Psyllid ID: psy6446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEccccEEEEEEccc
Coil and Loop (DISEMBL)
mgtvwdavsgeelhsfqhphivkssvhfatdsyrlatgsndkniriydlnkpdaeptvyrghssgikhVQFFKnntrliscaedktvrlwdvsasaevqklefgavpnsleisrdgttitvTHGSCVTFLDANS
Flexible Loop (DISEMBL)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLatgsndkniriyDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASaevqklefgavpnsleisrdgttitvTHGScvtfldans
Low Complexity Region (SEG)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Disordered region (IsUnstruct)
************LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFL****
Disordered Region (DISOPRED)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Disordered Region (DISEMBL)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Disordered Region (DISPRO)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q5ZL33	350	Serine-threonine kinase r	yes	N/A	0.962	0.368	0.473	3e-26
Q9Z1Z2	350	Serine-threonine kinase r	yes	N/A	0.962	0.368	0.473	4e-26
Q9Y3F4	350	Serine-threonine kinase r	yes	N/A	0.962	0.368	0.473	5e-26
Q5XIG8	350	Serine-threonine kinase r	yes	N/A	0.962	0.368	0.473	5e-26
Q5E959	350	Serine-threonine kinase r	yes	N/A	0.962	0.368	0.473	5e-26
Q54LT8	293	Serine-threonine kinase r	yes	N/A	0.962	0.440	0.318	2e-13
Q9EPV5	1249	Apoptotic protease-activa	no	N/A	0.970	0.104	0.285	8e-12
O88879	1249	Apoptotic protease-activa	no	N/A	0.694	0.074	0.343	1e-11
P49695	742	Probable serine/threonine	yes	N/A	0.656	0.118	0.384	2e-11
Q8YRI1	1526	Uncharacterized WD repeat	yes	N/A	0.664	0.058	0.366	3e-11

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 2/131 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAVSG+EL +  H HIVKS V F  DS  L TG  DK +RIYDL+KP+AEP V  GH+
Sbjct: 85  VWDAVSGDELITLAHKHIVKS-VDFTQDSNYLLTGGQDKLLRIYDLSKPEAEPDVVSGHT 143

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGIK   +  ++ +++S A+DKTVRLWD S   EV+ L      +S+E   +G  + +T+
Sbjct: 144 SGIKKALWSSDDKQILS-ADDKTVRLWDRSTMTEVKALNVAMSVSSMEYVPEGQILVITY 202

Query: 124 GSCVTFLDANS 134
           G  + F  A +
Sbjct: 203 GKTIAFHSAET 213

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.
Gallus gallus (taxid: 9031)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 2/131 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct: 85  VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGIK   +  ++ +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct: 144 SGIKKALWCSDDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query: 124 GSCVTFLDANS 134
           G  + F  A S
Sbjct: 203 GRSIAFHSAVS 213

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 2/131 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct: 85  VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct: 144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query: 124 GSCVTFLDANS 134
           G  + F  A S
Sbjct: 203 GRSIAFHSAVS 213

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 2/131 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct: 85  VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct: 144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query: 124 GSCVTFLDANS 134
           G  + F  A S
Sbjct: 203 GRSIAFHSAVS 213

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 2/131 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct: 85  VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct: 144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query: 124 GSCVTFLDANS 134
           G  + F  A S
Sbjct: 203 GRSIAFHSAVS 213

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Bos taurus (taxid: 9913)

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 77/132 (58%), Gaps = 3/132 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD ++G E+ S +H  IVK++  F+ ++ R+ TG ++K +RI+DL +P+       GH+
Sbjct: 82  LWDTLNGSEILSIEHQSIVKTA-DFSNNNSRVVTGGSEKILRIFDLERPNDPLLQISGHT 140

Query: 64  SGIKHVQF-FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
           + IK   +   N+  ++S   D+ +R+WD+ +  +V      ++  S+E S+D   +  T
Sbjct: 141 NTIKTATWSVHNDDIVLSGGLDEVIRIWDLRSGTQVSLCAKSSI-TSMEFSKDRRFLVTT 199

Query: 123 HGSCVTFLDANS 134
            G+ VTF DA S
Sbjct: 200 AGNEVTFWDAQS 211

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9EPV5|APAF_RAT Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 17/147 (11%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
           +WD+ +G+ +H+++      +  HF   S    LATGSND  ++++DLN+ +   T++ G
Sbjct: 683 IWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMF-G 741

Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-------PNSLEI-- 112
           H++ + H +F  ++  L SC+ D T++LWDV ++ E + +            P  +E+  
Sbjct: 742 HTNSVTHCRFSPDDELLASCSADGTLKLWDVRSANEKKSINVKRFFLSSEDPPEDVEVIV 801

Query: 113 -----SRDGTTITVTHGSCVTFLDANS 134
                S DG  I V   + V  LD ++
Sbjct: 802 KCCSWSADGDRIIVAAKNKVLLLDIHT 828

Regulates progammed cell death; necessary for normal brain development. Participates with caspase-9 (Apaf-3) in the cytochrome c-dependent activation of caspase-3, leading to apoptosis. This activation requires ATP.

Rattus norvegicus (taxid: 10116)

>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
           +WD+ +G+ +H++       +  HF   S    LATGSND  ++++DLN+ +   T++ G
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-G 741

Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE 97
           H++ + H +F  ++  L SC+ D T+RLWDV ++ E
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase 9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.

Mus musculus (taxid: 10090)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           +WD  SGE LH+F+ H   V+ +V F+ D   LA+GS+D+ IR++D+     E T   GH
Sbjct: 652 LWDVASGEALHTFEGHTDWVR-AVAFSPDGALLASGSDDRTIRLWDVAA-QEEHTTLEGH 709

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
           +  +  V F    T L S +ED T+R+W ++
Sbjct: 710 TEPVHSVAFHPEGTTLASASEDGTIRIWPIA 740

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
           W+A +G+EL + +  +   +SV F+ D   LA+GS+D+ +R++D++      T ++GH+S
Sbjct: 891 WEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT-FKGHTS 949

Query: 65  GIKHVQFFKNNTRLISCAEDKTVRLWDVSA 94
            ++ V F  N+  L S + D+TVRLWD+S+
Sbjct: 950 RVRSVVFSPNSLMLASGSSDQTVRLWDISS 979

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
91089487	327	PREDICTED: similar to serine-threonine k	0.985	0.403	0.654	7e-45
48122105	330	PREDICTED: serine-threonine kinase recep	0.955	0.387	0.620	3e-42
383860171	330	PREDICTED: serine-threonine kinase recep	0.955	0.387	0.596	4e-42
350407099	330	PREDICTED: serine-threonine kinase recep	0.955	0.387	0.612	2e-41
340729402	330	PREDICTED: serine-threonine kinase recep	0.955	0.387	0.604	5e-41
322798692	328	hypothetical protein SINV_00798 [Solenop	0.955	0.390	0.596	6e-41
332026419	330	Serine-threonine kinase receptor-associa	0.955	0.387	0.596	6e-41
156549522	329	PREDICTED: serine-threonine kinase recep	0.955	0.389	0.612	3e-40
307171562	329	Serine-threonine kinase receptor-associa	0.955	0.389	0.589	3e-40
307195163	330	Serine-threonine kinase receptor-associa	0.955	0.387	0.573	2e-39

>gi|91089487|ref|XP_969569.1| PREDICTED: similar to serine-threonine kinase receptor-associated protein [Tribolium castaneum] gi|270012578|gb|EFA09026.1| hypothetical protein TcasGA2_TC006736 [Tribolium castaneum]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 2   GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
           G VWDA SGEELHSFQH HIVKS V+F+ DS  LATGSN+K +RI+DLNKP+A+P  + G
Sbjct: 84  GKVWDANSGEELHSFQHKHIVKS-VNFSKDSALLATGSNEKIVRIFDLNKPEAKPEEFTG 142

Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
           H+SGI+HV FF+N+T L+SCA+DKT+R+WD S+  EVQK++F ++PNSLE+SRDGT +TV
Sbjct: 143 HTSGIRHVIFFRNDTHLVSCADDKTLRVWDRSSGKEVQKMDFPSIPNSLEVSRDGTVLTV 202

Query: 122 THGSCVTFLDANS 134
           TH + VTFLD+ S
Sbjct: 203 THSNHVTFLDSES 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48122105|ref|XP_396504.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Apis mellifera] gi|380014107|ref|XP_003691084.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Apis florea]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 104/129 (80%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+TDS  L TGSN+K +RIYDLNKPDA P V+ GH 
Sbjct: 86  VWDAIKGEEIHSFQHKHIVKS-VNFSTDSNYLCTGSNEKLVRIYDLNKