R      ++
Sbjct: 106 AAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK 165

Query: 98  NKMK------KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           ++        ++PL+ AA  G   +  LL +   D+   D
Sbjct: 166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G  P+H A K N  DI K+L+E     ++++   ++PLH AA+ G     KLLI H   +
Sbjct: 157 GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQ-EGHVDMCKLLI 121
             +   G +PLH A   N+    ++LI +   + ++    TPLH A      +D+  +L+
Sbjct: 217 MNKCKNGFTPLHNAIIHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL 275

Query: 122 KHQIDVNAQD 131
            H+ D++ +D
Sbjct: 276 YHKADISIKD 285

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 27/152 (17%)

Query: 5   SSPLHYAA-----KKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQE--GYVDMCKLLI 56
           S+PLHY +       +  +I K+L+E             TPL  A  +      + + L+
Sbjct: 69  STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL 128

Query: 57  KHQIDVNAQDIVGSSPLHYAAK--KNKLDIAKILIESN-----RCSLE------------ 97
            +  +VN ++  G + LH   +  K  L I K+LI+       +  +             
Sbjct: 129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIK 188

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           +    TPLH A    + +  K L+    + N 
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)

Query: 2   QVGSSPLHYAAKKNKL-----DIAKILIESNRCS----LENKMKKTPLHLAAQEGYVDMC 52
             G +PLH AA          ++AK+L+E+        L ++   TPLH AA  G  D+ 
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 53  KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           +LL++   D N+++  G + L  AAK  ++++ K+L++  
Sbjct: 164 ELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 3e-08
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 69  GSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           G + LH AA   +L++ K L+E     +  ++   T LH+AA+ G++++ KLL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           TPLHLAA+ GH+++ KLL++   DVNA+D
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 5   SSPLHYAAKKNKLD--IAKILIESNRCSLENKMKKTPLHLAAQEGY-VDMCKLLIKHQID 61
           ++PLH+A++   L   + K+L      + +N   +TPL+L A+ GY  +  + LI    D
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333

Query: 62  VNAQDIVGSSPLHYAAK--KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
           VNA D +  +PLH A+   +NK  +  +L      +  +   KTP+H AA   +V +   
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

Query: 120 LIKHQIDVNA 129
           L+ +  D+ A
Sbjct: 394 LLDYGADIEA 403

Length = 682

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 4   GSSPLHYAAKK----NKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVD---MCKL 54
           G + LHY  +     + L     + + NR      N+  K  +H+ +     D     KL
Sbjct: 17  GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76

Query: 55  LIKHQIDVNAQD-IVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQE 111
           L++   D+N ++ + G++PLH A      ++A  L      ++E  N   KTP ++A + 
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER 136

Query: 112 GHVDMCKLLIK 122
               M  +L  
Sbjct: 137 HDAKMMNILRA 147

Length = 154

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 21/141 (14%)

Query: 4   GSSPLHYAAK--KNKLDIAKILIESN-----RCSLE------------NKMKKTPLHLAA 44
           G + LH   +  K  L I K+LI+       +  +             +    TPLH A 
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 45  QEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTP 104
                +  K L+    + N  +  G +PLH A   N  +I K+L+ +        + +T 
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS--IKTIIETL 258

Query: 105 LHLAAQEGHVDMCKLLIKHQI 125
           L+   ++ +      ++K  I
Sbjct: 259 LYFKDKDLNTITKIKMLKKSI 279

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 10/136 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAA-----QEGYVDMCKLLIK 57
           G  PLH AA K    I K+L+ S    + ++    TPLHLAA      EG +++ KLL++
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 58  H---QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGH 113
                   N +D  G++PLH+AA     DI ++L+E     +  N    T L  AA+ G 
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192

Query: 114 VDMCKLLIKHQIDVNA 129
           +++ KLL+   + ++ 
Sbjct: 193 IELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 16/29 (55%), Positives = 24/29 (82%)

Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
          TPLHLAA+ G++++ KLL++   DVNA+D
Sbjct: 4  TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 20/144 (13%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLEN--------KMKKTPLHLAAQEGYV-DMCKL 54
           G +PLH     +   +  I+    R  LE         +   TPLHL        D+ KL
Sbjct: 47  GKTPLHLYLHYSSEKVKDIV----RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKL 102

Query: 55  LIKHQIDVNAQDIVGSSPLH-YAAKKN-KLDIAKILIE--SNRCSLENKMKKTPLH--LA 108
           LIK   DVNA+D VG +PLH Y +  N    + ++L+   ++  +L +    TPL   L 
Sbjct: 103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLK 161

Query: 109 AQEGHVDMCKLLIKHQIDVNAQDI 132
           ++  +V++ +LLI    DV A D 
Sbjct: 162 SRNANVELLRLLIDAGADVYAVDD 185

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4  GSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEGYVDMCKLLI 56
          G + LH AA   +L++ K L+E     +  ++   T LH+AA+ G +++ KLL+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 25 ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA 76
               +  +    TPLHLAA+ G +++ + L+K  +D+N +D  G + L  A
Sbjct: 5  GPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 54  LLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLA 108
           LL    ID+NA D  G++PLH AAK   L++ + L++     +L +    T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)

Query: 13  KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS 71
           ++++L IA++L+E     + ++    TP+H AA+ G   M  LL+ +  DVN   +   S
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213

Query: 72  PLHYAAKKNKLDIAKILIES------NRCSLENKM------------------------K 101
            L  A     +D  K +I++      N  SL   +                        K
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273

Query: 102 KTPLHLAAQEGHVD-MCKLLIKHQIDVNAQDIEA 134
            TPLH A+Q   +  +   L++   DVNA++I+ 
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 41  HLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENK 99
            LAA    V   ++L+    D N +D  G +PLH A     + + ++L+E     +L +K
Sbjct: 88  QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 100 MKKTPLHLAAQEGHVDMCKLLIKHQI 125
             KTPL LA + G  ++ +LL +H  
Sbjct: 147 DGKTPLELAEENGFREVVQLLSRHSQ 172

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAA-----KKNKLDIAKI 87
            K    PL+LA +   +D+ K+L+ +  D+N+     S+PLHY +       +  +I K+
Sbjct: 32  YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL 91

Query: 88  LIESNRCSLENKMKK-TPLHLAAQE--GHVDMCKLLIKHQIDVNA 129
           L+E             TPL  A  +      + + L+ +  +VN 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI 136

Length = 422

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 32/152 (21%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESN-----RCS----LENKMK------KTPLHLAAQE 46
             G + LH AA +   +I K+L+E       R      ++++        ++PL+ AA  
Sbjct: 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL 185

Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL------------DIAKILIESNRC 94
           G   +  LL +   D+   D +G++ LH    +N+             + A  L++  R 
Sbjct: 186 GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD 245

Query: 95  SLE-----NKMKKTPLHLAAQEGHVDMCKLLI 121
           S E     N    TPL LAA+EG + + +L +
Sbjct: 246 SKELEVILNHQGLTPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 20  AKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
           A+IL+      +  +   +TPLH+A   G+V + ++L++   D    D  G +PL  A +
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 79  KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
               ++ ++L   ++C  E      P     +   ++   +   H
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSHH 202

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 7/91 (7%)

Query: 6   SPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLA--AQEGYVDMCKLLIKHQID 61
           +P+HYAA +N + I   L++     +E   +K  T LH A      Y+ + K LI    +
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYG-ADIEALSQKIGTALHFALCGTNPYMSV-KTLIDRGAN 434

Query: 62  VNAQDIVGSSPLHYAAKKN-KLDIAKILIES 91
           VN+++   S+PLHYA KKN KLD+ ++L+++
Sbjct: 435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 36  KKTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSPLHYAAKK--NKLDIAKILIESN 92
           K TPLH A+Q   +  +   L++   DVNA++I G +PL+  AK   +  +I  +++   
Sbjct: 273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA 332

Query: 93  RCSLENKMKKTPLHLAAQ-EGHVDMCKLLIKHQIDVNAQD 131
             +  +++  TPLH A+  + + D+   L++   +VNA+D
Sbjct: 333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD 372

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 45  QEGYVDMCKLLIKHQI---DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
           QE  V + K  ++H     D+N  D++G +   +       ++  +    N   LE  +K
Sbjct: 487 QEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLK 546

Query: 102 ------------KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                       +TPLH+AA +G+ D   +L+KH  +V+ +D  
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 39/169 (23%)

Query: 4   GSSPLHYAAKK--NKLDIAKILIESNRCSLENKMKKTPLHLAAQ-EGYVDMCKLLIKHQI 60
           G +PL+  AK   +  +I  +++     +  +++  TPLH A+  +   D+   L++   
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGA 366

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIE------------------------------ 90
           +VNA+D    +P+HYAA +N + I   L++                              
Sbjct: 367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK 426

Query: 91  -----SNRCSLENKMKKTPLHLAAQEG-HVDMCKLLIKHQIDVNAQDIE 133
                    + +NK   TPLH A ++   +D+ ++L+ +  DVNA +I+
Sbjct: 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ 475

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 8e-05
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           +TPLHLAA+ G++++ KLL+    D+NA
Sbjct: 3   RTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN----- 92
           TPL  A + G   + +L IKH  D+N  +     PL  A K    DI K+LI++      
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96

Query: 93  -------------------RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
                                ++++   KT LH A ++G ++  K+L ++  DVN +D 
Sbjct: 97  LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           T LH AA  G +++ K L++  +D+N  D +
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDED 33

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 48  YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN--------K 99
            V+  + L+    DVN +   G +PLH     +   +  I+    R  LE         +
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIV----RLLLEAGADVNAPER 81

Query: 100 MKKTPLHLAAQEGHV-DMCKLLIKHQIDVNAQD 131
              TPLHL        D+ KLLIK   DVNA+D
Sbjct: 82  CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD 114

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           TPLHLAA+ G++++ KLL++H  D+NA
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 37 KTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
          +TPLHLAA+ G +++ KLL+    D+NA
Sbjct: 3  RTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 90  ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
                +  +    TPLHLAA+ G +++ + L+K  +D+N +D
Sbjct: 5   GPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD 46

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           G +PLH A     + + ++L+E     +L +K  KTPL LA + G+ ++ +LL +H  
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172

Length = 664

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNA 64
          TPLHLAA+ G +++ KLL++H  D+NA
Sbjct: 4  TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 40  LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI----ESNRCS 95
           L  AA+   +   K L+K  ++V+++D  G++ L  A  ++ +D+ ++LI    + ++ +
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Query: 96  LENKMKKTPLHLAAQE---GH 113
            ++    T L    Q+   GH
Sbjct: 686 TDDDFSPTELRELLQKRELGH 706

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 4   GSSPLHYAAKKNK-LDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           G++PLH +    K  DI K+L+E      +    +  T LH + +       KLL+++  
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSE--RKLKLLLEYGA 291

Query: 61  DVNAQDIVGSSPLHYAAKKNK-LDIAKILIESNRCSLENKMK 101
           D+N+ +    +PL  A K+   ++I +ILI SN C L+    
Sbjct: 292 DINSLNSYKLTPLSSAVKQYLCINIGRILI-SNICLLKRIKP 332

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 4  GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLA 43
          G++PLH AAK   L++ + L++     +L +    T L LA
Sbjct: 16 GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 23/124 (18%)

Query: 13  KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ----DIV 68
           KKNK+ IA IL  S +                   Y D+   ++K   D  A     +  
Sbjct: 27  KKNKICIANILYSSIKFH-----------------YTDIIDAILKLGADPEAPFPLSENS 69

Query: 69  GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
            ++PL YA   +  D AK+LI   ++      + K TPL+++   G +   ++L+ +  D
Sbjct: 70  KTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD 129

Query: 127 VNAQ 130
           +N Q
Sbjct: 130 INIQ 133

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG4412|consensus	226		100.0
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02743	166	Viral ankyrin protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
KOG0509|consensus	600		99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
KOG0509|consensus	600		99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02741	169	hypothetical protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
KOG0510|consensus	929		99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02736	154	Viral ankyrin protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0508|consensus	615		99.93
KOG0502|consensus	296		99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02884	300	ankyrin repeat protein; Provisional	99.93
KOG0508|consensus	615		99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.92
KOG0502|consensus	296		99.92
KOG0510|consensus	929		99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.91
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.91
KOG0514|consensus	452		99.91
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.9
KOG4177|consensus	1143		99.9
KOG4177|consensus	1143		99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0512|consensus	228		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0195|consensus	448		99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
KOG0195|consensus	448		99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG0514|consensus	452		99.84
KOG0512|consensus	228		99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG0507|consensus	854		99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.82
KOG4214|consensus	117		99.81
KOG3676|consensus	782		99.8
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0507|consensus	854		99.77
KOG3676|consensus	782		99.76
KOG0505|consensus	527		99.76
KOG4214|consensus	117		99.76
KOG0515|consensus	752		99.74
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.72
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.71
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.68
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.67
KOG1710|consensus	396		99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.64
KOG4369|consensus	2131		99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.6
KOG0515|consensus	752		99.53
KOG1710|consensus	396		99.51
KOG4369|consensus	2131		99.47
KOG0818|consensus	669		99.38
KOG0506|consensus	622		99.36
KOG0783|consensus	1267		99.33
KOG3609|consensus	822		99.27
KOG0818|consensus	669		99.23
KOG0506|consensus	622		99.22
PF13606	30	Ank_3: Ankyrin repeat	99.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.19
KOG0705|consensus	749		99.1
KOG0705|consensus	749		99.08
KOG0782|consensus	1004		99.08
PF13606	30	Ank_3: Ankyrin repeat	99.07
KOG0782|consensus	1004		99.07
KOG0783|consensus	1267		99.01
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.01
KOG0511|consensus	516		98.99
KOG0522|consensus	560		98.95
KOG0520|consensus	975		98.86
KOG0522|consensus	560		98.82
KOG0521|consensus	785		98.71
KOG0511|consensus	516		98.7
KOG0521|consensus	785		98.5
KOG3609|consensus	822		98.48
KOG2384|consensus	223		98.47
KOG2384|consensus	223		98.4
KOG0520|consensus	975		98.25
KOG2505|consensus	591		97.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.78
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.63
KOG2505|consensus	591		97.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.63
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.23
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.12
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.94
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.28

>KOG4412|consensus

Probab=100.00  E-value=7.7e-37  Score=172.95  Aligned_cols=134  Identities=34%  Similarity=0.506  Sum_probs=119.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~   77 (134)
                      |.+|+||||+||..|+.+++.+|++..  .++.+|..|++|||+|+..|+.++|+.|+.+ +.+++..+..|+||||+|+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence            458999999999999999999999755  4466788899999999999999999999998 8999999999999999999


Q ss_pred             HhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          78 KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        78 ~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++.+++++|++.| .+..++..+.||||.|+.-|..+++++|+..|+.++..|.+|
T Consensus       115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G  172 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYG  172 (226)
T ss_pred             cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccC
Confidence            999999999999999 788899999999999999999999999999999998888876

>KOG4412|consensus

Probab=100.00  E-value=2.6e-34  Score=162.72  Aligned_cols=134  Identities=31%  Similarity=0.469  Sum_probs=128.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|+||||+|+..|+.++|+.|+.. + +.+..+..|.|+||+|+.+|+.+++++|++.|..++.+|..+.||+|-|+.
T Consensus        69 DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa  148 (226)
T KOG4412|consen   69 DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA  148 (226)
T ss_pred             cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHh
Confidence            67899999999999999999999998 5 568889999999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .|..+++++|+..+ ..+..+..|+||||.|.-.++.+....|++.|++++.+|.+|
T Consensus       149 vGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  149 VGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             ccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC
Confidence            99999999999999 889999999999999988899999999999999999999876

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=160.27  Aligned_cols=131  Identities=21%  Similarity=0.321  Sum_probs=73.6

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCC-CChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK-KTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAK   78 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~   78 (134)
                      +.|.||||+|+..|+.+++++|++.+ +.+..+..| .||||+|+..|+.+++++|++.+...  .+ ..|.||||+|+.
T Consensus        92 ~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~  169 (284)
T PHA02791         92 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIK  169 (284)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHH
Confidence            44555555555555555555555555 223344444 25555555555555555555553321  11 134566666666


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCCh-hhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTP-LHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~-l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .|+.+++++|+++| +++..+..+.|| ||+|+..++.+++++|+++|++++.+|.+|
T Consensus       170 ~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        170 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             cCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            66666666666666 555555555554 666666666666666666666666666543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.6e-30  Score=160.12  Aligned_cols=132  Identities=23%  Similarity=0.283  Sum_probs=97.4

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG-SSPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~   80 (134)
                      +|.||||.|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|+..|++++..+..| .||+|+|+..+
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence            4567777777777777777777766 345566777777777777777777777777777777666665 37777788778


Q ss_pred             cHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          81 KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        81 ~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+++++|++.+........+.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       140 ~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g  193 (284)
T PHA02791        140 DVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL  193 (284)
T ss_pred             CHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC
Confidence            888888877765211111247899999999999999999999999998887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.7e-29  Score=148.60  Aligned_cols=134  Identities=19%  Similarity=0.252  Sum_probs=116.0

Q ss_pred             CCCCccHHHHHHHhC--CHHHHHHHHhhC-cccccc-cCCCChhhHHHhh---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy6445           1 RQVGSSPLHYAAKKN--KLDIAKILIESN-RCSLEN-KMKKTPLHLAAQE---GYVDMCKLLIKHQIDVNAQDIVGSSPL   73 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~--~~~~~~~ll~~~-~~~~~~-~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l   73 (134)
                      |..|.||||.|+..+  +.+++++|+++| +.+.++ ..|.||||+|+..   ++.+++++|++.|++++.++..|.||+
T Consensus        48 ~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpL  127 (209)
T PHA02859         48 NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLL  127 (209)
T ss_pred             CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            567999999999855  899999999999 446665 5799999998754   468999999999999999999999999


Q ss_pred             HHHHH--hCcHHHHHHHHhcC-CCCCCCCCCCChhhH-HHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          74 HYAAK--KNKLDIAKILIESN-RCSLENKMKKTPLHL-AAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        74 ~~a~~--~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~-a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+|+.  .++.+++++|++.| +++.++..|.||||. ++..++.+++++|++.|++++.+|..|
T Consensus       128 h~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g  192 (209)
T PHA02859        128 HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSG  192 (209)
T ss_pred             HHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            99876  46899999999999 888899999999995 566789999999999999999998776

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9e-29  Score=162.16  Aligned_cols=130  Identities=26%  Similarity=0.361  Sum_probs=88.0

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCcc--cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      +.+|||.|+..|+.+++++|++.+..  ...+..|.||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..++
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~  147 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGD  147 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34444444444444444444444421  2234456777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      .+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus       148 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~  200 (413)
T PHA02875        148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN  200 (413)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence            77777777777 66677777777777777777777777777777777766554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=142.43  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=118.6

Q ss_pred             CCCCccHHHHHHHhCCH----HHHHHHHhhCc-ccccccCCCChhhHHHhhCCHH---HHHHHHhcCCCCCCCC-CCCCc
Q psy6445           1 RQVGSSPLHYAAKKNKL----DIAKILIESNR-CSLENKMKKTPLHLAAQEGYVD---MCKLLIKHQIDVNAQD-IVGSS   71 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~----~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~~~~-~~~~t   71 (134)
                      |.++.++||.||+.|+.    +++++|++.+. .+.++..|.||||+|+..|+.+   ++++|+..|.+++.++ ..|.|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            45788999999999998    45556667774 4667889999999999998865   4899999999999998 48999


Q ss_pred             HHHHHHHhCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          72 PLHYAAKKNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        72 ~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |||+|+..++.+++++|++ .+ +....+..+.|||++|+..++.+++++|+++|++++.++..|
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            9999999999999999995 67 888899999999999999999999999999999999988765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=162.39  Aligned_cols=131  Identities=24%  Similarity=0.410  Sum_probs=120.8

Q ss_pred             CC-CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QV-GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~-g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      .. |.||||.|+..|+.+++++|++.| +.+..+..|.||||.|+..++.+++++|++.|++++.++..|.||+|+|+..
T Consensus       165 ~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        165 RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY  244 (477)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            44 999999999999999999999999 5577889999999999999999999999999999999999999999999976


Q ss_pred             -CcHHHHHHHHhcC-CCCCCCC-CCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 -NKLDIAKILIESN-RCSLENK-MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 -~~~~~~~~Ll~~~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                       ++.+++++|++.| +.+..+. .|.||||+|  .++.+++++|+++|++++..|..|
T Consensus       245 ~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        245 CKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence             7899999999999 7776664 799999999  567899999999999999998876

>KOG0509|consensus

Probab=99.96  E-value=7.5e-29  Score=162.37  Aligned_cols=131  Identities=31%  Similarity=0.461  Sum_probs=98.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccc-cCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLEN-KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |++|.++||+|+.+++++++++|+++|+ .+... .-+.||||+|+++|+..++.+|+++|+++..+|..|.+|+|.|++
T Consensus        75 D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~  154 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQ  154 (600)
T ss_pred             CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHH
Confidence            5677777777777777777777777773 34444 456677777777777777777777777777777777777777777


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      .++.-++-+|+.++ +++.+|..|+|||++|+..+....++.|+..|+++..+|
T Consensus       155 ~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  155 FGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             hCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            77777777777777 777777777777777777777766777777777777666

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4e-28  Score=159.10  Aligned_cols=129  Identities=33%  Similarity=0.479  Sum_probs=120.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||+|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||+|+|+..+
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            57899999999999999999999999 55778889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCC-CChhhHHHhhCCHHHHHHHHhcCCCCCcc
Q psy6445          81 KLDIAKILIESN-RCSLENKMK-KTPLHLAAQEGHVDMCKLLIKHQIDVNAQ  130 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~-~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  130 (134)
                      +.+++++|++.| +++..+..+ .||+++|+..++.+++++|+++|++++..
T Consensus       180 ~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            999999999999 777777766 47899999999999999999999999864

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.3e-28  Score=159.93  Aligned_cols=133  Identities=30%  Similarity=0.463  Sum_probs=90.9

Q ss_pred             CCCccHHHHHHHhC--CHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCC------CcH
Q psy6445           2 QVGSSPLHYAAKKN--KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG------SSP   72 (134)
Q Consensus         2 ~~g~~~l~~a~~~~--~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~t~   72 (134)
                      ..|.||||.|+..+  +.+++++|+++| +.+..+..|.||||+|+..|+.+++++|++.|++++..+..+      .||
T Consensus       139 ~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~  218 (480)
T PHA03100        139 SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETP  218 (480)
T ss_pred             CCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhH
Confidence            45666666666666  666666666666 334555566666666666666666666666666666655555      566


Q ss_pred             HHHHHHhCc--HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          73 LHYAAKKNK--LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        73 l~~a~~~~~--~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +|.|+..++  .+++++|++.| +++..+..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus       219 l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        219 LHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             HHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            666666666  67777777776 666677777788888888778888888888888777777655

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=159.29  Aligned_cols=83  Identities=24%  Similarity=0.455  Sum_probs=45.5

Q ss_pred             HHHHHhcCCCCCCCCCC-CCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          52 CKLLIKHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        52 ~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      +++|++.|++++..+.. |.||||+|+..++.+++++|++.| +++..+..|.||||+|+..++.+++++|++.|++++.
T Consensus       150 v~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~  229 (477)
T PHA02878        150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA  229 (477)
T ss_pred             HHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            33444444444444444 555555555555555555555555 5555555555555555555555555555555555555


Q ss_pred             ccccC
Q psy6445         130 QDIEA  134 (134)
Q Consensus       130 ~~~~g  134 (134)
                      +|..|
T Consensus       230 ~d~~g  234 (477)
T PHA02878        230 RDKCG  234 (477)
T ss_pred             CCCCC
Confidence            55443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-27  Score=156.76  Aligned_cols=130  Identities=30%  Similarity=0.417  Sum_probs=64.4

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCC--------------------
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI--------------------   60 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~--------------------   60 (134)
                      +.|.||||.|++.|+.+++++|++.| +.+..+..|.+||+.|+..|+.+++++|++.|.                    
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            34556666666666666666666655 223344444455555555555444444444332                    


Q ss_pred             ---CCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          61 ---DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        61 ---~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                         +++.++..|.||+|+|+..++.+++++|++.| +.+..+..|.||||+|+..++.+++++|++.|++++.+|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~  187 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD  187 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence               22233344445555555555555555554444 444444444455555544444455555554444444444

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.5e-27  Score=156.17  Aligned_cols=133  Identities=32%  Similarity=0.421  Sum_probs=113.1

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc------------------------ccccccCCCChhhHHHhhCCHHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR------------------------CSLENKMKKTPLHLAAQEGYVDMCKLLIK   57 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~   57 (134)
                      ..|.||||.|+..|+.+++++|++.|.                        .+..+..|.||||+|+..|+.+++++|++
T Consensus        66 ~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~  145 (434)
T PHA02874         66 TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE  145 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh
Confidence            467889999999999998888887762                        23456678899999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        58 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .|.+++.++..|.||+|+|+..++.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|++++.++..|
T Consensus       146 ~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g  223 (434)
T PHA02874        146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG  223 (434)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC
Confidence            99988888888999999999999999999999888 777788888999999999999999999999998888776654

>KOG0509|consensus

Probab=99.95  E-value=1.3e-27  Score=156.69  Aligned_cols=130  Identities=32%  Similarity=0.505  Sum_probs=123.4

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCc
Q psy6445           5 SSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAKKNK   81 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~   81 (134)
                      ...+..|+++|+++.|+.|++. + ..+..|++|.++||+|+.+++.+++++|+++|+++|+.+ ..+.||||||+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4567899999999999999998 6 567888999999999999999999999999999999988 568999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..+++.|+++| ++...|..|.+|+|.|++.++.-.+-||+.+|++++.+|.+|
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g  178 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG  178 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC
Confidence            99999999999 999999999999999999999999999999999999999987

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.8e-27  Score=139.94  Aligned_cols=131  Identities=26%  Similarity=0.305  Sum_probs=116.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhC--CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG--YVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAK   78 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~   78 (134)
                      +.+.+||+.|+..++.+.|+.|++..  +..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||+|+|+.
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~--n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV--NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh--hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            35789999999999999999999864  456788999999998754  8999999999999999987 479999999876


Q ss_pred             h---CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh--hCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 K---NKLDIAKILIESN-RCSLENKMKKTPLHLAAQ--EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~---~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~--~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .   ++.+++++|+++| +++..+..|.||||+|+.  .++.+++++|++.|++++.+|.+|
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g  158 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDN  158 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCC
Confidence            4   4799999999999 899999999999999876  468999999999999999998765

>PHA02741 hypothetical protein; Provisional

Probab=99.95  E-value=6.3e-27  Score=136.75  Aligned_cols=127  Identities=24%  Similarity=0.313  Sum_probs=113.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhh------C-cccccccCCCChhhHHHhhCC----HHHHHHHHhcCCCCCCCCC-C
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIES------N-RCSLENKMKKTPLHLAAQEGY----VDMCKLLIKHQIDVNAQDI-V   68 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~------~-~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~-~   68 (134)
                      |..|.||||.|++.|+.++++.|+..      + ..+.++..|.||||+|+..|+    .+++++|+..|.+++.++. .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            46799999999999999999998642      2 346788899999999999998    5899999999999999885 8


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          69 GSSPLHYAAKKNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        69 ~~t~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      |.||||+|+..++.+++++|+. .+ +....+..|.|||++|+..++.+++++|+++++..
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999997 47 88888999999999999999999999999886544

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=153.15  Aligned_cols=133  Identities=22%  Similarity=0.293  Sum_probs=96.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCC--HHHHHHHHhcCCCCCC-CCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGY--VDMCKLLIKHQIDVNA-QDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~~~~~~-~~~~~~t~l~~a   76 (134)
                      |.+|.||||+|+..|+.+++++|+++| +++.++..|.||||+|+..+.  .+++++|++.|++++. .+..|.||++ |
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-a  147 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-A  147 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-H
Confidence            578999999999999999999999999 557888999999999887654  6888889888888874 4666777775 4


Q ss_pred             HHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC--CHHHHHHHHhcCCCCCcccccC
Q psy6445          77 AKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG--HVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +..++.+++++|++.| +.+..+..|.||||+|+..+  +.+++++|++.|++++.+|..|
T Consensus       148 a~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G  208 (446)
T PHA02946        148 CTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDG  208 (446)
T ss_pred             HHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCC
Confidence            4556666666666666 55556666666666655433  2456666666666666655544

>KOG0510|consensus

Probab=99.95  E-value=2.7e-27  Score=158.80  Aligned_cols=134  Identities=28%  Similarity=0.438  Sum_probs=121.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHh-cC-CCCCCCCCCCCcHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIK-HQ-IDVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~-~~~~~~~~~~~t~l~~a~   77 (134)
                      |.+|.||||.|++.|..+++..|+..| +.+.+++++.||||.|+++|+..+++.|++ .+ ...+..|-.|.||+|.|+
T Consensus       270 d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             cccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence            789999999999999999999999999 568899999999999999999999999999 33 334566778999999999


Q ss_pred             HhCcHHHHHHHHhcCCCC----CCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          78 KKNKLDIAKILIESNRCS----LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        78 ~~~~~~~~~~Ll~~~~~~----~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..|+..+++.|+..|...    ..|.+|.||||.|+..|+..++++|+.+|+++..+|..|
T Consensus       350 ~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g  410 (929)
T KOG0510|consen  350 KSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKG  410 (929)
T ss_pred             hcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccc
Confidence            999999999999999322    348899999999999999999999999999998888765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.8e-27  Score=155.26  Aligned_cols=131  Identities=30%  Similarity=0.462  Sum_probs=74.7

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhH-----HHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHL-----AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHY   75 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~-----a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~   75 (134)
                      +.+.||||.|++.++.+++++|++.| +.+..+..+.+|+|+     |+..++.+++++|++.|++++..+..|.||+|+
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~  112 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY  112 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence            34556666666666666666666655 334444555555555     555555555555555555555555555555555


Q ss_pred             HH--HhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC--CHHHHHHHHhcCCCCCcccc
Q psy6445          76 AA--KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG--HVDMCKLLIKHQIDVNAQDI  132 (134)
Q Consensus        76 a~--~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~  132 (134)
                      |+  ..++.+++++|++.| +....+..|.||||+|+..+  +.+++++|+++|++++.+|.
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~  174 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR  174 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC
Confidence            55  555555555555555 44455555555555555555  55555555555555555544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=1.2e-26  Score=158.54  Aligned_cols=133  Identities=19%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CCCccHHHHHHHhCC--HHHHHHHHhhC-cccccccCCCChhhHH-----------------------------------
Q psy6445           2 QVGSSPLHYAAKKNK--LDIAKILIESN-RCSLENKMKKTPLHLA-----------------------------------   43 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~--~~~~~~ll~~~-~~~~~~~~~~~~l~~a-----------------------------------   43 (134)
                      ..|.||||.|+..|+  .+++++|++.| +.+.++..|.||||.|                                   
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            455566666665553  25566666655 3345555556665543                                   


Q ss_pred             --HhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh--------
Q psy6445          44 --AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK--KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ--------  110 (134)
Q Consensus        44 --~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~--------  110 (134)
                        +..|+.+++++|++.|++++.++..|+||||+|+.  .++.+++++|++.| +++.++..|.||||+|+.        
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence              22344555555555566555555556666665543  23455666666655 555555556666665543        


Q ss_pred             ------hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 ------EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ------~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                            .++.+++++|+++|++++.+|..|
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~kn~~G  399 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITAVNCLG  399 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCCcCCCC
Confidence                  145566666666666666555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.95  E-value=1.6e-26  Score=133.27  Aligned_cols=126  Identities=22%  Similarity=0.343  Sum_probs=107.8

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC---c-----ccccccCCCChhhHHHhhCCH---HHHHHHHhcCCCCCCCC-CC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN---R-----CSLENKMKKTPLHLAAQEGYV---DMCKLLIKHQIDVNAQD-IV   68 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~---~-----~~~~~~~~~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~~-~~   68 (134)
                      |++|.||||+|++.|+..  ..+...+   +     ....+..|.||||+|+..++.   +++++|+..|.+++.++ ..
T Consensus        14 d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~   91 (154)
T PHA02736         14 DIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVF   91 (154)
T ss_pred             CCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCC
Confidence            578999999999999843  2222221   1     134578899999999999986   56889999999999988 48


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhc-C-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          69 GSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        69 ~~t~l~~a~~~~~~~~~~~Ll~~-~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      |.||||+|+..++.+++++|+.. + +++..+..|.|||++|+..++.+++++|+++|++.+
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999974 6 888899999999999999999999999999998875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=4.9e-26  Score=159.23  Aligned_cols=130  Identities=32%  Similarity=0.475  Sum_probs=88.0

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcH-----------
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSP-----------   72 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~-----------   72 (134)
                      .++|+.|+..|+.++++.|++.| +.+..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||           
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            34455555555555555555554 334444555555555555555555555555555555555555555           


Q ss_pred             --------------------HHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          73 --------------------LHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        73 --------------------l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                                          +|.|+..++.++++.|+++| +++..+..|.||||+|+..|+.+++++|+++|++++..|
T Consensus       606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence                                55666666777777788888 888899999999999999999999999999999999888


Q ss_pred             ccC
Q psy6445         132 IEA  134 (134)
Q Consensus       132 ~~g  134 (134)
                      ..|
T Consensus       686 ~~g  688 (823)
T PLN03192        686 TDD  688 (823)
T ss_pred             CCC
Confidence            754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=4.6e-26  Score=155.78  Aligned_cols=134  Identities=22%  Similarity=0.273  Sum_probs=118.5

Q ss_pred             CCCCccHHHHHHHh--CCHHHHHHHHhhC-cccccccCCCChhhHHHhhCC--HHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy6445           1 RQVGSSPLHYAAKK--NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGY--VDMCKLLIKHQIDVNAQDIVGSSPLHY   75 (134)
Q Consensus         1 ~~~g~~~l~~a~~~--~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~t~l~~   75 (134)
                      |+.|.||||.|+..  ++.+++++|+++| +.+.++..|.||||+|+..|+  .+++++|++.|++++.++..|.||||.
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45799999998754  5789999999999 568889999999999999995  489999999999999999999999997


Q ss_pred             H-------------------------------------HHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh--hCCHH
Q psy6445          76 A-------------------------------------AKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ--EGHVD  115 (134)
Q Consensus        76 a-------------------------------------~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~--~~~~~  115 (134)
                      |                                     +..++.+++++|++.| +.+.++..|+||||+|+.  .++.+
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e  333 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD  333 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch
Confidence            5                                     3457788999999999 888899999999998764  46789


Q ss_pred             HHHHHHhcCCCCCcccccC
Q psy6445         116 MCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       116 ~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++++|++.|++++.+|..|
T Consensus       334 IVklLLe~GADIN~kD~~G  352 (764)
T PHA02716        334 IIKLLHEYGNDLNEPDNIG  352 (764)
T ss_pred             HHHHHHHcCCCCccCCCCC
Confidence            9999999999999998776

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=8.8e-26  Score=150.19  Aligned_cols=134  Identities=31%  Similarity=0.423  Sum_probs=115.1

Q ss_pred             CCCCccHHHHHHHhC---CHHHHHHHHhhC-cccccccCCCChhhHHHhhC-CHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy6445           1 RQVGSSPLHYAAKKN---KLDIAKILIESN-RCSLENKMKKTPLHLAAQEG-YVDMCKLLIKHQIDVNAQDIVGSSPLHY   75 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~---~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~t~l~~   75 (134)
                      |..|.||||.|+..+   +.++++.|++.| +.+.++..|.||||+|+..+ ..+++++|++.|++++..+..|.||+|+
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            457899999999988   999999999999 55778889999999999999 5899999999999999999999999999


Q ss_pred             HH--HhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC--CHHHHHHHHhcCCCCCcccccC
Q psy6445          76 AA--KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG--HVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        76 a~--~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+  ..++.+++++|++.| +++..+..|.|||++|+..+  ..+++++|++.|++++..|..|
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g  187 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF  187 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCC
Confidence            99  556788999999998 88888888999999887754  5788899999888887766544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.7e-25  Score=148.40  Aligned_cols=134  Identities=22%  Similarity=0.301  Sum_probs=87.5

Q ss_pred             CCCCccHHHHHHHhC---CHHHHHHHHhhC-cccccccCCCChhhHHHhhCC---HHHHHHHHhcCCCCCCCC-CCCCcH
Q psy6445           1 RQVGSSPLHYAAKKN---KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGY---VDMCKLLIKHQIDVNAQD-IVGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~---~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~t~   72 (134)
                      |..|.||||+|+..+   +.+++++|+++| +.+..+..|.||||+|+..++   .+++++|++.|++++..+ ..+.||
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            345666666666654   556666666666 345566666666666666665   666666666666666553 345566


Q ss_pred             HHHHHHhC----cHHHHHHHHhcC-CC---------------------------------------CCCCCCCCChhhHH
Q psy6445          73 LHYAAKKN----KLDIAKILIESN-RC---------------------------------------SLENKMKKTPLHLA  108 (134)
Q Consensus        73 l~~a~~~~----~~~~~~~Ll~~~-~~---------------------------------------~~~~~~~~t~l~~a  108 (134)
                      +|.+....    +.+++++|++.| +.                                       +.++..|.||||+|
T Consensus       186 Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A  265 (489)
T PHA02798        186 LHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYS  265 (489)
T ss_pred             HHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHH
Confidence            66655432    455566655554 11                                       22445678888888


Q ss_pred             HhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         109 AQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       109 ~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +..++.+++++|++.|++++.+|..|
T Consensus       266 ~~~~~~~~v~~LL~~GAdin~~d~~G  291 (489)
T PHA02798        266 VSHNNRKIFEYLLQLGGDINIITELG  291 (489)
T ss_pred             HHcCcHHHHHHHHHcCCcccccCCCC
Confidence            88888888888888888888887765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.5e-25  Score=148.02  Aligned_cols=134  Identities=18%  Similarity=0.295  Sum_probs=107.4

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhC-cc-cccccCCCChhhHHHhh--CCHHHHHHHHhcCCCCCC-CCCCCCcH
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESN-RC-SLENKMKKTPLHLAAQE--GYVDMCKLLIKHQIDVNA-QDIVGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~-~~-~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~-~~~~~~t~   72 (134)
                      |+.|.||||.|+..   ++.+++++|+++| +. ..++..|.||||+|+..  ++.+++++|++.|++++. .+..|.||
T Consensus       105 d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tp  184 (494)
T PHA02989        105 TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTP  184 (494)
T ss_pred             CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCCh
Confidence            46788999887765   5788999999988 44 56788889999888654  578899999999988887 56778899


Q ss_pred             HHHHHHhC----cHHHHHHHHhcC-CCC--------------------------------------CCCCCCCChhhHHH
Q psy6445          73 LHYAAKKN----KLDIAKILIESN-RCS--------------------------------------LENKMKKTPLHLAA  109 (134)
Q Consensus        73 l~~a~~~~----~~~~~~~Ll~~~-~~~--------------------------------------~~~~~~~t~l~~a~  109 (134)
                      +|+|+..+    +.+++++|++.| +.+                                      .++..|.||||+|+
T Consensus       185 L~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa  264 (494)
T PHA02989        185 MNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA  264 (494)
T ss_pred             HHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence            88887654    788888888877 332                                      23456889999999


Q ss_pred             hhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         110 QEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       110 ~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..++.+++++|++.|++++.+|..|
T Consensus       265 ~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        265 KVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             HhcCHHHHHHHHHcCCCccccCCCC
Confidence            9999999999999999999888766

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.9e-25  Score=152.52  Aligned_cols=133  Identities=29%  Similarity=0.390  Sum_probs=91.5

Q ss_pred             CCCccHHHHHHHhC-CHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKN-KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~-~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +.|.||||.|+..+ +.++++.|++.| +.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..
T Consensus       339 ~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~  418 (682)
T PHA02876        339 RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG  418 (682)
T ss_pred             cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHc
Confidence            34555555555532 455555555555 3455566667777777777777777777777777666666666777777655


Q ss_pred             Cc-HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC-CHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NK-LDIAKILIESN-RCSLENKMKKTPLHLAAQEG-HVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~-~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~-~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++ ..++++|++.| +++..+..|.||||+|+..+ +.+++++|++.|++++.+|..|
T Consensus       419 ~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g  476 (682)
T PHA02876        419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQN  476 (682)
T ss_pred             CCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            44 34567777777 77778888889999888766 5788899999999888888765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=6e-25  Score=146.24  Aligned_cols=132  Identities=25%  Similarity=0.376  Sum_probs=77.6

Q ss_pred             CCccHHHHHHHhC--CHHHHHHHHhhC-cccccccCCCChhhHHHhh--CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy6445           3 VGSSPLHYAAKKN--KLDIAKILIESN-RCSLENKMKKTPLHLAAQE--GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         3 ~g~~~l~~a~~~~--~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~   77 (134)
                      .|.||||.|+..+  +.++++.|++.| +....+..|.||||.++..  +..++++.|++.|++++.++..|.||+|+|+
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            3444444444433  334444444444 2222344455555554432  3445555555555555566666666666666


Q ss_pred             HhCcH--HHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          78 KKNKL--DIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        78 ~~~~~--~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..++.  .+++.|++.| +.+..+..|.||||+|+..|+.+++++|++.|++++.+|.+|
T Consensus       231 ~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            65543  4556666666 666777777777777777777777777777777777777655

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=141.23  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=116.8

Q ss_pred             CCCccHHHHHHH--hCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC------CCCCcHH
Q psy6445           2 QVGSSPLHYAAK--KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD------IVGSSPL   73 (134)
Q Consensus         2 ~~g~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~------~~~~t~l   73 (134)
                      +.+.|+||.++.  .++.+++++|+++|+.... .++.||+|.|+..++.+++++|+..|++.....      ..+.+++
T Consensus       114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            567999999999  8999999999999964222 455899999999999999999999997543222      3467899


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |.|...++.+++++|+++| +.+.++..|.|||++|+..|+.+++++|+++|++++.+|..|
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G  254 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG  254 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999999 899999999999999999999999999999999999999876

>KOG0508|consensus

Probab=99.93  E-value=1.6e-25  Score=143.18  Aligned_cols=127  Identities=28%  Similarity=0.463  Sum_probs=113.8

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCcc-cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      +|-+||..|+-.|++++|+.|++.++. +.....+.|||..||.-|+.+++++|+++|++++..++.|.|+|++|+..|+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            578899999999999999999999954 5555566799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      .+++++|++.| +.+.++..|+|+||.++..|+.+++++|+.+|+-++.
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence            99999999999 8888999999999999999999999999999887654

>KOG0502|consensus

Probab=99.93  E-value=5.8e-26  Score=132.81  Aligned_cols=122  Identities=28%  Similarity=0.466  Sum_probs=68.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |++|.|||.+|+.+|+++.|++|++.|+ +....+...++|.+|+..|..++|++|+..+.++|..|.+|.|||.+|++.
T Consensus       157 De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  157 DEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             cccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecC
Confidence            4555555555555555555555555552 233444445555555555555555555555555555555555555555555


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      ++..|++-|+..| +....+..|.++++.|+..|+. +++..++.
T Consensus       237 nhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  237 NHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             ChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            5555555555555 5555555555555555555554 44444433

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=2e-24  Score=142.38  Aligned_cols=132  Identities=18%  Similarity=0.264  Sum_probs=105.1

Q ss_pred             CCCCccHHHHHHHhC--CHHHHHHHHhhCcc-c-ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKKN--KLDIAKILIESNRC-S-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~--~~~~~~~ll~~~~~-~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      |+.|.||||+|+..+  ..+++++|+++|.. + ..+..|.|||+ |+..++.+++++|++.|.+++..+..|.||+|.|
T Consensus       102 d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A  180 (446)
T PHA02946        102 DKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRH  180 (446)
T ss_pred             CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHH
Confidence            578899999988766  47888999998843 3 35778888887 5566788888888888888888888888888888


Q ss_pred             HHhCc--HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC--CHHHHHHHHhcCCCCCcccccC
Q psy6445          77 AKKNK--LDIAKILIESN-RCSLENKMKKTPLHLAAQEG--HVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        77 ~~~~~--~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +..++  .+++++|++.| +++..+..|.||||+|+..+  +.+++++|+. |++++.+|..|
T Consensus       181 ~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G  242 (446)
T PHA02946        181 LMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFG  242 (446)
T ss_pred             HHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence            76544  57888888888 77788888888888888765  6788888874 78888888765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=140.37  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=115.8

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCc-c-ccc-----ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNR-C-SLE-----NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHY   75 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~-~-~~~-----~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~   75 (134)
                      ++.||+|.|+..++.+++++|+++|. . +..     +..+.+++|.+...+..+++++|+..|++++.++..|.||||+
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~  227 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYR  227 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHH
Confidence            56899999999999999999999994 2 111     1246788999999999999999999999999999999999999


Q ss_pred             HHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCC--------HHHHHHHHhcCCCCCccc
Q psy6445          76 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGH--------VDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        76 a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~--------~~~~~~L~~~g~~~~~~~  131 (134)
                      |+..++.+++++|++.| +++..+..|.||||+|+..|+        .+++++|+++|++++...
T Consensus       228 Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        228 AIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999999999999999 899999999999999999884        699999999999887543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.9e-24  Score=148.27  Aligned_cols=127  Identities=31%  Similarity=0.405  Sum_probs=59.6

Q ss_pred             CCccHHHHHHHhCCH-HHHHHHHhhC-cccccccCCCChhhHHHhhC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           3 VGSSPLHYAAKKNKL-DIAKILIESN-RCSLENKMKKTPLHLAAQEG-YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~-~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      .|.||||.|+..++. ++++.|++.| +.+..+..|.||||+|+..| ..+++++|+..|.+++..+..|.||+|+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            455555555555554 2445555554 23444445555555555544 24444444444444444444444444444442


Q ss_pred             C-cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          80 N-KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        80 ~-~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      + ..+++++|++.| +++.++..|.||||+|+..++.+++++|+++|++++.
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc
Confidence            2 334444444444 4444444444444444444444444444444444443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.3e-24  Score=133.33  Aligned_cols=120  Identities=21%  Similarity=0.200  Sum_probs=102.8

Q ss_pred             CCCCcc-HHHHHHHhCCHHHHHHHHhhCc-cccc----ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC-CCCCCcHH
Q psy6445           1 RQVGSS-PLHYAAKKNKLDIAKILIESNR-CSLE----NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ-DIVGSSPL   73 (134)
Q Consensus         1 ~~~g~~-~l~~a~~~~~~~~~~~ll~~~~-~~~~----~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~l   73 (134)
                      |++|.+ +|+.|++.++.+++++|+++|+ .+..    +..|.||||+|+..++.+++++|+++|++++.. +..|.||+
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            455665 4577777789999999999994 4444    468999999999999999999999999999986 46799999


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHH
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL  120 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L  120 (134)
                      |.|+..++.+++++|++.| +++..+..|.||+++|+..++.+++..+
T Consensus       109 h~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence            9999999999999999999 8888999999999999987655554443

>KOG0508|consensus

Probab=99.93  E-value=2.5e-25  Score=142.30  Aligned_cols=133  Identities=31%  Similarity=0.457  Sum_probs=121.6

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-ccc---------ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCS---------LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS   71 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~---------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t   71 (134)
                      .+|.|||.+|+++|+.++|++|+++. ...         -....|-+||-.|+..|+.++|+.|+..|+++|.....+.|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            57889999999999999999999954 211         12345788999999999999999999999999998888999


Q ss_pred             HHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          72 PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        72 ~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ||-.||.-|+.+++++|++++ ++.+.|.+|.|.|++|+..|+.+++++|++.|+|++.++..|
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kG  183 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKG  183 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccC
Confidence            999999999999999999999 999999999999999999999999999999999999998876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.1e-24  Score=146.60  Aligned_cols=134  Identities=24%  Similarity=0.274  Sum_probs=105.8

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhC-cccccccCCCChhhHHHhhC-----------------------------
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG-----------------------------   47 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~-----------------------------   47 (134)
                      |++|.||||.|+..   |+.+++++|++.| +.+.++..|.||||.|+..|                             
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~  108 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY  108 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence            56889999997655   7799999999988 45677788888888776543                             


Q ss_pred             ------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHH--HhCcHHHHHHHHhcC-CCCCCCC---CC-----------CCh
Q psy6445          48 ------YVDMCKLLIKHQIDVNAQDIVGSSPLHYAA--KKNKLDIAKILIESN-RCSLENK---MK-----------KTP  104 (134)
Q Consensus        48 ------~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~~-~~~~~~~---~~-----------~t~  104 (134)
                            +.+++++|++.|++++..+..|.|||+.|+  ..++.+++++|+++| +++..+.   .|           .||
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccH
Confidence                  457788888888899988889999998543  568999999999998 6554332   23           599


Q ss_pred             hhHHHh-----------hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         105 LHLAAQ-----------EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       105 l~~a~~-----------~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ||+|+.           .++.+++++|++.|++++.+|..|
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G  229 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNY  229 (661)
T ss_pred             HHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCC
Confidence            999875           357899999999999999988766

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=143.24  Aligned_cols=132  Identities=27%  Similarity=0.330  Sum_probs=95.4

Q ss_pred             CCCCccHHHHHHHh-----CCHHHHHHHHhhC-cccccccCCCChhhHHHhhC---CHHHHHHHHhcCCCCCCCCCCCCc
Q psy6445           1 RQVGSSPLHYAAKK-----NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG---YVDMCKLLIKHQIDVNAQDIVGSS   71 (134)
Q Consensus         1 ~~~g~~~l~~a~~~-----~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~~t   71 (134)
                      |..|.||||.|+..     +..+++++|+++| +.+.++..|.||||+|+..+   +.+++++|++.|++++..+..|.|
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~t  147 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFT  147 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCc
Confidence            45677888777653     5577888888877 45677777888888877764   567888888888888777777888


Q ss_pred             HHHHHHHhCc---HHHHHHHHhcC-CCCCC-CCCCCChhhHHHhh----CCHHHHHHHHhcCCCCCcccc
Q psy6445          72 PLHYAAKKNK---LDIAKILIESN-RCSLE-NKMKKTPLHLAAQE----GHVDMCKLLIKHQIDVNAQDI  132 (134)
Q Consensus        72 ~l~~a~~~~~---~~~~~~Ll~~~-~~~~~-~~~~~t~l~~a~~~----~~~~~~~~L~~~g~~~~~~~~  132 (134)
                      |+|+|+..++   .+++++|++.| +++.. +..+.||+|.++..    ++.+++++|+++|++++..+.
T Consensus       148 pL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        148 MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            8888887776   77788888777 55554 34567787776553    367788888888777766543

>KOG0502|consensus

Probab=99.92  E-value=1.1e-24  Score=127.49  Aligned_cols=131  Identities=24%  Similarity=0.353  Sum_probs=119.2

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~   82 (134)
                      .+++|+.+++-+-++..+..+.+ ...+..|+.|.|||.+|+.+|++.+|++|++.|++++...++..++|..|++.|..
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~~-n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLVN-NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYT  206 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHhh-ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChH
Confidence            57888899888887776554443 34567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          83 DIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        83 ~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +++++|+.++ +.+..+.+|.|||-+|++.++..|++.|+..|++++..+..|
T Consensus       207 diV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsG  259 (296)
T KOG0502|consen  207 DIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSG  259 (296)
T ss_pred             HHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccC
Confidence            9999999999 999999999999999999999999999999999999888766

>KOG0510|consensus

Probab=99.92  E-value=4.3e-24  Score=143.71  Aligned_cols=128  Identities=27%  Similarity=0.401  Sum_probs=116.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcc---c-------------ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRC---S-------------LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA   64 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~-------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   64 (134)
                      |..|.+|||.|+..|++++++.+++.++.   .             ..|.+|+||||+|+..|+++.++.|+..|++++.
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~  301 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS  301 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence            45688999999999999999999987721   1             2477899999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHh-cC--CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          65 QDIVGSSPLHYAAKKNKLDIAKILIE-SN--RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        65 ~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      ++..+.||+|.|+++|++.+++.|++ .+  ..+..+..|.||||.|+.+|+..+++.|+++|+...
T Consensus       302 kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  302 KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            99999999999999999999999998 44  456678889999999999999999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.8e-23  Score=138.33  Aligned_cols=128  Identities=20%  Similarity=0.289  Sum_probs=69.8

Q ss_pred             CccHHHHHHHhC------CHHHHHHHHhhC-cccccccCCCChhhHHHhh---CCHHHHHHHHhcCCCC-CCCCCCCCcH
Q psy6445           4 GSSPLHYAAKKN------KLDIAKILIESN-RCSLENKMKKTPLHLAAQE---GYVDMCKLLIKHQIDV-NAQDIVGSSP   72 (134)
Q Consensus         4 g~~~l~~a~~~~------~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~-~~~~~~~~t~   72 (134)
                      +.||||.|+..+      ..+++++|+++| +.+.++..|.||||.|+..   ++.+++++|++.|+++ +..+..|.||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            455666555433      244556666655 3355555566666555433   3456666666666665 4555556666


Q ss_pred             HHHHHHh--CcHHHHHHHHhcC-CCCC-CCCCCCChhhHHHhh----CCHHHHHHHHhcCCCCCccc
Q psy6445          73 LHYAAKK--NKLDIAKILIESN-RCSL-ENKMKKTPLHLAAQE----GHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        73 l~~a~~~--~~~~~~~~Ll~~~-~~~~-~~~~~~t~l~~a~~~----~~~~~~~~L~~~g~~~~~~~  131 (134)
                      ||+|+..  ++.+++++|++.| ++.. .+..+.||+++|++.    ++.+++++|++.|++++.+|
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            6655433  3555666666665 4433 344555666655443    25566666666666655544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.91  E-value=1.1e-22  Score=113.09  Aligned_cols=121  Identities=40%  Similarity=0.714  Sum_probs=112.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcc-cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|++.++.+++++|++.+.. ...+..|.+|++.|+..++.+++++++..+..++..+..+.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            46799999999999999999999999965 78888999999999999999999999999988888888999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHH
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI  121 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  121 (134)
                      ++.+++++|++.+ .....+..+.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999998 77778888999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514|consensus

Probab=99.91  E-value=5.3e-24  Score=132.43  Aligned_cols=134  Identities=25%  Similarity=0.399  Sum_probs=107.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhC-----CHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEG-----YVDMCKLLIKHQIDVNAQDIVGSSPL   73 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~-----~~~~~~~l~~~~~~~~~~~~~~~t~l   73 (134)
                      |.+|.|+||+++.++++++|+.|++.+  +.+..+..|.||+.+++...     ..++|+.|...|..--.....|+|+|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTAL  344 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhh
Confidence            678999999999999999999999998  55777888888887765422     25677777777643223345688888


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh-cCCCCCcccccC
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK-HQIDVNAQDIEA  134 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g  134 (134)
                      +.|+.+|+.++++.||..| +.++.|.+|.|+|++|+.+|+.|++++|+. .+.|+...|.+|
T Consensus       345 MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC
Confidence            8888888888888888888 888888888888888888888888888884 478888877765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.90  E-value=9.5e-23  Score=107.49  Aligned_cols=88  Identities=40%  Similarity=0.716  Sum_probs=44.2

Q ss_pred             hhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHH
Q psy6445          40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK  118 (134)
Q Consensus        40 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~  118 (134)
                      ||+|+..|+.+++++|++.+.+++.    |.||+|+|+..++.+++++|++.| +++..+..|.|||++|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            3445555555555555554444333    444555555555555555555555 44444455555555555555555555


Q ss_pred             HHHhcCCCCCccc
Q psy6445         119 LLIKHQIDVNAQD  131 (134)
Q Consensus       119 ~L~~~g~~~~~~~  131 (134)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            5555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177|consensus

Probab=99.90  E-value=3.6e-23  Score=145.04  Aligned_cols=96  Identities=38%  Similarity=0.542  Sum_probs=62.7

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHH
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA  109 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~  109 (134)
                      .++..|.||||.|+.+|+..+|++|+++|++.+.++..|+||||.|+.+|+.+|+++|+++| +++..+..+.|||++|+
T Consensus       535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  535 LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             hhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666 56666666666666666


Q ss_pred             hhCCHHHHHHHHhcCCC
Q psy6445         110 QEGHVDMCKLLIKHQID  126 (134)
Q Consensus       110 ~~~~~~~~~~L~~~g~~  126 (134)
                      ..|+.++++.|+..+..
T Consensus       615 ~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  615 RLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HhcccchhhHHHhccCc
Confidence            66666666666666655

>KOG4177|consensus

Probab=99.89  E-value=8e-23  Score=143.31  Aligned_cols=133  Identities=38%  Similarity=0.631  Sum_probs=126.2

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      +.|.||||+|++.|+.+.++.+++.+. .+.....+.+++|.+...+....+..++..|+..+.++..+.||||.|+.+|
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcC
Confidence            579999999999999999999999884 4667789999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+++++|+++| +...++..|+||||.|+..|+.+|+++|+++|+++|..|.+|
T Consensus       552 ~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  552 NVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             CchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence            999999999999 888999999999999999999999999999999999998775

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.7e-22  Score=134.41  Aligned_cols=127  Identities=17%  Similarity=0.255  Sum_probs=108.2

Q ss_pred             CCCccHHHHHHHhCC----HHHHHHHHhhCc---ccccccCCCChhhH---HHhhC---------CHHHHHHHHhcCCCC
Q psy6445           2 QVGSSPLHYAAKKNK----LDIAKILIESNR---CSLENKMKKTPLHL---AAQEG---------YVDMCKLLIKHQIDV   62 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~----~~~~~~ll~~~~---~~~~~~~~~~~l~~---a~~~~---------~~~~~~~l~~~~~~~   62 (134)
                      ..|.||||.|+..++    .+++++|+++|.   .+.++..|.||||.   +...+         ..+++++|+.+|+++
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI  455 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI  455 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch
Confidence            468999999998885    899999999984   57778899999984   33222         235799999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCC-CCCChhhHHHhh--CCHHHHHHHHhcCCCCC
Q psy6445          63 NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENK-MKKTPLHLAAQE--GHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        63 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~-~~~t~l~~a~~~--~~~~~~~~L~~~g~~~~  128 (134)
                      +.+|..|.||||+|+..++.+++++|+++| +++..+. .+.||+++|+..  ++.+++++|+++|++++
T Consensus       456 NakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        456 DMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             hccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            999999999999999999999999999999 7878886 589999999874  78999999999998874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.6e-22  Score=134.45  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=110.9

Q ss_pred             CCCCccHHHHHHHhC---CHHHHHHHHhhC-cccccccCCCChhhHHHhhC--CHHHHHHHHhcCCCC--CCCCCCCCcH
Q psy6445           1 RQVGSSPLHYAAKKN---KLDIAKILIESN-RCSLENKMKKTPLHLAAQEG--YVDMCKLLIKHQIDV--NAQDIVGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~---~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~--~~~~~~~~t~   72 (134)
                      |++|.||||+|+..+   +.+++++|+++| +.+.+|..|.||||+|+..+  +.+++++|++.|+..  +..+..+.+|
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            578999999999997   599999999999 56889999999999999866  799999999996644  6667778899


Q ss_pred             HHHHHH--hCcHHHHHHHHh-cC-CCCCCC-----CCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          73 LHYAAK--KNKLDIAKILIE-SN-RCSLEN-----KMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        73 l~~a~~--~~~~~~~~~Ll~-~~-~~~~~~-----~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      ++.++.  .++.+++++|++ .+ +++...     ..+.+|++++...++.+++++|+++|++++
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            999998  889999999997 44 544332     368899999999999999999999999984

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.89  E-value=8.1e-22  Score=103.92  Aligned_cols=87  Identities=38%  Similarity=0.612  Sum_probs=77.8

Q ss_pred             HHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHH
Q psy6445           8 LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKI   87 (134)
Q Consensus         8 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   87 (134)
                      ||+|++.++.+++++|++.+.....   |.+|||+|+..|+.+++++|++.|.+++.++..|.||+|+|+..++.+++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~   77 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL---GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKL   77 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS---SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC---CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            7999999999999999998743222   8899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC-CCCCC
Q psy6445          88 LIESN-RCSLE   97 (134)
Q Consensus        88 Ll~~~-~~~~~   97 (134)
                      |+++| +++.+
T Consensus        78 Ll~~g~~~~~~   88 (89)
T PF12796_consen   78 LLEHGADVNIR   88 (89)
T ss_dssp             HHHTTT-TTSS
T ss_pred             HHHcCCCCCCc
Confidence            99998 66554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=3.1e-21  Score=112.42  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             CCCCccHHHHHHHhCCHHH---HHHHHhhC-cccccc-cCCCChhhHHHhhCCHHHHHHHHh-cCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDI---AKILIESN-RCSLEN-KMKKTPLHLAAQEGYVDMCKLLIK-HQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~---~~~ll~~~-~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~   74 (134)
                      |+.|.||||+|+..++.+.   +++|++.| +.+.++ ..|.||||+|+..++.+++++|+. .+.+++.++..|.||+|
T Consensus        54 d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~  133 (166)
T PHA02743         54 DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYH  133 (166)
T ss_pred             CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHH
Confidence            5789999999999998654   78999999 456676 589999999999999999999995 79999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcC-CCCCCCCCCC
Q psy6445          75 YAAKKNKLDIAKILIESN-RCSLENKMKK  102 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~  102 (134)
                      +|+..++.+++++|++++ +.+.++..|.
T Consensus       134 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        134 IAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            999999999999999999 6666665553

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=3.8e-21  Score=131.65  Aligned_cols=121  Identities=23%  Similarity=0.289  Sum_probs=100.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHH--HhhCCHHHHHHHHhcCCCCCCCCC---CC-----------
Q psy6445           7 PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLA--AQEGYVDMCKLLIKHQIDVNAQDI---VG-----------   69 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a--~~~~~~~~~~~l~~~~~~~~~~~~---~~-----------   69 (134)
                      +++.|+..++.+++++|+++| +.+.++..|.||||.+  +..|+.+++++|++.|++++..+.   .|           
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence            344555556778888888888 5577889999999965  357899999999999999876542   23           


Q ss_pred             CcHHHHHHH-----------hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCH--HHHHHHHhcCCCCC
Q psy6445          70 SSPLHYAAK-----------KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHV--DMCKLLIKHQIDVN  128 (134)
Q Consensus        70 ~t~l~~a~~-----------~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~--~~~~~L~~~g~~~~  128 (134)
                      .||+|+|+.           .++.+++++|++.| +++..+..|.||||+|+..++.  +++++|++ |+++.
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence            599999986           46899999999999 8999999999999999999985  79999975 88764

>KOG0505|consensus

Probab=99.87  E-value=1.8e-21  Score=125.91  Aligned_cols=134  Identities=31%  Similarity=0.510  Sum_probs=120.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCC----------------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN----------------   63 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~----------------   63 (134)
                      +-+|.|+||.+|.-.+.+||++|++.+ .++..|..++||+|.|+..|+..+++++++.|+++.                
T Consensus        70 n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e  149 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE  149 (527)
T ss_pred             CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc
Confidence            358999999999999999999999999 468899999999999999999999999999875432                


Q ss_pred             -------------------------------------------CCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCC
Q psy6445          64 -------------------------------------------AQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENK   99 (134)
Q Consensus        64 -------------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~   99 (134)
                                                                 .....|.|.+|.|...|-.++.++|++.+ +....|.
T Consensus       150 a~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  150 ATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             chhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence                                                       11234779999999999999999999999 9999999


Q ss_pred             CCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       100 ~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .|+||||.|+..+..++.++|+++|++++.+...|
T Consensus       230 dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMG  264 (527)
T ss_pred             cCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcC
Confidence            99999999999999999999999999999887654

>KOG0512|consensus

Probab=99.87  E-value=5.3e-21  Score=108.41  Aligned_cols=127  Identities=30%  Similarity=0.390  Sum_probs=104.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           6 SPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         6 ~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      -.+.+|+..+.+..|+.|++..+  .+.+|.+|.||||-|+-+|+.++++.|+..|++++.+...|+||||.||.-.+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            34678899999999999998773  4888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCCCCChhhHHHhhCCH-HHHHHHH-hcCCCCCcccc
Q psy6445          84 IAKILIESN-RCSLENKMKKTPLHLAAQEGHV-DMCKLLI-KHQIDVNAQDI  132 (134)
Q Consensus        84 ~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~-~~~~~L~-~~g~~~~~~~~  132 (134)
                      ++.+|+++| +++.......||||+|+...+. .-+++|+ ..+++.-.++.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn  196 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN  196 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC
Confidence            999999999 8888888889999998776544 4455555 44555555443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=118.10  Aligned_cols=106  Identities=25%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             ccccccCCCCh-hhHHHhhCCHHHHHHHHhcCCCCCCCC----CCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCC-CCCC
Q psy6445          29 CSLENKMKKTP-LHLAAQEGYVDMCKLLIKHQIDVNAQD----IVGSSPLHYAAKKNKLDIAKILIESN-RCSLE-NKMK  101 (134)
Q Consensus        29 ~~~~~~~~~~~-l~~a~~~~~~~~~~~l~~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~-~~~~  101 (134)
                      ...+|..+.++ |+.|+..|+.+++++|++.|++++.++    ..|.||+|+|+..++.+++++|+++| +++.. +..+
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            44567777665 777788899999999999999999874    58999999999999999999999999 77764 4579


Q ss_pred             CChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       102 ~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .||||+|+..++.+++++|+..|++++.+|..|
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G  137 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDM  137 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            999999999999999999999999999998776

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1e-20  Score=110.64  Aligned_cols=104  Identities=27%  Similarity=0.301  Sum_probs=92.3

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhc------CCCCCCCCCCCCcHHHHHHHhCc----HHHHHHHHhcC-CCCCCCC
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKH------QIDVNAQDIVGSSPLHYAAKKNK----LDIAKILIESN-RCSLENK   99 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~------~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~-~~~~~~~   99 (134)
                      .++..|.++||+|+..|+.++++.++..      +..++.++..|.||||+|+..++    .+++++|++.| +.+.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            4567899999999999999999998642      57788899999999999999998    58899999999 7777774


Q ss_pred             -CCCChhhHHHhhCCHHHHHHHHh-cCCCCCcccccC
Q psy6445         100 -MKKTPLHLAAQEGHVDMCKLLIK-HQIDVNAQDIEA  134 (134)
Q Consensus       100 -~~~t~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g  134 (134)
                       .|.||||+|+..++.+++++|+. .|++++.+|..|
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  132 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADN  132 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence             89999999999999999999997 599999988765

>KOG0195|consensus

Probab=99.86  E-value=4.7e-22  Score=121.11  Aligned_cols=110  Identities=37%  Similarity=0.495  Sum_probs=68.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.+|||+|++.|+..+++.|+..|+ .+..+-...+|||+|+.+|+.++|+.|+++.++++..+..|.||||+||.-
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfw  110 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFW  110 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhh
Confidence            3456666666666666666666666663 344444455666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      |...+++-|+..| ..++.++.|.||++.|..
T Consensus       111 gydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  111 GYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             cHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            6666666666666 555666666666666543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=1.9e-20  Score=131.46  Aligned_cols=111  Identities=24%  Similarity=0.356  Sum_probs=95.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHH-------------------------------HhhCC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLA-------------------------------AQEGY   48 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a-------------------------------~~~~~   48 (134)
                      |..|.||||.|+..|+.++++.|+++| +.+.+|..|.||||.|                               +..|+
T Consensus       555 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~  634 (823)
T PLN03192        555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRND  634 (823)
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCC
Confidence            678999999999999999999999998 5577888889988755                               45555


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCC-CChhhHHHhh
Q psy6445          49 VDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK-KTPLHLAAQE  111 (134)
Q Consensus        49 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~-~t~l~~a~~~  111 (134)
                      .+++++|+++|++++.+|..|.||+|+|+..|+.+++++|++.| +.+..+..+ .+|..++...
T Consensus       635 ~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        635 LTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            66677788889999999999999999999999999999999999 888888877 8888877543

>KOG0195|consensus

Probab=99.85  E-value=9.7e-21  Score=115.45  Aligned_cols=124  Identities=24%  Similarity=0.350  Sum_probs=110.9

Q ss_pred             HHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHH
Q psy6445          11 AAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL   88 (134)
Q Consensus        11 a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   88 (134)
                      -|+.|+.-.|+.-++..  +.+.-|..|.+|||+|++.|+..+++.|+..|+.++..+....||||.|+.+|+.++++.|
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHH
Confidence            35666666666555544  4577788999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          89 IESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        89 l~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+. +.+..+.+|.||||||+..|+..+.+-|+..|+-++.-|..|
T Consensus        87 l~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g  133 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKG  133 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCC
Confidence            9887 899999999999999999999999999999999998877765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=2.8e-20  Score=129.69  Aligned_cols=131  Identities=23%  Similarity=0.303  Sum_probs=93.0

Q ss_pred             CCCCccHHH-HHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCC---HHHHHHHHhcCCC------CC----CCC
Q psy6445           1 RQVGSSPLH-YAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGY---VDMCKLLIKHQID------VN----AQD   66 (134)
Q Consensus         1 ~~~g~~~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~------~~----~~~   66 (134)
                      |..|.|||| .|+..++.++++.|++.+.   .+..|.||||.|+..+.   ..++..+...+..      .+    ...
T Consensus        49 d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~  125 (743)
T TIGR00870        49 DRLGRSALFVAAIENENLELTELLLNLSC---RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF  125 (743)
T ss_pred             CccchhHHHHHHHhcChHHHHHHHHhCCC---CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccccc
Confidence            456777887 7777777777777777765   45667777777765221   1222333322211      00    112


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCC--------------CCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          67 IVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN--------------KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        67 ~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      ..|.||||+|+..++.+++++|+++| +++.+.              ..|.|||+.|+..++.+++++|+++|++++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            45889999999999999999999998 555332              357899999999999999999999999998888


Q ss_pred             ccC
Q psy6445         132 IEA  134 (134)
Q Consensus       132 ~~g  134 (134)
                      ..|
T Consensus       206 ~~g  208 (743)
T TIGR00870       206 SLG  208 (743)
T ss_pred             hhh
Confidence            765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.84  E-value=4e-20  Score=115.39  Aligned_cols=123  Identities=30%  Similarity=0.403  Sum_probs=113.2

Q ss_pred             CCCCccHHHHHHHhC-----CHHHHHHHHhhCcccccc-cCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKN-----KLDIAKILIESNRCSLEN-KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~-----~~~~~~~ll~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      ++-|.||+++++...     +..+|..|+..|+.+.+. ..|+|+|.+|+.+|+.++|+.|+..|+++|.+|..|.|+|+
T Consensus       299 NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALM  378 (452)
T KOG0514|consen  299 NRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALM  378 (452)
T ss_pred             ccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHh
Confidence            467999999998654     888999999999887664 68999999999999999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          75 YAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      .|+.+|+.+++++||...  +....|.+|.|+|.+|...|+.++.-+|..+
T Consensus       379 CA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  379 CAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999877  7888999999999999999999999988754

>KOG0512|consensus

Probab=99.84  E-value=2.8e-20  Score=105.51  Aligned_cols=112  Identities=29%  Similarity=0.355  Sum_probs=99.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |++|.||||-|+.+|++++++.|+..| +...+...|+||||.||.-.+.+++.+|+++|+++++......||||.|+..
T Consensus        94 D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~  173 (228)
T KOG0512|consen   94 DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGN  173 (228)
T ss_pred             ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcc
Confidence            789999999999999999999999999 5578889999999999999999999999999999999999999999999987


Q ss_pred             CcHH-HHHHHHhc-C-CCCCCCCCCCChhhHHHhhC
Q psy6445          80 NKLD-IAKILIES-N-RCSLENKMKKTPLHLAAQEG  112 (134)
Q Consensus        80 ~~~~-~~~~Ll~~-~-~~~~~~~~~~t~l~~a~~~~  112 (134)
                      .+.. .+++|+.. + .+...+..+.||+++|.+.+
T Consensus       174 rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  174 RNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            7654 56666543 3 67778888999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=2.4e-20  Score=130.06  Aligned_cols=123  Identities=26%  Similarity=0.378  Sum_probs=105.3

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc-cccc--------------ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR-CSLE--------------NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD   66 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~--------------~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   66 (134)
                      ..|.||||.|+.+++.++++.|+++|+ .+.+              ...|.+||+.|+..|+.+++++|++.|++++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            359999999999999999999999984 3322              1358899999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhC---------cHHHHHHHHhcC-C---C----CCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          67 IVGSSPLHYAAKKN---------KLDIAKILIESN-R---C----SLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        67 ~~~~t~l~~a~~~~---------~~~~~~~Ll~~~-~---~----~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      ..|.||+|+|+..+         ...+.+++++.+ .   .    ...|..|.||+++|+..|+.+++++|++.+
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            99999999999986         334666676655 2   2    567889999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.84  E-value=2.1e-20  Score=125.44  Aligned_cols=126  Identities=29%  Similarity=0.432  Sum_probs=118.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |.+|.|+||-|+.+|+.++++.|++..+ ...++..|..|||+|++.|+.+.++.++..+...+..+.+|.||+|.|++.
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            5689999999999999999999999884 466779999999999999999999999999988899999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      ++.+++.+|+.++ +..+++..+.|+++.|++.|..++++.|++....
T Consensus       126 gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~  173 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFP  173 (854)
T ss_pred             cchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccc
Confidence            9999999999999 9999999999999999999999999999987433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=106.70  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=83.7

Q ss_pred             CCCCccHHHHHHHhCCHH---HHHHHHhhC-cccccc-cCCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLD---IAKILIESN-RCSLEN-KMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~---~~~~ll~~~-~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~   74 (134)
                      |+.|.||||+|+..++.+   ++++|++.| +.+.++ ..|.||||+|+..++.+++++|+.. +.+++..+..|.||+|
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            568999999999999874   688999999 456666 5899999999999999999999984 8999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcC
Q psy6445          75 YAAKKNKLDIAKILIESN   92 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~   92 (134)
                      +|+..++.+++++|++.|
T Consensus       132 ~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736        132 VACERHDAKMMNILRAKG  149 (154)
T ss_pred             HHHHcCCHHHHHHHHHcC
Confidence            999999999999999988

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=5.3e-19  Score=118.92  Aligned_cols=125  Identities=12%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCc-ccccccCC--CChhhHHHhhCCH---HHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK--KTPLHLAAQEGYV---DMCKLLIKHQIDVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~--~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~~~~~~t~l~~a~   77 (134)
                      ..++++.|+..++.+++++|+++|+ .+.++..|  .+|||+|......   +++++++.+|++++.++..|.||||+|+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa  418 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI  418 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH
Confidence            4567889999999999999999994 46666654  6889987766654   4678889999999999999999999999


Q ss_pred             HhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh---h-------CCHHHHHHHHhcCCCCC
Q psy6445          78 KKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ---E-------GHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        78 ~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~---~-------~~~~~~~~L~~~g~~~~  128 (134)
                      ..++.+++++|+++| +.+..+..|.||+++|+.   .       ...++++.|+++|.+++
T Consensus       419 ~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        419 ESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999 888899999999999865   2       23567888888887764

>KOG4214|consensus

Probab=99.81  E-value=3.9e-19  Score=90.90  Aligned_cols=105  Identities=21%  Similarity=0.294  Sum_probs=91.5

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      |.--+.+++++|.++-|+..+..+-.......|++|||+|+-+|+.+++++|+..|++++.+|..|.|||..|++-|+.+
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            44567899999999999999998843344568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCCCCChhhHH
Q psy6445          84 IAKILIESN-RCSLENKMKKTPLHLA  108 (134)
Q Consensus        84 ~~~~Ll~~~-~~~~~~~~~~t~l~~a  108 (134)
                      |+++|++.| +...+.-.|.+.+..+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999 7777666676655444

>KOG3676|consensus

Probab=99.80  E-value=1.5e-18  Score=117.35  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=111.6

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCcc-cc--------------c---------ccCCCChhhHHHhhCCHHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNRC-SL--------------E---------NKMKKTPLHLAAQEGYVDMCKLLIK   57 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~--------------~---------~~~~~~~l~~a~~~~~~~~~~~l~~   57 (134)
                      ..|.||||+|+-+.+.++|+.|++.|+. +.              .         -+.|..||.+|+..++++++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            4699999999999999999999998743 21              1         2357899999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-C--CCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          58 HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-R--CSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        58 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~--~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      .|++++.+|..|.|.||..+.+-..++...++++| +  ...+|+.|-|||.+|+..|..++++.+++.
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999 6  788999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.79  E-value=7.2e-18  Score=102.41  Aligned_cols=123  Identities=35%  Similarity=0.512  Sum_probs=114.4

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCC-----HHHHHHHHhcCC---CCCCCCCCCCcH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGY-----VDMCKLLIKHQI---DVNAQDIVGSSP   72 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~---~~~~~~~~~~t~   72 (134)
                      ..+.++++.++..+...++++++..+ +.+.++..|.|++|+|+..++     .+++++|+..|.   ..+.++..|.||
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            34789999999999999999999999 558899999999999999999     999999999999   666679999999


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          73 LHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        73 l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      +|+|+..++.++++.+++.+ +....+..+.|+++.|+..+..+++..++..+
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999 88888999999999999999999999999865

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=7.8e-18  Score=93.49  Aligned_cols=103  Identities=47%  Similarity=0.736  Sum_probs=94.6

Q ss_pred             cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        32 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      ++..|.+||++|+..++.+++++++..+...+..+..|.+|++.|+..+..+++++|++.+ .....+..+.||+++|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            4578999999999999999999999999988888999999999999999999999999999 777778889999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+.+++..+..|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~  106 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDG  106 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCC
Confidence            999999999999998887776543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=9.2e-18  Score=113.05  Aligned_cols=127  Identities=14%  Similarity=0.079  Sum_probs=107.5

Q ss_pred             HHHHHHHhC--CHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCC--CcHHHHHHHhCcH
Q psy6445           7 PLHYAAKKN--KLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG--SSPLHYAAKKNKL   82 (134)
Q Consensus         7 ~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~--~t~l~~a~~~~~~   82 (134)
                      .||.-.+.+  +.+++++|+++|....+ .....+++.|+..|+.+++++|+.+|++++.++..|  .||+|.|......
T Consensus       309 ~l~~Yl~~~~v~ieiIK~LId~Ga~~~r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~  387 (631)
T PHA02792        309 LLSEYVSYHTVYINVIKCMIDEGATLYR-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHES  387 (631)
T ss_pred             HHHHHHhcCCccHHHHHHHHHCCCcccc-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccH
Confidence            356666666  88999999999964322 224556889999999999999999999999888764  6999998877665


Q ss_pred             H---HHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          83 D---IAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        83 ~---~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +   ++++++++| +.+.++..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       388 ~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        388 DVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             hHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            4   578889999 889999999999999999999999999999999999998766

>KOG0507|consensus

Probab=99.77  E-value=4.1e-18  Score=114.65  Aligned_cols=128  Identities=30%  Similarity=0.420  Sum_probs=79.5

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      .|..|||+|+-.|+.++++.++.+++ .+.....|.+|||.++..|+.+++.+|++.+.++-.++..+.|++..|++.|+
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            46666666666666666666666663 35555666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhcC-C--------CCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcc
Q psy6445          82 LDIAKILIESN-R--------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ  130 (134)
Q Consensus        82 ~~~~~~Ll~~~-~--------~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  130 (134)
                      .++++.|++.. .        ...+...+.+|+|.|+..|+.++++.|+..|++++..
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            66666665542 1        1123334456666666666666666666666666543

>KOG3676|consensus

Probab=99.76  E-value=1.1e-17  Score=113.19  Aligned_cols=132  Identities=22%  Similarity=0.334  Sum_probs=114.6

Q ss_pred             CCccHHHHHHHh---CCHHHHHHHHhhCcc------cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-------
Q psy6445           3 VGSSPLHYAAKK---NKLDIAKILIESNRC------SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-------   66 (134)
Q Consensus         3 ~g~~~l~~a~~~---~~~~~~~~ll~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-------   66 (134)
                      .|+|+||.|+.+   ++.++++.|++..+.      ....+.|.||||+|+.+.+.++|.+|+..|++++++-       
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~  221 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP  221 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc
Confidence            589999999984   356889999986632      2345789999999999999999999999999987441       


Q ss_pred             ----------------CCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC--C
Q psy6445          67 ----------------IVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID--V  127 (134)
Q Consensus        67 ----------------~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~--~  127 (134)
                                      .+|..||-+|+-.++.+++++|++++ +++..|..|+|.||..+..-..++..+++++|++  .
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~  301 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALE  301 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence                            24678999999999999999999999 9999999999999999999999999999999999  7


Q ss_pred             CcccccC
Q psy6445         128 NAQDIEA  134 (134)
Q Consensus       128 ~~~~~~g  134 (134)
                      ..+|..|
T Consensus       302 ~v~N~qg  308 (782)
T KOG3676|consen  302 HVRNNQG  308 (782)
T ss_pred             cccccCC
Confidence            7777654

>KOG0505|consensus

Probab=99.76  E-value=1.3e-17  Score=108.45  Aligned_cols=128  Identities=30%  Similarity=0.394  Sum_probs=114.8

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHH
Q psy6445           7 PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA   85 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   85 (134)
                      -|.-|+..++.+-++.|+..+ .++..+.+|.|++|-++.-.+.++|++++++|..+++.+..++||+|.|+..++..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            356788999999999999988 5678889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC-C-----------------------------------------------------------CCCCCCCCCChh
Q psy6445          86 KILIESN-R-----------------------------------------------------------CSLENKMKKTPL  105 (134)
Q Consensus        86 ~~Ll~~~-~-----------------------------------------------------------~~~~~~~~~t~l  105 (134)
                      ++|+.+| +                                                           .+.+...|.|++
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            9999874 1                                                           112233478999


Q ss_pred             hHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         106 HLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       106 ~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |.|+..|+.++.++|++.|.+++.+|.+|
T Consensus       203 HvAaa~Gy~e~~~lLl~ag~~~~~~D~dg  231 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAGYSVNIKDYDG  231 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhccCcccccccC
Confidence            99999999999999999999999999886

>KOG4214|consensus

Probab=99.76  E-value=1e-17  Score=85.76  Aligned_cols=95  Identities=31%  Similarity=0.424  Sum_probs=84.2

Q ss_pred             ChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHH
Q psy6445          38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM  116 (134)
Q Consensus        38 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~  116 (134)
                      -.+.+++.+|..+-|+-.+..|.+++.. ..+++|+|+|+-+|+.+++++|+..| +++.+++.+.|||-.|+..|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            3467889999999999999998665532 36899999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccc
Q psy6445         117 CKLLIKHQIDVNAQDIE  133 (134)
Q Consensus       117 ~~~L~~~g~~~~~~~~~  133 (134)
                      +++|++.|++...+--+
T Consensus        83 VklLL~~GAdrt~~~Pd   99 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPD   99 (117)
T ss_pred             HHHHHHcCcccceeCCC
Confidence            99999999998766433

>KOG0515|consensus

Probab=99.74  E-value=2.3e-17  Score=107.59  Aligned_cols=117  Identities=30%  Similarity=0.294  Sum_probs=103.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         6 ~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      -.|.-|+..|.+++|+..+..- +....+..|.|+||-|+..|+.++|+||++.|+++|..|+.|+||||.|+..++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            3457788999999999999877 567778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC-C-CCCCCCCCCChhhHH--HhhCCHHHHHHHHh
Q psy6445          85 AKILIESN-R-CSLENKMKKTPLHLA--AQEGHVDMCKLLIK  122 (134)
Q Consensus        85 ~~~Ll~~~-~-~~~~~~~~~t~l~~a--~~~~~~~~~~~L~~  122 (134)
                      ++.|++.| . ....-.++.|+...+  ...|+..|.+||..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999 3 333445678999877  55789999999974

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.72  E-value=1.4e-16  Score=109.89  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=86.9

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHH
Q psy6445           7 PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA   85 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   85 (134)
                      .|+.|+..|+.+.++.|++.| +.+..+..|.||||+|+..|+.+++++|+..|++++..+..|.||+|+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            578899999999999999988 5577888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-------C-CCCCCCCCCCChhhHH
Q psy6445          86 KILIES-------N-RCSLENKMKKTPLHLA  108 (134)
Q Consensus        86 ~~Ll~~-------~-~~~~~~~~~~t~l~~a  108 (134)
                      ++|+++       + +....+..+.+|+..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999988       4 4445555555555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.71  E-value=2e-16  Score=109.08  Aligned_cols=96  Identities=27%  Similarity=0.433  Sum_probs=89.1

Q ss_pred             hhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHH
Q psy6445          39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC  117 (134)
Q Consensus        39 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~  117 (134)
                      .|+.|+..|+.+.+++|+..|.+++.++..|.||||+|+..++.+++++|++.| +.+..+..|.||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            377889999999999999999999999999999999999999999999999999 8889999999999999999999999


Q ss_pred             HHHHhc-------CCCCCcccccC
Q psy6445         118 KLLIKH-------QIDVNAQDIEA  134 (134)
Q Consensus       118 ~~L~~~-------g~~~~~~~~~g  134 (134)
                      ++|+++       |++....+..|
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g  188 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTG  188 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCC
Confidence            999998       77777666543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.68  E-value=2.8e-16  Score=75.04  Aligned_cols=52  Identities=54%  Similarity=0.891  Sum_probs=23.0

Q ss_pred             CChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHH
Q psy6445          37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL   88 (134)
Q Consensus        37 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   88 (134)
                      .||+|+|+..|+.+++++|++.+.+++.+|..|.||+|+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            3445555555555555555544444444444455555555555555555444

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.67  E-value=3e-16  Score=74.93  Aligned_cols=53  Identities=40%  Similarity=0.771  Sum_probs=30.4

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLI   56 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~   56 (134)
                      |.||||.|+..|+.+++++|++.+ +++..|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            556666666666666666666666 44555666666666666666666666654

...

>KOG1710|consensus

Probab=99.65  E-value=4.5e-15  Score=90.76  Aligned_cols=120  Identities=27%  Similarity=0.357  Sum_probs=108.4

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA-QDIVGSSPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~   80 (134)
                      ....||..++-+++.+-...|++.- ..+..|.+|-++|..|+-.|+.++++.+++.|+++|. ++..+.||||.|+..|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            3467999999999999999998865 4688999999999999999999999999999999987 4556899999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK  122 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  122 (134)
                      +.++++.|++.| .....|.-|+|+-.+|+.-|+.+|+..+-.
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999 778889999999999999999999887654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=1.9e-14  Score=87.41  Aligned_cols=105  Identities=34%  Similarity=0.525  Sum_probs=95.0

Q ss_pred             cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc-----HHHHHHHHhcCC---CCC-CCCC
Q psy6445          30 SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK-----LDIAKILIESNR---CSL-ENKM  100 (134)
Q Consensus        30 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~---~~~-~~~~  100 (134)
                      ...+..+.++++.++..+..+.+.+++..+.+++.++..|.||+|+|+..++     .++++.|++.+.   ... .+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3445668899999999999999999999999999999999999999999999     999999999886   444 4889


Q ss_pred             CCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       101 ~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |.||+|+|+..|+.++++.|++.|++++.++..|
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g  180 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYG  180 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCC
Confidence            9999999999999999999999999999887654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.64  E-value=4.3e-16  Score=74.81  Aligned_cols=49  Identities=39%  Similarity=0.658  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHH
Q psy6445          60 IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLA  108 (134)
Q Consensus        60 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a  108 (134)
                      .+++..|..|.||||+|+.+++.+++++|++.+ +...++..|+||+++|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            444555555555555555555555555555555 5555555555555544

>KOG4369|consensus

Probab=99.64  E-value=2.4e-16  Score=110.59  Aligned_cols=127  Identities=21%  Similarity=0.304  Sum_probs=116.0

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA-QDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~   82 (134)
                      .|+|..||..|+.+.++.|+..| .+.-+|+.|.+||.+|+..|+..+|+.|+...+++.. .|+.+.|+|.+||..|+.
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~  837 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT  837 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence            57899999999999999999998 5677899999999999999999999999999888875 567889999999999999


Q ss_pred             HHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          83 DIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        83 ~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      +++++|+..| +..-++....|||.+|...|+.+++..|+..|+.|+.+-
T Consensus       838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            9999999999 777888889999999999999999999999998887653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.60  E-value=1.7e-15  Score=72.68  Aligned_cols=54  Identities=41%  Similarity=0.668  Sum_probs=32.2

Q ss_pred             HHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445          23 LIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus        23 ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      |++.+  +.+..|..|.||||+|+..|+.+++++|++.|.+++.++..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555  3477899999999999999999999999999999999999999999987

>KOG0515|consensus

Probab=99.53  E-value=5.7e-14  Score=92.14  Aligned_cols=88  Identities=33%  Similarity=0.386  Sum_probs=82.7

Q ss_pred             hhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHH
Q psy6445          40 LHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK  118 (134)
Q Consensus        40 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~  118 (134)
                      |.-|+..|-+++|+.++..-.++.+.+..|.|+||.|+-.|+++++++|++.| +.+..|.+|+||||+|+..++..+.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            34478899999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHhcCCCC
Q psy6445         119 LLIKHQIDV  127 (134)
Q Consensus       119 ~L~~~g~~~  127 (134)
                      .|++.|+-+
T Consensus       634 qLVe~Gaav  642 (752)
T KOG0515|consen  634 QLVESGAAV  642 (752)
T ss_pred             HHHhccceE
Confidence            999999765

>KOG1710|consensus

Probab=99.51  E-value=2.1e-13  Score=83.57  Aligned_cols=90  Identities=27%  Similarity=0.341  Sum_probs=82.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-c-cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-C-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.++|.-|+.+|+.+.++.|++.|. . ...+..+.|||++|+..|+.++..+|++.|+.+...++-|+|+-.+|+.
T Consensus        42 D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   42 DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHH
Confidence            6789999999999999999999999994 3 3345678999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHh
Q psy6445          79 KNKLDIAKILIE   90 (134)
Q Consensus        79 ~~~~~~~~~Ll~   90 (134)
                      .|+.+|+..+=.
T Consensus       122 VG~H~CV~iINN  133 (396)
T KOG1710|consen  122 VGHHECVAIINN  133 (396)
T ss_pred             hcchHHHHHHhc
Confidence            999999887733

>KOG4369|consensus

Probab=99.47  E-value=1.2e-13  Score=97.46  Aligned_cols=129  Identities=24%  Similarity=0.354  Sum_probs=112.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-c-cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-C-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |+-|.+||.+|+..|+..+|+.|++... . -..|+.+.++|.+||..|+.+++++|+..|++...++....||+..|..
T Consensus       787 dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~S  866 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS  866 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcC
Confidence            6789999999999999999999998773 3 5678888999999999999999999999999988888889999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCC--CCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          79 KNKLDIAKILIESN-RCSL--ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~--~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      .|.++++..|+..| .++.  -.+.|.+||++|.+.|+.+..+.|++.|-+++.
T Consensus       867 ggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  867 GGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             cchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            99999999999988 4433  355678999999999999999999999888875

>KOG0818|consensus

Probab=99.38  E-value=5.5e-12  Score=82.37  Aligned_cols=95  Identities=25%  Similarity=0.350  Sum_probs=85.0

Q ss_pred             ccccCCCCh------hhHHHhhCCHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCC
Q psy6445          31 LENKMKKTP------LHLAAQEGYVDMCKLLIKHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK  102 (134)
Q Consensus        31 ~~~~~~~~~------l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~  102 (134)
                      .+|.+|.+.      ||.+++.|+.++.-.|+..|+++|..+.. |.||||.|+..|+..-+++|+-+| ++...+.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            345555544      89999999999999999999999998875 889999999999999999999999 8999999999


Q ss_pred             ChhhHHHhhCCHHHHHHHHhcCC
Q psy6445         103 TPLHLAAQEGHVDMCKLLIKHQI  125 (134)
Q Consensus       103 t~l~~a~~~~~~~~~~~L~~~g~  125 (134)
                      ||+.+|...|+.++++.|++...
T Consensus       202 tP~~~AR~~gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEIQY  224 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHHHH
Confidence            99999999999999999987543

>KOG0506|consensus

Probab=99.36  E-value=1.6e-12  Score=84.40  Aligned_cols=86  Identities=28%  Similarity=0.409  Sum_probs=46.4

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~   82 (134)
                      ..+++.|++.|++..++.+.-.+ +...+|++.+|+||.|+..|+.+++++|++. +.+++.+|++|+||+--|...++.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            34455555555555555444444 3455555555555555555555555555554 455555555555555555555555


Q ss_pred             HHHHHHHh
Q psy6445          83 DIAKILIE   90 (134)
Q Consensus        83 ~~~~~Ll~   90 (134)
                      +++++|-+
T Consensus       587 ~v~k~L~~  594 (622)
T KOG0506|consen  587 EVVKLLEE  594 (622)
T ss_pred             HHHHHHHH
Confidence            55555543

>KOG0783|consensus

Probab=99.33  E-value=2.1e-12  Score=88.93  Aligned_cols=82  Identities=27%  Similarity=0.448  Sum_probs=77.5

Q ss_pred             ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhh
Q psy6445          29 CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLH  106 (134)
Q Consensus        29 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~  106 (134)
                      .+++|..|+++||+++..+..++++||+++|+++..+|.+ |+||||-|+.+|+++|+..|+.+| ...+.|+.|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            4789999999999999999999999999999999999875 899999999999999999999999 88899999999999


Q ss_pred             HHHh
Q psy6445         107 LAAQ  110 (134)
Q Consensus       107 ~a~~  110 (134)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8877

>KOG3609|consensus

Probab=99.27  E-value=4.9e-11  Score=82.17  Aligned_cols=118  Identities=15%  Similarity=0.221  Sum_probs=101.0

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCc-----ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNR-----CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      +.--+..|+.+|+...|+.+++...     .+..|.-|.+++++|+.+-+.+++++|++.+...       ..++..|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            3445788999999999999998652     3667888999999999999999999999997765       358999999


Q ss_pred             hCcHHHHHHHHhcCCCC-----------CCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          79 KNKLDIAKILIESNRCS-----------LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~~~~-----------~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      .+..++++.++.+....           .....+.||+.+|+..+++||+++|+++|+.+.
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999876222           344557899999999999999999999999874

>KOG0818|consensus

Probab=99.23  E-value=1.1e-10  Score=76.44  Aligned_cols=85  Identities=28%  Similarity=0.411  Sum_probs=76.9

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCc-c-cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           7 PLHYAAKKNKLDIAKILIESNR-C-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~~-~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      -||.+++.|+++..-.|+..|+ . ....+.|.||||.|++.|+.--+++|+-+|+++...|..|.||+.+|-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4899999999999999999994 3 3445779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy6445          85 AKILIES   91 (134)
Q Consensus        85 ~~~Ll~~   91 (134)
                      .+.|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            8888763

>KOG0506|consensus

Probab=99.22  E-value=2.6e-11  Score=78.97  Aligned_cols=92  Identities=22%  Similarity=0.309  Sum_probs=85.2

Q ss_pred             cCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhh
Q psy6445          34 KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        34 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~  111 (134)
                      ..+...+.+|+..|....++.+.-.|.++.+.|...+|+||.|+.-|+++++++|++..  ++..++..++|||+-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            34567789999999999999999999999999999999999999999999999999876  8889999999999999999


Q ss_pred             CCHHHHHHHHhcCC
Q psy6445         112 GHVDMCKLLIKHQI  125 (134)
Q Consensus       112 ~~~~~~~~L~~~g~  125 (134)
                      ++.+++++|-+...
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999987654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.20  E-value=3.9e-11  Score=49.87  Aligned_cols=29  Identities=48%  Similarity=0.815  Sum_probs=22.2

Q ss_pred             CCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445         100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus       100 ~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888788888888887777775

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.19  E-value=4.5e-11  Score=50.99  Aligned_cols=32  Identities=59%  Similarity=0.878  Sum_probs=27.4

Q ss_pred             CCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445         100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus       100 ~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      +|.||||+|+..++.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47888888888888888888888888888876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=99.10  E-value=9.5e-10  Score=73.39  Aligned_cols=57  Identities=26%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCC
Q psy6445          69 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI  125 (134)
Q Consensus        69 ~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  125 (134)
                      |+|+||.|+..|+..+.++|+.+| +...++.+|+|+|.||.+.|..||+..|+++|.
T Consensus       661 grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  661 GRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            445555555555555555555544 444445555555555555555555555555443

>KOG0705|consensus

Probab=99.08  E-value=9.6e-10  Score=73.37  Aligned_cols=88  Identities=28%  Similarity=0.366  Sum_probs=77.4

Q ss_pred             HHHHHHhCCHHHHHHHHhhCcc-----cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcH
Q psy6445           8 LHYAAKKNKLDIAKILIESNRC-----SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         8 l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~   82 (134)
                      |.-|....++..+-.|+.+|..     ..-+.+|+|+||+|+..|+..+.++|+=+|++...+|..|.|+|.+|-+.+..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            5667777888999999999832     23345789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q psy6445          83 DIAKILIESNRCS   95 (134)
Q Consensus        83 ~~~~~Ll~~~~~~   95 (134)
                      +|+..|+.+|.+.
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999543

>KOG0782|consensus

Probab=99.08  E-value=1.2e-09  Score=73.16  Aligned_cols=116  Identities=21%  Similarity=0.262  Sum_probs=91.8

Q ss_pred             HHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           8 LHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID--VNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         8 l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      +..|+..+++--++..-..| .....+...++.||+|+..|+-++|+|+++++..  ++..+..|.|+||.|+.+++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            45566666555444444444 5566777788899999999999999999998754  34566778899999999999999


Q ss_pred             HHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          85 AKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        85 ~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      +++|++.| .....+..|.||-.-|-.-+..+++-||-.+
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999 6777788899999999999999999988765

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=3.5e-10  Score=46.96  Aligned_cols=24  Identities=42%  Similarity=0.780  Sum_probs=11.3

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN   27 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~   27 (134)
                      |+||||+||+.|+.+++++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            444444444444444444444444

>KOG0782|consensus

Probab=99.07  E-value=5.6e-10  Score=74.69  Aligned_cols=90  Identities=27%  Similarity=0.384  Sum_probs=82.4

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCcc---cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNRC---SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      .+-.+.||.|++.|+-++|+|++++++.   ...++.|.|+||.|+..++..++++|++-|+.+...|..|.||-.-|-+
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHh
Confidence            4557899999999999999999999954   5567899999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHhc
Q psy6445          79 KNKLDIAKILIES   91 (134)
Q Consensus        79 ~~~~~~~~~Ll~~   91 (134)
                      .+..+++.||-..
T Consensus       977 a~d~dlaayle~r  989 (1004)
T KOG0782|consen  977 AGDPDLAAYLESR  989 (1004)
T ss_pred             cCCchHHHHHhhh
Confidence            9999999999543

>KOG0783|consensus

Probab=99.01  E-value=2.9e-10  Score=78.79  Aligned_cols=78  Identities=26%  Similarity=0.388  Sum_probs=71.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-ccc-ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|+|+||+|+..+..+++++|+++| +.. +..+.|+||||-|+-+|+++++-.|+.+|..+...|..|.+||..-++
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            568999999999999999999999999 444 445789999999999999999999999999999999999999987776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.01  E-value=9.8e-10  Score=46.78  Aligned_cols=24  Identities=46%  Similarity=0.904  Sum_probs=10.8

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN   27 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~   27 (134)
                      |.||||+|+..++.+++++|+++|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc
Confidence            444444444444444444444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0511|consensus

Probab=98.99  E-value=4.5e-09  Score=67.21  Aligned_cols=74  Identities=28%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             CChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCChhhHHHh
Q psy6445          37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        37 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~  110 (134)
                      .--|..|++.|..+.+++|++.|.++|+.|.+..+|+.+|+..||..++++|++.|.++.++....--.++++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh
Confidence            33477788888888888888888888888888888888888888888888888888666666554444444433

>KOG0522|consensus

Probab=98.95  E-value=6.6e-09  Score=68.73  Aligned_cols=83  Identities=27%  Similarity=0.450  Sum_probs=49.5

Q ss_pred             hhhHHHhhCCHHHHHH-HHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHH
Q psy6445          39 PLHLAAQEGYVDMCKL-LIKH-QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVD  115 (134)
Q Consensus        39 ~l~~a~~~~~~~~~~~-l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~  115 (134)
                      |+|.++.+...+-... +... +..++..|..|.||+|.|+..|+.+.++.|+..+ +...+|..|++||+-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            3666665555543333 2222 3445556666666666666666666666666666 56666666666666666666665


Q ss_pred             HHHHHH
Q psy6445         116 MCKLLI  121 (134)
Q Consensus       116 ~~~~L~  121 (134)
                      ++.-++
T Consensus       103 ~i~~vl  108 (560)
T KOG0522|consen  103 IITEVL  108 (560)
T ss_pred             HHHHHH
Confidence            555554

>KOG0520|consensus

Probab=98.86  E-value=2.7e-09  Score=75.27  Aligned_cols=121  Identities=23%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      .|.+.+|+++..+..-+++.+++- + .....+..+...+|+++..|.-..+..+.-.|..++.+|..|+||||||..+|
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            578999999999999999999995 4 34667888899999977776655666666678999999999999999999999


Q ss_pred             cHHHHHHHHhcC-C------CCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          81 KLDIAKILIESN-R------CSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~------~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      +..++..|.+.| .      +....-.|.|+-.+|...|+..+..+|.+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999998766 2      222333478899999999999998888765

>KOG0522|consensus

Probab=98.82  E-value=3.3e-08  Score=65.56  Aligned_cols=85  Identities=27%  Similarity=0.387  Sum_probs=67.7

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC---cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           7 PLHYAAKKNKLDIAKILIESN---RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      |+|.++-..+.+-+...+...   .....|..|.||||.|+..|+.+.+..|+..+++...++..|++|+|-|+.+|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            478888777777666544433   33566778899999999999999999999999998889999999999999999888


Q ss_pred             HHHHHHhc
Q psy6445          84 IAKILIES   91 (134)
Q Consensus        84 ~~~~Ll~~   91 (134)
                      ++.-++++
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            77766654

>KOG0521|consensus

Probab=98.71  E-value=3.9e-08  Score=69.30  Aligned_cols=89  Identities=29%  Similarity=0.366  Sum_probs=78.6

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~  111 (134)
                      -..|.++||.|+.++...++++|+++|.+++..+..|.+|+|.+...|+...+..+++.+ +....+..+.+|+.+|...
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            346789999999999999999999999999999999999999999999999999999988 8888999999999999776


Q ss_pred             CCHHHHHHHH
Q psy6445         112 GHVDMCKLLI  121 (134)
Q Consensus       112 ~~~~~~~~L~  121 (134)
                      .+.++.-++.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            6655555444

>KOG0511|consensus

Probab=98.70  E-value=1.4e-07  Score=60.55  Aligned_cols=59  Identities=24%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN   63 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~   63 (134)
                      .--|..||+.|+.+.|++|++.| +.+..|....+||++|+..|+..++++|+++|+--.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            34578999999999999999988 679999999999999999999999999999997543

>KOG0521|consensus

Probab=98.50  E-value=2.3e-07  Score=65.53  Aligned_cols=86  Identities=30%  Similarity=0.417  Sum_probs=77.8

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      .|.++||.|+..+..-.+++|++.+ +.+..+..|.+|+|.+...|+...+..++.+|++.+..+..+.+|+.+|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            5789999999999999999999999 568899999999999999999999999999999999999999999999988766


Q ss_pred             HHHHHHH
Q psy6445          82 LDIAKIL   88 (134)
Q Consensus        82 ~~~~~~L   88 (134)
                      .+.+-++
T Consensus       735 ~d~~~l~  741 (785)
T KOG0521|consen  735 ADIVLLL  741 (785)
T ss_pred             ccHHHHH
Confidence            5554443

>KOG3609|consensus

Probab=98.48  E-value=6.1e-07  Score=62.76  Aligned_cols=86  Identities=26%  Similarity=0.408  Sum_probs=71.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCC----------CCCCCCC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN----------AQDIVGS   70 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~----------~~~~~~~   70 (134)
                      |..|.++++.|+.+.+.++++.|+++....      ..+|..|+..|..+.|+.++.+.....          ..-..+.
T Consensus        59 d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~di  132 (822)
T KOG3609|consen   59 DPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDI  132 (822)
T ss_pred             ChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCc
Confidence            557999999999999999999999977321      458899999999999999999843321          1123577


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcC
Q psy6445          71 SPLHYAAKKNKLDIAKILIESN   92 (134)
Q Consensus        71 t~l~~a~~~~~~~~~~~Ll~~~   92 (134)
                      ||+..|+..+++||+++|++.|
T Consensus       133 tPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen  133 TPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             cHHHHHHHhcchHHHHHHHHcC
Confidence            9999999999999999999988

>KOG2384|consensus

Probab=98.47  E-value=1.9e-06  Score=50.56  Aligned_cols=64  Identities=20%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             cccccccCCCChhhHHHhhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q psy6445          28 RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ-IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES   91 (134)
Q Consensus        28 ~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~   91 (134)
                      +++..|..|+|++.+|+..|+-+.+.||+..| +.+...+..+.+...+|-..|..++++.|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            44555666666666666666666666666666 55556666666666666666666666666554

>KOG2384|consensus

Probab=98.40  E-value=1.4e-06  Score=51.02  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-c-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-R-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV   62 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   62 (134)
                      |.+|+|++++|+..|+.+.+.+|+..| . ....|..+..++.+|-+.|..+++..|.++..+-
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            678999999999999999999999999 3 4778999999999999999999999999884443

>KOG0520|consensus

Probab=98.25  E-value=1.7e-06  Score=61.76  Aligned_cols=97  Identities=23%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH-hcC-CCCCCCCCCCChhhH
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESN-RCSLENKMKKTPLHL  107 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~~-~~~~~~~~~~t~l~~  107 (134)
                      ...-.|.+.+|++...+...+++.+++. +......+..+...+|. |..++.+++-+++ ..+ +++.++..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3455678889999999999999999997 66666667777777887 5555666665554 455 899999999999999


Q ss_pred             HHhhCCHHHHHHHHhcCCCCC
Q psy6445         108 AAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus       108 a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      |..+|+..++..|...|++..
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccc
Confidence            999999999999998877654

>KOG2505|consensus

Probab=97.80  E-value=8.8e-05  Score=49.72  Aligned_cols=62  Identities=27%  Similarity=0.330  Sum_probs=51.6

Q ss_pred             HHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          49 VDMCKLLIKHQIDVNA------QDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        49 ~~~~~~l~~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      +..+++|..++...|.      .+....|+||+|+.+|...++.++|+.+ +++..|..|.||..++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            6788888888766643      2345679999999999999999999999 889999999999998873

>smart00248 ANK ankyrin repeats

Probab=97.78  E-value=7.3e-05  Score=29.62  Aligned_cols=27  Identities=44%  Similarity=0.840  Sum_probs=14.4

Q ss_pred             CCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445         101 KKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus       101 ~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      +.||+++|+..++.+++++|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            345555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.63  E-value=0.00018  Score=28.35  Aligned_cols=24  Identities=38%  Similarity=0.825  Sum_probs=11.3

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN   27 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~   27 (134)
                      |.+|+|.|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444444444444444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.50  E-value=0.00036  Score=46.97  Aligned_cols=67  Identities=24%  Similarity=0.285  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhCcc-------cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445          17 LDIAKILIESNRC-------SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus        17 ~~~~~~ll~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      ...+++|.+++..       ...+..-.|+||+|+..|..+++.+++.+|.++...|..|+||+..+....-.+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHH
Confidence            5567777776521       223444668899999999999999999999999999999999999988443333

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.18  E-value=0.0054  Score=37.58  Aligned_cols=112  Identities=15%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             HHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCC----CCCcHHHHHHH--hCcH
Q psy6445           9 HYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI----VGSSPLHYAAK--KNKL   82 (134)
Q Consensus         9 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~----~~~t~l~~a~~--~~~~   82 (134)
                      .-|+...+++-+.-++...      .....++-+++.++..+++.+|+..- .....|.    .+.--+.++..  ..+.
T Consensus       158 edAV~AsN~~~i~~~VtdK------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~  230 (284)
T PF06128_consen  158 EDAVKASNYEEISNLVTDK------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASY  230 (284)
T ss_pred             HHHHhhcCHHHHHHHhcch------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcH
Confidence            4455555555444444311      23346677777777778888888761 1111110    11122333333  3456


Q ss_pred             HHHHHHHhcC--CCC---CCCCCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          83 DIAKILIESN--RCS---LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        83 ~~~~~Ll~~~--~~~---~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      .++++.++.|  +++   .+-.+|.|.|+-|+..+..+++.+|+++|+-.
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            7889999988  333   34567899999999999999999999999844

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.63  E-value=0.0059  Score=30.93  Aligned_cols=47  Identities=28%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             hhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q psy6445          39 PLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN   92 (134)
Q Consensus        39 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~   92 (134)
                      .+..|+..|+.|+++.+++.+. ++      ..++..|+...+.++++||++..
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4677777777787777776542 21      24677777777778888877653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.23  E-value=0.063  Score=33.15  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhCcccccccC----CCChhhHHH--hhCCHHHHHHHHhcCC-CCCC---CCCCCCcHHH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESNRCSLENKM----KKTPLHLAA--QEGYVDMCKLLIKHQI-DVNA---QDIVGSSPLH   74 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~~l~~a~--~~~~~~~~~~l~~~~~-~~~~---~~~~~~t~l~   74 (134)
                      .+++..|+.++.-+++-+|+.+-.....|-.    +.--+.++.  ...+..++++++.+|. +++.   +-..|.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            4678888888999999999987643222211    111233332  3445688999999974 3332   2356899999


Q ss_pred             HHHHhCcHHHHHHHHhcCCC
Q psy6445          75 YAAKKNKLDIAKILIESNRC   94 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~~~   94 (134)
                      -|..+++.+++.+|+++|..
T Consensus       260 NA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCcc
Confidence            99999999999999999954

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.12  E-value=0.02  Score=29.02  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH   58 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~   58 (134)
                      ....+..|+.-|+.++++.+++.+...      ...+..|+...+-+++++|++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKNKPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHhccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            345789999999999999999866322      3468999999999999999997

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.94  E-value=0.13  Score=30.71  Aligned_cols=114  Identities=22%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHH-
Q psy6445           7 PLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA-   85 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~-   85 (134)
                      .|.-|++++.++++++.-+.....  -...++.+..||+..+.++|.|+-++=.-.+     -.+.+.+|...++.++. 
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~--~~~~q~LFElAC~~qkydiV~WI~qnL~i~~-----~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE--RYLNQELFELACEEQKYDIVKWIGQNLHIYN-----PEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc--hhHHHHHHHHHHHHccccHHHHHhhccCCCC-----chhhhhhhhhccchhHHH
Confidence            456677888888777766544311  1334556777888888888888855522111     12345566666655542 


Q ss_pred             ---HHHHhcCCCCCCCCC----CCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          86 ---KILIESNRCSLENKM----KKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        86 ---~~Ll~~~~~~~~~~~----~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                         .+++++.... .+.+    -..-+..|+..|....+.-.+++|.+++
T Consensus       122 lGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  122 LGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             HHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence               1122222111 0000    1123445666666666666666665554

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.28  E-value=0.22  Score=29.79  Aligned_cols=110  Identities=16%  Similarity=0.176  Sum_probs=70.4

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHH----HHHhcCCCCCCCCC--CCCcHHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCK----LLIKHQIDVNAQDI--VGSSPLHYA   76 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~----~l~~~~~~~~~~~~--~~~t~l~~a   76 (134)
                      .+.+.+..||+..+.++|+++-+.-..    .+-.+.+-+|....+.++..    ++..+...-...+.  .-...+.+|
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~i----~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a  150 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLHI----YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKA  150 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccCC----CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHH
Confidence            345778999999999999999553332    22223456777777765521    11112111111111  011346789


Q ss_pred             HHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh
Q psy6445          77 AKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK  122 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  122 (134)
                      +..|-..++--.+++| +.+      .+.|..|+..++-.+..+++.
T Consensus       151 ~~kgll~F~letlkygg~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  151 AAKGLLPFVLETLKYGGNVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHCCCHHHHHHHHHcCCccc------HHHHHHHHHhhHHHHHHHhhc
Confidence            9999999887777777 553      389999999999999888864

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-23
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-21
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-21
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-20
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-20
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-19
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-19
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-19
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-19
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-18
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-17
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-17
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-15
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-15
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-13
1uoh_A	226	Human Gankyrin Length = 226		1e-13
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-13
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-12
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-12
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		6e-12
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		6e-12
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		7e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-12
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-11
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-11
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-09
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-10
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-10
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		9e-10
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		9e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-08
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-07
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		7e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		5e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA+   L++ K+L+E+    + ++K  +TPLHLAA+ G++++ KLL++   DV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G +PLH AA+   L++ K+L+E+    + ++K  +TPLHLAA+ GH+++ KLL+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 122 K 122
           +
Sbjct: 122 E 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 69  GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV 127
           G +PLH AA+   L++ K+L+E+    + ++K  +TPLHLAA+ GH+++ KLL++   DV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 128 NAQD 131
           NA+D
Sbjct: 62  NAKD 65

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    + E+    TPLHLAA+ G++++ ++L+K+  DVNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           S+PLH AAK+  L+I ++L++     + ++ +  TPLHLAA  GH+++ ++L+K+  DVN
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 122 KHQIDVNAQ 130
           +HQ DVNA+
Sbjct: 332 QHQADVNAK 340

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 71  SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           +PLH A+    L I K L++     ++ N   +TPLH+AA+ GH ++ K L++++  VNA
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 130 Q 130
           +
Sbjct: 76  K 76

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA++  L+I ++L+++    + ++K   TPLHLAA+EG++++ ++L+K   DV
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+D  G +PLH AA++  L+I ++L+++    + ++K  KTP  LA +EGH D+ ++L 
Sbjct: 95  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Query: 122 K 122
           K
Sbjct: 155 K 155

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    + ++K   TPLHLAA+EG++++ ++L+K   DVNA+D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA++  L+I ++L+++    + ++K   TPLHLAA+EGH+++ ++L+K   DVN
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    + ++K   TPLHLAA+EG++++ ++L+K   DVNA+D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA++  L+I ++L+++    + ++K   TPLHLAA+EGH+++ ++L+K   DVN
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 129 AQD 131
           AQD
Sbjct: 129 AQD 131

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    + E+   KTPLHLAA +G++++ ++L+KH  DVNA D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA    L+I ++L+++    +  +    TPLHLAA  GH+++ ++L+K+  DVN
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  +    TPLHLAA  G++++ ++L+KH  DVNA DI+G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           S+PLH AA    L+I ++L++     +  +    TPLHLAA  GH+++ ++L+KH  DVN
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
           AA+  + D  +IL+ +    +  +    TPLHLAA  GH+++ ++L+KH  DVNA DI
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 11  AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+    D  K LIE+    +  +   +TPLH AA+EG+ ++ KLLI    DVNA+D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLHYAAK+   +I K+LI      + ++   +TPLH AA+EGH ++ KLLI    DVN
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 129 AQDIEA 134
             D + 
Sbjct: 131 TSDSDG 136

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +ILI +    +  +    TPLHLAA  G++++ ++L+KH  DV+A D+ G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA    L+I ++L++     +  +    TPLHLAA EGH+++ ++L+K+  DVN
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  +    TPLHLAA  G++++ ++L+KH  DVNA DI G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           S+PLH AA    L+I ++L++     +  +    TPLHLAA  GH+++ ++L+KH  DVN
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
           AA+  + D  +IL+ +    +  +    TPLHLAA  GH+++ ++L+KH  DVNA DI
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  +    TPLHLAA  G+ ++ ++L+KH  DVNA+D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA    L+I ++L++     + ++    TPLHLAA  GH+++ ++L+KH  DVN
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  +    TPLHLAA  G++++ ++L+KH  DV+A D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA    L+I ++L+++    +  +    TPLHLAA+ G++++ ++L+KH  DVN
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 76  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
           AA+  + D  +IL+ +    +  +    TPLHLAA  GH+++ ++L+KH  DV+A D+
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV 78

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 83/131 (63%), Gaps = 17/131 (12%)
Query: 18  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
           D+ K L+E+ R   +++++                 TPLHLAA  G++++ ++L+K+  D
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNA+D +G +PLH AA++  L+I ++L+++    +  +    TPLHLAA+ GH+++ ++L
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 121 IKHQIDVNAQD 131
           +K+  DVNAQD
Sbjct: 133 LKNGADVNAQD 143

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  + +  TPLHLAA  G++++ ++L+K+  DVNA D +G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           S+PLH AA    L+I ++L+++    + ++    TPLHLAA  GH+++ ++L+K+  DVN
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  + +  TPLHLAA+ G++++ ++L+K+  DVNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           ++PLH AA    L+I ++L++     + ++    TPLHLAA +GH+++ ++L+K+  DVN
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 19/132 (14%)
Query: 18  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
           D+ K L+E+ R   +++++                 TPLHLAA  G++++ ++L+K+  D
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
           VNA D+ G +PLH AA    L+I ++L++  ++  + +N    TPLHLAA+ GH+++ ++
Sbjct: 73  VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEV 131
Query: 120 LIKHQIDVNAQD 131
           L+KH  DVNAQD
Sbjct: 132 LLKHGADVNAQD 143

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 16/66 (24%)
Query: 83  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
           D+ K L+E+ R   +++++                 TPLHLAA  GH+++ ++L+K+  D
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 127 VNAQDI 132
           VNA D+
Sbjct: 73  VNASDL 78

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  + +  TPLHLAA  G++++ ++L+K+  DVNA D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA +  L++ ++L+++    +  +    TPLHLAA  GH+++ ++L+KH  DVN
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    +  +    TPLHL    G++++ ++L+K+  DVNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH AA +  L+I ++L++     +  +    TPLHLAA++GH+++ ++L+K+  DVN
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 80/131 (61%), Gaps = 17/131 (12%)
Query: 18  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
           D+ K L+E+ R   +++++                +TPLH+AA  G++++ ++L+++  D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNA D  G++PLH AA    L+I ++L++     + ++    TPL+LAA  GH+++ ++L
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 121 IKHQIDVNAQD 131
           +KH  DVNAQD
Sbjct: 121 LKHGADVNAQD 131

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 11  AAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+  + D  +IL+ +    + E+    TPLHLAA  G++++ ++L+K+  DVNA D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 70  SSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PL  AA    L+I ++L+++      N M+  TPLHLAA  GH+++ ++L+K+  DVN
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 129 AQD 131
           AQD
Sbjct: 141 AQD 143

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CS 95
           +TPLHLAA+ G++++ KLL++   DVNA+D  G +PLH AA+   L++ K+L+E+    +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96  LENKMKKTPLHLAAQEGHVDMCKLLIK 122
            ++K  +TPLHLAA+ GH+++ KLL++
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSL 96
           TPLHLAA  G +++ ++L+K+  DVNA D  G +PLH AA    L+I ++L++     + 
Sbjct: 41  TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA 100
Query: 97  ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            ++   TPLHLAA  G +++ ++L+KH  DVNAQD
Sbjct: 101 YDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 11  AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG 69
           AA+    D  K LIE+    +  +   +TPLH AA+ G+ ++ KLLI    DVNA+D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 70  SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +PLH+AA+    ++ K+LI      + ++   +TPLH AA+ GH ++ KLLI    DVN
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 129 AQDIEA 134
             D + 
Sbjct: 131 TSDSDG 136

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           ++G   +  A   NK  +  +L      +  +   KTPLHLAA+ G+ ++ KLL+    D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
            NA+D  G +PLH AA+    ++ K+L+ +    + ++   KTPLHLAA+ GH ++ KLL
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 121 IKHQIDVNAQDIEA 134
           +    D N  D + 
Sbjct: 123 LSQGADPNTSDSDG 136

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           ++G   +  A   NK  +  +L      +  +   +TPLH AA+ G+ ++ KLL+    D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
            NA+D  G +PLHYAA+    +I K+L+      + ++   +TPLH AA+ GH ++ KLL
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 121 IKHQIDVNAQDIEA 134
           +    D N  D + 
Sbjct: 123 LSKGADPNTSDSDG 136

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
            +G+SPLH AA+       ++L+ +        K+ +TPLH+AA EG+ ++ ++L+KH  
Sbjct: 32  WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA+D++  + LH+A + N  ++ ++LI+       ++K  KT   ++   G+ D+ ++
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 120 L 120
           L
Sbjct: 152 L 152

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
           AA+ G  D  ++L+ +  DVNA+D VG +PLH AA  + L+I ++L+++    +  + + 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +TPLHL A  GH+++ ++L+KH  DVNAQD
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 18  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
           D+ K L+E+ R   +++++                 TPLHLAA+ G++++ ++L+KH  D
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNA+DI G +PLH AA    L+I ++L+E     + ++K  KT   ++   G+ D+ ++L
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
            K
Sbjct: 133 QK 134

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 16/66 (24%)
Query: 83  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
           D+ K L+E+ R   +++++                 TPLHLAA+ GH+++ ++L+KH  D
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 127 VNAQDI 132
           VNA+DI
Sbjct: 73  VNARDI 78

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 17/122 (13%)
Query: 18  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGYVDMCKLLIKHQID 61
           D+ K L+E+ R   +++++                 TPLHLAA+ G++++ ++L+KH  D
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           VNA DI G +PLH AA    L+I ++L+E     + ++K  KT   ++   G+ D+ ++L
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 121 IK 122
            K
Sbjct: 133 QK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 16/66 (24%)
Query: 83  DIAKILIESNRCSLENKMK----------------KTPLHLAAQEGHVDMCKLLIKHQID 126
           D+ K L+E+ R   +++++                 TPLHLAA+ GH+++ ++L+KH  D
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 127 VNAQDI 132
           VNA DI
Sbjct: 73  VNASDI 78

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMK 101
           A + G  D  ++L+ +  DVNA D  G +PLH AAK+  L+I ++L++     +  +   
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +TPLHLAA  GH+++ ++L+++  DVNAQD
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQD 110

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q G +PLHYAA KN+ +IA +L+E       ++  + T +H AA +G + M  +L+ ++ 
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
             N QD  G++PLH A  + +++ AK+L+ +     +ENK +KTPL +A
Sbjct: 165 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q G +PLHYAA KN+ +IA +L+E       ++  + T +H AA +G + M  +L+ ++ 
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
             N QD  G++PLH A  + +++ AK+L+ +     +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q G +PLHYAA KN+ +IA +L+E       ++    T +H AA +G + M  +L+ ++ 
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
             N QD  G++PLH A  + +++ AK L+ +     +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q G +PLHYAA KN+ +IA +L+E       ++    T +H AA +G + M  +L+ ++ 
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLA 108
             N QD  G++PLH A  + +++ AK L+ +     +ENK +KTPL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
           AA+ G  D  ++L+ +  DVNA D  G +PLH AA+   L+I ++L++     + E+   
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            TPLHLAA  GH+++ ++L+KH  DVNAQD
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
           AA+ G  D  ++L  +  DVNA D  G +PLH AA    L+I ++L+++    +      
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +TPLHLAA   H+++ ++L+KH  DVNAQD
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQD 110

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
           AA+ G  D  ++L+ +  DVNA D  G++PLH AA  + L+I ++L++     +  +   
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            TPLHLAA  GH+++ ++L+KH  DVNAQD
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQD 110

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQ 59
             G +PLH A   + + + +IL+ +   +L  +M    TPL LAA+     M + LI   
Sbjct: 82  NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGHVDMC 117
            D+NA D  G + LH+AA  N  +   IL+   +NR + ++K  +TPL LAA+EG  +  
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK-DETPLFLAAREGSYEAS 200
Query: 118 KLLI 121
           K L+
Sbjct: 201 KALL 204

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           GS+ LH AAKK   ++ + L+ + +  +  ++    TP+  A +  +VD+ KLL+    D
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           +N +D   +  LH+AA    +DIA+IL+ + +C L   N    +PLH+AA+E   D   L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 120 LIKHQIDVNAQDIEA 134
            +    DV  ++ E 
Sbjct: 196 FLSRDSDVTLKNKEG 210

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11  AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
           AAK   ++  K L  ++S  C      + TPLH AA    V + + L++H  DV+A+D  
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 69  GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
           G  PLH A      ++A++L++     ++ +  K TPLH AA +G  ++CKLL++H  D
Sbjct: 77  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11  AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
           AAK   ++  K L  ++S  C      + TPLH AA    V + + L++H  DV+A+D  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 69  GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
           G  PLH A      ++A++L++     ++ +  K TPLH AA +G  ++CKLL++H  D
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 11  AAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV 68
           AAK   ++  K L  ++S  C      + TPLH AA    V + + L++H  DV+A+D  
Sbjct: 19  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 69  GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
           G  PLH A      ++A++L++     ++ +  K TPLH AA +G  ++CKLL++H  D
Sbjct: 79  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
           AA+ G  D  ++L+ +  DVNA+D  G +PL+ A     L+I ++L+++    +  + + 
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            TPLHLAA  GH+++ ++L+KH  DVNAQD
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 14  KNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSP 72
           K+ LD+A     S +  L  + KK  L  AA+ G  + +  LL    ++ +A D   S+P
Sbjct: 5   KSALDLAD---PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 73  LHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           LH AA  N++ I ++L++       ++K    PLH A   GH ++ +LL+KH   VNA D
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 132 I 132
           +
Sbjct: 122 L 122

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
           +G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +G S LH+AA  N +D A +L+++     ++N  ++TPL LAA+EG  +  K+
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 120 LIKH 123
           L+ H
Sbjct: 209 LLDH 212

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G + LH AA+ ++ D AK L+E S   ++++ M +TPLH A       + ++LI
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 122 KHQIDVNAQDIEA 134
           +++    A D++A
Sbjct: 111 RNR----ATDLDA 119

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
           +G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +G S LH+AA  N +D A +L+++     ++N  ++TPL LAA+EG  +  K+
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 120 LIKH 123
           L+ H
Sbjct: 209 LLDH 212

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSL 96
           TPLH AA+ G+ +  K L+    DVNA+   G++PLH AAK    +I K+L+ +    + 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 97  ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ 130
            +K   TP HLA + GH ++ KLL     DVNA+
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
           +G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    
Sbjct: 90  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 149
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +G S LH+AA  N +D A +L+++     ++N  ++TPL LAA+EG  +  K+
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 209
Query: 120 LIKH 123
           L+ H
Sbjct: 210 LLDH 213

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G + LH AA+ ++ D AK L+E S   ++++ M +TPLH A       + ++LI
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 122 KHQIDVNAQDIEA 134
           +++    A D++A
Sbjct: 112 RNR----ATDLDA 120

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
           +G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +G S LH+AA  N +D A +L+++     ++N  ++TPL LAA+EG  +  K+
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 120 LIKH 123
           L+ H
Sbjct: 177 LLDH 180

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G + LH AA+ ++ D AK L+E S   ++++ M +TPLH A       + ++LI
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 122 KHQIDVNAQDIEA 134
           +++    A D++A
Sbjct: 79  RNR----ATDLDA 87

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G SPLH+A ++ +  + ++LI    R ++ N+   TPLHLAA  G+ D+ + L++++ D+
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           NA +  G+ PLHYA    +  +A+ L+ +    S+ NK  + P+
Sbjct: 94  NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
           D+N  D  G SPLH+A ++ +  + ++LI    R ++ N+   TPLHLAA  GH D+ + 
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 120 LIKHQIDVNA 129
           L++++ D+NA
Sbjct: 86  LLQYKADINA 95

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G SPLH+A ++ +  + ++LI    R ++ N+   TPLHLAA  G+ D+ + L++++ D+
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           NA +  G+ PLHYA    +  +A+ L+ +    S+ NK  + P+
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-ESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
           D+N  D  G SPLH+A ++ +  + ++LI    R ++ N+   TPLHLAA  GH D+ + 
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 120 LIKHQIDVNA 129
           L++++ D+NA
Sbjct: 91  LLQYKADINA 100

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKM--KKTPLHLAAQEGYVDMCKLLIKHQI 60
           +G +PLH A   +   + +IL+ +    L+ +M    TPL LAA+     M + LI    
Sbjct: 54  MGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKL 119
           DVNA D +G S LH+AA  N +D A +L+++     ++N  ++TPL LAA+EG  +  K+
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
Query: 120 LIKH 123
           L+ H
Sbjct: 174 LLDH 177

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 2   QVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q GSSPLH AA   + D+  +L++        N  +  PLHLA Q+G+  + K L+    
Sbjct: 84  QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
             N +D+ G++PL YA      ++  +L++     +  N    T LH A  E HV + +L
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 120 LIKHQIDV 127
           L+ H   V
Sbjct: 204 LLLHGASV 211

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGHVDMCK 118
           ++V +QD  GSSPLH AA   + D+  +L++        N  +  PLHLA Q+GH  + K
Sbjct: 79  VNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 119 LLIKHQIDVNAQDIEA 134
            L+      N +D+  
Sbjct: 137 CLLDSNAKPNKKDLSG 152

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L +    ++++    +P+H AA+ G++D  K+L++H  DVN  D  G+ P+H A ++ 
Sbjct: 59  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
Query: 81  KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
              +   L   +     +    TPL LA Q G  D+  +L  H +
Sbjct: 119 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 8   LHYAAKKNKLDIAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
           LH+AA  N++D+ K  I        L   +  TPLH A ++G++ M   L+K+  D +  
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 66  DIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGH-VDMCKLLIKH 123
           D  G S +H AA+     I   LI   +   + ++   TPL  AA   H VD  +LL+  
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 124 QIDVNAQD 131
            + VN  D
Sbjct: 166 NVSVNLGD 173

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L +    ++++    +P+H AA+ G++D  K+L++H  DVN  D  G+ P+H A ++ 
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Query: 81  KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
              +   L   +     +    TPL LA Q G  D+  +L  H
Sbjct: 113 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G + LH A   + +D+ K L+E+    +  +     PLH AA  GY+D+ + LI     V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 63  NAQDIVGSSPLH-------YAAKKNKLDIAKILIESNRCSLENKMKK------------- 102
            A +  G +PL            +N+++   + IE+ R   E  M +             
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 103 --------TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
                   T LH+AA +G+ ++ KLLI+ + DVN +D + 
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PL +AA   ++ + + L+++     L  K +++ L LA  +GY D+ K+L+   +DV
Sbjct: 34  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G +PL YA   N +   K+L+ES    ++E       + LA   G+  + +++ 
Sbjct: 94  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 122 KH 123
            H
Sbjct: 154 SH 155

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PL +AA   ++ + + L+++     L  K +++ L LA  +GY D+ K+L+   +DV
Sbjct: 52  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G +PL YA   N +   K+L+ES    ++E       + LA   G+  + +++ 
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Query: 122 KH 123
            H
Sbjct: 172 SH 173

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PL +AA   ++ + + L+++     L  K +++ L LA  +GY D+ K+L+   +DV
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G +PL YA   N +   K+L+ES    ++E       + LA   G+  + +++ 
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 122 KH 123
            H
Sbjct: 156 SH 157

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L +    ++++    +P+H AA+ G++D  K+L++H  DVNA D  GS P+H A ++ 
Sbjct: 59  ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
Query: 81  KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
              +   L   +     +    TPL LA Q G  ++  +L  H +
Sbjct: 119 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L +    ++++    +P+H AA+ G++D  K+L++H  DVNA D  GS P+H A ++ 
Sbjct: 61  ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 81  KLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
              +   L   +     +    TPL LA Q G  ++  +L  H +
Sbjct: 121 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PL +A+   +++  + L+E      +  K +++ L LA+  GY D+  LL++  +D+
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 63  NAQDIVGSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G +PL YA + N +  +  +L      + E     TP+ LA   G+  + +++ 
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 122 KH 123
            H
Sbjct: 156 NH 157

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 23  LIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL 82
           LI SN  + + +    PLH AA+ G +   +  + +++ VN  D  GS+ L++A      
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 83  DIAKILIESNRCSL--ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           DI + L       L  +NK+  T LH AA +G+ D+ +LL+      + ++IE
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 31  LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
             N   +T LH+A+ +G +   + L+++  D N +D  G +PLH A     L + ++L++
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 91  S----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
                N    +N    +PLH AA+ GHVD+ KLL+ +    NA +I
Sbjct: 65  HKALVNTTGYQN---DSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4   GSSPLHYAAKKNKLDIA-KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           GS+ L +A K N+L IA K+L + +  + ++   KTPL  +   GY +M   L++H  +V
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           N +++ G +PL  A+K  + +I K L+E
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLE 155

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIA-KILIESNRCS 95
           +TPL +A   G  +    L+++   +  +DI GS+ L +A K N+L IA K+L + +  +
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 96  LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
            ++   KTPL  +   G+ +M   L++H  +VN +++E 
Sbjct: 96  TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PL +A+   +++  + L+E      +  K +++ L LA+  GY D+  LL++  +D+
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 63  NAQDIVGSSPLHYAAKKNKLD-IAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  D  G +PL YA   N +  +  +L      + E     TP+ LA   G+  + +++ 
Sbjct: 96  NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 122 KH 123
            H
Sbjct: 156 NH 157

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI-D 61
           G++PL+ A   N ++IAK LI+     +L+N +  +P   A  +G  ++   ++KH   D
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPL--HLAAQEG---HV 114
           +N  +  G + L  AA+K  +D  K+L+E  R     +N    T L   +  +EG   + 
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 115 DMCKLLIKHQIDVNAQD 131
           D+ KLL+++  D + +D
Sbjct: 159 DIVKLLMENGADQSIKD 175

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 4   GSSPLHYAAKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH A + ++ DI ++L+       L  K   TP  LAA  G V + KL +    DV
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK----------TPLHLAAQE 111
           N  D  G +    AA   K+   K L +     +L  K K+          T L  AA++
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 112 GHVDMCKLLIKHQ-IDVNAQD 131
           GHV++ K+L+     DVNA D
Sbjct: 159 GHVEVLKILLDEMGADVNACD 179

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH A + ++ DI ++L+       L  K   TP  LAA  G V + KL +    DV
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK----------TPLHLAAQE 111
           N  D  G +    AA   K+   K L +     +L  K K+          T L  AA++
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 112 GHVDMCKLLIKHQ-IDVNAQD 131
           GHV++ K+L+     DVNA D
Sbjct: 179 GHVEVLKILLDEMGADVNACD 199

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19  IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
           + +I+ E +  SL N    T LH A   G+ ++ K L++  ++VNA D  G +PLH AA 
Sbjct: 53  VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 79  KNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGHVDMCKLLIKHQ 124
            N + + K L+ES        M  + +  AA      +EG+    + L   Q
Sbjct: 113 CNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 19  IAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK 78
           + +I+ E +  SL N    T LH A   G+ ++ K L++  ++VNA D  G +PLH AA 
Sbjct: 53  VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 79  KNKLDIAKILIESNRCSLENKMKKTPLHLAA------QEGHVDMCKLLIKHQ 124
            N + + K L+ES        M  + +  AA      +EG+    + L   Q
Sbjct: 113 CNNVQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 30  SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
           + +N +++TPLHLA      ++ + L+    D   +D  G++PLH A ++  L    +L 
Sbjct: 36  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 90  ESNRCSL---------ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +S  C+           N    T LHLA+  G++ + +LL+    DVNAQ+
Sbjct: 96  QS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 30  SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
           + +N +++TPLHLA      ++ + L+    D   +D  G++PLH A ++  L    +L 
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 90  ESNRCSL---------ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +S  C+           N    T LHLA+  G++ + +LL+    DVNAQ+
Sbjct: 99  QS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
           AA+ G  D  ++L+ +  DV A+D  GS+PLH AA+   L++ K+L+E+    + ++K  
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 102 KTPLHLAAQEGHVDMCKLL 120
           KT   ++   G+ D+ ++L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G +P H A     L++ K L +       NK+     T LHLA  + + ++ + LI++  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
            V  +D     PLH AA    L + ++L  +  +  + ++K   TPL  A  EGH D   
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
           LL++
Sbjct: 192 LLVE 195

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G +P H A     L++ K L +       NK+     T LHLA  + + ++ + LI++  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
            V  +D     PLH AA    L + ++L  +  +  + ++K   TPL  A  EGH D   
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
           LL++
Sbjct: 192 LLVE 195

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G +P H A     L++ K L +       NK+     T LHLA  + + ++ + LI++  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKIL--IESNRCSLENKMKKTPLHLAAQEGHVDMCK 118
            V  +D     PLH AA    L + ++L  +  +  + ++K   TPL  A  EGH D   
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 119 LLIK 122
           LL++
Sbjct: 192 LLVE 195

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMK 101
           AA+ G  D  ++L+ +  DV A+D  GS+PLH AA+   L++ K+L+E+      ++K  
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 102 KTPLHLAAQEGHVDMCKLL 120
           KT   ++   G+ D+ ++L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 4   GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LH A      +  ++L+E  ++  +++ K  ++PL  A +   + M +LL++H  +
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
           VNAQ   GSS LH A+ +  L + + L+ S    SL+N    TPL +A     +D+ +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSL 96
           TPL LAA+     M + LI    DVNA D +G S LH+AA  N +D A +L+++     +
Sbjct: 17  TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 97  ENKMKKTPLHLAAQEGHVDMCKLLIKH 123
           +N  ++TPL LAA+EG  +  K+L+ H
Sbjct: 77  QNNKEETPLFLAAREGSYETAKVLLDH 103

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMK 101
           AA+ G  D  ++L+ +  DVNA+D  G +PLH AA++  L+I ++L+++    + ++K  
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 102 KTPLHLAAQEGHVDMCKLLIK 122
           KT   ++   G+ D+ ++L K
Sbjct: 69  KTAFDISIDNGNEDLAEILQK 89

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L+      L+++     +H AA+ G++D  + L++ Q DVN +D  G+ PLH AAK+ 
Sbjct: 55  RLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81  KLDIAKILI 89
            L + + L+
Sbjct: 115 HLRVVEFLV 123

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           G  ++ + L+    + + +D  G++ +H AA+   LD  + L+E     ++E+     PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
           HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L+      L+++     +H AA+ G++D  + L+++Q DVN +D  G+ PLH AAK+ 
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Query: 81  KLDIAKILI 89
            L + + L+
Sbjct: 115 HLRVVEFLV 123

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           G  ++ + L+    + + +D  G + +H AA+   LD  + L+E+    ++E+     PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
           HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L+      L+++     +H AA+ G++D  + L++ Q DVN +D  G+ PLH AAK+ 
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81  KLDIAKILI 89
            L + + L+
Sbjct: 115 HLRVVEFLV 123

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           G  ++ + L+    + + +D  G + +H AA+   LD  + L+E     ++E+     PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
           HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 21  KILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           ++L+      L+++     +H AA+ G++D  + L++ Q DVN +D  G+ PLH AAK+ 
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 81  KLDIAKILI 89
            L + + L+
Sbjct: 115 HLRVVEFLV 123

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           G  ++ + L+    + + +D  G + +H AA+   LD  + L+E     ++E+     PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
           HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 6   SPLHYAA-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
           SP+H AA   ++L +  ++ +    ++      +PLH A   G++   K+L+KH   VN 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 65  QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
                 +PL  A      D   +L++            +P+H AA+ GHV+    LI + 
Sbjct: 65  VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 125 IDVN 128
            +++
Sbjct: 125 GNID 128

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 6   SPLHYAA-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
           SP+H AA   ++L +  ++ +    ++      +PLH A   G++   K+L+KH   VN 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 65  QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
                 +PL  A      D   +L++            +P+H AA+ GHV+    LI + 
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 125 IDVN 128
            +++
Sbjct: 181 GNID 184

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPL 105
           G  ++ + L+    + + +D  G + +H AA+  +LD  + L+E     ++E+     PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 106 HLAAQEGHVDMCKLLIKH 123
           HLAA+EGH+ + + L+KH
Sbjct: 108 HLAAKEGHLRVVEFLVKH 125

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 4   GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LHYAA+ +   I K L+  + +    +++  KTP+ LAAQEG +++   LI+    
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
           V A D    +    A   N  +I  I    +RC  E
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIF---DRCRPE 371

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 69  GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
           G + LHYAA+ +   I K L+  + +    +++  KTP+ LAAQEG +++   LI+    
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 127 VNAQD 131
           V A D
Sbjct: 339 VEAVD 343

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           ++  +T L LA   G VD+ K L+  + DVN QD  GS+ L  A +    +IA +L+   
Sbjct: 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 93  RC--SLENKMKKTPLHLAAQEGHVDMCKLL 120
            C  SL ++   T L +A   G  ++  +L
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 42  LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKM 100
            A + G +D  K  +    DVN     G  PLHYAA   +L+I + +L++    +  +K 
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQID 126
             TPL  A  EGHV   KLL+    D
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGAD 98

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 42  LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK-ILIESNRCSLENKM 100
            A + G +D  K  +    DVN     G  PLHYAA   +L+I + +L++    +  +K 
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 101 KKTPLHLAAQEGHVDMCKLLIKHQID 126
             TPL  A  EGHV   KLL+    D
Sbjct: 68  HITPLLSAVYEGHVSCVKLLLSKGAD 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-41
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-41
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-36
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-39
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-40
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-39
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-38
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-37
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	8e-37
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	2e-31
2rfa_A	232	Transient receptor potential cation channel subfa	2e-28
2rfa_A	232	Transient receptor potential cation channel subfa	4e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-36
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-27
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2pnn_A	273	Transient receptor potential cation channel subfa	1e-27
2pnn_A	273	Transient receptor potential cation channel subfa	2e-22
2pnn_A	273	Transient receptor potential cation channel subfa	2e-22
2pnn_A	273	Transient receptor potential cation channel subfa	1e-18
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  136 bits (345), Expect = 2e-41
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G   L    + N        I        N +    L  ++ EG  D+ + +I    D +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCKL 119
             +  G + LH A      +I K L++     N     +    TPLH AA   +V +CK 
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKF 121

Query: 120 LIKHQIDVNAQD 131
           L++    V A  
Sbjct: 122 LVESGAAVFAMT 133

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  128 bits (324), Expect = 3e-38
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             + L  ++ + + D+ + +I               T LH A   G+ ++ K L++  ++
Sbjct: 37  PLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
           VNA D  G +PLH AA  N + + K L+ES       +  +           +EG+    
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155

Query: 118 KLLIKHQIDVNAQD 131
           + L   Q  +   +
Sbjct: 156 QFLYGVQEKMGIMN 169

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  100 bits (252), Expect = 1e-27
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + LH A      +I K L++     N     +    TPLH AA    V +CK L++  
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKFLVESG 126

Query: 60  IDVNAQ---DIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVD 115
             V A    D+  ++      ++     ++ L     +  + NK     L     +   +
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

Query: 116 MCKLLIKHQIDVNA 129
              L +K    +  
Sbjct: 187 ---LPMKEGDCMTI 197

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G +PLH AA  N + + K L+ES       +  +           +EGY    + L   Q
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGH 113
             +   +      L     +N  ++     +           +     A     
Sbjct: 163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.3 bits (186), Expect = 8e-18
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 66  DIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
           +I G   L    + N        I        N +    L  ++ EG  D+ + +I    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 126 DVNAQDIE 133
           D +  + E
Sbjct: 62  DPSLPNDE 69

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  134 bits (340), Expect = 2e-41
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
               L  AAK   ++  K L       C      + TPLH AA    V + + L++H  D
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           V+A+D  G  PLH A      ++A++L+  +   +   +  K TPLH AA +G  ++CKL
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 120 LIKHQIDVNAQD 131
           L++H  D   ++
Sbjct: 127 LLQHGADPTKKN 138

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  121 bits (306), Expect = 2e-36
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
            S+PLH+AA  N++ + + L+  +   +   +K    PLH A   G+ ++ +LL+KH   
Sbjct: 42  QSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VN  D+   +PLH AA K K +I K+L+  +       N+   TPL L   +G  D+  L
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGNTPLDLVK-DGDTDIQDL 158

Query: 120 LIKH 123
           L   
Sbjct: 159 LRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  104 bits (263), Expect = 8e-30
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLI-KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
           N      L  AA+ G V+  K L     ++    +   S+PLH+AA  N++ + + L+  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63

Query: 92  NRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +   +   +K    PLH A   GH ++ +LL+KH   VN  D
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  136 bits (344), Expect = 4e-41
 Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    D
Sbjct: 90  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VNA D +G S LH+AA  N +D A +L+  N  + +  N  ++TPL LAA+EG  +  K+
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKV 208

Query: 120 LIKHQIDVNAQD 131
           L+ H  + +  D
Sbjct: 209 LLDHFANRDITD 220

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  126 bits (319), Expect = 2e-37
 Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G++PL  AA+     + + LI ++   +       K+ LH AA    VD   +L+K+  +
Sbjct: 124 GTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
            + Q+    +PL  AA++   + AK+L+  +  + +  + M + P  +A +  H D+ +L
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 120 LIKHQIDVNAQ 130
           L       +  
Sbjct: 242 LDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  123 bits (312), Expect = 3e-36
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 19/146 (13%)

Query: 4   GSSPLHYAA-------------KKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEG 47
           G +PL  A+             +++   +    I     SL N+  +   T LHLAA+  
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETALHLAARYS 68

Query: 48  YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPL 105
             D  K L++   D N QD +G +PLH A   +   + +ILI +    L+ +M    TPL
Sbjct: 69  RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

Query: 106 HLAAQEGHVDMCKLLIKHQIDVNAQD 131
            LAA+     M + LI    DVNA D
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVD 154

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.8 bits (224), Expect = 3e-23
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 18/118 (15%)

Query: 33  NKMKKTPLHLAAQEG-------------YVDMCKLLIKHQIDV-NAQDIVGSSPLHYAAK 78
                TPL +A+  G                +    I     + N  D  G + LH AA+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 79  KNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQDIE 133
            ++ D AK L+          + M +TPLH A       + ++LI++   D++A+  +
Sbjct: 67  YSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.6 bits (169), Expect = 3e-15
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 17/88 (19%)

Query: 60  IDVNAQDIVGSSPLHYAA-------------KKNKLDIAKILIESNRCSLENKMKK---T 103
           +DVN +   G +PL  A+             +++   +    I     SL N+  +   T
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGET 59

Query: 104 PLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            LHLAA+    D  K L++   D N QD
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQD 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  140 bits (355), Expect = 4e-41
 Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 2/132 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 122 KHQIDVNAQDIE 133
           +HQ DVNA+   
Sbjct: 332 QHQADVNAKTKL 343

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (347), Expect = 7e-40
 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH AAK  K+ +A++L+           K   TPLH+A     +D+ KLL+     
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
            ++    G +PLH AAK+N++++A+ L++     + E+    TPLHLAAQEGH +M  LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 121 IKHQIDVNAQDIE 133
           +  Q + N  +  
Sbjct: 265 LSKQANGNLGNKS 277

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (346), Expect = 9e-40
 Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 10/134 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH A   N LDI K+L+     S         TPLH+AA++  V++ + L+++   
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
            NA+ + G +PLH AA++   ++  +L+      N     NK   TPLHL AQEGHV + 
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG---NKSGLTPLHLVAQEGHVPVA 294

Query: 118 KLLIKHQIDVNAQD 131
            +LIKH + V+A  
Sbjct: 295 DVLIKHGVMVDATT 308

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (342), Expect = 3e-39
 Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 2/132 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH A+    L I K L++     ++ N   +TPLH+AA+ G+ ++ K L++++  V
Sbjct: 14  GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+     +PLH AA+    ++ K+L+E+N   +L      TPLH+AA+EGHV+    L+
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133

Query: 122 KHQIDVNAQDIE 133
           + +        +
Sbjct: 134 EKEASQACMTKK 145

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (338), Expect = 1e-38
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             +PLH AA+    ++ K+L+E+N   +L      TPLH+AA+EG+V+    L++ +   
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLL 120
                 G +PLH AAK  K+ +A++L+           K   TPLH+A    ++D+ KLL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 121 IKHQIDVNAQDIE 133
           +      ++    
Sbjct: 199 LPRGGSPHSPAWN 211

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  126 bits (318), Expect = 9e-36
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 7/136 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH  A++  + +A +LI+         +M  TPLH+A+  G + + K L++HQ DV
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
           NA+  +G SPLH AA++   DI  +L+  N  S         TPL +A + G++ +  +L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 121 ---IKHQIDVNAQDIE 133
                    V   D  
Sbjct: 397 KVVTDETSFVLVSDKH 412

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (274), Expect = 2e-29
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
            +   TPLH+A+  G++ + K L++     N  ++   +PLH AA+    ++AK L+  N
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QN 69

Query: 93  RCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +  +    K  +TPLH AA+ GH +M KLL+++  + N   
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 5e-19
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
             I        G +PLH A+    L I K L++     ++ N   +TPLH+AA+ GH ++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 117 CKLLIKHQIDVNAQD 131
            K L++++  VNA+ 
Sbjct: 63  AKYLLQNKAKVNAKA 77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 5e-13
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLL---IKH 58
           G SPLH AA++   DI  +L+  N  S         TPL +A + GY+ +  +L      
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

Query: 59  QIDVNAQDIVGSSPLHYA 76
              V   D    S     
Sbjct: 403 TSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
            +   TPLH+A+  GH+ + K L++     N  +++
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 46

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  133 bits (337), Expect = 5e-41
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
            S  +H  A + +LD  K  +    N  +  ++   TPL  A+  G ++  + L++   D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
            +       S L  A+     DI  +L+E     N     +    TPL  A +  HV   
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCV 118

Query: 118 KLLIKHQIDVNAQD 131
           + L+    D+  + 
Sbjct: 119 EALLARGADLTTEA 132

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  128 bits (325), Expect = 4e-39
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G +PL +A+   +++  + L+E     +      K +++ L LA+  GY D+  LL++  
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHIL---AKERESALSLASTGGYTDIVGLLLERD 92

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMC 117
           +D+N  D  G +PL YA + N +   + L+ +    L  +     TP+ LA   G+  + 
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQ 151

Query: 118 KLLIKHQIDVNAQDIE 133
           +++  H + +   ++ 
Sbjct: 152 QVIENHILKLFQSNLV 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.5 bits (174), Expect = 2e-16
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL YA + N +   + L+ +    L  +     TP+ LA   GY  + +++  H + 
Sbjct: 102 GGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160

Query: 62  VNAQDIVGSSP 72
           +   ++V + P
Sbjct: 161 LFQSNLVPADP 171

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (341), Expect = 6e-41
 Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    D
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VNA D +G S LH+AA  N +D A +L+  N  + +  N  ++TPL LAA+EG  +  K+
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 120 LIKHQIDVNAQD 131
           L+ H  + +  D
Sbjct: 177 LLDHFANRDITD 188

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (322), Expect = 5e-38
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
           G + LH AA+ ++ D AK L+          + M +TPLH A       + ++LI++   
Sbjct: 25  GETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
           D++A+   G++PL  AA+     + + LI ++   +       K+ LH AA   +VD   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 119 LLIKHQIDVNAQD 131
           +L+K+  + + Q+
Sbjct: 143 VLLKNGANKDMQN 155

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (321), Expect = 5e-38
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G++PL  AA+     + + LI ++   +       K+ LH AA    VD   +L+K+  +
Sbjct: 92  GTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
            + Q+    +PL  AA++   + AK+L+  +  + +  + M + P  +A +  H D+ +L
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 120 LIKHQIDVNAQD 131
           L ++ +  + Q 
Sbjct: 210 LDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  113 bits (285), Expect = 2e-32
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 15  NKLDIAKILIESNRCSLEN---KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS 71
           +   +    I     SL N   +  +T LHLAA+    D  K L++   D N QD +G +
Sbjct: 2   DAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 72  PLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           PLH A   +   + +ILI +    L+ +M    TPL LAA+     M + LI    DVNA
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 130 QDIE 133
            D  
Sbjct: 121 VDDL 124

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 5e-27
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G S LH+AA  N +D A +L+  N  + +  N  ++TPL LAA+EG  +  K+L+ H  +
Sbjct: 125 GKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLH 106
            +  D +   P   A ++   DI ++L E       N ++   LH
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDE------YNLVRSPQLH 222

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  132 bits (334), Expect = 8e-41
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
               L  AA+  + D  +IL+ +      + +  +PLHLAAQ G+    ++L++  +  +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
           A+  V  +PLH AA +   +I ++L+  +   +   + +K T LH A +  H ++ +LLI
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 122 KHQIDVNAQD 131
           K+  DV+ Q 
Sbjct: 121 KYGADVHTQS 130

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  118 bits (299), Expect = 1e-35
 Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 10/123 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G+SPLH AA+       ++L+     S +   K+ +TPLH+AA EG+ ++ ++L+KH  D
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
           VNA+D++  + LH+A + N  ++ ++LI+     +    ++K  KT   ++   G+ D+ 
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT---QSKFCKTAFDISIDNGNEDLA 149

Query: 118 KLL 120
           ++L
Sbjct: 150 EIL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  132 bits (335), Expect = 1e-40
 Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
               +    ++      ++ +++    L        +PLH A +EG   + ++LI     
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           +N  +    +PLH AA     DI + L+   +  +   N+    PLH A   G   + + 
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 120 LIKHQIDVNAQD 131
           L+ +   V+  +
Sbjct: 124 LVANGALVSICN 135

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  128 bits (324), Expect = 6e-39
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G SPLH+A ++ +  + ++LI      N     N+   TPLHLAA  G+ D+ + L++++
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYK 95

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
            D+NA +  G+ PLHYA    +  +A+ L+ +    + C   NK  + P+  A       
Sbjct: 96  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKAPLREL 152

Query: 116 MCKLLIKHQIDVNAQDI 132
           + +   K   ++N    
Sbjct: 153 LRERAEKMGQNLNRIPY 169

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (261), Expect = 2e-29
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
             +PLH AA     DI + L+   +  +   N+    PLH A   G   + + L+ +   
Sbjct: 72  DDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGH 113
           V+  +  G  P+  A    +  + +   +  +      + + P      +G 
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQN-----LNRIPYKDTFWKGT 177

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  132 bits (334), Expect = 1e-40
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
            S  +H  A + ++      I      + +  +   TPL  AA  G + + + L+++  D
Sbjct: 3   NSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
                    S L  A  K   DI K+L+      +   +    TPL  A    HV   K+
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 120 LIKHQIDVNAQD 131
           L++   D   + 
Sbjct: 121 LLESGADPTIET 132

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  127 bits (323), Expect = 6e-39
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 10/134 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL +AA   ++ + + L+  N    +   K   + L LA  +GY D+ K+L+   +D
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
           VN  D  G +PL YA   N +   K+L+ES        +E       + LA   G+  + 
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT---IETDSGYNSMDLAVALGYRSVQ 151

Query: 118 KLLIKHQIDVNAQD 131
           +++  H + +    
Sbjct: 152 QVIESHLLKLLQNI 165

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  134 bits (339), Expect = 2e-40
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           GS+ LH AAKK   ++ + L+ + +  +  +     TP+  A +  +VD+ KLL+    D
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
           +N +D   +  LH+AA    +DIA+IL+ + +C L        +PLH+AA+E   D   L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195

Query: 120 LIKHQIDVNAQDIE 133
            +    DV  ++ E
Sbjct: 196 FLSRDSDVTLKNKE 209

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  131 bits (332), Expect = 2e-39
 Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 9/134 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             SPLH AA+   +DI  +L+++    + C   ++ ++TPL  AA+  +++  K LIK  
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMC 117
             V+ +D  GS+ LH AAKK   ++ + L+ + +  +  +     TP+  A +  HVD+ 
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

Query: 118 KLLIKHQIDVNAQD 131
           KLL+    D+N +D
Sbjct: 128 KLLLSKGSDINIRD 141

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  121 bits (307), Expect = 1e-35
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +P+ +A +   +D+ K+L+ S    +   +  +   LH AA  G VD+ ++L+  + D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
           ++A +I G SPLH AA++N+ D   + + S    +  K K  +TPL  A+    V     
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 120 LIKHQID 126
           + K   D
Sbjct: 229 MSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (263), Expect = 4e-29
 Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 4/103 (3%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
           E++ K++PLH AA+ G+VD+C +L++   +++       +PL  AA+ N L+  K LI  
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-K 65

Query: 92  NRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKH-QIDVNAQD 131
               ++ K     T LHLAA++GH ++ + L+ + Q+DVN QD
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.6 bits (195), Expect = 5e-19
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
           ++   +     SPLH AA+   +DI  +L+++    + C   ++ ++TPL  AA+  H++
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLE 58

Query: 116 MCKLLIKHQIDVNAQD 131
             K LIK    V+ +D
Sbjct: 59  AVKYLIKAGALVDPKD 74

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  133 bits (337), Expect = 3e-40
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGYVDMCKLLIKH 58
           G +PLH A  +  L     L+   +       + N +++TPLHLA       + +LL+  
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-----TPLHLAAQEGH 113
                A D  G +  H A +       + L++S      +   +     T LH+A     
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 114 VDMCKLLIKHQIDVNAQDIE 133
            +  +LL++   D++A DI+
Sbjct: 129 QETVQLLLERGADIDAVDIK 148

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  130 bits (329), Expect = 5e-39
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 9/136 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-----TPLHLAAQEGYVDMCKLLIKH 58
           G +  H A +       + L++S      +   +     T LH+A      +  +LL++ 
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138

Query: 59  QIDVNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
             D++A DI  G SPL +A + N L + ++L+  +  ++  +M    + LH A+  G + 
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLP 197

Query: 116 MCKLLIKHQIDVNAQD 131
           + + L++   D + ++
Sbjct: 198 LVRTLVRSGADSSLKN 213

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  125 bits (316), Expect = 4e-37
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH--- 58
             +PLH A       + ++L+ +   S    ++  +T  HLA +       + L+     
Sbjct: 46  RQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 59  -QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVD 115
             +D+ A++  G + LH A      +  ++L+E  ++  +++ K  ++PL  A +   + 
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

Query: 116 MCKLLIKHQIDVNAQD 131
           M +LL++H  +VNAQ 
Sbjct: 165 MVQLLLQHGANVNAQM 180

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  121 bits (306), Expect = 1e-35
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LH A      +  ++L+E  ++  +++ K  ++PL  A +   + M +LL++H  +
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VNAQ   GSS LH A+ +  L + + L+  +       N    TPL +A     +D+ + 
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 120 LIKH 123
               
Sbjct: 235 KATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 94.4 bits (236), Expect = 4e-25
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLI----KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
           ++   TPLH+A  +G +     L+    +   +++  + +  +PLH A       + ++L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 89  IESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKH----QIDVNAQD 131
           + +   S    ++  +T  HLA +       + L+       +D+ A++
Sbjct: 66  V-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 5e-18
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGHVDM 116
               D  G +PLH A  +  L     L+   +       + N +++TPLHLA       +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 117 CKLLIKHQIDVNAQD 131
            +LL+       A D
Sbjct: 62  VRLLVTAGASPMALD 76

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  129 bits (326), Expect = 2e-39
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
               L  AA+  + D  +IL+ +N   +  +     TPLHLAA  G++++ ++L+K+  D
Sbjct: 14  LGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VNA D  G +PL  AA    L+I ++L+  N   +   +    TPLHLAA  GH+++ ++
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 120 LIKHQIDVNAQD 131
           L+K+  DVNAQD
Sbjct: 132 LLKNGADVNAQD 143

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (305), Expect = 4e-36
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH AA    L+I ++L+  N   +        TPL LAA  G++++ ++L+K+  D
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VNA D+ G +PLH AA    L+I ++L+  N   +   +K  KT   ++   G+ D+ ++
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 120 LIKH 123
           L K 
Sbjct: 165 LQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.9 bits (240), Expect = 2e-26
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL  AA    L+I ++L+  N   +   +    TPLHLAA  G++++ ++L+K+  D
Sbjct: 80  GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           VNAQD  G +    +      D+A+IL + N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 7e-16
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
           +         L  AA+  + D  +IL+ +N   +  +     TPLHLAA  GH+++ ++L
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 121 IKHQIDVNAQD 131
           +K+  DVNA D
Sbjct: 67  LKNGADVNAVD 77

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (330), Expect = 3e-39
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR---CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           G +P H A     L++ K L +       +       T LHLA  + + ++ + LI++  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCK 118
            V  +D     PLH AA    L + ++L    + ++   +K   TPL  A  EGH D   
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191

Query: 119 LLI-KHQIDVNAQD 131
           LL+ K+  + +  D
Sbjct: 192 LLVEKYGAEYDLVD 205

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (307), Expect = 9e-36
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           + + PLH A  +N+    + L+ S    L   ++  + PLH +      ++   L+    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 61  DVNAQDIV---GSSPLHYAAKKNKLDIAKILIESNR---CSLENKMKKTPLHLAAQEGHV 114
           +VN  D     G +P H A     L++ K L +       +       T LHLA  +   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 115 DMCKLLIKHQIDVNAQD 131
           ++ + LI++   V  +D
Sbjct: 121 EVSQFLIENGASVRIKD 137

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (284), Expect = 2e-32
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
           G + LH A  K   ++++ LI  N  S+   +K  + PLH AA  G + + +LL    + 
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
            VN QD  G +PL +A  +   D A +L+E      +           +A  E      K
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK---K 222

Query: 119 LLIKH 123
             + +
Sbjct: 223 FFLNN 227

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (321), Expect = 3e-38
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             + L  A +++   + +IL       ++       TPL++A     +++ K LI    D
Sbjct: 6   VGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           +N Q+ +  SP  YA  + + +I   +++     L   N+     L  AA++GH+D  KL
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124

Query: 120 LIKH-QIDVNAQD 131
           L++  + D++ Q+
Sbjct: 125 LLEDGREDIDFQN 137

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (297), Expect = 1e-34
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 15/140 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH- 58
           G++PL+ A   N ++IAK LI+     N    +N +  +P   A  +G  ++   ++KH 
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDRGADINL---QNSISDSPYLYAGAQGRTEILAYMLKHA 95

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAA-----QE 111
             D+N  +  G + L  AA+K  +D  K+L+E  R  ++  N    T L  A       +
Sbjct: 96  TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155

Query: 112 GHVDMCKLLIKHQIDVNAQD 131
            + D+ KLL+++  D + +D
Sbjct: 156 LYQDIVKLLMENGADQSIKD 175

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  111 bits (280), Expect = 4e-32
 Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH-QI 60
             SP  YA  + + +I   +++     L   N+     L  AA++G++D  KLL++  + 
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 61  DVNAQDIVGSSPLHYAAKKNK-----LDIAKILIES----NRCSLENKMKKTPLHLAAQE 111
           D++ Q+  G + L  A    +      DI K+L+E+    +   +++   +T +  A Q+
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS---IKDNSGRTAMDYANQK 188

Query: 112 GHVDMCKLLIKH 123
           G+ ++ K+L ++
Sbjct: 189 GYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.8 bits (250), Expect = 2e-27
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES- 91
                  L  A Q     + ++L      V+  D  G++PL+ A   N ++IAK LI+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 92  ---NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQD 131
              N    +N +  +P   A  +G  ++   ++KH   D+N  +
Sbjct: 63  ADINL---QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.3 bits (220), Expect = 5e-23
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAA-----QEGYVDMCKLLI 56
           G + L  AA+K  +D  K+L+E  R  ++  N    T L  A       + Y D+ KLL+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 57  KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           ++  D + +D  G + + YA +K   +I+KIL + N
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.9 bits (167), Expect = 3e-15
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 65  QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIK 122
           +     + L  A +++   + +IL       ++       TPL++A     +++ K LI 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 123 HQIDVNAQD 131
              D+N Q+
Sbjct: 61  RGADINLQN 69

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  124 bits (314), Expect = 5e-38
 Identities = 50/124 (40%), Positives = 80/124 (64%), Gaps = 6/124 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PLH AA+   L++ K+L+      +  K K  +TPLHLAA+ G++++ KLL++   D
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
           VNA+D  G +PLH AA+   L++ K+L+      +  K K  +TPLHLAA+ GH+++ KL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 120 LIKH 123
           L++ 
Sbjct: 120 LLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (272), Expect = 1e-31
 Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 3/97 (3%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
           +TPLHLAA+ G++++ KLL++   DVNA+D  G +PLH AA+   L++ K+L+      +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

Query: 97  ENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             K K  +TPLHLAA+ GH+++ KLL++   DVNA+D
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  128 bits (324), Expect = 9e-38
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
            +  L  A +   +D+ + L+E   N    E +   TPLH A Q    D+ +LL++H  D
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
              +   G++P   AA    + + K+ +      N C   +    T    AA  G V   
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAFMEAAVYGKVKAL 121

Query: 118 KLLIKHQIDVNAQD 131
           K L K   +VN + 
Sbjct: 122 KFLYKRGANVNLRR 135

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  127 bits (322), Expect = 2e-37
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMC----KLLIK 57
           G++ L  AA+K  +++ KIL++     +   + M +  L  A              LL+ 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
           H  DVN +   G +PL  A +K  L + + L+E     + +     KT L LA +     
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 116 MCKLLIKHQIDVNAQDI 132
           + +LL K     +  D+
Sbjct: 268 IAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (310), Expect = 9e-36
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 19/144 (13%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G +PLH A + ++ DI ++L+             K   TP  LAA  G V + KL +   
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKG 95

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-----------SNRCSLENKMKKTPLHLA 108
            DVN  D  G +    AA   K+   K L +                   K   T L  A
Sbjct: 96  ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 109 AQEGHVDMCKLLIKHQ-IDVNAQD 131
           A++GHV++ K+L+     DVNA D
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACD 179

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  115 bits (290), Expect = 1e-32
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 23/150 (15%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G++P   AA    + + K+ +      N C   +    T    AA  G V   K L K  
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 60  IDVNAQD----------IVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHL 107
            +VN +             G++ L  AA+K  +++ KIL++     +   + M +  L  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 108 AAQEGHVDMC----KLLIKHQIDVNAQDIE 133
           A              LL+ H  DVN +   
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGER 218

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  100 bits (251), Expect = 7e-27
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI-VGSSPLHYAAKKNKLDIAKILIES 91
                  L  A Q   VD+ + L++   +VN Q+   G +PLH A + ++ DI ++L+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 92  ----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
                      K   TP  LAA  G V + KL +    DVN  D
Sbjct: 62  GADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 73.3 bits (181), Expect = 7e-17
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL  A +K  L + + L+E     + +     KT L LA +     + +LL K    
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 62  VNAQDIV 68
            +  D+V
Sbjct: 279 TDCGDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                  L  A Q   VD+ + L++   +VN Q+ E
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE 37

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  123 bits (312), Expect = 1e-37
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + LH A+ K  +   + L+++    N    ++    TPLH A   G++ + +LL++H+
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
             VN       SPLH AAK   +DI K+L+      +  N     P+     E    +  
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126

Query: 119 LLIKHQIDVNA 129
           L  K++   +A
Sbjct: 127 LPEKNE-SSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  109 bits (275), Expect = 5e-32
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           N   +T LH+A+ +G +   + L+++  D N +D  G +PLH A     L + ++L+  +
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QH 65

Query: 93  RCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           +  +        +PLH AA+ GHVD+ KLL+ +    NA +I 
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.5 bits (179), Expect = 2e-17
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVD 115
           ID    +  G + LH A+ K  +   + L+++    N    ++    TPLH A   GH+ 
Sbjct: 2   IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLK 57

Query: 116 MCKLLIKHQIDVNAQD 131
           + +LL++H+  VN   
Sbjct: 58  VVELLLQHKALVNTTG 73

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  125 bits (317), Expect = 1e-37
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             +PL  A      +    L+  N   LE+K     T L  A +   + + + L+    +
Sbjct: 35  NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VN +D  G +PL ++      +++  L+  +  ++   N   +TPL +A++ G  ++ K 
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 120 LIKHQIDVNAQD 131
           L++   D++A+D
Sbjct: 153 LLELGADISARD 164

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (301), Expect = 3e-35
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G        +K+       L         +   +TPL +A   G  +    L+++   + 
Sbjct: 8   GEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
            +DI GS+ L +A K N+L IA+ L+ S   ++   +   KTPL  +   G+ +M   L+
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121

Query: 122 KHQIDVNAQD 131
           +H  +VN ++
Sbjct: 122 EHGANVNDRN 131

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  116 bits (294), Expect = 3e-34
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           GS+ L +A K N+L IA+ L+ S   ++   +   KTPL  +   GY +M   L++H  +
Sbjct: 68  GSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VN +++ G +PL  A+K  + +I K L+      +   +    T    A   G  ++ K+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVIKI 185

Query: 120 LIKH 123
             + 
Sbjct: 186 FTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 94.0 bits (235), Expect = 2e-25
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL ++      +++  L+  +  ++   N   +TPL +A++ G  ++ K L++   D
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR 93
           ++A+D+ G +    A    + ++ KI  E  R
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.0 bits (209), Expect = 1e-21
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           +K  +    +  ++        L       N +D    +PL  A      +    L+  N
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLV-EN 57

Query: 93  RCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
              LE+K     T L  A +   + + + L+    +VN +D
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.9 bits (149), Expect = 1e-12
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
           +  D  G        +K+       L         +   +TPL +A   G  +    L++
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56

Query: 123 HQIDVNAQD 131
           +   +  +D
Sbjct: 57  NFDKLEDKD 65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (320), Expect = 1e-37
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
            S+PLH+A ++  L +   L+               + +HLAAQ G+  +   LI    D
Sbjct: 76  NSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 62  VNAQDIVGSSPLHYAAKK-NKLDIAKILIESNRCSLE---NKMKKTPLHLAAQEGHVDMC 117
           V+  D  G +PL +AA + + +D  ++L+ +   S+       K T LH A   G+  + 
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193

Query: 118 KLLIKHQIDVNAQD 131
            LL++   +V+AQ+
Sbjct: 194 SLLLEAGANVDAQN 207

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  125 bits (316), Expect = 5e-37
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
            +  +  A +    +  + L+      +   +K   T LH AA    +D+ K  I     
Sbjct: 9   STWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 62  VNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
           V+     + S+PLH+A ++  L +   L+               + +HLAAQ GH  +  
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

Query: 119 LLIKHQIDVNAQD 131
            LI    DV+  D
Sbjct: 127 YLIAKGQDVDMMD 139

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  124 bits (313), Expect = 1e-36
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
             + LH+AA  N++D+ K  I        L   +  TPLH A ++G++ M   L+K+  D
Sbjct: 42  NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGH-VDM 116
            +  D  G S +H AA+     I   LI      +     ++   TPL  AA   H VD 
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDP 158

Query: 117 CKLLIKHQIDVNAQD 131
            +LL+   + VN  D
Sbjct: 159 TRLLLTFNVSVNLGD 173

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (289), Expect = 5e-33
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGY-VDMCKLLIKH 58
           G S +H AA+     I   LI      +     ++   TPL  AA   + VD  +LL+  
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 59  QIDVNAQD-IVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVD 115
            + VN  D    ++ LH+A       +  +L+     +++ +    ++ L LA Q  +V 
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDAQNIKGESALDLAKQRKNVW 224

Query: 116 MCKLLIKHQIDVNAQD 131
           M   L + +      +
Sbjct: 225 MINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  108 bits (272), Expect = 2e-30
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES- 91
           +      +  A Q G  + C+ L++   DV   D    + LH+AA  N++D+ K  I   
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65

Query: 92  -NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                L   +  TPLH A ++GH+ M   L+K+  D +  D E
Sbjct: 66  AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 7e-17
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           +   D   +  +  A +    +  + L+      +   +K   T LH AA    +D+ K 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 120 LIKHQIDVNAQDIE 133
            I     V+    +
Sbjct: 61  YISKGAIVDQLGGD 74

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (323), Expect = 1e-37
 Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             +PL  A      D   +L+  +  S++      +P+H AA+ G+V+    LI +  ++
Sbjct: 125 WHTPLFNACVSGSWDCVNLLL-QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCK 118
           + +     +PL+ A +  +    K L+ES    N+     K + +PLH   +    ++  
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVVRTASEELAC 239

Query: 119 LLIKHQIDVNAQDIE 133
           LL+    D  A++ E
Sbjct: 240 LLMDFGADTQAKNAE 254

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (288), Expect = 2e-32
 Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           GS P           ++  L+       +     +P+H AA  G+    + LI     VN
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLMG------DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLI 121
                  SPLH A     L   KIL+  +   +        TPL  A   G  D   LL+
Sbjct: 87  IITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145

Query: 122 KHQIDVNAQD 131
           +H   V  + 
Sbjct: 146 QHGASVQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (287), Expect = 3e-32
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
            +SP+H AA++  ++    LI +   ++++K+    TPL+LA +       K L++   D
Sbjct: 157 LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
           VN       SPLH   +    ++A +L+       + K    K P+ L   E  +     
Sbjct: 216 VNQGKG-QDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPLAQL-F 272

Query: 120 LIKHQIDVNA 129
           L +    +  
Sbjct: 273 LEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.2 bits (217), Expect = 5e-22
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 16/131 (12%)

Query: 11  AAKKNKLDIAKILIE------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
            +  +    +  L+       S            P       G       L+ + +  +A
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56

Query: 65  QDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIK 122
                 SP+H AA        + LI S   ++        +PLH A   GH+   K+L+K
Sbjct: 57  VS--DWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 123 HQIDVNAQDIE 133
           H   VN    +
Sbjct: 114 HGAQVNGVTAD 124

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.9 bits (206), Expect = 2e-20
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 42  LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK 101
           + +   +      L+     + + D      +  +      D   I + SN    +    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
            +P+H AA  GH    + LI     VN    +
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (313), Expect = 2e-37
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
               L  AA +  +   + L+       +   +  KT L +    G   +   L+K    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
            N QD  G+SP+H AA+   LD  K+L+E     N     +     P+HLA QEGH  + 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTAVV 117

Query: 118 KLLIKHQIDVNAQD 131
             L     D++ +D
Sbjct: 118 SFLAAE-SDLHRRD 130

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  118 bits (299), Expect = 2e-35
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + L          IA  L++     N     +    +P+H AA+ G++D  K+L++H 
Sbjct: 36  GKTALQVMMF-GSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFLDTLKVLVEHG 91

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
            DVN  D  G+ P+H A ++    +   L   +     +    TPL LA Q G  D+  +
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151

Query: 120 LIKH 123
           L  H
Sbjct: 152 LQGH 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  126 bits (318), Expect = 2e-37
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 4   GSSPLHYAAKKN----KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIK 57
           G S LH A         +++ + +   +   L   N +++TPLHLA      ++ + L+ 
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE-------SNRCSLENKMKKTPLHLAAQ 110
              D   +D  G++PLH A ++  L    +L +        +     N    T LHLA+ 
Sbjct: 67  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126

Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
            G++ + +LL+    DVNAQ+
Sbjct: 127 HGYLGIVELLVSLGADVNAQE 147

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (315), Expect = 5e-37
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE-------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLI 56
           G++PLH A ++  L    +L +        +     N    T LHLA+  GY+ + +LL+
Sbjct: 78  GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137

Query: 57  KHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGH 113
               DVNAQ+   G + LH A      D+  +L+      +        +P  L      
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPS 196

Query: 114 VDMCKLLIKHQIDVNAQDIEA 134
             + + L +  ++      E+
Sbjct: 197 TRIQQQLGQLTLENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (312), Expect = 2e-36
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             +PLH A   N+ +IA+ L+    C  E +     TPLHLA ++G +    +L +    
Sbjct: 45  QQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103

Query: 62  ------VNAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGH 113
                 + A +  G + LH A+    L I ++L+    +  + E    +T LHLA    +
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163

Query: 114 VDMCKLLIKHQIDVNAQD 131
            D+  LL+K   DVN   
Sbjct: 164 PDLVSLLLKCGADVNRVT 181

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  100 bits (252), Expect = 1e-27
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LH A+    L I ++L+    +  + E    +T LHLA      D+  LL+K   D
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGHVDM 116
           VN     G SP      +    I + L +    +L+     +       +    + 
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 94.9 bits (237), Expect = 3e-25
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 33  NKMKKTPLHLAAQEGY----VDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
            +   + LHLA         +++ + +      +N Q+ +  +PLH A   N+ +IA+ L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 89  IESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVN-AQDIEA 134
           +    C  E +     TPLHLA ++G +    +L +     +    ++A
Sbjct: 65  L-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 77.6 bits (192), Expect = 1e-18
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LH A      D+  +L+      +        +P  L        + + L +  ++
Sbjct: 151 GRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIA 85
                        Y  +    +  
Sbjct: 210 NLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 57  KHQIDVNAQDIVGSSPLHYAAKKN----KLDIAKILIESNRCSLE--NKMKKTPLHLAAQ 110
           K Q+  +     G S LH A         +++ + +   +   L   N +++TPLHLA  
Sbjct: 1   KQQLTED-----GDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVI 54

Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
               ++ + L+    D   +D
Sbjct: 55  TNQPEIAEALLGAGCDPELRD 75

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (316), Expect = 2e-37
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
             +       K +  +    I SN  + + +    PLH AA+ G +   +  + +++ VN
Sbjct: 45  SDTNWWKGTSKGRTGL----IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN 100

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLI 121
             D  GS+ L++A      DI ++L       L   NK+  T LH AA +G+ D+ +LL+
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 122 KHQIDVNAQDIE 133
                 + ++IE
Sbjct: 161 AKGARTDLRNIE 172

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  123 bits (310), Expect = 2e-36
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQ-I 60
             +PLH AAK+  L   +  +  NR  +    K   T L+ A   G+ D+ ++L     I
Sbjct: 73  IDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
           ++N Q+ +G + LH AA K   DI ++L+    R  L N  KK    +A       + K 
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191

Query: 120 LIKHQIDVNAQDIEA 134
                      + E 
Sbjct: 192 KQGTDAVRTLSNAED 206

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  106 bits (268), Expect = 4e-30
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 3/115 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           GS+ L++A      DI ++L       L   NK+  T LH AA +GY D+ +LL+     
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVD 115
            + ++I        A       + K    ++   +L N         +  E H  
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (250), Expect = 2e-27
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G   +  A    +      L            M  T       +G     +  +     V
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLL 120
             Q     +PLH AAK+  L   +  +  NR  +    K   T L+ A   GH D+ ++L
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 121 IKHQ-IDVNAQD 131
                I++N Q+
Sbjct: 126 FTQPNIELNQQN 137

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.7 bits (231), Expect = 1e-24
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
            K  +  +  A           L   + D+     +  +       K +  +    I SN
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL----IPSN 64

Query: 93  RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             + + +    PLH AA+ G++   +  + +++ VN  D
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 3e-37
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS------LENKMKKTPLHLAAQEGYVDMCKLLIK 57
             +PL  A +    +   +++++            NK   + LH A    + D+    ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL--------------ENKMKKT 103
             IDVN +D   + PL+ + +   + + K L++     L              +  +   
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD 292

Query: 104 PLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            +  AA     ++ +LL +   +V    
Sbjct: 293 FVPAAADPSKQEVLQLLQEKLDEVVRSL 320

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (315), Expect = 8e-36
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG--YVDMCKLLIKHQI 60
            G  P     + ++ ++ +I          +   +T LH     G  Y++M K+L++   
Sbjct: 110 RGQMPESLLNECDEREVNEIGSHVK-----HCKGQTALHWCVGLGPEYLEMIKILVQLGA 164

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS------LENKMKKTPLHLAAQEGHV 114
              A+D    +PL  A +    +   +++++            NK   + LH A      
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

Query: 115 DMCKLLIKHQIDVNAQD 131
           D+    ++  IDVN +D
Sbjct: 225 DVAMRFVEMGIDVNMED 241

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (304), Expect = 3e-34
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 19/146 (13%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQ-- 59
           G+S LH+A   N  D+A   +      +   +     PL+L+ +   V + K L++    
Sbjct: 211 GNSHLHWAILINWEDVAMRFV-EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

Query: 60  -----------IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLH 106
                        V    +V    +  AA  +K ++ ++L       +            
Sbjct: 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-EKLDEVVRSLNTGAGGAV 328

Query: 107 LAAQEGHVDMCKLLIKHQIDVNAQDI 132
              ++    + ++ +     V  +  
Sbjct: 329 KRKKKAAPAVKRMKLAPSAPVRTRSR 354

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  112 bits (282), Expect = 7e-31
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
               +H AA+K + D  + LI     S    N+   T LHLA + G VD  K L      
Sbjct: 20  NMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
            +     G  P+H A   NK D+   L+E        +  + P  L  +    ++ +   
Sbjct: 79  HSLWH--GQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNECDEREVNE--- 128

Query: 122 KHQIDVNAQDIE 133
              I  + +  +
Sbjct: 129 ---IGSHVKHCK 137

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  107 bits (269), Expect = 5e-29
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 21/137 (15%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G  P+H A   NK D+   L+E        +  + P  L  +    ++ +      I  +
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNECDEREVNE------IGSH 132

Query: 64  AQDIVGSSPLHYAAKKNK--LDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKL 119
            +   G + LH+        L++ KIL+     S   K K  +TPL  A +  + +   L
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILV-QLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 120 LI-----KHQIDVNAQD 131
           ++     K  + ++  +
Sbjct: 192 MMDTVPSKSSLRLDYAN 208

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
            +      +H+AA++G  D  + LI+  +    Q+  G + LH A K   +D AK L  S
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA-S 74

Query: 92  NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
                     + P+HLA      D+   L++   +  
Sbjct: 75  VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 96.9 bits (242), Expect = 3e-25
 Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 21/123 (17%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSL--------------ENKMKKTPLHLAAQEGYV 49
            + PL+ + +   + + K L++     L              +  +    +  AA     
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303

Query: 50  DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPL 105
           ++ +LL +   +V      G+       KK    + ++ +            ++ +    
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT---RSRSRARSS 360

Query: 106 HLA 108
            ++
Sbjct: 361 AVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 80.3 bits (199), Expect = 5e-19
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 53  KLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQ 110
            +    +++    D      +H AA+K + D  + LI     S    N+   T LHLA +
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACK 62

Query: 111 EGHVDMCKLLIKHQIDVNAQD 131
            G VD  K L       +   
Sbjct: 63  FGCVDTAKYLASVGEVHSLWH 83

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  115 bits (291), Expect = 2e-33
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 21/150 (14%)

Query: 3   VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           +  SPL  AAK+N +     L++   C +     M +T LH+AA    ++   +L++   
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 61  DV-----NAQDIVGSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMK 101
           ++      ++   G + LH A     +++ + L+                 R        
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           + PL  AA  G  ++ +LLI+H  D+ AQD
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQD 151

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (277), Expect = 2e-31
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE------SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIK 57
           G + LH AA  + L+ A +L+E          + E    +T LH+A     V++ + L+ 
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 58  HQIDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIES----NRCSLENKM 100
               V+A+                G  PL +AA     +I ++LIE          ++ +
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA---QDSL 153

Query: 101 KKTPLHLAAQEGHVD----MCKLLIKHQIDVNAQDIEA 134
             T LH+   + +      M  LL+ +    + + +E 
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  102 bits (257), Expect = 2e-28
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 37  KTPLHLAAQEGYVD-MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE----- 90
           ++PL LAA+E  V  + KLL     +V+ +  +G + LH AA  + L+ A +L+E     
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 91  -SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                + E    +T LH+A    +V++ + L+     V+A+   
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  124 bits (315), Expect = 2e-36
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G S  +YA   N + +   L+ +          + PLH AA      + K+L+   +D +
Sbjct: 31  GHSASYYAIADNNVRLVCTLL-NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
             D  G++ L+YA     +   K+ ++             KT  + A     V +    +
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 122 KHQIDVNA 129
                   
Sbjct: 150 SEIPSTFD 157

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (301), Expect = 2e-34
 Identities = 16/131 (12%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
             +  ++A   N + I    +     + +  +  + +H+  + G+VDM  LL+ +    N
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 64  AQDIVGSSP-LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIK 122
             + +   P +  A     +++ + L      ++      +           ++ K++I+
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALF-KYDINIY-----SANLENVLLDDAEIAKMIIE 242

Query: 123 HQIDVNAQDIE 133
             ++  +    
Sbjct: 243 KHVEYKSDSYT 253

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (299), Expect = 5e-34
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G++ L+YA     +   K+ ++             KT  + A     V +    +   I 
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IP 153

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTP-LHLAAQEGHVDMCK 118
                 +  S +H   K   +D+  +L+     S    N +   P + LA     ++M +
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 119 LLIKHQIDVNAQDIEA 134
            L K+ I++ + ++E 
Sbjct: 213 ALFKYDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (271), Expect = 7e-30
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 8   LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
           L          +   L   +     +    +  + A  +  V +   L+      N  + 
Sbjct: 4   LSRINTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 68  VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
               PLH AA      I KIL+  +       +    T L+ A   G++   KL +K   
Sbjct: 62  -NEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 126 DVNAQD 131
            +    
Sbjct: 120 RLMFYG 125

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 9e-17
 Identities = 7/94 (7%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 7   PLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
            +  A     +++ + L      ++      +           ++ K++I+  ++  +  
Sbjct: 198 DIKLAIDNKDIEMLQALF-KYDINIY-----SANLENVLLDDAEIAKMIIEKHVEYKSDS 251

Query: 67  IVGSSPLHYAAKKNKLDIAKILIE--SNRCSLEN 98
                 +    K +++      +      C  +N
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  120 bits (304), Expect = 4e-36
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             + L  AA +  L+    L+  N  ++  +    +T L +    G  ++ + L+    +
Sbjct: 5   WGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
            + +D  G + +H AA+   LD  + L+   +  +   +     PLHLAA+EGH+ + + 
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 120 LIKH-QIDVNAQD 131
           L+KH   +V  ++
Sbjct: 122 LVKHTASNVGHRN 134

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (297), Expect = 5e-35
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + L      N  +IA+ L+      +    +++     +H AA+ G++D  + L++ Q
Sbjct: 38  GRTALQVMKLGNP-EIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMC 117
            DVN +D  G+ PLH AAK+  L + + L++    ++   N    T   LA   G  ++ 
Sbjct: 94  ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 118 KLLIKH 123
            L+  +
Sbjct: 154 SLMQAN 159

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 5e-36
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
             +P   AA+K        L+E       ++  +T L   A  G     +LL +   D++
Sbjct: 44  YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 64  AQDI-VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
            +D+  G + LH AA   + ++ + L+E      +E++   T L LA +          +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

Query: 122 KHQIDVNAQDI 132
           +    +  + +
Sbjct: 164 QFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (294), Expect = 2e-34
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G+       K                +      +TP   AA++        L+    DV+
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIA--ADVVSEYETPWWTAARKADEQALSQLL-EDRDVD 70

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           A D  G + L + A        ++L E+  +    + +   T LH+AA     ++ + L+
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 122 KHQIDVNAQD 131
           +   D+  +D
Sbjct: 131 ELGADIEVED 140

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.0 bits (240), Expect = 2e-26
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 18/122 (14%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + L + A        ++L E+  +    + +   T LH+AA     ++ + L++   D
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           +  +D  G + L  A +  K       +                    + G   +  +L 
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPM----------------QFGRRIGLEKVINVLE 179

Query: 122 KH 123
             
Sbjct: 180 GQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.6 bits (231), Expect = 7e-25
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
               +  ++G+            DV ++     +P   AA+K        L+E       
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRDVDAV 72

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           ++  +T L   A  G     +LL +   D++ +D+ 
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.2 bits (147), Expect = 2e-12
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKL 119
           I  +     G+       K                +      +TP   AA++        
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA--ADVVSEYETPWWTAARKADEQALSQ 62

Query: 120 LIKHQIDVNAQD 131
           L+    DV+A D
Sbjct: 63  LL-EDRDVDAVD 73

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (313), Expect = 2e-35
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
               L  A   N+  +  +L   N  C   +  K TPLHLAA    V + +LL++H  DV
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLL 120
           +A+D  G  PLH A      ++ ++L+  +   +   +  + TPLH AA +  V++C LL
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 121 IKHQIDVNAQD 131
           + H  D    +
Sbjct: 144 LSHGADPTLVN 154

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  110 bits (278), Expect = 2e-30
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 4   GSSPLHYAAKK---NKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKH 58
             + LH A       +  +A++L+     ++  K K   TPLH+AA+  + D+ ++L KH
Sbjct: 211 HETALHCAVASLHPKRKQVAELLL-RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC 117
              +NA D +G + LH AA    L   ++L+      S+ +    T   +       +  
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAV 324

Query: 118 KLLIKHQIDVNAQDIE 133
           + ++     +   D++
Sbjct: 325 QQILSESTPMRTSDVD 340

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (276), Expect = 4e-30
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G  PLH A      ++ ++L+  +   +   +  + TPLH AA +  V++C LL+ H  D
Sbjct: 91  GLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
               +  G S +  A      +      +            + L  AA+E  +   K  +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFK----------GHSLLQ-AAREADLAKVKKTL 198

Query: 122 KHQIDVNAQD 131
             +I    Q 
Sbjct: 199 ALEIINFKQP 208

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (262), Expect = 4e-28
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
           G S +  A      +      +            + L  A +     + K L    I   
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK----------GHSLLQAAREADLAKVKKTLALE-IINF 205

Query: 64  AQDIVGSSPLHYAAKK---NKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
            Q     + LH A       +  +A++L+     ++  K K   TPLH+AA+  H D+ +
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLL-RKGANVNEKNKDFMTPLHVAAERAHNDVME 264

Query: 119 LLIKHQIDVNAQD 131
           +L KH   +NA D
Sbjct: 265 VLHKHGAKMNALD 277

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (260), Expect = 8e-28
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 19  IAKILIESN-RCSLENKMKKTPLHLAAQEG-YVDMCKLLIKHQIDVNAQDIVGSSPLHYA 76
            A  L + + +  L  + KK  L  AA+ G    +  LL    ++ +A D   S+PLH A
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 77  AKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           A  N++ I ++L+  +   +  K K    PLH A   GH ++ +LL+KH   VNA D
Sbjct: 66  AGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 2e-24
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             +PLH AA++   D+ ++L +     N     + + +T LH AA  G++  C+LL+ + 
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNAL---DSLGQTALHRAALAGHLQTCRLLLSYG 303

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEG 112
            D +   + G +           +  + ++ S    +        L  A++ G
Sbjct: 304 SDPSIISLQGFTAAQMGN-----EAVQQIL-SESTPMRTSDVDYRLLEASKAG 350

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  117 bits (297), Expect = 2e-35
 Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
               L  AA+  + D  +IL+ +N   +   ++   TPL+LA   G++++ ++L+K+  D
Sbjct: 14  LGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
           VNA D +G +PLH AA    L+IA++L++     N    ++K  KT   ++   G+ D+ 
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA---QDKFGKTAFDISIGNGNEDLA 129

Query: 118 KLLIKH 123
           ++L K 
Sbjct: 130 EILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  102 bits (258), Expect = 2e-29
 Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
             L  AA+ G  D  ++L+ +  DVNA+D  G +PL+ A     L+I ++L+  N   + 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVN 74

Query: 98  --NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             + +  TPLHLAA  GH+++ ++L+KH  DVNAQD
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.1 bits (238), Expect = 2e-26
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL+ A     L+I ++L+  N   +   + +  TPLHLAA  G++++ ++L+KH  D
Sbjct: 47  GLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           VNAQD  G +    +      D+A+IL + N
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  118 bits (298), Expect = 3e-35
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
            +  L  AA + +++  + L+     +    N   + P+ +    G   + +LL+ H  +
Sbjct: 12  SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE 69

Query: 62  VNAQDIVGS-SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKL 119
            N  D      P+H AA++  LD   +L  +  R  + +   + P+ LA + GH D+ + 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 120 LIKHQIDVNAQD 131
           L          +
Sbjct: 130 LRAAAGGTRGSN 141

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (256), Expect = 5e-29
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G  P+          +A++L+  +              P+H AA+EG++D   +L +   
Sbjct: 45  GRRPIQVMMM-GSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
            ++ +D  G  P+  A +    D+A+ L  +               + A EG  D
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAA----GGTRGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 97.5 bits (244), Expect = 4e-27
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
             +     L  AA  G V+  + L++   + NA +  G  P+          +A++L+  
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-L 65

Query: 92  NRCSLENKMKK---TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +              P+H AA+EG +D   +L +    ++ +D
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.0 bits (188), Expect = 1e-18
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 6   SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
            P+H AA++  LD   +L  +  R  + +   + P+ LA + G+ D+ + L         
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139

Query: 65  QDIVGSSPLHYAAKKNKLDIA 85
            +          A +   DI 
Sbjct: 140 SN-----HARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 66.0 bits (162), Expect = 6e-15
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 56  IKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGH 113
           ++     + +    +  L  AA + +++  + L+     +    N   + P+ +    G 
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMMM-GS 56

Query: 114 VDMCKLLIKHQIDVNAQD 131
             + +LL+ H  + N  D
Sbjct: 57  ARVAELLLLHGAEPNCAD 74

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  120 bits (304), Expect = 9e-35
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
             +P    ++ N  +  +   E  R  LE  N    TPLH+A      +M +LL     D
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 62  VNAQDI-VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
           +N  +   G +PLH A +     + ++L+         +M   +TPL  A    +  + +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 119 LLIKHQIDVNAQD 131
           LL  H        
Sbjct: 243 LLRAHGAPEPEDG 255

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (300), Expect = 3e-34
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G +PLH A      ++ ++L ++    N+   E    +TPLHLA +     + +LL+K  
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
            D  A+   G +PL  A  +    +A++L         +   K +P   +  +   D   
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275

Query: 119 LLIKH 123
              ++
Sbjct: 276 EGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  118 bits (297), Expect = 9e-34
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 21/147 (14%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPLHLAAQE-GY 48
           G + LH A +      A +L++              +            P  + +Q    
Sbjct: 78  GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 49  VDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTP 104
            +        ++ + A++  G +PLH A      ++ ++L ++    N+   E    +TP
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTP 195

Query: 105 LHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           LHLA +     + +LL+K   D  A+ 
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARM 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (295), Expect = 2e-33
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE----SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + LH A           L+          L+N + +T LHLAA  G     + L    
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPL 105
             V   +  G + LH A +      A +L++              +            P 
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 106 HLAAQE-GHVDMCKLLIKHQIDVNAQDIE 133
            + +Q     +        ++ + A++ +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYD 157

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  108 bits (272), Expect = 4e-30
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + LH AA   +    + L  +           +   T LHLA +        +L++ +
Sbjct: 45  GQTALHLAAILGEASTVEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 60  IDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTP 104
                                   +P    ++ N  +  +   E  R  LE  N    TP
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 105 LHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           LH+A      +M +LL     D+N  +  
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPT 190

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.2 bits (248), Expect = 1e-26
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKH---QIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
            +   T LHLA    +      L+        ++ Q+ +G + LH AA   +    + L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 90  ES----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
            +           +   T LHLA +        +L++ +        +
Sbjct: 66  AAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIE----SNRCSLENKMKKTPLHLAAQEGHVDMC 117
                  G + LH A           L+          L+N + +T LHLAA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 118 KLLIKHQIDVNAQD 131
           + L      V   +
Sbjct: 62  EKLYAAGAGVLVAE 75

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (297), Expect = 1e-33
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             +    A      +    L+E     N     N    T LH A  +  VDM K L+++ 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMC 117
            ++N  D  G  PLH AA    LDIA+ LI S    +   N    TPL +A +E   ++ 
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 118 KLLI-KHQIDVNAQDIEA 134
           +  + +  +D+ A   E 
Sbjct: 156 QNEVNRQGVDIEAARKEE 173

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (285), Expect = 8e-32
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGYVDMCKLLIKHQIDV 62
                            +  +   R   + K         A   G  +    L++   D+
Sbjct: 8   QKRNEQLKRWIGSETDLEPPV-VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMCK 118
           N  ++ G + LH A   + +D+ K L+E+    N+    +     PLH AA  G++D+ +
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNEGWIPLHAAASCGYLDIAE 123

Query: 119 LLIKHQIDVNAQD 131
            LI     V A +
Sbjct: 124 YLISQGAHVGAVN 136

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 3e-31
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
             +      +    D  + L  S   +     K   T LH+AA +GY ++ KLLI+ + D
Sbjct: 166 IEAARKEEERIMLRDARQWLN-SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKL 119
           VN +D  G +PLH AA   K +  +IL+  N C +E  NK+ +T   +A ++    + +L
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 120 LIKHQIDVNAQD 131
             K  +  + + 
Sbjct: 284 QKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  106 bits (267), Expect = 3e-29
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLI-KHQI 60
           G  PLH AA    LDIA+ LI S    +   N    TPL +A +E   ++ +  + +  +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCK 118
           D+ A             +    D  + L  S   +     K   T LH+AA +G+ ++ K
Sbjct: 165 DIEA-------ARKEEERIMLRDARQWLN-SGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 119 LLIKHQIDVNAQD 131
           LLI+ + DVN +D
Sbjct: 217 LLIQARYDVNIKD 229

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.7 bits (234), Expect = 2e-24
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 31  LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           + +  +K    L    G     +  +  +     +     +    A      +    L+E
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE 61

Query: 91  S----NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                N     N    T LH A  + +VDM K L+++  ++N  D E
Sbjct: 62  RGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 2/71 (2%)

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK-TPLHLAAQEGHVDMCKLL 120
           +   D                   +  +   R   + K         A   G  +    L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPV-VKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 121 IKHQIDVNAQD 131
           ++   D+N  +
Sbjct: 60  LERGADINYAN 70

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  112 bits (284), Expect = 2e-33
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             + L  AA + +++  + L+E+    N     N+  + P+ +    G   + +LL+ H 
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAGADPNAL---NRFGRRPIQVMMM-GSAQVAELLLLHG 67

Query: 60  IDVNAQDIVGS-SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC 117
            + N  D      P+H AA++  LD   +L  +  R  + +   + P+ LA ++GH D+ 
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 118 KLLIKH 123
           + L   
Sbjct: 128 RYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 99.8 bits (250), Expect = 3e-28
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
                  L  AA  G V+  + L++   D NA +  G  P+          +A++L+  +
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL-LH 66

Query: 93  RCSLENKMKK---TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
                         P+H AA+EG +D   +L +    ++  D
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-17
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDM 116
            ++       + L  AA + +++  + L+E+    N     N+  + P+ +    G   +
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL---NRFGRRPIQVMMM-GSAQV 59

Query: 117 CKLLIKHQIDVNAQD 131
            +LL+ H  + N  D
Sbjct: 60  AELLLLHGAEPNCAD 74

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (299), Expect = 2e-33
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRC--SLENKMK--KTPLHLAAQEGY---VDMCKLLI 56
             S LH AA      +   ++ S +    +E   +   T L + A       V   KLL+
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258

Query: 57  KHQIDVN--------AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLH 106
           +    V+        ++   G + LHYAA+ + + I K L+     + +  ++  KTP+ 
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318

Query: 107 LAAQEGHVDMCKLLIKHQIDVNAQD 131
           LAAQEG +++   LI+    V A D
Sbjct: 319 LAAQEGRIEVVMYLIQQGASVEAVD 343

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (290), Expect = 4e-32
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 16/144 (11%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSL---------ENKMKKTPLHLAAQEGYVDMCKL 54
             + LH+ A  +  + ++ LI                 +  + TPL LA       +   
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 55  LIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC--SLENKMK--KTPLHLAAQ 110
           L+K   D    +    S LH AA      +   ++ S +    +E   +   T L + A 
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 111 EGH---VDMCKLLIKHQIDVNAQD 131
                 V   KLL++    V+   
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDG 268

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  113 bits (284), Expect = 3e-31
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 4   GSSPLHYAAKKNKLD---IAKILIE---------SNRCSLENKMKKTPLHLAAQEGYVDM 51
           G + L   A     D    AK+L+E         + R   E    +T LH AAQ   + +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 52  CKLLIKHQ-IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLA 108
            K L+  +  + + QD  G +P+  AA++ ++++   LI     S+E  +    T   LA
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLA 353

Query: 109 AQEGHVDMCKLLIKHQIDV 127
               H ++  +  + + + 
Sbjct: 354 QANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.6 bits (236), Expect = 2e-24
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 17/136 (12%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
               L  A+    +   +  ++             P       G   +      +     
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHY--------SLYPNPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
             +      LH  A      I + +   +   ++ +  +T LH  A     +  + LI H
Sbjct: 89  EPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 147

Query: 124 QI--------DVNAQD 131
           +         DVNA D
Sbjct: 148 EAKECIAAGADVNAMD 163

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  115 bits (289), Expect = 4e-33
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
               L  AA   +L++ +  ++     ++    N+   T LH A       +   LI   
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSIVDFLITAG 77

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAA--QEGHVD 115
            +VN+ D  G +PLH AA  N   I   L++      +       T        +EG+ D
Sbjct: 78  ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 116 MCKLLIKHQIDVNAQD 131
               L   +  +   +
Sbjct: 138 CATYLADVEQSMGLMN 153

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  100 bits (251), Expect = 1e-27
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----N 92
              L  AA  G +++ +  +K   D +  +  G + LH A       I   LI +    N
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 93  RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                +    TPLH AA      +C  L++H   + A  + 
Sbjct: 82  SP---DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.5 bits (215), Expect = 4e-22
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAA--QEGYVDMCKLLIKHQ 59
           G +PLH AA  N   I   L++      +       T        +EGY D    L   +
Sbjct: 87  GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
             +   +      L   + +   D        +      +  ++T    AA  G    
Sbjct: 147 QSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  110 bits (277), Expect = 2e-32
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGYVDMCKLLIKHQID 61
                 +A K   LD  K  + +    +   ++    PLH AA  G +++ + L+    D
Sbjct: 7   CDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDMC 117
           +NA D    +PL  A  +  +   K+L+                 T       +    + 
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTAFEATDNQAIKALL 122

Query: 118 K 118
           +
Sbjct: 123 Q 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  106 bits (268), Expect = 4e-31
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
             M       A + G +D  K  +    DVN     G  PLHYAA   +L+I + L+   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LK 62

Query: 93  RCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
              +    K   TPL  A  EGHV   KLL+    D   + 
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  108 bits (273), Expect = 5e-32
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 31  LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
             +K   TPLH AA+ G+ +  K L+    DVNA+   G++PLH AAK    +I K+L+ 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL- 62

Query: 91  SNRCSLENKMK--KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +    +  + K   TP HLA + GH ++ KLL     DVNA+ 
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (251), Expect = 9e-29
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G++PLH AAK    +  K L+ S    +  + K   TPLHLAA+ G+ ++ KLL+    D
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLH 106
           VNA+   G++P H A K    +I K+L       N     +       H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR---SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.0 bits (196), Expect = 2e-20
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
           G++PLH AAK    +I K+L+ +    +  + K   TP HLA + G+ ++ KLL     D
Sbjct: 42  GNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

Query: 62  VNAQDIVGSSPLHY 75
           VNA+    S   H+
Sbjct: 101 VNARSWGSSHHHHH 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (281), Expect = 9e-32
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 27/157 (17%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIKHQI 60
           G + L + A        ++L       L+++  +   T LH+AA     ++ + L++   
Sbjct: 77  GRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILI-----------------------ESNRCSLE 97
           D+  +D  G + L  A +  K       +                       E +    +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
               K   +L   +   D   +   H  +  A+D E 
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
               +  ++G+            DV ++     +P   AA+K        L+E       
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRDVDAV 73

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           ++  +T L   A  G     +LL +   D++ +D+ 
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  106 bits (267), Expect = 2e-30
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 15/143 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVD------MCKLLI 56
               L     + +  I+  LI          K   T      Q G  D      +CK+ +
Sbjct: 42  LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 57  KHQIDVNAQDIVGSSPLHYAAKKNKLD------IAKILIESNRCSLE--NKMKKTPLHLA 108
           +   D+ A        +        +D      + K++   +   L   +K   T L   
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161

Query: 109 AQEGHVDMCKLLIKHQIDVNAQD 131
            +       K++  +    N ++
Sbjct: 162 KRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 3e-25
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 24/147 (16%)

Query: 6   SPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLA----AQEGYVDMCKLLIKHQID 61
             +  AA     +    L E      E+ +K   L+        E    +   LI    D
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 62  VNAQDIVGSSPLHYAAKKNKLDI------AKILIES----NRCSLENKMKKTPLHLAAQE 111
           + ++   G++      +    DI       KI +E            K  K  +      
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YKPYKIVVFKNIFN 124

Query: 112 GHVDMCK-------LLIKHQIDVNAQD 131
             VD  +       +  +  + +  +D
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKD 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (268), Expect = 4e-30
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
                + A      ++ + ++ +++      ++  +T LH A   G+ ++ + L++  + 
Sbjct: 7   NIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           VN +D  G SPLH AA     +I K L+      +  N+   TPLH AA +   ++  +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 121 IKHQIDVNAQD 131
           ++   + +A+D
Sbjct: 126 LEGGANPDAKD 136

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.2 bits (234), Expect = 4e-25
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G SPLH AA     +I K L+      +  N+   TPLH AA +   ++  +L++   + 
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           +A+D   ++ +H AA K  L +  IL+      ++++    TPLHLA  E  V+  K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 122 KHQIDVNAQD 131
                +  ++
Sbjct: 193 TQGASIYIEN 202

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.5 bits (214), Expect = 4e-22
 Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLHYAA KN+ +IA +L+E       ++    T +H AA +G + M  +L+ ++   
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N QD  G++PLH A  + +++ AK L+       +ENK +KTPL +A   G + +    +
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRL 223

Query: 122 KHQIDVN 128
               + +
Sbjct: 224 AEGEEAS 230

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  100 bits (253), Expect = 3e-29
 Identities = 39/89 (43%), Positives = 62/89 (69%), Gaps = 3/89 (3%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSL 96
           +TPLHLAA+ G++++ KLL++   DVNA+D  G +PLH AA+   L++ K+L+      +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

Query: 97  ENKMK--KTPLHLAAQEGHVDMCKLLIKH 123
             K K  +TPLHLAA+ GH+++ KLL++ 
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.5 bits (239), Expect = 4e-27
 Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 4  GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
          G +PLH AA+   L++ K+L+      +  K K  +TPLHLAA+ G++++ KLL++   D
Sbjct: 2  GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 62 VNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
          VNA+D  G +PLH AA+   L++ K+L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.5 bits (143), Expect = 1e-12
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 4  GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKH 58
          G +PLH AA+   L++ K+L+      +  K K  +TPLHLAA+ G++++ KLL++ 
Sbjct: 35 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 1e-08
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +TPLHLAA+ GH+++ KLL++   DVNA+D
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKD 32

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 1e-27
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE--------------SNRCSLENKMKKTPLHLAAQEGYV 49
           G S LH A +K  L   K+L+E                         + PL LAA     
Sbjct: 90  GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149

Query: 50  DMCKLLIKH---QIDVNAQDIVGSSPLHY----------------AAKKNKLDIAKILIE 90
           D+   L+++      + A D +G++ LH                       L +   L  
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 91  SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
           +     + N    TPL LAA+EG +++ + +++ +    A
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.8 bits (223), Expect = 3e-23
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 48/177 (27%)

Query: 3   VGSSPLHYAA---KKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQEG 47
            G + L  A    +         L++ ++            C+ E     + LH+A ++ 
Sbjct: 42  TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 48  YVDMCKLLIKHQIDVNAQDI-------------VGSSPLHYAAKKNKLDIAKILIE--SN 92
            +   KLL+++  DV+ +                G  PL  AA   + D+   L+E    
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 93  RCSLENKMK--KTPLHL----------------AAQEGHVDMCKLLIKHQIDVNAQD 131
             SLE       T LH                    +G + M   L          +
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 23/120 (19%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQI--------DVNAQDIVGSSPLHYAA---KKNKLDIA 85
           +  L      G  +    L+++              +   G + L  A    +       
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 86  KILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
             L++ ++            C+ E     + LH+A ++  +   KLL+++  DV+ +   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (254), Expect = 1e-27
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 35/160 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE---------------SNRCSLENKMKKTPLHLAAQEGY 48
           G + LH A ++  + +  +L+E                 +        + PL LAA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 49  VDMCKLLIKHQI---DVNAQDIVGSSPLHYAAKKNKLDI-----------------AKIL 88
           + + K L+++     D++A+D VG++ LH   +     +                 AK+ 
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220

Query: 89  IESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
                  + N+   TPL LAA  G + +   +++ +I   
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 42/172 (24%)

Query: 1   RQVGSSPLHYA---AKKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQ 45
            + G + L  A       + D   +L++  R             +      +T LH+A +
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 46  EGYVDMCKLLIKHQIDVNAQD--------------IVGSSPLHYAAKKNKLDIAKILIES 91
              + +  LL+++  DV A                  G  PL  AA  N+L I K L+++
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

Query: 92  NRCS----LENKMKKTPLHLAAQEGH---------VDMCKLLIKHQIDVNAQ 130
           +         + +  T LH   +              M   ++     ++  
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 26/132 (19%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS----LENKMKKTPLHLAAQEGYVDM-------- 51
           G  PL  AA  N+L I K L++++         + +  T LH   +     +        
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 52  --------CKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKT 103
                      L          +  G +PL  AA   K+ +   +++          +  
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------REIHEPE 261

Query: 104 PLHLAAQEGHVD 115
             H AA   H  
Sbjct: 262 CRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLL-------IKHQIDVNAQDI-VGSSPLHYA---AKKN 80
                +  +  A  +      + L        K   D   +D   G + L  A       
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 81  KLDIAKILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           + D   +L++  R             +      +T LH+A +  ++ +  LL+++  DV 
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 129 AQD 131
           A  
Sbjct: 129 AAA 131

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 12/83 (14%)

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLEN---------KMKKTPLHLA--- 108
                 +     +  A  ++     + L+   + S +          +  KT L  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 109 AQEGHVDMCKLLIKHQIDVNAQD 131
              G  D   LL+      ++  
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLK 87

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (251), Expect = 3e-27
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES---------------NRCSLENKMKKTPLHLAAQEGY 48
           G + LH A ++      ++L+E                          + PL LAA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 49  VDMCKLLIKH---QIDVNAQDIVGSSPLHYAA---------KKNKLDIAKILIE------ 90
             +   L ++   Q D+  QD  G++ LH             K    +  +L+       
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212

Query: 91  --SNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             +N  +L N    +PL +AA+ G + + + +I+ +I   A  
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 32/171 (18%), Positives = 48/171 (28%), Gaps = 42/171 (24%)

Query: 3   VGSSPLHYAA---KKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQEG 47
            G + L  A       + D   IL++                       +T LH+A +  
Sbjct: 45  TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104

Query: 48  YVDMCKLLIKHQIDVNAQDIV--------------GSSPLHYAAKKNKLDIAKILIE--S 91
                +LL++   DV+AQ                 G  PL  AA  N+  I   L E   
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164

Query: 92  NRCSLENKMK--KTPLHLAAQEGH---------VDMCKLLIKHQIDVNAQD 131
            +  L  +     T LH                  M  LL+     +    
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 23/118 (19%)

Query: 37  KTPLHLAA----QEGYVDMCKLLIKHQIDVNAQDI----VGSSPLHYAA---KKNKLDIA 85
           +  L         +G   +   L+ H+  +  ++      G + L  A       + D  
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 86  KILIESNR------------CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            IL++                       +T LH+A +       +LL++   DV+AQ 
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.9 bits (229), Expect = 2e-25
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 11  AAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGS 70
            +  +    +  L+      + +      L  AA+ G  D  ++L+ +  DV A+D  GS
Sbjct: 1   GSSHHHHHHSSGLV-PRGSHMGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 71  SPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           +PLH AA+   L++ K+L+E+  +  + ++K  KT   ++   G+ D+ ++L
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 83.8 bits (208), Expect = 3e-22
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 43  AAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK- 101
            +   +      L+     + +        L  AA+  + D  +IL+ +N   +  K K 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN 56

Query: 102 -KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             TPLHLAA+ GH+++ KLL++   DV AQD
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.2 bits (196), Expect = 2e-20
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQID 61
               L  AA+  + D  +IL+ +N   +  K K   TPLHLAA+ G++++ KLL++   D
Sbjct: 24  LGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKIL 88
           V AQD  G +    +      D+A+IL
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.4 bits (198), Expect = 5e-19
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 11  AAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV- 68
               + LD   +L+ S+    +          LAA+ G++ +   L +         I  
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161

Query: 69  -GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK----TPLHLAAQEGHVDMCKLLIKH 123
                   AA+   L +   L E         ++          A   GH ++   L+  
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

Query: 124 QIDVNAQDIEA 134
            + +   +I  
Sbjct: 222 PVMLAYAEIHE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 8   LHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI 67
           L         +  ++  ++++  +++++      +      +D   LL+     V     
Sbjct: 67  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 126

Query: 68  VGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK----TPLHLAAQEGHVDMCKLLIKH 123
                   AA+   L +   L E    +    M +        LAA+ GH+ +   L + 
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 185

Query: 124 QIDVNAQDIEA 134
                   I+A
Sbjct: 186 APTEATAMIQA 196

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 18/128 (14%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLL-------- 55
                  +      D+            E       L    +     +   +        
Sbjct: 254 MHDAFKLSNPDGVFDLVT--------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 56  IKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
           IK            +  L  A +        +L+  +  S+    K    ++    G +D
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLL--SIPSVLALTKANNYYINETGGRLD 363

Query: 116 MCKLLIKH 123
           +  + ++H
Sbjct: 364 LRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 12  AKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDM-CKLLIKHQIDVNAQDIVGS 70
              +  +   I +          M++    L     + +   K L         +  V  
Sbjct: 42  MTLSYKEAIHIFLPGT-----KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96

Query: 71  SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA 129
                    + LD   +L+ S+    +          LAA+ GH+ +   L +       
Sbjct: 97  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156

Query: 130 QDIEA 134
             I+A
Sbjct: 157 AMIQA 161

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 22/187 (11%), Positives = 41/187 (21%), Gaps = 59/187 (31%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQE-------------- 46
                  AA+   L +   L E         ++         AA                
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 47  -------------GYVDMCKLLIKHQIDVNA--------------------QDIVGSSPL 73
                        G   +   + +H   +                      + + G   L
Sbjct: 223 VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML 282

Query: 74  HYAAKKNK---LDIAKILIESNRC------SLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
               ++N    LD  + L+           +         L LA + G+   C LL+   
Sbjct: 283 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342

Query: 125 IDVNAQD 131
             +    
Sbjct: 343 SVLALTK 349

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 38  TPLHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC 94
           T LHLA        + +   L+++  +++ Q   GS+ LHY    +  +  K+L+   + 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKA 229

Query: 95  SLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
           S+E  N+  +TPL +A +  H    +LL +  
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 4   GSSPLHYA---AKKNKLDIAKILIE-SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             + LH A     +  L I   L++ S     +     T LH        +  KLL++ +
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMC 117
             +   +  G +PL  A +       ++L ++          +   H+     HV+  
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA-------LSGRFNSHV-----HVEYE 274

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 4   GSSPLHYAAKKNKLD-IAKILIESNRC--SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
            +    + +  + L  +      +        ++   TPLH       +++ K L+KH  
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155

Query: 61  DVNAQDIVGSSPLHYAAKKN---KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVD 115
           +    D +G S L  A K          + L++     L   + M +T LH       + 
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215

Query: 116 MCKLLIKHQIDV 127
            C    K+ +D+
Sbjct: 216 GCSAAAKYYLDI 227

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 28/155 (18%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEG----YVDMCKLL 55
           G++PLH+      L++ K L++           + M ++ L  A +            LL
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 56  IKHQIDVNAQDIVGSSPLHYAA----KKNKLDIAKILIES---------NRCSLENKMKK 102
                 +  +D +  + LH+             AK  ++          NR       +K
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247

Query: 103 TPLHLAAQEGHVDMCKLLIKHQI----DVNAQDIE 133
                       D     +  +      +NAQD  
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 22/150 (14%)

Query: 4   GSSPLHYAAKKN---KLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVD-------- 50
           G S L  A K          + L++     L   + M +T LH       +         
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 223

Query: 51  ----MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE-----NKMK 101
               +   ++K Q                     + D     ++            +   
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 283

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
            T L++AA+ G++ +   L+ +  D    +
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIAN 313

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 4   GSSPLHYAA----KKNKLDIAKILIES-------------NRCSLENKMKKTPLHLAAQE 46
             + LH+             AK  ++                 + E + K    +   ++
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260

Query: 47  GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPL 105
             ++   L       +NAQD  G + L+ AA+   + I   L++      + NK    P+
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320

Query: 106 HLAAQ 110
              A 
Sbjct: 321 DFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 4   GSSPLHYAAKKNKLDIAKILI--ESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
             + L         ++   L    SNR S      +   H++      ++       Q++
Sbjct: 63  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122

Query: 62  VNAQ-DIVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGHVDM 116
           +N   D  G++PLH+      L++ K L++           + M ++ L  A +  +   
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYD 179

Query: 117 CK----LLIKHQIDVNAQDI 132
                 LL      +  +D 
Sbjct: 180 SGTFEALLDYLYPCLILEDS 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD-IAKILIE 90
           +    +  L         +M   L     + N++    +    + +  + L  +      
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 91  SNRC--SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +        ++   TPLH      ++++ K L+KH  +    D
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 4e-15
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 38  TPLHLA---AQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC 94
             LHLA   A +  + +   +I++   ++A+   G++ LHYAA  N+ D  K+L+   R 
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRA 250

Query: 95  SLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
            +   N+  +T L +A ++ H +  +LL + Q  
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 4   GSSPLHYA---AKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLIKH 58
               LH A   A +  L +   +I  N   L  +     T LH AA     D  KLL+K 
Sbjct: 190 EELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
           +  V   +  G + L  A KK+  +  ++L ++
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G++ LHYAA  N+ D  K+L+   R  +   N+  +T L +A ++ + +  +LL + Q  
Sbjct: 226 GNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 29  CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
                +   TPL  A     +  C+ L+++  +VN  D  G  PLH+A       +A + 
Sbjct: 228 WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 89  IESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
           ++        +   + PL +A +  + D+  LL
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 2/115 (1%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           Q  ++PL  A   N L   + L+++    +  +   + PLH A   G+  +  L +K   
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVD 115
           D+ A+D  G  PL  A +    DI  +L    +       +         +   D
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL-RLAKMREAEAAQGQAGDETYLDIFRD 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.96
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.95
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	83.0

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.8e-36  Score=176.20  Aligned_cols=129  Identities=34%  Similarity=0.511  Sum_probs=110.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||.|+..++.+++++|++.+ +.+.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus        34 d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~  113 (169)
T 4gpm_A           34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN  113 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            567899999999999999999999888 5577888899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      ++.+++++|++.| +++.++..|.|||++|+..++.+++++|+++|++++-
T Consensus       114 g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            9999999999988 8888888899999999999999999999999998864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.8e-34  Score=167.76  Aligned_cols=129  Identities=38%  Similarity=0.535  Sum_probs=124.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         6 ~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      ++|+.|++.|+.++|+.|++.| +++.++..|.|||++|+..++.++++++++.|.+++.++..|.||||+|+..++.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            4799999999999999999999 568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          85 AKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        85 ~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +++|++.| +++.++..|+|||++|+..|+.+++++|+++|++++.+|.+|
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  136 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG  136 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            99999999 899999999999999999999999999999999999998876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=179.05  Aligned_cols=134  Identities=31%  Similarity=0.470  Sum_probs=128.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |++|.||||+|+..|+.+++++|++.+ +....+..|.+|++.|+..++.+++++|++.|.+++.++..|.||||+|+..
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            578999999999999999999999999 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+.+++++|++.| +++..+..|.||||+|+..|+.+++++|+++|++++.+|.+|
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G  218 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQ  218 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999 889999999999999999999999999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.2e-34  Score=168.54  Aligned_cols=134  Identities=21%  Similarity=0.303  Sum_probs=127.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            578999999999999999999999998 4577888999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.+ +++..+..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       112 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  167 (192)
T 2rfm_A          112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG  167 (192)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999 888999999999999999999999999999999999988765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=1.4e-34  Score=166.42  Aligned_cols=133  Identities=21%  Similarity=0.325  Sum_probs=116.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS-PLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t-~l~~a~~   78 (134)
                      ++.|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+ .|+.+++++|++.|.+++.++..|.| |||+|+.
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            467999999999999999999999998 55778899999999985 99999999999999999999999999 9999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|+++| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  144 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR  144 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCc
Confidence            99999999999999 888999999999999999999999999999999999988765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=4e-34  Score=161.13  Aligned_cols=125  Identities=23%  Similarity=0.374  Sum_probs=119.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV-GSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~   78 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+. ++.+++++|++.|.+++.++.. |.||+|+|+.
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            578999999999999999999999999 557788999999999999 9999999999999999999999 9999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      .++.+++++|++.+ +++..+..+.|||++|+..++.+++++|+++|+|
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999 8889999999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.5e-33  Score=162.04  Aligned_cols=132  Identities=23%  Similarity=0.252  Sum_probs=122.3

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      .|.||||.|+..|+.+++++|++.+ ..+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            5889999999999999999999988 457788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|++.+ +.+..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  135 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG  135 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999 888889999999999999999999999999999999888765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-33  Score=159.00  Aligned_cols=131  Identities=28%  Similarity=0.399  Sum_probs=123.1

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      ..+||+.|++.|+.+++++|++.+.....+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..++.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            46899999999999999999999965557888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          84 IAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        84 ~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++++|++.| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  133 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            999999999 888899999999999999999999999999999999988765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=100.00  E-value=1.3e-32  Score=152.66  Aligned_cols=124  Identities=40%  Similarity=0.710  Sum_probs=118.7

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      +|.||||.|+..|+.+++++|++.+ +.+..+..|.+|||+|+..++.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            5899999999999999999999998 457788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      .+++++|++.+ +.+..+..+.||+++|+..++.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999 8888999999999999999999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=4.1e-33  Score=161.47  Aligned_cols=134  Identities=31%  Similarity=0.467  Sum_probs=122.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |+.|.+||+.|++.|+.+++++|++.+.  ....+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            4678899999999999999999998663  35667778899999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+ +++..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  141 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG  141 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999 888889999999999999999999999999999999988765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4e-33  Score=162.49  Aligned_cols=129  Identities=25%  Similarity=0.431  Sum_probs=64.7

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||+|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..+
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            34455555555555555555555544 23444444555555555555555555555555555555555555555555555


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcc
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ  130 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  130 (134)
                      +.+++++|++.| +.+..+..+.||+++|+..++.+++++|+++|+++..+
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  164 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS  164 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence            555555555554 44444445555555555555555555555554444433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.4e-32  Score=159.94  Aligned_cols=133  Identities=35%  Similarity=0.489  Sum_probs=122.9

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..+.+||+.|++.|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..+
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            34678999999999999999999998 55778889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+++++|++.+ +.+..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  146 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG  146 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999999999999 888889999999999999999999999999999999888765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.2e-32  Score=159.65  Aligned_cols=133  Identities=19%  Similarity=0.253  Sum_probs=96.7

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      .++.++|+.|+..|+.+++++|++.+  +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            45667777777777777777777764  3456667777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  138 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG  138 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence            7777777777777 666777777777777777777777777777777777776654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.7e-32  Score=164.34  Aligned_cols=133  Identities=29%  Similarity=0.426  Sum_probs=86.2

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||+|+|+..+
T Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  150 (231)
T 3aji_A           71 DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG  150 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            45566666666666666666666655 33455556666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+++++|++.+ +.+..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       151 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            666666666666 566666666777777777777777777777777766666544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2e-32  Score=160.48  Aligned_cols=133  Identities=29%  Similarity=0.387  Sum_probs=126.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            568999999999999999999999999 5677889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      ++.+++++|++.| +++..+..|.||+++|+..++.+++++|++.|++++..+..
T Consensus       116 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             TCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             CCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence            9999999999999 88899999999999999999999999999999999876654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=100.00  E-value=2.3e-32  Score=153.92  Aligned_cols=123  Identities=29%  Similarity=0.452  Sum_probs=116.3

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..+.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||+|+|+..+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            35789999999999999999999999 55778899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      +.+++++|++.| +.+..+..|.|||++|+..++.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999 88889999999999999999999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.3e-32  Score=166.71  Aligned_cols=133  Identities=34%  Similarity=0.470  Sum_probs=95.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      ..|.||||.|+..++.+++++|++.+.  .+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..
T Consensus        88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            456666666666666666666666552  345556667777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       168 ~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  223 (253)
T 1yyh_A          168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD  223 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCC
Confidence            7777777777777 677777777788888877777788888887777777777654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=6e-32  Score=157.51  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=123.1

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      +.+|||.|+..|+.++++.|++.+.  .+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            5689999999999999999999984  46778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|++.+ +.+..+..+.||||+|+..++.+++++|+++|++++.+|..|
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  135 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG  135 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            99999999999 888899999999999999999999999999999999988765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-31  Score=162.55  Aligned_cols=134  Identities=31%  Similarity=0.483  Sum_probs=122.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  116 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK  116 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            567899999999999999999999988 5577788899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.+ +++..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       117 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  172 (231)
T 3aji_A          117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG  172 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCC
Confidence            9999999999998 788888899999999999999999999999999999888765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.2e-32  Score=165.72  Aligned_cols=134  Identities=28%  Similarity=0.434  Sum_probs=127.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI-DVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.||||+|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||+|+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            578999999999999999999999999 567888999999999999999999999999986 888999999999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.| +++..+..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999999 888899999999999999999999999999999999988765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-31  Score=160.80  Aligned_cols=133  Identities=34%  Similarity=0.470  Sum_probs=76.9

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      ..|.||||.|+..++.+++++|++.+.  ....+..|.+|||+|+..++.+++++|++.+.+++..+..|.||+|+|+..
T Consensus        56 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  135 (223)
T 2f8y_A           56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV  135 (223)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc
Confidence            345555555555555555555555442  234445555555555555555555655555555555555566666666666


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +++..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       136 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  191 (223)
T 2f8y_A          136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD  191 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccC
Confidence            6666666666665 555555666666666666666666666666666666555443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-31  Score=160.86  Aligned_cols=134  Identities=28%  Similarity=0.434  Sum_probs=110.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI-DVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.+. .++..+..+.||+|+|+.
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            467888888888888888888888887 456677888888888888888888888888865 777777888888888888


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+ +++..+..+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       102 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            88888888888887 777778888888888888888888888888888888777654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5.1e-32  Score=156.36  Aligned_cols=129  Identities=26%  Similarity=0.420  Sum_probs=73.0

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~   82 (134)
                      ..+|||.|+..|+.+++++|++.+ +.+..+..|.||||+|+. |+.+++++|++.|.+++.++..|.||+|+|+..++.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            445556666666666666555555 334445555555555555 555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC-CCccccc
Q psy6445          83 DIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID-VNAQDIE  133 (134)
Q Consensus        83 ~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~-~~~~~~~  133 (134)
                      +++++|++.+ +++..+..|.|||++|+..++.+++++|+++|++ ++.+|..
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  136 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK  136 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCC
Confidence            5555555555 5555555555555555555555555555555555 3444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.9e-31  Score=161.35  Aligned_cols=134  Identities=27%  Similarity=0.367  Sum_probs=105.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC---cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN---RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~   77 (134)
                      |..|.||||.|+..|+.+++++|++.+   +.+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||+|+|+
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            356778888888888888888888776   23556677888888888888888888888888888888888888888888


Q ss_pred             HhCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHHHH-hcCCCCCcccccC
Q psy6445          78 KKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKLLI-KHQIDVNAQDIEA  134 (134)
Q Consensus        78 ~~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~-~~g~~~~~~~~~g  134 (134)
                      ..++.+++++|++.+  +.+..+..|.|||++|+..++.+++++|+ +.|++++.+|..|
T Consensus       149 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g  208 (228)
T 2dzn_A          149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  208 (228)
T ss_dssp             HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred             HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence            888888888888777  56667778888888888888888888888 7788888877665

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.1e-31  Score=158.47  Aligned_cols=134  Identities=27%  Similarity=0.421  Sum_probs=108.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLI-KHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.||||+|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||+|+|+.
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  115 (201)
T 3hra_A           36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE  115 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHH
Confidence            457788888888888888888888887 45667778888888888888888888888 4466777788888888888888


Q ss_pred             hCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCC-----HHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGH-----VDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~-----~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+  +.+..+..+.||||+|+..+.     .+++++|+++|++++.+|..|
T Consensus       116 ~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g  178 (201)
T 3hra_A          116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG  178 (201)
T ss_dssp             TTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCC
Confidence            88888888888876  566777788888888888776     788888888888888877655

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.6e-32  Score=164.63  Aligned_cols=133  Identities=28%  Similarity=0.407  Sum_probs=76.8

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCC------CCCCCCCCCcHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID------VNAQDIVGSSPLH   74 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~------~~~~~~~~~t~l~   74 (134)
                      ..|.||||+|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.+.+      .+..+..|.||||
T Consensus        43 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            44556666666666666666666655 3344555566666666666666666666665543      2334445556666


Q ss_pred             HHHHhCcHHHHHHHHhcC-CCCCCCC-CCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          75 YAAKKNKLDIAKILIESN-RCSLENK-MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +|+..++.+++++|++.| +++..+. .|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  184 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  184 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC
Confidence            666666666666666655 4555544 55666666666666666666666666665555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.5e-32  Score=167.43  Aligned_cols=134  Identities=23%  Similarity=0.301  Sum_probs=118.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc------------------------------------------------cccc
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR------------------------------------------------CSLE   32 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~------------------------------------------------~~~~   32 (134)
                      |..|.||||+|+..++.+++++|++.+.                                                .+..
T Consensus        75 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (282)
T 1oy3_D           75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE  154 (282)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred             CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence            4567888888888888888888887652                                                2345


Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV-GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      +..|.||||+|+..|+.+++++|++.|.+++..+.. |.||||+|+..++.+++++|++.| +++.++..|.|||++|+.
T Consensus       155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH
Confidence            678999999999999999999999999999998854 999999999999999999999999 899999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|+++|++++.+|..|
T Consensus       235 ~~~~~~v~~Ll~~ga~~~~~~~~g  258 (282)
T 1oy3_D          235 RPNPILARLLRAHGAPEPEDGGDK  258 (282)
T ss_dssp             SSCHHHHHHHHHTTCCCCCCC---
T ss_pred             cCCcHHHHHHHHcCCCcCcCCCcc
Confidence            999999999999999999998876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-31  Score=166.74  Aligned_cols=134  Identities=30%  Similarity=0.471  Sum_probs=119.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCC------------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI------------   67 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~------------   67 (134)
                      |..|.||||.|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|.+++..+.            
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B           70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            567899999999999999999999998 4577888999999999999999999999999887765542            


Q ss_pred             ------------------------------------------------CCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCC
Q psy6445          68 ------------------------------------------------VGSSPLHYAAKKNKLDIAKILIESN-RCSLEN   98 (134)
Q Consensus        68 ------------------------------------------------~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~   98 (134)
                                                                      .|.||||+|+..++.+++++|++.| +++..+
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d  229 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD  229 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             chHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcC
Confidence                                                            4678888999999999999999999 888889


Q ss_pred             CCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          99 KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        99 ~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  265 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG  265 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999999999999999999999999999999988776

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.6e-31  Score=162.11  Aligned_cols=132  Identities=26%  Similarity=0.384  Sum_probs=96.5

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCC-----CCCCCCCCcHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV-----NAQDIVGSSPLHY   75 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~-----~~~~~~~~t~l~~   75 (134)
                      .|.||||.|+..|+.+++++|++. + +.+..+..|.||||+|+..|+.+++++|++.+.++     +..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            467777777777777777777776 5 44666777777777777777777777777777665     4555667777777


Q ss_pred             HHHhCcHHHHHHHHhcC-CCCCCCC-------------CCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          76 AAKKNKLDIAKILIESN-RCSLENK-------------MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        76 a~~~~~~~~~~~Ll~~~-~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+..++.+++++|++.| +.+..+.             .+.||||+|+..++.+++++|+++|++++.+|..|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  154 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG  154 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            77777777777777777 5544433             57777777777777777777777777777777654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.8e-31  Score=154.39  Aligned_cols=124  Identities=31%  Similarity=0.541  Sum_probs=117.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        44 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  123 (169)
T 2y1l_E           44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF  123 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            568999999999999999999999999 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      ++.+++++|++.| +.+..+..+.||+++|+..++.+++++|++.|
T Consensus       124 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999 88889999999999999999999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-31  Score=166.42  Aligned_cols=90  Identities=24%  Similarity=0.302  Sum_probs=51.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc----ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR----CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      |+.|.||||.|+..|+.+++++|++.+.    .+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A   85 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            4556666666666666666666666552    344555566666666666666666666666655555554445555444


Q ss_pred             HHhCcHHHHHHHHh
Q psy6445          77 AKKNKLDIAKILIE   90 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~   90 (134)
                      +..++.+++++|++
T Consensus        86 ~~~~~~~~v~~Ll~   99 (282)
T 1oy3_D           86 CRVRAHTCACVLLQ   99 (282)
T ss_dssp             TTTTCHHHHHHHSS
T ss_pred             HHcCCcchhHhhhc
Confidence            44444444444444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=166.36  Aligned_cols=132  Identities=22%  Similarity=0.181  Sum_probs=123.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..+
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g   98 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN   98 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            46788999999999999999999999 56788999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCC-CCCCChhhHH--HhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          81 KLDIAKILIESN-RCSLEN-KMKKTPLHLA--AQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      +.+++++|++.| +.+..+ ..|.|||++|  +..++.+++++|++.|++++.+|..
T Consensus        99 ~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           99 DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            999999999999 777765 6899999999  9999999999999999999888754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.7e-31  Score=154.61  Aligned_cols=124  Identities=32%  Similarity=0.477  Sum_probs=115.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence            456889999999999999999999999 5678889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI  125 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  125 (134)
                      ++.+++++|+++| +++..+..|.||+++|+. ++.+++++|++.|+
T Consensus       119 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999 888999999999999877 89999999999885

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.6e-31  Score=154.25  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=117.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+. |+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||+|+|+..
T Consensus        35 ~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  113 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE  113 (162)
T ss_dssp             CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            5689999999999 9999999999999 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-C-CCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          80 NKLDIAKILIESN-R-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~-~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      ++.+++++|++.+ + ....+..|.||+++|+..++.+++++|+++|++
T Consensus       114 ~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999 4 578899999999999999999999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.6e-31  Score=155.00  Aligned_cols=128  Identities=27%  Similarity=0.468  Sum_probs=120.8

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc
Confidence            568999999999999999999999998 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      ++.+++++|+++| ++...+..|.||+++|+..++.+++++|++++.++.
T Consensus       113 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999999999 888899999999999999999999999999876543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=5.3e-31  Score=159.85  Aligned_cols=134  Identities=24%  Similarity=0.345  Sum_probs=121.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcc------cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCC-------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRC------SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI-------   67 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-------   67 (134)
                      |..|.||||+|+..|+.+++++|++.+..      ...+..|.||||+|+..|+.+++++|++.|.+++..+.       
T Consensus        34 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  113 (232)
T 2rfa_A           34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR  113 (232)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeec
Confidence            57899999999999999999999999843      44567899999999999999999999999999988765       


Q ss_pred             ------CCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHH----HHHHhcCCCCC------cc
Q psy6445          68 ------VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMC----KLLIKHQIDVN------AQ  130 (134)
Q Consensus        68 ------~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~----~~L~~~g~~~~------~~  130 (134)
                            .|.||+|+|+..++.+++++|++.| +++..+..|.||||+|+..++.+++    ++|+++|++.+      .+
T Consensus       114 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~  193 (232)
T 2rfa_A          114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP  193 (232)
T ss_dssp             TTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccC
Confidence                  6999999999999999999999999 8889999999999999999999988    99999999883      56


Q ss_pred             cccC
Q psy6445         131 DIEA  134 (134)
Q Consensus       131 ~~~g  134 (134)
                      |..|
T Consensus       194 ~~~g  197 (232)
T 2rfa_A          194 NNQG  197 (232)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            6554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=5.2e-31  Score=160.26  Aligned_cols=134  Identities=31%  Similarity=0.416  Sum_probs=101.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.||||.|+..|+.+++++|++.+  ..+..+..|.+|||+|+..++.+++++|++.|.+++..+..|.||+|+|+.
T Consensus        74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  153 (237)
T 3b7b_A           74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF  153 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Confidence            345677777777777777777777766  235566677777777777777777777777777777777777788888888


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+ +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       154 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  210 (237)
T 3b7b_A          154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG  210 (237)
T ss_dssp             HCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             CCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCC
Confidence            88888888888777 677777778888888888888888888888888887777665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=6.3e-31  Score=160.14  Aligned_cols=133  Identities=22%  Similarity=0.345  Sum_probs=93.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCc-----ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNR-----CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHY   75 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~   75 (134)
                      ..|.||||.|+..++.+++++|++.+.     .+..+..|.+|||+|+..++.+++++|++.|.+++..+ ..|.||+|+
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence            456666666666666666666666652     24455666777777777777777777777777776666 567777777


Q ss_pred             HHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          76 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        76 a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+..++.+++++|++.| +++..+..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  216 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN  216 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCC
Confidence            77777777777777777 666777777777777777777777777777777777776654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=5.5e-31  Score=150.89  Aligned_cols=120  Identities=31%  Similarity=0.591  Sum_probs=114.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            467999999999999999999999998 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHH
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL  120 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L  120 (134)
                      ++.+++++|++.| +++..+..|.||+++|+..++.+++++|
T Consensus       111 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999 8888999999999999999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=7.7e-31  Score=163.68  Aligned_cols=133  Identities=24%  Similarity=0.288  Sum_probs=109.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~  135 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS  135 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            467888899999999888888888888 4577788888888888888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.+ +... +..+.|||++|+..|+.+++++|+++|++++.+|..|
T Consensus       136 ~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g  190 (285)
T 3d9h_A          136 GSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL  190 (285)
T ss_dssp             TCHHHHHHHHHTTCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             CHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            8888888888888 4433 3447888888888888888888888888888777654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=2.6e-31  Score=165.16  Aligned_cols=134  Identities=19%  Similarity=0.355  Sum_probs=118.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc--ccccccCCCChhhHHH-----hhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR--CSLENKMKKTPLHLAA-----QEGYVDMCKLLIKHQIDVNAQDIVGSSPL   73 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~-----~~~~~~~~~~l~~~~~~~~~~~~~~~t~l   73 (134)
                      |..|.||||+|+..|+.+++++|++.+.  .+..+..|.||||+|+     ..++.+++++|+..|...+..+..|.|||
T Consensus       108 d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  187 (276)
T 4hbd_A          108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL  187 (276)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHH
Confidence            6789999999999999999999999994  4777888999999988     66778899999999888888888889999


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh-cCCCCCcccccC
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK-HQIDVNAQDIEA  134 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g  134 (134)
                      |+|+..++.+++++|++.| +++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       188 h~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            9999999999999999988 788888889999999999999999999998 799988888765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=4.9e-31  Score=156.07  Aligned_cols=124  Identities=28%  Similarity=0.381  Sum_probs=118.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||+|+..++.+++++|++.+ +.+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  144 (192)
T 2rfm_A           65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY  144 (192)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            467999999999999999999999999 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      ++.+++++|++.| ++...+..|.||+++|+..++.+++++|+++|
T Consensus       145 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999 88899999999999999999999999999865

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=1e-30  Score=158.99  Aligned_cols=133  Identities=32%  Similarity=0.455  Sum_probs=84.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            455666777777777777777666666 3455556666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          80 NKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        80 ~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      ++.+++++|++.+  +....+..+.|||++|+..++.+++++|++.|++++.+|..
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  143 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE  143 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC
Confidence            6666666666655  34445555666666666666666666666666666555543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=9.9e-31  Score=163.19  Aligned_cols=133  Identities=22%  Similarity=0.297  Sum_probs=99.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      |..|.||||.|+..|+.+++++|++.+.....+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..+
T Consensus       122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            34566777777777777777777776643333445777777777777777777777777777777778888888888888


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.+++++|++.| +++ .+..|.|||++|+..++.+++++|+++|++++.+|.+|
T Consensus       202 ~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  255 (285)
T 3d9h_A          202 QRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG  255 (285)
T ss_dssp             CHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            888888888887 554 46778888888888888888888888888888877765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.98  E-value=5.5e-31  Score=151.21  Aligned_cols=129  Identities=28%  Similarity=0.406  Sum_probs=115.8

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      |.+||+.|+..|+.+++++|++..  +.+..+..|.||||+ +..|+.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            568999999999999999999885  557778889999999 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|++.| +++..+..|.||||+|+..++.+++++|++. ++++.+|..|
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g  133 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARG  133 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTS
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCC
Confidence            99999999998 8888888999999999999999999999988 8888887765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=1.5e-30  Score=157.44  Aligned_cols=134  Identities=28%  Similarity=0.403  Sum_probs=114.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc---ccc-cccCCCChhhHHHhhCCHHHHHHHHhcC--CCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR---CSL-ENKMKKTPLHLAAQEGYVDMCKLLIKHQ--IDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~---~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~--~~~~~~~~~~~t~l~   74 (134)
                      |..|.||||+|+..|+.+++++|++.+.   ... .+..|.||||+|+..|+.+++++|++.|  .+++..+..|.||+|
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~  112 (228)
T 2dzn_A           33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH  112 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHH
Confidence            5678899999999999999999998872   233 6678889999999999999999999887  777888888899999


Q ss_pred             HHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC-CCCCcccccC
Q psy6445          75 YAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ-IDVNAQDIEA  134 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g  134 (134)
                      +|+..++.+++++|++.| +.+..+..|.|||++|+..++.+++++|++.| ++++.+|..|
T Consensus       113 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g  174 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG  174 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTS
T ss_pred             HHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCC
Confidence            999999999999999888 78888888999999999999999999999988 8888887665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.9e-30  Score=158.05  Aligned_cols=131  Identities=23%  Similarity=0.359  Sum_probs=65.1

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI----DVNAQDIVGSSPLHYAA   77 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~   77 (134)
                      .|.||||+|+..|+.+++++|++.+ +.+..+..|.+|||+|+..++.+++++|++.+.    +++..+..|.||+|+|+
T Consensus        45 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           45 LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  124 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH
Confidence            3444444444444444444444444 223334444444444444444444444444443    34444444555555555


Q ss_pred             HhCcHHHHHHHHhcC-CCCCCC-CCCCChhhHHHhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          78 KKNKLDIAKILIESN-RCSLEN-KMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        78 ~~~~~~~~~~Ll~~~-~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      ..++.+++++|++.+ +....+ ..+.|||++|+..++.+++++|+++|++++.+|..
T Consensus       125 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (241)
T 1k1a_A          125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS  182 (241)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             HcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            555555555555555 444333 44555555555555555555555555555555443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.97  E-value=8.8e-32  Score=151.65  Aligned_cols=126  Identities=26%  Similarity=0.375  Sum_probs=114.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   86 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN   86 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHc
Confidence            678999999999999999999999998 5578889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      ++.+++++|++.| +....+..|.||+++|+..+..+++++|.+.+..
T Consensus        87 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           87 GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            9999999999999 8889999999999999999999998888776544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.1e-30  Score=158.95  Aligned_cols=128  Identities=25%  Similarity=0.325  Sum_probs=120.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-------ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCC-CCCcH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-------CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDI-VGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~   72 (134)
                      |..|.||||+|+..|+.+++++|++.+.       ....+..|.||||+|+..|+.+++++|++.|.+++..+. .|.||
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  154 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence            5689999999999999999999999884       356678899999999999999999999999999999987 89999


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          73 LHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        73 l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      +|+|+..++.+++++|+++| +++..+..|.||+++|+..++.+++++|+++|++..
T Consensus       155 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          155 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            99999999999999999999 889999999999999999999999999999999765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.9e-31  Score=163.95  Aligned_cols=134  Identities=19%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhCcc-c-----------ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESNRC-S-----------LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ   65 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~~~-~-----------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   65 (134)
                      |..|.||||+|+..   |+.+++++|++.+.. .           ..+..|.||||+|+..|+.+++++|++.|.+++..
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  119 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR  119 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            56899999999999   999999999998832 2           13467999999999999999999999999999998


Q ss_pred             CCC-------------CCcHHHHHHHhCcHHHHHHHHh---cC-CCCCCCCCCCChhhHHHh--hCCHH-------HHHH
Q psy6445          66 DIV-------------GSSPLHYAAKKNKLDIAKILIE---SN-RCSLENKMKKTPLHLAAQ--EGHVD-------MCKL  119 (134)
Q Consensus        66 ~~~-------------~~t~l~~a~~~~~~~~~~~Ll~---~~-~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~  119 (134)
                      +..             |.||||+|+..++.+++++|++   .| +++..+..|.||||+|+.  .++.+       ++++
T Consensus       120 ~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~  199 (256)
T 2etb_A          120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG  199 (256)
T ss_dssp             CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHH
Confidence            876             9999999999999999999999   88 888999999999999998  78888       9999


Q ss_pred             HHhcCCCC-------CcccccC
Q psy6445         120 LIKHQIDV-------NAQDIEA  134 (134)
Q Consensus       120 L~~~g~~~-------~~~~~~g  134 (134)
                      |+++|+++       +.+|..|
T Consensus       200 Ll~~ga~~~~~~~~~~~~d~~g  221 (256)
T 2etb_A          200 LLQMGARLCPTVQLEEISNHQG  221 (256)
T ss_dssp             HHHHHHHHSTTCCGGGCCCTTS
T ss_pred             HHHcCCCcccccccccccCCCC
Confidence            99999999       7777765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-30  Score=170.04  Aligned_cols=134  Identities=35%  Similarity=0.571  Sum_probs=119.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..
T Consensus       242 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  321 (437)
T 1n11_A          242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY  321 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc
Confidence            356888899999999999999888888 4567788899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       322 g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  377 (437)
T 1n11_A          322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  377 (437)
T ss_dssp             SCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCC
Confidence            9999999999998 888888899999999999999999999999999999888765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.5e-31  Score=162.97  Aligned_cols=131  Identities=22%  Similarity=0.410  Sum_probs=115.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-ccccccc--------------CCCChhhHHHhhCCHHHHHHHHh---cCCCC
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENK--------------MKKTPLHLAAQEGYVDMCKLLIK---HQIDV   62 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~---~~~~~   62 (134)
                      |..|.||||+|+..|+.+++++|++.| +.+..+.              .|.||||+|+..|+.+++++|++   .|.++
T Consensus        98 d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~  177 (273)
T 2pnn_A           98 YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI  177 (273)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc
Confidence            358999999999999999999999999 4455555              79999999999999999999999   99999


Q ss_pred             CCCCCCCCcHHHHHHHhCc---------HHHHHHHHhcC-CCC-------CCCCCCCChhhHHHhhCCHHHHHHHHhcCC
Q psy6445          63 NAQDIVGSSPLHYAAKKNK---------LDIAKILIESN-RCS-------LENKMKKTPLHLAAQEGHVDMCKLLIKHQI  125 (134)
Q Consensus        63 ~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~-~~~-------~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  125 (134)
                      +.++..|.||||+|+..++         .+++++|++.| +++       ..+..|.|||++|+..|+.+++++|+++|+
T Consensus       178 ~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          178 SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            9999999999999999998         89999999998 553       588999999999999999999999999998


Q ss_pred             -CCCccc
Q psy6445         126 -DVNAQD  131 (134)
Q Consensus       126 -~~~~~~  131 (134)
                       ++....
T Consensus       258 ~dp~~~~  264 (273)
T 2pnn_A          258 HEPECRH  264 (273)
T ss_dssp             C------
T ss_pred             CCchhhh
Confidence             665543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.97  E-value=1.2e-31  Score=161.97  Aligned_cols=133  Identities=26%  Similarity=0.328  Sum_probs=112.2

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      ..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++. |.+++.++..|.||||+|+..
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            46789999999999999999999998 5577889999999999999999999999999 999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +.+..+..|.||+++|+..+..++++.|+..|+....++.+|
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            9999999999999 889999999999999999999999999999999998877654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.4e-31  Score=168.05  Aligned_cols=134  Identities=17%  Similarity=0.188  Sum_probs=122.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCC---HHHHHHHHhcC-CCCCCCCCCCCcHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGY---VDMCKLLIKHQ-IDVNAQDIVGSSPLHY   75 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~-~~~~~~~~~~~t~l~~   75 (134)
                      |+.|.||||+|+..|+.+++++|+++| +.+..+..|.||||+|+..|+   .++++.|++.+ .+++..+..|.||||+
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            578999999999999999999999999 568889999999999999998   67888888875 6788899999999999


Q ss_pred             HHH----hCcHHHHHHHHhcC----------------------------------------------CCCCCCCCCCChh
Q psy6445          76 AAK----KNKLDIAKILIESN----------------------------------------------RCSLENKMKKTPL  105 (134)
Q Consensus        76 a~~----~~~~~~~~~Ll~~~----------------------------------------------~~~~~~~~~~t~l  105 (134)
                      |+.    .++.+++++|++.+                                              +++..+..|.|||
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpL  287 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  287 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence            999    89999999998763                                              3667788999999


Q ss_pred             hHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         106 HLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       106 ~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+|+..|+.+++++|+++|++++.+|..|
T Consensus       288 h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G  316 (327)
T 1sw6_A          288 NIAARLGNISIVDALLDYGADPFIANKSG  316 (327)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999999999999999876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.9e-30  Score=147.65  Aligned_cols=122  Identities=27%  Similarity=0.430  Sum_probs=115.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||. +..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..
T Consensus        33 ~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           33 NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh
Confidence            5689999999 9999999999999999 5678889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          80 NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        80 ~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      ++.+++++|++..+.+..+..|.||+++|+..++.+++++|+++
T Consensus       112 ~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          112 GHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999998877778899999999999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.3e-29  Score=150.69  Aligned_cols=134  Identities=23%  Similarity=0.365  Sum_probs=124.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      +..+.||||.|+..|+.+.++.|+..+  +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            357899999999999999999999987  457788899999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC-CCCCcccccC
Q psy6445          79 KNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ-IDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g  134 (134)
                      .++.+++++|++ .+ +.+..+..+.|||++|+..++.+++++|++.| ++++.+|..|
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTS
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Confidence            999999999995 44 77888999999999999999999999999999 9999888765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=4.1e-30  Score=164.96  Aligned_cols=103  Identities=24%  Similarity=0.339  Sum_probs=85.7

Q ss_pred             cccCCCChhhHHHhhC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-C-----CCCCCCCCCC
Q psy6445          32 ENKMKKTPLHLAAQEG--YVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-R-----CSLENKMKKT  103 (134)
Q Consensus        32 ~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~-----~~~~~~~~~t  103 (134)
                      .+..|.||||+|+..|  +.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+ +     .+..+..|.|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            5667888888888888  888888888888888888888888888888888888888888877 5     6777788888


Q ss_pred             hhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         104 PLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       104 ~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |||+|+..|+.+++++|+++|++++.+|..|
T Consensus       214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g  244 (364)
T 3ljn_A          214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEH  244 (364)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            8888888888888888888888888877665

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.2e-29  Score=161.60  Aligned_cols=74  Identities=27%  Similarity=0.449  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          61 DVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        61 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +++.++..|.||+|+|+..++.+++++|+++| +++..+..|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            33444455566666666666666666666666 555566666666666666666666666666666666665544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=7.9e-31  Score=161.50  Aligned_cols=134  Identities=23%  Similarity=0.254  Sum_probs=120.1

Q ss_pred             CCCCccHHHHHH---HhCCHHHHHHHHhhCc------------ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC
Q psy6445           1 RQVGSSPLHYAA---KKNKLDIAKILIESNR------------CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ   65 (134)
Q Consensus         1 ~~~g~~~l~~a~---~~~~~~~~~~ll~~~~------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   65 (134)
                      |..|.||||.|+   +.|+.+++++|++.+.            ....+..|.||||+|+..|+.+++++|++.|.+++..
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            367999999999   7899999999999872            1233458999999999999999999999999999998


Q ss_pred             C--------------CCCCcHHHHHHHhCcHHHHHHHHh---cC-CCCCCCCCCCChhhHHHhhCC---------HHHHH
Q psy6445          66 D--------------IVGSSPLHYAAKKNKLDIAKILIE---SN-RCSLENKMKKTPLHLAAQEGH---------VDMCK  118 (134)
Q Consensus        66 ~--------------~~~~t~l~~a~~~~~~~~~~~Ll~---~~-~~~~~~~~~~t~l~~a~~~~~---------~~~~~  118 (134)
                      +              ..|.||||+|+..++.+++++|++   .| +++..+..|.||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              579999999999999999999999   88 888999999999999998887         79999


Q ss_pred             HHHhcCCCC-------CcccccC
Q psy6445         119 LLIKHQIDV-------NAQDIEA  134 (134)
Q Consensus       119 ~L~~~g~~~-------~~~~~~g  134 (134)
                      +|+++|+++       +.+|..|
T Consensus       203 ~Ll~~ga~~~~~~~~~~~~d~~g  225 (260)
T 3jxi_A          203 LLLIKCAKLFPDTNLEALLNNDG  225 (260)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             HHHHhCcccccccchhhcccCCC
Confidence            999999988       5677655

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=6.5e-31  Score=160.38  Aligned_cols=128  Identities=26%  Similarity=0.299  Sum_probs=71.4

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKL   82 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~   82 (134)
                      |.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  116 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV  116 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            455555555555555555555555 3344555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcC-CCCCCCCCCC-ChhhHH--HhhCCHHHHHHHHhcCCCCCccc
Q psy6445          83 DIAKILIESN-RCSLENKMKK-TPLHLA--AQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        83 ~~~~~Ll~~~-~~~~~~~~~~-t~l~~a--~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      +++++|+++| +.+..+..+. ||+++|  +..|+.+++++|++.|++++..+
T Consensus       117 ~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence            5555555555 4444444444 555555  44555555555555555554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=7.5e-30  Score=167.03  Aligned_cols=133  Identities=32%  Similarity=0.508  Sum_probs=95.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI   90 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence            456778888888888888888888777 4456667777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccccc
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE  133 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  133 (134)
                      |+.+++++|++.| +++..+..+.|||++|+..|+.+++++|++.+++.+..+..
T Consensus        91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  145 (437)
T 1n11_A           91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK  145 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence            7777777777777 66666667777777777777777777777776666555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-29  Score=157.02  Aligned_cols=132  Identities=27%  Similarity=0.366  Sum_probs=124.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCC----HHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGY----VDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      |+.|.||||.|+..|+.+++++|++. + +.+..+..|.+|||.|+..++    .+++++|++.|.+++.++..|.||+|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            35689999999999999999999997 6 557788999999999999999    89999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccc
Q psy6445          75 YAAKKNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI  132 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  132 (134)
                      +|+..++.+++++|++ .+ +++..+..|.|||++|+..++.+++++|+++|++++.+|.
T Consensus       225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999 67 8888999999999999999999999999999999999885

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.2e-30  Score=159.23  Aligned_cols=126  Identities=28%  Similarity=0.414  Sum_probs=116.3

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccC-------------CCChhhHHHhhCCHHHHHHHHh---cCCCCCC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKM-------------KKTPLHLAAQEGYVDMCKLLIK---HQIDVNA   64 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~   64 (134)
                      ..|.||||+|+..|+.+++++|++.| +.+..+..             |.||||+|+..|+.+++++|++   .|.+++.
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~  167 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA  167 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc
Confidence            56999999999999999999999999 44555554             9999999999999999999999   9999999


Q ss_pred             CCCCCCcHHHHHHH--hCcHH-------HHHHHHhcC-CC-------CCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          65 QDIVGSSPLHYAAK--KNKLD-------IAKILIESN-RC-------SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        65 ~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~~-~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      ++..|.||||+|+.  .++.+       ++++|++.| ++       +..+..|.|||++|+..|+.+++++|+++|.+.
T Consensus       168 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            99999999999999  78888       999999999 66       788999999999999999999999999998654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.7e-30  Score=160.05  Aligned_cols=126  Identities=23%  Similarity=0.337  Sum_probs=115.9

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccc--------------cCCCChhhHHHhhCCHHHHHHHHh---cCCCCC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN--------------KMKKTPLHLAAQEGYVDMCKLLIK---HQIDVN   63 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~   63 (134)
                      ..|.||||+|+..|+.+++++|++.| +.+..+              ..|.||||+|+..|+.+++++|++   .|.+++
T Consensus        91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~  170 (260)
T 3jxi_A           91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR  170 (260)
T ss_dssp             EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc
Confidence            47999999999999999999999999 445555              579999999999999999999999   999999


Q ss_pred             CCCCCCCcHHHHHHHhCc---------HHHHHHHHhcC-CC-------CCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          64 AQDIVGSSPLHYAAKKNK---------LDIAKILIESN-RC-------SLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        64 ~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~-~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      .++..|.||||+|+..++         .+++++|++.| ++       +..+..|.|||++|+..|+.+++++|+++|.+
T Consensus       171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999887         79999999998 55       57899999999999999999999999999865


Q ss_pred             C
Q psy6445         127 V  127 (134)
Q Consensus       127 ~  127 (134)
                      .
T Consensus       251 ~  251 (260)
T 3jxi_A          251 D  251 (260)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.3e-30  Score=160.53  Aligned_cols=129  Identities=23%  Similarity=0.303  Sum_probs=117.6

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhCcc--------c----ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESNRC--------S----LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ   65 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~~~--------~----~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   65 (134)
                      |..|.||||+|+..   |+.+++++|++.+..        +    ..+..|.||||+|+..|+.+++++|++.|.+++..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            46899999999987   999999999998731        1    24568999999999999999999999999999998


Q ss_pred             CC--------------CCCcHHHHHHHhCcHHHHHHHHh---cC-CCCCCCCCCCChhhHHHhhCC---------HHHHH
Q psy6445          66 DI--------------VGSSPLHYAAKKNKLDIAKILIE---SN-RCSLENKMKKTPLHLAAQEGH---------VDMCK  118 (134)
Q Consensus        66 ~~--------------~~~t~l~~a~~~~~~~~~~~Ll~---~~-~~~~~~~~~~t~l~~a~~~~~---------~~~~~  118 (134)
                      +.              .|.||||+|+..++.+++++|++   .| +++..+..|.||||+|+..++         .++++
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~  210 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN  210 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence            86              79999999999999999999999   88 888999999999999999888         79999


Q ss_pred             HHHhcCCCCCc
Q psy6445         119 LLIKHQIDVNA  129 (134)
Q Consensus       119 ~L~~~g~~~~~  129 (134)
                      +|+++|++++.
T Consensus       211 ~Ll~~ga~~n~  221 (273)
T 2pnn_A          211 EILILGAKLHP  221 (273)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHhhhhccc
Confidence            99999999863

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=9.5e-31  Score=159.65  Aligned_cols=133  Identities=23%  Similarity=0.219  Sum_probs=95.3

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      ..|.||||.|++.++.+.++.|+++|.....+..+.+|||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            46899999999999999999999999554455778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|+++| +++..+..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence            99999999999 888999999999999999999999999999999999888654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=9.8e-30  Score=159.25  Aligned_cols=132  Identities=33%  Similarity=0.390  Sum_probs=120.8

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      .|.|||+.|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..++
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            5679999999999999999999999 557788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCCC------------------------------------------------------------CC
Q psy6445          82 LDIAKILIESN-RCSLEN------------------------------------------------------------KM  100 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~------------------------------------------------------------~~  100 (134)
                      .+++++|++.| +....+                                                            ..
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence            99999999988 554433                                                            34


Q ss_pred             CCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         101 KKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       101 ~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g  232 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG  232 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCC
Confidence            7788999999999999999999999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=3.6e-29  Score=155.32  Aligned_cols=132  Identities=34%  Similarity=0.427  Sum_probs=80.5

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+++|+..+
T Consensus        37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  116 (285)
T 1wdy_A           37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence            34566666666666666666666666 33455566666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHhcC-CCCCC----------CCCCCChhhHHHhhCCHHHHHHHHhc-CCCCCccccc
Q psy6445          81 KLDIAKILIESN-RCSLE----------NKMKKTPLHLAAQEGHVDMCKLLIKH-QIDVNAQDIE  133 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~----------~~~~~t~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~  133 (134)
                      +.+++++|++.+ +....          +..+.|||++|+..++.+++++|++. |++++.+|..
T Consensus       117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  181 (285)
T 1wdy_A          117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM  181 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT
T ss_pred             CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Confidence            666666666665 44333          44556666666666666666666654 6666555543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=6.5e-31  Score=164.03  Aligned_cols=125  Identities=22%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||+|+..|+.+++++|++.+. .+..  +|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~  105 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS  105 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence            4567777777777777777777777763 2322  467777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCC-CChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMK-KTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~-~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      ++.+++++|++.| +++..+..+ .|||++|+..++.+++++|+++|++.
T Consensus       106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            7777777777776 566666666 56666666666666666666666555

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=8.4e-30  Score=159.01  Aligned_cols=133  Identities=23%  Similarity=0.277  Sum_probs=121.7

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVG-SSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~   79 (134)
                      .+|.||||+|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..| .||+|+|+..
T Consensus        60 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             CTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence            35899999999999999999999999 557788999999999999999999999999999999999998 7999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.+........|.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       140 ~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g  194 (285)
T 3kea_A          140 NDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL  194 (285)
T ss_dssp             TCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCB
T ss_pred             CCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCC
Confidence            9999999999999332222378999999999999999999999999999988765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=3.7e-30  Score=165.13  Aligned_cols=128  Identities=23%  Similarity=0.290  Sum_probs=121.0

Q ss_pred             CCCccHHHHHHHhC--CHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCC-----CCCCCCCCCcHH
Q psy6445           2 QVGSSPLHYAAKKN--KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID-----VNAQDIVGSSPL   73 (134)
Q Consensus         2 ~~g~~~l~~a~~~~--~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l   73 (134)
                      ..|.||||+|+..|  +.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+     ++..+..|.|||
T Consensus       136 ~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L  215 (364)
T 3ljn_A          136 CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL  215 (364)
T ss_dssp             ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence            47999999999999  999999999999 5678899999999999999999999999999988     999999999999


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      |+|+..++.+++++|+++| +++..+..|.|||++|+..|+.+++++|+++|++++.
T Consensus       216 ~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  272 (364)
T 3ljn_A          216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI  272 (364)
T ss_dssp             HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhh
Confidence            9999999999999999999 8899999999999999999999999999999877643

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.97  E-value=6.4e-30  Score=141.62  Aligned_cols=112  Identities=20%  Similarity=0.273  Sum_probs=103.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +..|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..++.+++++|++.|.+++.++..|.||+|+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            357899999999999999999999998 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEG  112 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~  112 (134)
                      ++.+++++|++.+ +.+..+..|.||+++|...+
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999999 88899999999999995443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.6e-30  Score=158.33  Aligned_cols=134  Identities=26%  Similarity=0.394  Sum_probs=104.7

Q ss_pred             CCCCccHHHHHHHhCCHH-HHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLD-IAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~-~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                      |..|.|||+.|+..+..+ ++++|++.| +++..+..|.||||+|+..|+.+++++|++.+.+++..+..|.||+++|+.
T Consensus        49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~  128 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ  128 (269)
T ss_dssp             --------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccc
Confidence            356889999999988765 788999999 568889999999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.| +++..+..|.|||++|+..|+.+++++|+++|++++.++..|
T Consensus       129 ~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g  185 (269)
T 4b93_B          129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG  185 (269)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTS
T ss_pred             cChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCC
Confidence            99999999999999 889999999999999999999999999999999999988765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=8.7e-29  Score=150.36  Aligned_cols=134  Identities=25%  Similarity=0.309  Sum_probs=108.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~   78 (134)
                      |..|.+||+.|++.|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.+.+++... ..+.||+++|+.
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            567788888888888888888888887 446677788888888888888888888888887776544 347888888888


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|++.+ +....+..+.|||++|+..++.+++++|+++|++++.++..|
T Consensus        86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC
Confidence            88888888888888 777777888888888888888888888888888888776654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=1.4e-30  Score=153.48  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             CCccHHHHHHHhCCH----HHHHHHHhhC-cccccccCCCChhhHHHhhCC------HHHHHHHHhcCCCCCCCCCCCC-
Q psy6445           3 VGSSPLHYAAKKNKL----DIAKILIESN-RCSLENKMKKTPLHLAAQEGY------VDMCKLLIKHQIDVNAQDIVGS-   70 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~----~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~------~~~~~~l~~~~~~~~~~~~~~~-   70 (134)
                      .|.||||+|+..++.    +++++|++.| +++.++..|.||||+|+..++      .+++++|++.|++++.+|..|. 
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  116 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI  116 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTB
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCc
Confidence            466666666666653    3666666666 345566666666666666655      3566666666666666666666 


Q ss_pred             cHHHHHHHh-----CcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcc
Q psy6445          71 SPLHYAAKK-----NKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQ  130 (134)
Q Consensus        71 t~l~~a~~~-----~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  130 (134)
                      ||+|+|+..     +..+++++|++ .| +++.++..|.|||++|+..++.+++++|.++....+.+
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            666666662     23446666666 56 66666666666666666666666666666554433333

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=5.1e-29  Score=160.51  Aligned_cols=132  Identities=28%  Similarity=0.395  Sum_probs=87.2

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC----cccccccCCCChhhHHHhhC---CHHHHHHHHhcCCCCCC--------CCC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN----RCSLENKMKKTPLHLAAQEG---YVDMCKLLIKHQIDVNA--------QDI   67 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~--------~~~   67 (134)
                      .|.||||.|+..|+.+++++|++.+    +.+..+..|.||||+|+..+   +.+++++|++.|.+++.        .+.
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  277 (373)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc
Confidence            3444444444444444444444443    22344555666666666655   56666666666666654        345


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          68 VGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        68 ~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .|.||||+|+..++.+++++|++.+  +++..+..|.|||++|+..|+.+++++|+++|++++.+|..|
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g  346 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  346 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCC
Confidence            6777888888888888888887654  666777778888888888888888888888888887777654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=3.7e-29  Score=159.26  Aligned_cols=133  Identities=29%  Similarity=0.437  Sum_probs=123.9

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +.|.++|+.|++.|+.+.++.++...  ..+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence            35789999999999999999999864  4567888999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|++.| +.+..+..+.|||++|+..++.+++++|+++|++++..+..|
T Consensus       102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  157 (351)
T 3utm_A          102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG  157 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC
Confidence            9999999999999 888899999999999999999999999999999998877654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=149.08  Aligned_cols=131  Identities=32%  Similarity=0.470  Sum_probs=66.5

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc-
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK-   81 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-   81 (134)
                      |.||||.|+..|+.+++++|++.+ +.+..+..|.+|||+|+..|+.+++++|++.|.+++..+..|.||+++|+..++ 
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence            344444444444444444444443 223333444444444444444444444444444444444444444444443332 


Q ss_pred             HHHHHHHHhcC-CCCCCCC-CCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          82 LDIAKILIESN-RCSLENK-MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        82 ~~~~~~Ll~~~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|++.+ +.+..+. .+.|||++|+..++.+++++|+++|++++.+|..|
T Consensus       156 ~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  210 (240)
T 3eu9_A          156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG  210 (240)
T ss_dssp             STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTS
T ss_pred             HHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            34444444444 3333343 56677777777777777777777777777776554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-28  Score=158.92  Aligned_cols=134  Identities=23%  Similarity=0.328  Sum_probs=123.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcC---CCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ---IDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~---~~~~~~~~~~~t~l~~a   76 (134)
                      |..|.||||.|+..|+.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.+   .+++..+..|.||+|+|
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence            578999999999999999999999999 55788899999999999999999999999987   78999999999999999


Q ss_pred             HHhC---cHHHHHHHHhcC-CCCC--------CCCCCCChhhHHHhhCCHHHHHHHHhcC-CCCCcccccC
Q psy6445          77 AKKN---KLDIAKILIESN-RCSL--------ENKMKKTPLHLAAQEGHVDMCKLLIKHQ-IDVNAQDIEA  134 (134)
Q Consensus        77 ~~~~---~~~~~~~Ll~~~-~~~~--------~~~~~~t~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g  134 (134)
                      +..+   +.+++++|++.| +.+.        .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9998   899999999998 5554        5668999999999999999999999886 9999988766

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=153.40  Aligned_cols=124  Identities=27%  Similarity=0.394  Sum_probs=116.5

Q ss_pred             CCCCccHHHHHH-----HhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAA-----KKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~-----~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      |..|.||||.|+     ..++.+++++|++.+. ....+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus       142 ~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh  221 (276)
T 4hbd_A          142 NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM  221 (276)
T ss_dssp             CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            568999999999     7789999999999995 4667788999999999999999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          75 YAAKKNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      +|+..++.+++++|++ .| +++..+..|.|||++|+..|+.+++++|++++
T Consensus       222 ~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999 78 88899999999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=3.8e-28  Score=154.46  Aligned_cols=131  Identities=27%  Similarity=0.362  Sum_probs=104.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhh-C-cccccccCCCChhhHHHhhCC----HHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGY----VDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      ++.|.||||.|++.|+.+++++|+++ | +.+..+..|.++++.++..+.    .+++++|++.|++++.++..|.||||
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~  244 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  244 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            35689999999999999999999975 5 456777788888777665443    35777888888888888888888888


Q ss_pred             HHHHhCcHHHHHHHHhc-C-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          75 YAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~-~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      +|+..++.+++++|++. + +++.++..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       245 ~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          245 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            88888888888888765 4 677777888888888888888888888888888877654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=4.5e-29  Score=147.09  Aligned_cols=131  Identities=15%  Similarity=0.094  Sum_probs=117.5

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYV----DMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +.++|+.|++.|+.+.++.++..+.....+..|.||||+|+..++.    +++++|++.|++++.++..|.||||+|+..
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            4689999999999999999998875444447899999999999975    599999999999999999999999999999


Q ss_pred             Cc------HHHHHHHHhcC-CCCCCCCCCC-ChhhHHHhhC-----CHHHHHHHHh-cCCCCCcccccC
Q psy6445          80 NK------LDIAKILIESN-RCSLENKMKK-TPLHLAAQEG-----HVDMCKLLIK-HQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~------~~~~~~Ll~~~-~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~L~~-~g~~~~~~~~~g  134 (134)
                      ++      .+++++|++.| +++..+..|. ||||+|+..+     ..+++++|++ +|++++.+|..|
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G  154 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG  154 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC
Confidence            87      67899999999 8999999999 9999999844     4569999999 999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.96  E-value=8.6e-29  Score=145.56  Aligned_cols=110  Identities=24%  Similarity=0.263  Sum_probs=102.3

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~   80 (134)
                      ..|.||||.|+..|+.++++.|++..+.+..+..|.||||+|+..|+.+++++|++.|.+++..+ ..|.||+|+|+..+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            36789999999999999999999933668889999999999999999999999999999999888 88999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhh
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~  111 (134)
                      +.+++++|+++| +++..+..|.|||++|+..
T Consensus       122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          122 RPEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            999999999999 8889999999999998775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.96  E-value=6.8e-29  Score=151.89  Aligned_cols=123  Identities=23%  Similarity=0.265  Sum_probs=113.3

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~   80 (134)
                      .|.||||.|++.|+.++++.|++ + +.+..+..|.||||+|+..|+.+++++|++.|.+++..+ ..|.||||+|+..+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            57899999999999999999999 6 668889999999999999999999999999999999888 78999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHH----------------hhCCHHHHHHHHhcCCC
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAA----------------QEGHVDMCKLLIKHQID  126 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~----------------~~~~~~~~~~L~~~g~~  126 (134)
                      +.+++++|+++| +++..+..|.|||++|+                ..|+.+++++|++.+.+
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            999999999999 88889999999988887                66889999999986443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.95  E-value=9.3e-27  Score=144.82  Aligned_cols=124  Identities=20%  Similarity=0.235  Sum_probs=114.7

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhCcc-------cccccCCCChhhHHHhh---CCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESNRC-------SLENKMKKTPLHLAAQE---GYVDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~~~-------~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      .++|+.|+..++.+.++.+++.+..       ...+..|.||||+|+..   ++.+++++|++.|++++.++..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4689999999999999999998832       23367899999999999   8999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCC
Q psy6445          75 YAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN  128 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  128 (134)
                      +|+..++.+++++|+++| +++..+..|.|||++|+..++.+++++|+++|++..
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999 899999999999999999999999999999988643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=147.73  Aligned_cols=124  Identities=22%  Similarity=0.254  Sum_probs=114.6

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhCc-ccc------cccCCCChhhHHHhh---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESNR-CSL------ENKMKKTPLHLAAQE---GYVDMCKLLIKHQIDVNAQDIVGSSPL   73 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~~-~~~------~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l   73 (134)
                      +.++|+.|+..|+.+.++.|++.+. .+.      .+..|.||||+|+..   ++.+++++|+++|++++.++..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            3467999999999999999999884 343      578899999999997   899999999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      |+|+..++.+++++|+++| +++..+..|.|||++|+..++.+++++|+++|++.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            9999999999999999999 88899999999999999999999999999988653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.4e-26  Score=122.33  Aligned_cols=90  Identities=43%  Similarity=0.751  Sum_probs=48.2

Q ss_pred             CCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCH
Q psy6445          36 KKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHV  114 (134)
Q Consensus        36 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~  114 (134)
                      |.||||+|+..|+.+++++|++.|.+++.++..|.||+|+|+..++.+++++|++.| +++..+..|.|||++|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            445555555555555555555555555555555555555555555555555555555 4445555555555555555555


Q ss_pred             HHHHHHHhcCC
Q psy6445         115 DMCKLLIKHQI  125 (134)
Q Consensus       115 ~~~~~L~~~g~  125 (134)
                      +++++|+++|+
T Consensus        82 ~~~~~Ll~~ga   92 (93)
T 1n0q_A           82 EVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            55555555554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.95  E-value=7.6e-27  Score=149.86  Aligned_cols=123  Identities=20%  Similarity=0.300  Sum_probs=114.6

Q ss_pred             CccHHHHHHHh-CCHHHHHHHHhhC-cccccc--cCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           4 GSSPLHYAAKK-NKLDIAKILIESN-RCSLEN--KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         4 g~~~l~~a~~~-~~~~~~~~ll~~~-~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +.++||.|+.. ++.++++.|++.| +.+..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45799999999 9999999999999 456666  7899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      ++.+++++|+++| +++..+..|.|||++|+..++.+++++|+..+..
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999 8899999999999999999999999999987643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.7e-26  Score=129.99  Aligned_cols=104  Identities=31%  Similarity=0.473  Sum_probs=100.0

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHH
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA  109 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~  109 (134)
                      .++..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+..++.+++++|++.+ +.+..+..+.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999 88889999999999999


Q ss_pred             hhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         110 QEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       110 ~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..++.+++++|+++|++++.+|..|
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g  109 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFG  109 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            9999999999999999999998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=3e-26  Score=121.04  Aligned_cols=90  Identities=41%  Similarity=0.737  Sum_probs=85.1

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK   81 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~   81 (134)
                      +|.||||.|+..|+.+++++|++.+ +.+.++..|.||||+|+..|+.+++++|++.|.+++.++..|.||+|+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            5899999999999999999999999 568889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy6445          82 LDIAKILIESN   92 (134)
Q Consensus        82 ~~~~~~Ll~~~   92 (134)
                      .+++++|++.|
T Consensus        81 ~~~~~~Ll~~g   91 (93)
T 1n0q_A           81 LEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999887

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=8.5e-26  Score=143.64  Aligned_cols=129  Identities=24%  Similarity=0.301  Sum_probs=120.0

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccc-cCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLEN-KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      +|.|||+.|++.|++++|++|+++| +++..+ ..|.||||+|+..|+.+++++|+++|++++..+..+.++++.+...+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            3679999999999999999999999 455554 56999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      ...+...++..+ +.+..+..|.||+++|+..++.+++++|+++|++++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence            999999999988 888999999999999999999999999999999988654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.94  E-value=1.5e-26  Score=126.62  Aligned_cols=103  Identities=38%  Similarity=0.524  Sum_probs=70.5

Q ss_pred             cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        32 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      ++..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.+ +.+..+..+.|||++|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            4566667777777777777777777666666666666677777777777777777777666 566666667777777777


Q ss_pred             hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|+++|++++.++..|
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~  108 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGS  108 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCC
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccc
Confidence            777777777777777766665543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=1e-25  Score=124.68  Aligned_cols=102  Identities=30%  Similarity=0.380  Sum_probs=95.6

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~  111 (134)
                      +..|.+|||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.+ +++..+..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            456789999999999999999999999999999999999999999999999999999999 8888999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccccC
Q psy6445         112 GHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       112 ~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|+++|++++.+|.+|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g  106 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDG  106 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999999999998776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.94  E-value=2.2e-26  Score=125.96  Aligned_cols=105  Identities=31%  Similarity=0.430  Sum_probs=96.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |++|.||||.|+..++.+++++|++.+ +.+..+..|.||||+|+..++.+++++|++.|.+++..+..|.||+++|+..
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Confidence            688999999999999999999999999 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChh
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPL  105 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l  105 (134)
                      ++.+++++|+++| +++..+..+.+|-
T Consensus        86 ~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           86 GHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999 7877887777763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=5e-26  Score=127.91  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=100.2

Q ss_pred             cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCC-CCChh
Q psy6445          28 RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKM-KKTPL  105 (134)
Q Consensus        28 ~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~-~~t~l  105 (134)
                      +.+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+. ++.+++++|++.+ +++..+.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            346678899999999999999999999999999999999999999999999 9999999999999 88888998 99999


Q ss_pred             hHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         106 HLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       106 ~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      |+|+..++.+++++|+++|++++.+|..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWG  111 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            99999999999999999999999988765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7.3e-25  Score=123.16  Aligned_cols=102  Identities=35%  Similarity=0.492  Sum_probs=96.3

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~  111 (134)
                      ...+.+|||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+ +++..+..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            456789999999999999999999999999999999999999999999999999999999 8888999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccccC
Q psy6445         112 GHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       112 ~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.+++++|+++|++++.+|..|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g  113 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFG  113 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCC
Confidence            99999999999999999988765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.6e-24  Score=119.09  Aligned_cols=100  Identities=44%  Similarity=0.735  Sum_probs=95.6

Q ss_pred             CCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCC
Q psy6445          35 MKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGH  113 (134)
Q Consensus        35 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~  113 (134)
                      +|.||||.|+..|+.+++++|++.+.+++..+..|.||+|+|+..++.+++++|++.+ ++...+..+.|||++|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            4889999999999999999999999999999999999999999999999999999999 888899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccC
Q psy6445         114 VDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       114 ~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|+++|++++.+|..|
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g  101 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNG  101 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHHHcCCCCcccCCCC
Confidence            999999999999999888765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=3.7e-25  Score=138.98  Aligned_cols=109  Identities=24%  Similarity=0.238  Sum_probs=94.1

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      |..|.||||+|+..   ++.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|++++..|..|.|||++|
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A  266 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA  266 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHH
T ss_pred             CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            45789999999997   8999999999999 5678899999999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCH
Q psy6445          77 AKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHV  114 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~  114 (134)
                      +..++.+++++|++.+..     .+.|||++|+..|+.
T Consensus       267 ~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          267 RKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             HHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence            999999999999998832     478999999987753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.3e-25  Score=132.47  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             HHHHHhhCc-c---cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CC
Q psy6445          20 AKILIESNR-C---SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RC   94 (134)
Q Consensus        20 ~~~ll~~~~-~---~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~   94 (134)
                      ++.|++.+. +   ...+..+.++||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.| ++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            456777773 3   234456678899999999999999999999999999999999999999999999999999999 88


Q ss_pred             CCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          95 SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        95 ~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      +..+..|.|||++|+..|+.+++++|++.|++++.++
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            8999999999999999999999999999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=2.9e-24  Score=129.55  Aligned_cols=103  Identities=29%  Similarity=0.455  Sum_probs=97.7

Q ss_pred             cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhc-C-CCCCCCCCCCChhhHHH
Q psy6445          32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAA  109 (134)
Q Consensus        32 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~-~~~~~~~~~~t~l~~a~  109 (134)
                      .+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++. + +.+..+..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            355788999999999999999999999999999999999999999999999999999998 7 88889999999999999


Q ss_pred             hhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         110 QEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       110 ~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ..|+.+++++|+++|++++.+|.+|
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g  173 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEK  173 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTS
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCC
Confidence            9999999999999999999998876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.1e-24  Score=123.87  Aligned_cols=103  Identities=21%  Similarity=0.267  Sum_probs=95.6

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCC-hhhHH
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKT-PLHLA  108 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t-~l~~a  108 (134)
                      ..+..|.+|||+|+..|+.+++++|++.|.+++..+..|.||||+|+ .++.+++++|++.| +++..+..+.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            45678899999999999999999999999999999999999999995 99999999999999 88899999999 99999


Q ss_pred             HhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         109 AQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       109 ~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +..++.+++++|+++|++++.+|..|
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999999999998765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=1.2e-26  Score=149.32  Aligned_cols=121  Identities=16%  Similarity=0.076  Sum_probs=94.5

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCcc----cccccCCCChhhHHHhhCCHHHHHHHHhcCCCC---CCCCCCCCcHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNRC----SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV---NAQDIVGSSPLHY   75 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~~t~l~~   75 (134)
                      ++.||||.|++.|+.+++++|++.+..    ...+..+.+|||+|+..|+.+++++|++.|+++   +..+.. .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            456899999999999999999988752    133456678999999999999999999998642   222222 789999


Q ss_pred             HHHhCcHHHHHHHHhcC-CCCC--CCCCCCChhhHHH-hhCCHHHHHHHHhcC
Q psy6445          76 AAKKNKLDIAKILIESN-RCSL--ENKMKKTPLHLAA-QEGHVDMCKLLIKHQ  124 (134)
Q Consensus        76 a~~~~~~~~~~~Ll~~~-~~~~--~~~~~~t~l~~a~-~~~~~~~~~~L~~~g  124 (134)
                      |+..|+.+++++|+++| +...  .+..|.|||++|+ ..|+.+++++|++.|
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            99999999999999988 5554  6677889999999 999999999988765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2e-24  Score=126.87  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=95.4

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCC-CCCCChhhHHHh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN-KMKKTPLHLAAQ  110 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~-~~~~t~l~~a~~  110 (134)
                      +..|.||||.|+..|+.+++++|++ +.+++..+..|.||||+|+..++.+++++|++.| +++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578899999999999999999999 9999999999999999999999999999999999 777777 889999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|+++|++++.+|.+|
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g  143 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERG  143 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCC
Confidence            999999999999999999998776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=3e-27  Score=152.16  Aligned_cols=122  Identities=13%  Similarity=0.147  Sum_probs=107.3

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhCc----ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC--CCCCCCcHHHHH
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESNR----CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA--QDIVGSSPLHYA   76 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~~~~~t~l~~a   76 (134)
                      .|.||||+|+..|+.++|++|+++++    .+..+.+ .||||+|+..|+.+++++|++.|.+++.  .+..|.||||+|
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA  205 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHH
Confidence            46789999999999999999999994    2333334 8999999999999999999999998876  777899999999


Q ss_pred             H-HhCcHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCccc
Q psy6445          77 A-KKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD  131 (134)
Q Consensus        77 ~-~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  131 (134)
                      + ..|+.+++++|++.|.      .+.||+++|+..|+.+++++|++.|++++.++
T Consensus       206 a~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~  255 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH  255 (376)
T ss_dssp             HSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence            9 9999999999998663      27899999999999999999999988775543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.2e-24  Score=138.14  Aligned_cols=116  Identities=21%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             HHHHHHhCCHHHHHHHHhhC-cccc-cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc---H
Q psy6445           8 LHYAAKKNKLDIAKILIESN-RCSL-ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK---L   82 (134)
Q Consensus         8 l~~a~~~~~~~~~~~ll~~~-~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~---~   82 (134)
                      .|.|+..+..++++.|++.+ +.+. .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++   .
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            47777777788889999888 5576 79999999999999999999999999999999999999999999999998   6


Q ss_pred             HHHHHHHhcC--CCCCCCCCCCChhhHHHh----hCCHHHHHHHHhc
Q psy6445          83 DIAKILIESN--RCSLENKMKKTPLHLAAQ----EGHVDMCKLLIKH  123 (134)
Q Consensus        83 ~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~----~~~~~~~~~L~~~  123 (134)
                      ++++.|++.+  +.+..+..|.||||+|+.    .++.+++++|++.
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            7777777765  577889999999999999    8999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=6.8e-24  Score=129.76  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=95.1

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCC-CCCCChhhHHHh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLEN-KMKKTPLHLAAQ  110 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~-~~~~t~l~~a~~  110 (134)
                      +..|.||||.|+..|+.+++++|++ +.+++.++..|.||||+|+..++.+++++|+++| +++..+ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4578899999999999999999999 9999999999999999999999999999999999 777777 789999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCcccccC
Q psy6445         111 EGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       111 ~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .++.+++++|+++|++++.+|..|
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g  144 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERG  144 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCC
Confidence            999999999999999999998776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.90  E-value=4.9e-23  Score=111.82  Aligned_cols=90  Identities=30%  Similarity=0.483  Sum_probs=60.6

Q ss_pred             ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHH
Q psy6445          31 LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA  109 (134)
Q Consensus        31 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~  109 (134)
                      ..+.+|.++||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++.| +.+..+..|.|||++|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34556666777777777777777777777666666666777777777777777777777666 66666666777777777


Q ss_pred             hhCCHHHHHHH
Q psy6445         110 QEGHVDMCKLL  120 (134)
Q Consensus       110 ~~~~~~~~~~L  120 (134)
                      ..++.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            77777766655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=9.4e-23  Score=126.82  Aligned_cols=93  Identities=18%  Similarity=0.329  Sum_probs=88.4

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      |..|.||||.|+..   ++.+++++|++.| +.+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||+|+|
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  245 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  245 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHH
Confidence            46799999999999   8999999999999 5688899999999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhcCC
Q psy6445          77 AKKNKLDIAKILIESNR   93 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~~   93 (134)
                      +..++.+++++|++++.
T Consensus       246 ~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          246 KRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHTTCHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            99999999999999883

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=3.1e-22  Score=108.65  Aligned_cols=88  Identities=32%  Similarity=0.437  Sum_probs=83.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |.+|.||||.|+..|+.+++++|++.+ +.+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+++|+..
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            568999999999999999999999998 5577889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHH
Q psy6445          80 NKLDIAKIL   88 (134)
Q Consensus        80 ~~~~~~~~L   88 (134)
                      ++.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999987

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=4e-22  Score=128.04  Aligned_cols=127  Identities=23%  Similarity=0.288  Sum_probs=87.1

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKN   80 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~   80 (134)
                      ..|.||||+|+..|+.+++++|++++ +.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..+
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g  312 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA  312 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC
Confidence            68999999999999999999999999 56888999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcC----CCCCCCCCCCChhhHHHhhCC--HHHHHHHHhcCCCCC
Q psy6445          81 KLDIAKILIESN----RCSLENKMKKTPLHLAAQEGH--VDMCKLLIKHQIDVN  128 (134)
Q Consensus        81 ~~~~~~~Ll~~~----~~~~~~~~~~t~l~~a~~~~~--~~~~~~L~~~g~~~~  128 (134)
                      +.+++++|+..+    .....+..+.|+++++.....  .+-.+.|...+.+++
T Consensus       313 ~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          313 NADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             CHHHHHHHHHHHC-----------------------------------------
T ss_pred             CHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcC
Confidence            999999998765    223445567788887655432  234455555555443

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=83.00  E-value=1.2  Score=18.61  Aligned_cols=19  Identities=21%  Similarity=0.247  Sum_probs=14.3

Q ss_pred             HHHHHHHhCCHHHHHHHHh
Q psy6445           7 PLHYAAKKNKLDIAKILIE   25 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~   25 (134)
                      .+..||+.|+++.++.|-.
T Consensus        16 qiyvA~seGd~etv~~Le~   34 (40)
T 1gp8_A           16 QMDAAASKGDVETYRKLKA   34 (40)
T ss_dssp             HHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHH
Confidence            3567888888888887744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 1e-25
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENK------MKKTPLHLAAQEGYVDMCKLLIK 57
           G++ L  AA+K  +++ KIL++     +              L  +       +  LL+ 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVD 115
           H  DVN +   G +PL  A +K  L + + L+E     +   +   KT L LA +     
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 116 MCKLLIKHQIDVNAQDI 132
           + +LL K     +  D+
Sbjct: 268 IAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G +PL  A +K  L + + L+E     +   +   KT L LA +     + +LL K    
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 62  VNAQDIV 68
            +  D+V
Sbjct: 279 TDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 5e-12
 Identities = 41/175 (23%), Positives = 60/175 (34%), Gaps = 47/175 (26%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLI----- 56
            +  L  A +   +D+ + L+E   N    E +   TPLH A Q    D+ +LL+     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 57  ----------------------------KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
                                           DVN  D  G +    AA   K+   K L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 89  IES-----------NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ-IDVNAQD 131
            +                   K   T L  AA++GHV++ K+L+     DVNA D
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 9e-12
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 27  NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ-IDVNAQDIVGSSPLHYAAKKNK---- 81
                  K   T L  AA++G+V++ K+L+     DVNA D +G + L +A   +     
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 82  LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ-IDVNAQDIE 133
             I  +L++     ++  +  KTPL LA ++ H+ + + L++ + I++N  D +
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 50/180 (27%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS--------------------------------- 30
           G +PLH A + ++ DI ++L+                                       
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

Query: 31  -LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIV----------GSSPLHYAAKK 79
              +    T    AA  G V   K L K   +VN +             G++ L  AA+K
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 80  NKLDIAKILIESNRCSLENK------MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
             +++ KIL++     +              L  +       +  LL+ H  DVN +   
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 9e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
             L  A Q   VD+ + L++   +VN Q+ E
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEE 37

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-23
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 35/160 (21%)

Query: 7   PLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
           PLH A+    L I K L++     ++ N   +TPLH+AA+ G+ ++ K L++++  VNA+
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 66  DIVGSSPLHYAAKKNKLDIAKILIESN--------------------------------- 92
                +PLH AA+    ++ K+L+E+N                                 
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 93  -RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
              +   K   TPLH+AA+ G V + +LL++     NA  
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 162

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 8e-23
 Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSL 96
           TPLH+A+  G++ + K L++     N  ++   +PLH AA+    ++AK L+++  + + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 97  ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
           + K  +TPLH AA+ GH +M KLL+++  + N
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 3e-21
 Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AA++   ++  +L+      +L NK   TPLHL AQEG+V +  +LIKH + V
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLI 121
           +A   +G +PLH A+    + + K L++     + + K+  +PLH AAQ+GH D+  LL+
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 122 KHQIDVNAQDIE 133
           K+    N    +
Sbjct: 351 KNGASPNEVSSD 362

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-19
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 35/165 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             +PLH AA+    ++AK L+++  + + + K  +TPLH AA+ G+ +M KLL+++  + 
Sbjct: 33  VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 92

Query: 63  ---------------------------------NAQDIVGSSPLHYAAKKNKLDIAKILI 89
                                                  G +PLH AAK  K+ +A++L+
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 152

Query: 90  ESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           E +   +   K   TPLH+A    ++D+ KLL+      ++    
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 197

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 8e-19
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH  A++  + +A +LI+         +M  TPLH+A+  G + + K L++HQ DV
Sbjct: 264 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 323

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL- 120
           NA+  +G SPLH AA++   DI  +L+++    +  +    TPL +A + G++ +  +L 
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

Query: 121 --IKHQIDVNAQD 131
                   V   D
Sbjct: 384 VVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 6e-18
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH A   N LDI K+L+              TPLH+AA++  V++ + L+++    
Sbjct: 165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA+ + G +PLH AA++   ++  +L+      +L NK   TPLHL AQEGHV +  +LI
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 122 KHQIDVNAQ 130
           KH + V+A 
Sbjct: 285 KHGVMVDAT 293

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK  K+ +A++L+E +   +   K   TPLH+A     +D+ KLL+      
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDMCKLLI 121
           ++    G +PLH AAK+N++++A+ L++    +  E+    TPLHLAAQEGH +M  LL+
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251

Query: 122 KHQIDVNAQDIE 133
             Q + N  +  
Sbjct: 252 SKQANGNLGNKS 263

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-14
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 35/164 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN----------------------------------RC 29
             +PLH AA+    ++ K+L+E+N                                    
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 125

Query: 30  SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
           +   K   TPLH+AA+ G V + +LL++     NA    G +PLH A   N LDI K+L+
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 90  ESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
                         TPLH+AA++  V++ + L+++    NA+ +
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 49/130 (37%), Positives = 81/130 (62%), Gaps = 2/130 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLH AAK+N++++A+ L++    +  E+    TPLHLAAQEG+ +M  LL+  Q + 
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 257

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N  +  G +PLH  A++  + +A +LI+         +M  TPLH+A+  G++ + K L+
Sbjct: 258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 317

Query: 122 KHQIDVNAQD 131
           +HQ DVNA+ 
Sbjct: 318 QHQADVNAKT 327

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           TPLH+A+  GH+ + K L++     N  +++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVK 32

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 3e-16
 Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G +PLHYAA KN+ +IA +L+E       ++  + T +H AA +G + M  +L+ ++   
Sbjct: 103 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 162

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           N QD  G++PLH A  + +++ AK+L+       +ENK +KTPL +A   G   + K ++
Sbjct: 163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

Query: 122 K 122
           +
Sbjct: 222 E 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 8e-15
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           N+   TPLH AA +   ++  +L++   + +A+D   ++ +H AA K  L +  IL+   
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 93  RC-SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
              ++++    TPLHLA  E  V+  KLL+     +  ++ E
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE 201

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 4e-12
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 8   LHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
           +   A   KL+  K  I +++       +  +T LH A   G+ ++ + L++  + VN +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 66  DIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
           D  G SPLH AA   + +I K L+    + +  N+   TPLH AA +   ++  +L++  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 125 IDVNAQD 131
            + +A+D
Sbjct: 127 ANPDAKD 133

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 4e-11
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLE-NKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             + LH+A      +I + L++      + +    +PLH+AA  G  ++ K L+     V
Sbjct: 37  SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 96

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI 121
           NA +  G +PLHYAA KN+ +IA +L+E       ++  + T +H AA +G++ M  +L+
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 156

Query: 122 KHQIDVNAQDIE 133
            ++   N QD E
Sbjct: 157 YYKASTNIQDTE 168

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.0 bits (165), Expect = 4e-15
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 5   SSPLHYAAKKNKLDIAKILI----ESNRCSLE--------NKMKKTPLHLAAQEGY---V 49
           +  +     KN   + ++L       NR + +            +    +AA  G    +
Sbjct: 47  AIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSAL 106

Query: 50  DMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE---SNRCSLENKMKKTPLH 106
           D   LL+     V             AA+   L +   L E   +   ++          
Sbjct: 107 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 166

Query: 107 LAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
           LAA+ GH+ +   L +         I+A
Sbjct: 167 LAAENGHLHVLNRLCELAPTEATAMIQA 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.9 bits (157), Expect = 5e-14
 Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 10/141 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE--SNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
                  AA          L    ++   ++           LAA+ G++ +   L +  
Sbjct: 90  SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 60  IDVNAQDI--VGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGH 113
                  I          AA+   L +   L E         ++ +        A   GH
Sbjct: 150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

Query: 114 VDMCKLLIKHQIDVNAQDIEA 134
            ++   L+   + +   +I  
Sbjct: 210 HNVINFLLDCPVMLAYAEIHE 230

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.8 bits (136), Expect = 4e-11
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 15/123 (12%)

Query: 7   PLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
              +  +  +  +   +        E         L+  +G  D+             Q 
Sbjct: 226 AEIHEFEYGEKYVNPFIARHVNRLKEMH---DAFKLSNPDGVFDL------VTKSECLQG 276

Query: 67  IVGSSPLHYAAKKNKLDIAKILIESNRCSLE------NKMKKTPLHLAAQEGHVDMCKLL 120
                 L     +  LD  + L+                     L LA + G+   C LL
Sbjct: 277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

Query: 121 IKH 123
           +  
Sbjct: 337 LSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 17/144 (11%)

Query: 6   SPLHYAAKKNKLDIAKILIESNRCSLENKMKK--TPLHLAAQEGYVDMCKLLIKHQIDVN 63
             L         ++ +  I +N  SL     K    + L   +    + +LL  +    N
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN 73

Query: 64  A-----------QDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLE--NKMKKTPLHLA 108
                       + I        AA          L    ++   ++           LA
Sbjct: 74  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Query: 109 AQEGHVDMCKLLIKHQIDVNAQDI 132
           A+ GH+ +   L +         I
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMI 157

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 3e-10
 Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 12/127 (9%)

Query: 4   GSSPLHYAAKKNKLDIAKILIE---SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
                  AA+   L +   L E   +   ++          LAA+ G++ +   L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 61  DVN---AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMC 117
                  Q     +    A  +   ++   L++                   + G   + 
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------LAYAEIHEFEYGEKYVN 239

Query: 118 KLLIKHQ 124
             + +H 
Sbjct: 240 PFIARHV 246

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 6e-10
 Identities = 16/155 (10%), Positives = 34/155 (21%), Gaps = 21/155 (13%)

Query: 1   RQVGSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLI 56
           +         AA+   L +   L E         ++ +        A   G+ ++   L+
Sbjct: 158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

Query: 57  KHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRC-----------------SLENK 99
              + +   +I                    L E +                    L+  
Sbjct: 218 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 277

Query: 100 MKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
                L     E  +D  + L+             
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.1 bits (162), Expect = 6e-15
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 4   GSSPLHYAAKKNKLDIAKI--LIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LHYAA+ + + I K     + +    +++  KTP+ LAAQEG +++   LI+    
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 246

Query: 62  VNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           V A D    +    A   N  +I  I   
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 2e-11
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQ-IDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           E    +T LH AAQ   + + K L+  +  + + QD  G +P+  AA++ ++++   LI+
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 91  SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ 124
                   +    T   LA    H ++  +  + +
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 1e-09
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 6   SPLH-YAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI---- 60
           SP+  +        I + +   +   ++ +  +T LH  A     +  + LI H+     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 61  ----DVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQE-GHVD 115
               DVNA D   ++PL  A    +  +   L+++          +      A       
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 116 MCKLLIKH 123
           M   ++  
Sbjct: 122 MMVYMLNS 129

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 5e-09
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 51  MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKI--LIESNRCSLENKMKKTPLHLA 108
             K+        +++   G + LHYAA+ + + I K     + +    +++  KTP+ LA
Sbjct: 169 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 228

Query: 109 AQEGHVDMCKLLIKHQIDVNAQDIE 133
           AQEG +++   LI+    V A D  
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDAT 253

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 37  KTPLHLAAQ-EGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCS 95
           ++P+ L  +  G   + + + +  +++        + LH+ A  +  + ++ LI      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 96  L---------ENKMKKTPLHLAAQEGHVDMC 117
                      +  + TPL LA       + 
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLV 90

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 4e-07
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 71  SPLH-YAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
           SP+  +        I + +   +   ++ +  +T LH  A     +  + LI H+  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 3e-13
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 55/183 (30%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN------------------------------------ 27
           G++PLH+      L++ K L++                                      
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

Query: 28  --RCSLENKMKKTPLHLAAQEGY-------------VDMCKLLIKHQIDVNAQDIVGSSP 72
                LE+ M +T LH                    + M  ++ K    + +      S 
Sbjct: 167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 73  LHYAAKKNKLDIAKILIESNRCSL----ENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVN 128
            +    + K  I + L      +     ++    T L++AA+ G++ +   L+ +  D  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 129 AQD 131
             +
Sbjct: 287 IAN 289

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 2e-11
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSL----ENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
             S  +    + K  I + L      +     ++    T L++AA+ G + +   L+ + 
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 60  IDVNAQDIVGSSPLHYAA 77
            D    +  G  P+ + A
Sbjct: 283 ADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 2   QVGSSPLHYAAKKNKLDIAKILIESNRCSLENKM---KKTPLHLAAQEGYVDMCKLLIKH 58
                    AA K  LDI    I   +          K++  +    E    + + L   
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 59  ---QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA 109
                 +NAQD  G + L+ AA+   + I   L++      + NK    P+   A
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES----- 91
            TPLH       +++ K L+KH  +    D +G S L  A K      +           
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 92  NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI 132
               LE+ M +T LH       +  C    K+ +D+    I
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 208

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 9e-07
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 1   RQVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH 58
           +    + L         ++   L    SNR S      +   H++      ++       
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 59  QIDVNAQ-DIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
           Q+++N   D  G++PLH+      L++ K L++        + M ++ L  A +  +   
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 117 C 117
            
Sbjct: 156 S 156

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 19/149 (12%)

Query: 4   GSSPLHYAAKKNKLDIAKILIES----NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ 59
           G + LH A           L+          L+N + +T LHLAA  G     + L    
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 60  IDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN---------------RCSLENKMKKTP 104
             V   +  G + LH A +      A +L++                 +    +      
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 105 LHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
              +      +        ++ + A++ +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYD 157

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 35  MKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
             +TPLHLA +     + +LL+K   D  A+   G +PL  A  +    +A++L  
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 1e-07
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 1   RQVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMKK---TPLHLAAQEGYVDMCKLLIK 57
                +P    ++ N  +  +   E  R  LE +              +    +  L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 58  HQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM 116
                  +   G +PLH A +     + ++L+++    +      +TPL  A    +  +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 117 CKLLIKH 123
            +LL  H
Sbjct: 241 ARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 5e-06
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 9   HYAAKKNKLDIAKILIESN---------------RCSLENKMKKTPLHLAAQEGYVDMCK 53
           H A +      A +L++                 +    +         +      +   
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 54  LLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQE 111
                ++ + A++  G +PLH A      ++ ++L ++     +      +TPLHLA + 
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 112 GHVDMCKLLIKHQIDVNAQD 131
               + +LL+K   D  A+ 
Sbjct: 203 QAASVLELLLKAGADPTARM 222

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.1 bits (144), Expect = 2e-12
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 32  ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES 91
             K   T LH+AA +GY ++ KLLI+ + DVN +D  G +PLH AA   K +  +IL+E+
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 92  N-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI 125
                  NK+ +T   +A ++    + +L  K  +
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.0 bits (141), Expect = 5e-12
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G + LH AA K   ++ K+LI++    ++++    TPLH AA  G  + C++L+++  D+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
            A + VG +    A +     + ++  + N
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 8e-10
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 27  NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK 86
           N  + +    +       +    D  + L    I+       G + LH AA K   ++ K
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 87  ILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           +LI++    ++++    TPLH AA  G  + C++L+++  D+ A +
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 8   LHYAAKKNKLDIAKILI-ESNRCSLENKMKK--------TPLHLAAQEGYVDMCKLLIKH 58
           +  A +K    + + +  E++      K KK             A   G  +    L++ 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIES-NRCSLENKMKKTPLHLAAQEGHVDMC 117
             D+N  ++ G + LH A   + +D+ K L+E+    +  +     PLH AA  G++D+ 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122

Query: 118 KLLIKHQIDVNAQDIE 133
           + LI     V A + E
Sbjct: 123 EYLISQGAHVGAVNSE 138

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQI 60
           G +PLH AA   K +  +IL+E+       NK+ +T   +A ++    + +L  K  +
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
             +    A      +    L+E     +  N    T LH A  +  VDM K L+++  ++
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGHVDMCK 118
           N  D  G  PLH AA    LDIA+ LI         N    TPL +A +E   ++ +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 9e-12
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 7   PLHYAAKKNKLDIAKILIESNRCSLENKMK-KTPLHLAAQEGYVDMCKLLIKHQIDVNAQ 65
           PL +A + N L + ++L++             + LH A+  G + + + L++   D + +
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 66  DIVGSSPLHYAAKKNKLDIAK 86
           +    +PL  A  +  +DI +
Sbjct: 207 NCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-10
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 22  ILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNK 81
           +   ++  +++ K  ++PL  A +   + M +LL++H  +VNAQ   GSS LH A+ +  
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 82  LDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCK 118
           L + + L+ S    SL+N    TPL +A     +D+ +
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 37  KTPLHLAAQEGYVDMCKLLIK----HQIDVNAQDIVGSSPLHYAAKKN-KLDIAKILIES 91
            TPLH+A  +G +     L+        +++  + +  +PLH A        +  ++   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 92  NRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
                 ++  +T  HLA +       + L+  
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-06
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGYVDMCKLLIKH 58
           G +PLH A  +  L     L+   +       + N +++TPLHLA       + +LL+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 59  QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK-----KTPLHLAAQEGH 113
                A D  G +  H A +       + L++S      +         T LH+A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 114 VDMCKLLIKHQID 126
            +  +LL++   D
Sbjct: 123 QETVQLLLERGAD 135

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 6e-06
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSS-PLHYAAKKNKLDIAKILIESNRCSL 96
           T LH+A      +  +LL++   D++A DI     PL +A + N L + ++L++      
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 171

Query: 97  ENKMK-KTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
                  + LH A+  G + + + L++   D + ++  
Sbjct: 172 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 209

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 69  GSSPLHYAAKKNKLDIAKILIESNRCS-----LENKMKKTPLHLAAQEGHVDMCKLLIKH 123
           G +PLH A  +  L     L+   +       + N +++TPLHLA       + +LL+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 124 QIDVN 128
                
Sbjct: 63  GASPM 67

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 102 KTPLHLAAQEGHVDMCKLLIK----HQIDVNAQD 131
            TPLH+A  +G++     L+        +++  +
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN 37

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 6e-10
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           +   KT LH AA     +   +L+ H  + +AQD    +PL  AA++   + +K L+++ 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 93  -RCSLENKMKKTPLHLAAQEGHVDMCKLL 120
               + + M + P  +A++  H D+ +LL
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.7 bits (122), Expect = 1e-09
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDV 62
           G + LH+AA  N  +   IL+  +     ++   +TPL LAA+EG  +  K L+ +  + 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 63  NAQDIVGSSPLHYAAKKNKLDIAKIL 88
              D +   P   A+++   DI ++L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 6e-08
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 36/166 (21%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCS--------------------------------- 30
           G + LH AA+  + D AK L+++   +                                 
Sbjct: 23  GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN 82

Query: 31  --LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL 88
                    TPL LAA+     M + LI    D+NA D  G + LH+AA  N  +   IL
Sbjct: 83  LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 142

Query: 89  IESNR-CSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
           +  +     ++   +TPL LAA+EG  +  K L+ +  +    D  
Sbjct: 143 LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM 188

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 1e-04
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 19  IAKILIES--NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA 76
           +   L+       +  +K  +T LHLAA+    D  K L+    D N+QD  G +PLH A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 77  AKKNKLDIAKI--LIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIE 133
              + + + +I     +   +       TPL LAA+     M + LI    D+NA D  
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 2e-08
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 23  LIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKKNK 81
           +       +++K  + PLH AA  G + + +LL    +  VN QD  G +PL +A  +  
Sbjct: 125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184

Query: 82  LDIAKILIESNRCSLE--NKMKKTPLHLAAQEGHVDMCKLLIKHQID 126
            D A +L+E      +  +        +A  E    + K  + + +D
Sbjct: 185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-08
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 38 TPLHLAAQEGYVDMCK-LLIKHQIDVNAQDIVGSSPLHYAAKKN 80
           PLH A  E      + LL      +  +D  G  PLH++    
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-08
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSL--ENKMKKTPLHLAAQEGYVDMCKLLI-KHQI 60
              PLH AA    L + ++L    + ++  ++K   TPL  A  EG+ D   LL+ K+  
Sbjct: 138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 197

Query: 61  DVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           + +  D  G+     A  +    + K  + 
Sbjct: 198 EYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 7  PLHYAAKKNKLDIAKILIESNRCSLE--NKMKKTPLHLAAQEGYVDMCKLLIKH 58
          PLH A  +N+    + L+ S    L   ++  + PLH +      ++   L+  
Sbjct: 3  PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 27  NRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAK 86
              +       T LHLA  + + ++ + LI++   V  +D     PLH AA    L + +
Sbjct: 96  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 155

Query: 87  ILIESNRCSL--ENKMKKTPLHLAAQEGHVDMCKLLI-KHQIDVNAQD 131
           +L    + ++  ++K   TPL  A  EGH D   LL+ K+  + +  D
Sbjct: 156 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 203

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 103 TPLHLAAQEGHVDMCK-LLIKHQIDVNAQDIE 133
            PLH A  E      + LL      +  +D +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD 33

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 2e-08
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVN 63
            +  L  AA + +++  + L+E+                    G   + +LL+ H  + N
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 64  AQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLENKMK--KTPLHLAAQEGHVDMCKLLI 121
             D    +   + A +       +++      L+ +    + P+ LA + GH D+ + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (73), Expect = 0.004
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQ 130
             L  AA  G V+  + L++   + NA 
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAP 32

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-08
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 34/154 (22%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESNRCSLENK----------------------------- 34
               L  AA +  +   + L+       +                               
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 35  -----MKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILI 89
                   +P+H AA+ G++D  K+L++H  DVN  D  G+ P+H A ++    +   L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 90  ESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
             +     +    TPL LA Q G  D+  +L  H
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 3e-08
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query: 4   GSSPLHY---AAKKNKLDIAKILIESN-------RCSLENKMKKTPLHLAAQ---EGYVD 50
            ++ LH    A K   +                   +  ++  +T LHLA +      + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 51  MCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA 109
           +   L+++  +++ Q   GS+ LHY    +  +  K+L+       + N+  +TPL +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 110 QEGHVDMCKLLIKHQ 124
           +  H    +LL +  
Sbjct: 123 RLKHEHCEELLTQAL 137

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 37  KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIE 90
           +T LHLA      D+  LL+K   DVN     G SP      +    I + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-06
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 35  MKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN- 92
              T LHLA+  GY+ + +LL+         +   G + LH A      D+  +L++   
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 93  RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA 134
             +       +P  L        + + L +  ++      E+
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 37 KTPLHLAAQEGYVDMCKLLIKHQI----DVNAQDIVGSSPLHYA 76
           + LHLA       +   +I+        +N Q+ +  +PLH A
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 4   GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQID 61
           G + LH A      D+  +L++     +       +P  L        + + L +  ++
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 6e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 102 KTPLHLAAQEGHVDMCKLLIKHQI----DVNAQD 131
            + LHLA       +   +I+        +N Q+
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN 36

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 7e-07
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 34/148 (22%)

Query: 7   PLHYAAKKNKLDIAKILIES---------------------------------NRCSLEN 33
            L  AA+  + D  +IL+ +                                        
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 34  KMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNR 93
           K+ +TPLH+AA EG+ ++ ++L+KH  DVNA+D++  + LH+A + N  ++ ++LI+   
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 94  C-SLENKMKKTPLHLAAQEGHVDMCKLL 120
               ++K  KT   ++   G+ D+ ++L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             L  AA+ G  D  ++L+ +        
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 8e-04
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQD 66
            L  AA+ G  D  ++L+ +        
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 9e-07
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 6   SPLHYAAKKNKLDIAKILIESNRC-SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA 64
           + L  ++ + + D+ + +I      SL N    T LH A   G+ ++ K L++  ++VNA
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 65  QDIVGSSPLHYAAKKNKLDIAKILIE--SNRCSLENKMKKTPLHL--AAQEGHVDMCKLL 120
            D  G +PLH AA  N + + K L+E  +   ++     +T        +EG+    + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 121 IKHQ 124
              Q
Sbjct: 123 YGVQ 126

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 3e-06
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 35/153 (22%)

Query: 6   SPLHYAAKKNKLDIAKILIESN---------------------------------RCSLE 32
           + L  AA +  L+    L+++N                                    L+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 33  NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN 92
           ++     +H AA+ G++D  + L++ Q DVN +D  G+ PLH AAK+  L + + L++  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 93  RC--SLENKMKKTPLHLAAQEGHVDMCKLLIKH 123
                  N    T   LA   G  ++  L+  +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-06
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
             L  AA  G ++    L+++ ++VNAQ+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQN 31

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 7e-06
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query: 38  TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESNRCSLE 97
             L  AA  G ++    L+++ ++VNAQ+  G + L      N     ++L+      L+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 98  NKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQD 131
           ++     +H AA+ G +D  + L++ Q DVN +D
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 96

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 2e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 7   PLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGY-VDMCKLLIKHQIDVNAQ 65
              +A K   LD  K  +                   A +   +++ + L+    D+NA 
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 66  DIVGSSPLHYAAKKNKLDIAKILIESNRCS-LENKMKKTPLHLAAQEGHVDM 116
           D    +PL  A  +  +   K+L+       ++     T L     +    +
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKAL 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.97
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-31  Score=159.39  Aligned_cols=134  Identities=26%  Similarity=0.409  Sum_probs=119.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc----------------------------------ccccccCCCChhhHHHhh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR----------------------------------CSLENKMKKTPLHLAAQE   46 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~----------------------------------~~~~~~~~~~~l~~a~~~   46 (134)
                      |+.|.||||.|+..|+.+++++++..+.                                  .+..+..|.||||+|+..
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK  113 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc
Confidence            6789999999999999888888877541                                  124567788999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCC
Q psy6445          47 GYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI  125 (134)
Q Consensus        47 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  125 (134)
                      |+.+++++|++.|.+++..+..+.||+|+|+..++.+++++|++.+ +++..+..|.|||++|+..++.+++++|++.|+
T Consensus       114 ~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga  193 (223)
T d1uoha_         114 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA  193 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999888 888899999999999999999999999999999


Q ss_pred             CCCcccccC
Q psy6445         126 DVNAQDIEA  134 (134)
Q Consensus       126 ~~~~~~~~g  134 (134)
                      +++.+|.+|
T Consensus       194 d~~~~d~~g  202 (223)
T d1uoha_         194 SIYIENKEE  202 (223)
T ss_dssp             CSCCCCTTS
T ss_pred             CCCCCCCCC
Confidence            999999876

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.5e-31  Score=159.39  Aligned_cols=134  Identities=25%  Similarity=0.346  Sum_probs=103.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc----ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC----------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR----CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD----------   66 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~----------   66 (134)
                      |++|.||||.|+++++.+++++|++.+.    .+.++..|.||||+|+..|+.+++++|++.|++++..+          
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            5788888888888888888888888772    24567788888888888888888888888876655333          


Q ss_pred             ----------------------------------------------------------------------CCCCcHHHHH
Q psy6445          67 ----------------------------------------------------------------------IVGSSPLHYA   76 (134)
Q Consensus        67 ----------------------------------------------------------------------~~~~t~l~~a   76 (134)
                                                                                            ..|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence                                                                                  3455667777


Q ss_pred             HHhCcHHHHHHHHhcC-CCC-CCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          77 AKKNKLDIAKILIESN-RCS-LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~-~~~-~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +..++.+++++|++.+ ... ..+..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g  225 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCC
Confidence            7777788888888777 333 345678888888888888888888888888888887765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=146.63  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=110.5

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHhC
Q psy6445           3 VGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGS-SPLHYAAKKN   80 (134)
Q Consensus         3 ~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~   80 (134)
                      -+.++||.|+++|+.+++++|+++| +++..+..|.+|+|+|+ .|+.+++++|++.|.+++..+..+. ||+|+|+..|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4678999999999999999999999 56888999999999775 7999999999999999999888765 6999999999


Q ss_pred             cHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh
Q psy6445          81 KLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK  122 (134)
Q Consensus        81 ~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  122 (134)
                      +.+++++|++.| +++..+..|.||+++|+..|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999 889999999999999999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-29  Score=153.84  Aligned_cols=95  Identities=26%  Similarity=0.341  Sum_probs=87.6

Q ss_pred             cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHH
Q psy6445          32 ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ-DIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAA  109 (134)
Q Consensus        32 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~  109 (134)
                      ++..|.||||+|+..++.+++++|++.+...+.. +..|.||||+|+..++.+++++|+++| +++.++..|.|||++|+
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            4566889999999999999999999998887754 567999999999999999999999999 88999999999999999


Q ss_pred             hhCCHHHHHHHHhcCCC
Q psy6445         110 QEGHVDMCKLLIKHQID  126 (134)
Q Consensus       110 ~~~~~~~~~~L~~~g~~  126 (134)
                      ..++.+++++|+++||+
T Consensus       234 ~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         234 LRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TSSCHHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHHHcCCC
Confidence            99999999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.1e-31  Score=143.44  Aligned_cols=106  Identities=22%  Similarity=0.291  Sum_probs=100.9

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      .|||++|++.|+.+++++|+++| +.+..+..|.||||+|+..|+.++++++++.|.+++.++..|.||||+|+..++.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999 56788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCCCCChhhHHHh
Q psy6445          84 IAKILIESN-RCSLENKMKKTPLHLAAQ  110 (134)
Q Consensus        84 ~~~~Ll~~~-~~~~~~~~~~t~l~~a~~  110 (134)
                      ++++|++.| +++..+..|.|||++|..
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            999999999 899999999999999854

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=139.08  Aligned_cols=120  Identities=28%  Similarity=0.327  Sum_probs=108.2

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLD   83 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~   83 (134)
                      .++|+.|+..|+.+++++|+++| +++.++..|.||||+|+..++.+++++|++.|.+++..|..|.||||+|+..++.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            47899999999999999999999 56888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCC-CCCCChhhHH--HhhCCHHHHHHHHhcC
Q psy6445          84 IAKILIESN-RCSLEN-KMKKTPLHLA--AQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        84 ~~~~Ll~~~-~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~g  124 (134)
                      ++++|+++| ++...+ ..+.||++++  ...|+.+++++|+..+
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999 666554 4578887765  6778999999998653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.7e-29  Score=148.38  Aligned_cols=121  Identities=35%  Similarity=0.553  Sum_probs=114.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |+.|.||||+|+..++.+++++|++.| +++..+..|.+|||+++..++.+++++|...+.+++..+..|.||||+|+..
T Consensus       100 d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~  179 (223)
T d1uoha_         100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE  179 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceecccccc
Confidence            578999999999999999999999998 5678889999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK  122 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  122 (134)
                      ++.+++++|++.| +++..|..|+|||++|. .|+.+++++|++
T Consensus       180 g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         180 ERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9999999999999 89999999999999985 688899999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-28  Score=138.43  Aligned_cols=130  Identities=28%  Similarity=0.414  Sum_probs=112.4

Q ss_pred             ccHHHHHHHhCCHHHHHHHHhhCcccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           5 SSPLHYAAKKNKLDIAKILIESNRCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         5 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      .|||+.|++.|+.++|++|+++|+....+..|.||||+|+..++.+++..+.............+.++++.++...+.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcccccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            48999999999999999999999766678999999999999999999999999877776667777788888888888888


Q ss_pred             HHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          85 AKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        85 ~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +++++..+ +....+..|.|||++|+..|+.+++++|++.|++++.+|.+|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g  133 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCC
Confidence            88888877 677778888888888888888888888888888888887765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-28  Score=143.73  Aligned_cols=133  Identities=23%  Similarity=0.377  Sum_probs=116.9

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHh----hC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCC-----------
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIE----SN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQ-----------   65 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~----~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-----------   65 (134)
                      ++|.||||.||++|+.++++.|++    .+ +.+.++..|.||||+|+..|+.+++++|++.|...+..           
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            479999999999999999999986    44 45778899999999999999999999999987665432           


Q ss_pred             ------------------------------------------------------------CCCCCcHHHHHHHhCcHHHH
Q psy6445          66 ------------------------------------------------------------DIVGSSPLHYAAKKNKLDIA   85 (134)
Q Consensus        66 ------------------------------------------------------------~~~~~t~l~~a~~~~~~~~~   85 (134)
                                                                                  ...+.++++.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                        12455778888899999999


Q ss_pred             HHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          86 KILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        86 ~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +++++.+ .....+..|.|||++|+..|+.+++++|+++|++++.+|.+|
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G  210 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN  210 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            9999998 777888999999999999999999999999999999998876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.7e-28  Score=151.69  Aligned_cols=131  Identities=26%  Similarity=0.376  Sum_probs=106.3

Q ss_pred             CccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC------------------
Q psy6445           4 GSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA------------------   64 (134)
Q Consensus         4 g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~------------------   64 (134)
                      +.|||+.||..|++++|++|++.| +++..+.+|.||||+|+..|+.+++++|++.+.+...                  
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccccc
Confidence            457777777777777777777777 4566777777777777777777777777776544221                  


Q ss_pred             ---------------------------------------------------------------------------CCCCC
Q psy6445          65 ---------------------------------------------------------------------------QDIVG   69 (134)
Q Consensus        65 ---------------------------------------------------------------------------~~~~~   69 (134)
                                                                                                 .+..+
T Consensus       120 ~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  199 (291)
T d1s70b_         120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG  199 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             chhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCC
Confidence                                                                                       12345


Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          70 SSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        70 ~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .||++.|+..++.+++++|++.| +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       200 ~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G  265 (291)
T d1s70b_         200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG  265 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            67888889999999999999999 888889999999999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-28  Score=138.65  Aligned_cols=126  Identities=29%  Similarity=0.415  Sum_probs=77.9

Q ss_pred             HHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           7 PLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         7 ~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      +|+.|+.+|+.++|+.|++.+  +++..+..|.||||+|+ .++.+++++|+.++.+++..+..+.+|++.++..++.++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            366666666666666666543  33555666666666654 355666666666666666666666666666666666666


Q ss_pred             HHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          85 AKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        85 ~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++++++.+ +.+..+..+.|||++|+..|+.+++++|+ .|++++.+|.+|
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G  133 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG  133 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTS
T ss_pred             cccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCC
Confidence            66666666 55555666666666666666666666555 456666655544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=143.12  Aligned_cols=134  Identities=26%  Similarity=0.377  Sum_probs=112.0

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-cc---ccc-----------------------------------cCCCChhh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CS---LEN-----------------------------------KMKKTPLH   41 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~---~~~-----------------------------------~~~~~~l~   41 (134)
                      |++|.||||+|+..|+.+++++|+++++ .+   ..+                                   ..+.++++
T Consensus        31 d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  110 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH  110 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6789999999999999999999999873 21   112                                   23456666


Q ss_pred             HHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHH
Q psy6445          42 LAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKL  119 (134)
Q Consensus        42 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~  119 (134)
                      .++..++.+++.+++..+...+..+..|.||+|+|+..++.+++++|++.+  ..+..+..|.||||+|+..++.+++++
T Consensus       111 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~  190 (229)
T d1ixva_         111 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL  190 (229)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHH
Confidence            666667777777777777777778888999999999999999999999887  567788999999999999999999999


Q ss_pred             HHh-cCCCCCcccccC
Q psy6445         120 LIK-HQIDVNAQDIEA  134 (134)
Q Consensus       120 L~~-~g~~~~~~~~~g  134 (134)
                      |++ .|++++.+|.+|
T Consensus       191 Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         191 LVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             HHHHHCCCSCCCCTTS
T ss_pred             HHHhcCCCCCCcCCCC
Confidence            996 599999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.6e-28  Score=150.58  Aligned_cols=133  Identities=27%  Similarity=0.338  Sum_probs=106.6

Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHh--------hC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy6445           2 QVGSSPLHYAAKKNKLDIAKILIE--------SN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSP   72 (134)
Q Consensus         2 ~~g~~~l~~a~~~~~~~~~~~ll~--------~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~   72 (134)
                      +.|.||||+|+..|+.++++.|+.        .| +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            468899999999998888877754        44 456778889999999999999999999999888887766666666


Q ss_pred             HHHHH---------------------------------------------------------------------------
Q psy6445          73 LHYAA---------------------------------------------------------------------------   77 (134)
Q Consensus        73 l~~a~---------------------------------------------------------------------------   77 (134)
                      +++|+                                                                           
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            65555                                                                           


Q ss_pred             -----HhCcHHHHHHHH-hcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          78 -----KKNKLDIAKILI-ESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        78 -----~~~~~~~~~~Ll-~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                           ..++.+++++++ ..+ +....+..|.|||++|+..|+.+++++|+++|++++.+|.+|
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  254 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCC
Confidence                 445556666544 344 666678889999999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-28  Score=143.90  Aligned_cols=134  Identities=28%  Similarity=0.382  Sum_probs=108.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC------CCCCCCcHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA------QDIVGSSPL   73 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~------~~~~~~t~l   73 (134)
                      |.+|.||||+|+..|+.+++++|++.| +.+..+..|.+|++.++..++.++++.++..+.....      ....+.||+
T Consensus        36 d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l  115 (221)
T d1iknd_          36 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL  115 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHH
T ss_pred             CCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhh
Confidence            567899999999999999999999888 4577788888899998888888888888887544322      233467888


Q ss_pred             HHHHHhCcHHHHHHHHhcC-CCC-CCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          74 HYAAKKNKLDIAKILIESN-RCS-LENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        74 ~~a~~~~~~~~~~~Ll~~~-~~~-~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +.|+..++.+++++++..+ ... ..+..|.||||+|+..|+.+++++|+++|+|++.+|.+|
T Consensus       116 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G  178 (221)
T d1iknd_         116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  178 (221)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             hHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCC
Confidence            8888888888888888877 443 344568999999999999999999999999999888776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-27  Score=146.49  Aligned_cols=132  Identities=27%  Similarity=0.363  Sum_probs=116.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC--cccccccCCCChhhHHHh----hCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN--RCSLENKMKKTPLHLAAQ----EGYVDMCKLLIKHQIDVNAQDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~~~~~~~~~~~t~l~   74 (134)
                      ++.|.||||.|+++|+.+++++|+++.  +.+..+..+.+++..+..    .+..+++++|++.|++++.++..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~  224 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccc
Confidence            357899999999999999999999875  456777788887665543    33357999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhc-C-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccc
Q psy6445          75 YAAKKNKLDIAKILIES-N-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDI  132 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~-~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  132 (134)
                      +|+..++.+++++|++. + +++..+..|.||||+|+..++.+++++|+++||+++.+|.
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             hhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999999975 6 8888999999999999999999999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-27  Score=135.91  Aligned_cols=128  Identities=27%  Similarity=0.435  Sum_probs=99.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q psy6445           6 SPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDI   84 (134)
Q Consensus         6 ~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   84 (134)
                      +|||.|+.+|+.++|++|+++| +++.++..|.||||+|+ .++.+++++|++.+.+++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7899999999999999999988 55778888999999875 688999999999988888777777777777777777777


Q ss_pred             HHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCC-CCCcccccC
Q psy6445          85 AKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQI-DVNAQDIEA  134 (134)
Q Consensus        85 ~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~-~~~~~~~~g  134 (134)
                      ++.+++.+ .....+..+.+|+++|+..++.+++++|+++++ +++.+|.+|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  133 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  133 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            77777666 566666667777777777777777777776664 566666544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.1e-27  Score=141.82  Aligned_cols=120  Identities=28%  Similarity=0.444  Sum_probs=70.9

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccc------------------------------------------------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSL------------------------------------------------   31 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~------------------------------------------------   31 (134)
                      |++|.||||+||+.|+.+++++|++.+. .+.                                                
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4679999999999999999999999873 222                                                


Q ss_pred             -------------------cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q psy6445          32 -------------------ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN   92 (134)
Q Consensus        32 -------------------~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~   92 (134)
                                         .+..|.||++.++..+..+++..++..+.+++..+..|.||||+|+..|+.+++++|+++|
T Consensus       100 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCC
Confidence                               2233444555555555555555555555555555555555555555555555555555554


Q ss_pred             -CCCCCCCCCCChhhHHHhhCCHHHHHHH
Q psy6445          93 -RCSLENKMKKTPLHLAAQEGHVDMCKLL  120 (134)
Q Consensus        93 -~~~~~~~~~~t~l~~a~~~~~~~~~~~L  120 (134)
                       +++..+..|.|||++|++.|+.+++++|
T Consensus       180 ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         180 ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence             4444455555555555555555555443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.2e-27  Score=133.27  Aligned_cols=122  Identities=20%  Similarity=0.259  Sum_probs=108.4

Q ss_pred             cHHHHHHHhCCHHHHHHHHhhCc-cc------ccccCCCChhhHHHhh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy6445           6 SPLHYAAKKNKLDIAKILIESNR-CS------LENKMKKTPLHLAAQE---GYVDMCKLLIKHQIDVNAQDIVGSSPLHY   75 (134)
Q Consensus         6 ~~l~~a~~~~~~~~~~~ll~~~~-~~------~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~~   75 (134)
                      ..|+.|++.+++..+..++..|. ..      ..+..|.||||+|+..   +..+++++|++.|.+++.++..|.||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            45678889999999999988872 22      2356789999999975   66899999999999999999999999999


Q ss_pred             HHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCC
Q psy6445          76 AAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDV  127 (134)
Q Consensus        76 a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  127 (134)
                      |+..++.+++++|+++| +.+.++..|.|||++|+..++.+++++|++.+...
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999 88999999999999999999999999999876543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-27  Score=133.92  Aligned_cols=123  Identities=26%  Similarity=0.387  Sum_probs=115.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+ .++.+++++|++++ +....+..+.++++.++..+..+.+.+++..+.+++..+..+.+|+++|+..
T Consensus        31 d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  109 (156)
T d1ihba_          31 NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE  109 (156)
T ss_dssp             CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999886 79999999999998 5577888999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC--CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcC
Q psy6445          80 NKLDIAKILIESN--RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQ  124 (134)
Q Consensus        80 ~~~~~~~~Ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  124 (134)
                      ++.+++++|++++  +...++..|.||||+|++.++.+++++|+++|
T Consensus       110 ~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         110 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999887  67788999999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=6.5e-28  Score=131.31  Aligned_cols=98  Identities=31%  Similarity=0.388  Sum_probs=94.6

Q ss_pred             CChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHH
Q psy6445          37 KTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVD  115 (134)
Q Consensus        37 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~  115 (134)
                      .|||++|+..|+.+++++|++.|.+++.++..|.||+|+|+..++.+++++|++.| +++..+..|.||||+|+..++.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999 88899999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccC
Q psy6445         116 MCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       116 ~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++++|+++|++++.+|.+|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G  101 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDG  101 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSST
T ss_pred             hhhhhhcccccceeeCCCC
Confidence            9999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-27  Score=132.39  Aligned_cols=122  Identities=27%  Similarity=0.432  Sum_probs=112.7

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||.|+ .++.+++++|++.+ +.+..+..|.+|++.++..++.++++++++.+.+++.++..|.||+|+|+..
T Consensus        33 d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~  111 (156)
T d1bd8a_          33 NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             CCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccc
Confidence            578999999987 58899999999988 5577788899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCCCCCCChhhHHHhhCCHHHHHHHHhc
Q psy6445          80 NKLDIAKILIESNRCSLENKMKKTPLHLAAQEGHVDMCKLLIKH  123 (134)
Q Consensus        80 ~~~~~~~~Ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  123 (134)
                      ++.+++++|+...++..++..|.|||++|+..|+.+++++|+++
T Consensus       112 ~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         112 GHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999885448888999999999999999999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-27  Score=146.95  Aligned_cols=131  Identities=17%  Similarity=0.224  Sum_probs=104.3

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCH-------HHHHHHHhcCCCCCCCCCCCCcH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYV-------DMCKLLIKHQIDVNAQDIVGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~-------~~~~~l~~~~~~~~~~~~~~~t~   72 (134)
                      |+.|.||||+|+..|+.++|++|++.| +.+.++..|.||||.|+..++.       ++++++.   ......+..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            678999999999999999999999999 5588899999999999987652       3444433   3345667889999


Q ss_pred             HHHHHHhCc----HH--------HHHHHHhcC-C-------------------------------------CCCCCCCCC
Q psy6445          73 LHYAAKKNK----LD--------IAKILIESN-R-------------------------------------CSLENKMKK  102 (134)
Q Consensus        73 l~~a~~~~~----~~--------~~~~Ll~~~-~-------------------------------------~~~~~~~~~  102 (134)
                      +|+++..+.    ..        ++.++++.+ .                                     ++.+|..|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            998886443    22        233343332 1                                     456788999


Q ss_pred             ChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         103 TPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       103 t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ||||+|++.|+.+++++|+++|++++.+|..|
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G  292 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKSG  292 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999999999999999999999887

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-26  Score=129.24  Aligned_cols=120  Identities=31%  Similarity=0.586  Sum_probs=111.8

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||||+|+..++.++++.++.... .......+.++++.++...+.+.++++...+.+.+.++..|.||||+|+..
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~  110 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhc
Confidence            5789999999999999999999998773 455667778899999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHH
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLL  120 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L  120 (134)
                      ++.+++++|++.| +++..+..|.|||++|+..|+.+++++|
T Consensus       111 g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999 8899999999999999999999999976

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.5e-26  Score=144.57  Aligned_cols=121  Identities=32%  Similarity=0.540  Sum_probs=94.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      |..|.||++.|++.++.+++++|++.| +.+..+..+.+||+.++..+..++++++++.|.+++.++..|.||||.|++.
T Consensus       261 ~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHc
Confidence            346777888888888888888888777 4456666777888888888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHH
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLI  121 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  121 (134)
                      |+.+++++|+++| +++.++..|.|||++|++.|+.+++++|.
T Consensus       341 g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         341 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            8888888888888 77777888888888888888887777654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.3e-26  Score=144.84  Aligned_cols=134  Identities=35%  Similarity=0.571  Sum_probs=126.6

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKK   79 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~   79 (134)
                      +..|.|||+.|+..++.+++++++..+ ..+..+..|.+|++.++..++.+++++|++.|.+++..+..+.||++.++..
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY  307 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhccc
Confidence            457899999999999999999999988 4467788999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445          80 NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus        80 ~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      ++.++++++++.| +++.++..|.||||+|+..|+.+++++|+++|++++.+|.+|
T Consensus       308 ~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         308 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             SCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             CcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            9999999999999 888999999999999999999999999999999999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.3e-25  Score=136.44  Aligned_cols=122  Identities=20%  Similarity=0.323  Sum_probs=101.4

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-ccccc----------------------------------------------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLEN----------------------------------------------   33 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~----------------------------------------------   33 (134)
                      |++|.||||+|+..|+.+++++|+++|. ++.++                                              
T Consensus        71 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          71 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            5789999999999999999999999873 33222                                              


Q ss_pred             ----------------------------------cCCCChhhHHHhhCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHH
Q psy6445          34 ----------------------------------KMKKTPLHLAAQEGYVDMCKLLI-KHQIDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus        34 ----------------------------------~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~t~l~~a~~   78 (134)
                                                        ..|.++||+++..++.+++.+++ ..+.+.+.++..|.||||+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~  230 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  230 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence                                              33556666666666666666544 3466666778899999999999


Q ss_pred             hCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHh
Q psy6445          79 KNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIK  122 (134)
Q Consensus        79 ~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  122 (134)
                      .++.+++++|++.| +++.+|..|.|||++|++.|+.+++++|++
T Consensus       231 ~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         231 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999 899999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-26  Score=125.44  Aligned_cols=95  Identities=26%  Similarity=0.311  Sum_probs=90.6

Q ss_pred             ChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHH
Q psy6445          38 TPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDM  116 (134)
Q Consensus        38 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~  116 (134)
                      ++|+.|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++.+ +.+..+..|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            4689999999999999999999999999999999999999999999999999999 888999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccc
Q psy6445         117 CKLLIKHQIDVNAQDI  132 (134)
Q Consensus       117 ~~~L~~~g~~~~~~~~  132 (134)
                      +++|+++|++++..+.
T Consensus        83 v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTY   98 (130)
T ss_dssp             HHHHHHTTCCTTCCCS
T ss_pred             HHHHHHcCCCcccccC
Confidence            9999999999987664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-25  Score=132.01  Aligned_cols=123  Identities=27%  Similarity=0.375  Sum_probs=112.5

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQ-IDVNAQDIVGSSPLHYAAK   78 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~   78 (134)
                      +..+.+|++.++..++.+++++|+..+ .....+..|.||||+|+..|+.+++++|++.+ .+++.++..|.||||+|+.
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc
Confidence            356789999999999999999999998 45678899999999999999999999999986 6778899999999999999


Q ss_pred             hCcHHHHHHHHh-cC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          79 KNKLDIAKILIE-SN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        79 ~~~~~~~~~Ll~-~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      .++.+++++|++ .| +++.++..|.|||++|+.   .+++++|+++|+|
T Consensus       182 ~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999999996 58 899999999999999984   5899999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4e-29  Score=158.13  Aligned_cols=129  Identities=14%  Similarity=0.072  Sum_probs=107.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHH---HHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC--CCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKI---LIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD--IVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~---ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--~~~~t~l~   74 (134)
                      |..|.|||++|+++|+.+++++   |++.+ ..+..+..|.||||+|+..|+.++|++|++.|.+++..+  ..|.||||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            4578999999999999988776   56777 457788999999999999999999999999999988765  45889999


Q ss_pred             HHHHhCcHHHHHHHHhcC-CC---CCCCCCCCChhhHHHhhCCHHHHHHHHhcCCCCCc
Q psy6445          75 YAAKKNKLDIAKILIESN-RC---SLENKMKKTPLHLAAQEGHVDMCKLLIKHQIDVNA  129 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~~-~~---~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  129 (134)
                      +|+..|+.+++++|++.+ ..   +..+..+.||++.|+..|+.+++++|++.|++++.
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            999999999999999988 32   22344567888889999999999999999876654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-24  Score=126.99  Aligned_cols=126  Identities=25%  Similarity=0.351  Sum_probs=113.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcc-------cccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCC-CCCCcH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRC-------SLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQD-IVGSSP   72 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~   72 (134)
                      |..|.+||+.|+..++.++++.++..+..       ......|.+|++.|+..++.+++.+++..+...+..+ ..|.||
T Consensus        69 d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~  148 (221)
T d1iknd_          69 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  148 (221)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             ccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCc
Confidence            57899999999999999999999987621       2344568899999999999999999999998887765 569999


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhhCCHHHHHHHHhcCCC
Q psy6445          73 LHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGHVDMCKLLIKHQID  126 (134)
Q Consensus        73 l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  126 (134)
                      +|+|+..|+.+++++|+++| +++.++..|.|||++|+..++.+++++|.+.+.+
T Consensus       149 L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         149 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999999999 9999999999999999999999999999987654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.7e-24  Score=121.64  Aligned_cols=92  Identities=18%  Similarity=0.333  Sum_probs=85.8

Q ss_pred             CCCCccHHHHHHHh---CCHHHHHHHHhhC-cccccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy6445           1 RQVGSSPLHYAAKK---NKLDIAKILIESN-RCSLENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYA   76 (134)
Q Consensus         1 ~~~g~~~l~~a~~~---~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a   76 (134)
                      +..|.||||+|++.   +..+++++|+++| +.+.++..|.||||+|+..|+.+++++|++.|++++.++..|.||+|+|
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  121 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHH
Confidence            35789999999985   6789999999999 5688999999999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhcC
Q psy6445          77 AKKNKLDIAKILIESN   92 (134)
Q Consensus        77 ~~~~~~~~~~~Ll~~~   92 (134)
                      +..++.+++++|++.+
T Consensus       122 ~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         122 KRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhC
Confidence            9999999999999866

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2e-24  Score=133.20  Aligned_cols=87  Identities=37%  Similarity=0.494  Sum_probs=79.0

Q ss_pred             ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhhHHHhh
Q psy6445          33 NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLHLAAQE  111 (134)
Q Consensus        33 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a~~~  111 (134)
                      +..|.||||.|+..|+.+++++|+..|.+++.++..|.||||+|+..|+.+++++|+++| +++.+|..|.|||++|+. 
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-  274 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-  274 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-
Confidence            456789999999999999999999999999999999999999999999999999999999 889999999999999975 


Q ss_pred             CCHHHHHHHHhc
Q psy6445         112 GHVDMCKLLIKH  123 (134)
Q Consensus       112 ~~~~~~~~L~~~  123 (134)
                         +++++|.+.
T Consensus       275 ---~~~~~L~~~  283 (291)
T d1s70b_         275 ---DILGYLEEL  283 (291)
T ss_dssp             ---GGGHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               566666644

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=7.7e-24  Score=125.04  Aligned_cols=118  Identities=28%  Similarity=0.374  Sum_probs=105.0

Q ss_pred             HHHHHHHHhhC-cccc-cccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC------------------------------
Q psy6445          17 LDIAKILIESN-RCSL-ENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA------------------------------   64 (134)
Q Consensus        17 ~~~~~~ll~~~-~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~------------------------------   64 (134)
                      .++|++|+++| +.+. .|.+|.||||+|+..|+.+++++|++.|..++.                              
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            57999999999 4444 589999999999999999999999998766542                              


Q ss_pred             -------------------------------------CCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChhh
Q psy6445          65 -------------------------------------QDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPLH  106 (134)
Q Consensus        65 -------------------------------------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~  106 (134)
                                                           .+..|.||+++++..+..++++.+++.+ +.+..+..|.|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence                                                 2455678999999999999999999998 88889999999999


Q ss_pred             HHHhhCCHHHHHHHHhcCCCCCcccccC
Q psy6445         107 LAAQEGHVDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       107 ~a~~~~~~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      +|+..|+.+++++|+++|++++.+|..|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g  189 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMD  189 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999999999998776

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=117.32  Aligned_cols=98  Identities=21%  Similarity=0.290  Sum_probs=90.4

Q ss_pred             CCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCC-ChhhHHHhhCC
Q psy6445          36 KKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKK-TPLHLAAQEGH  113 (134)
Q Consensus        36 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~-t~l~~a~~~~~  113 (134)
                      +.++||+|+..|+.+++++|++.|.+++.++..|.||+|+|+ .++.+++++|++.| +++..+..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999999775 79999999999999 7777777765 69999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccC
Q psy6445         114 VDMCKLLIKHQIDVNAQDIEA  134 (134)
Q Consensus       114 ~~~~~~L~~~g~~~~~~~~~g  134 (134)
                      .+++++|+++|++++.+|.+|
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G  102 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWG  102 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTC
T ss_pred             ccccccccccccccccccCCC
Confidence            999999999999999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-24  Score=125.49  Aligned_cols=118  Identities=29%  Similarity=0.454  Sum_probs=106.1

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCcc-c-------------------------------------------------
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNRC-S-------------------------------------------------   30 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~-------------------------------------------------   30 (134)
                      |..|.||||.|+..|+.+++++|++++.. +                                                 
T Consensus        37 d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (228)
T d1k1aa_          37 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  116 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             CCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccccccccccc
Confidence            57899999999999999999999987632 1                                                 


Q ss_pred             ----------------------ccccCCCChhhHHHhhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHH
Q psy6445          31 ----------------------LENKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNAQDIVGSSPLHYAAKKNKLDIAKIL   88 (134)
Q Consensus        31 ----------------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   88 (134)
                                            .....+.++++.|+..+...+++.++..+...+.++..|.||+++|+..++.+++++|
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L  196 (228)
T d1k1aa_         117 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL  196 (228)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             ccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHH
Confidence                                  1233578999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CCCCCCCCCCChhhHHHhhCCHHHHH
Q psy6445          89 IESN-RCSLENKMKKTPLHLAAQEGHVDMCK  118 (134)
Q Consensus        89 l~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~  118 (134)
                      +++| +++.++..|.|||++|+..++.++++
T Consensus       197 l~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         197 VRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999 89999999999999999999888764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-21  Score=120.23  Aligned_cols=100  Identities=29%  Similarity=0.426  Sum_probs=75.6

Q ss_pred             CCCChhhHHHhhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHH----hCcHHHHHHHHhcC-CCCCCCCCCCChhhHH
Q psy6445          35 MKKTPLHLAAQEGYVDMCKLLIKH-QIDVNAQDIVGSSPLHYAAK----KNKLDIAKILIESN-RCSLENKMKKTPLHLA  108 (134)
Q Consensus        35 ~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~~-~~~~~~~~~~t~l~~a  108 (134)
                      .|.||||+|+..|+.+++++|++. |.+++..+..+.++...+..    ....+++++|+++| +++..+..|.|||++|
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            366677777777777777777754 66666666666666555433    22345777777777 7777788999999999


Q ss_pred             HhhCCHHHHHHHHh-cCCCCCcccccC
Q psy6445         109 AQEGHVDMCKLLIK-HQIDVNAQDIEA  134 (134)
Q Consensus       109 ~~~~~~~~~~~L~~-~g~~~~~~~~~g  134 (134)
                      +..++.+++++|++ .|++++.+|.+|
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G  253 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCC
Confidence            99999999999997 599999998876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=5.6e-24  Score=134.42  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=72.2

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHhhCc-cccc--ccCCCChhhHHHhhCCHHHHHHHHhcCCCCCC---CCCCCCcHHH
Q psy6445           1 RQVGSSPLHYAAKKNKLDIAKILIESNR-CSLE--NKMKKTPLHLAAQEGYVDMCKLLIKHQIDVNA---QDIVGSSPLH   74 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~--~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~~~~~t~l~   74 (134)
                      |+.|.||||+|++.|+.++|++|++.|+ .+..  +..|.||||+|+..|+.+++++|++.|.....   .+..+.||++
T Consensus       123 ~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~  202 (346)
T d2ajaa1         123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW  202 (346)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhh
Confidence            4568899999999999999999999984 3333  34688999999999999999999998865432   2334567777


Q ss_pred             HHHHhCcHHHHHHHHhc
Q psy6445          75 YAAKKNKLDIAKILIES   91 (134)
Q Consensus        75 ~a~~~~~~~~~~~Ll~~   91 (134)
                      .|+..|+.+++++|++.
T Consensus       203 ~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         203 AAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             HHSTTCCHHHHHHHTTS
T ss_pred             HHhhcCHHHHHHHHHhC
Confidence            78888888888888754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=9.9e-20  Score=112.87  Aligned_cols=109  Identities=26%  Similarity=0.274  Sum_probs=80.8

Q ss_pred             CCCCccHHHHHHHhCCH---HHHHHHHhhC--cccccccCCCChhhHHHhhCC----HH--------HHHHHHhcCCC--
Q psy6445           1 RQVGSSPLHYAAKKNKL---DIAKILIESN--RCSLENKMKKTPLHLAAQEGY----VD--------MCKLLIKHQID--   61 (134)
Q Consensus         1 ~~~g~~~l~~a~~~~~~---~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~----~~--------~~~~l~~~~~~--   61 (134)
                      |+.|.||||.||..++.   ..+..+++..  .....+..|++|||.++..+.    ..        ++.++...+..  
T Consensus       137 d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (301)
T d1sw6a_         137 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI  216 (301)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcch
Confidence            57899999999987642   2222333322  234567889999998876444    22        23333333221  


Q ss_pred             -----------------------------------CCCCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCChh
Q psy6445          62 -----------------------------------VNAQDIVGSSPLHYAAKKNKLDIAKILIESN-RCSLENKMKKTPL  105 (134)
Q Consensus        62 -----------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~t~l  105 (134)
                                                         ++.+|..|.||||+|++.++.+++++|++.| +++.+|..|.|||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl  296 (301)
T d1sw6a_         217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  296 (301)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             hcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence                                               5677889999999999999999999999999 9999999999999


Q ss_pred             hHHH
Q psy6445         106 HLAA  109 (134)
Q Consensus       106 ~~a~  109 (134)
                      ++|+
T Consensus       297 ~~A~  300 (301)
T d1sw6a_         297 DFGA  300 (301)
T ss_dssp             GGTC
T ss_pred             HHcC
Confidence            9986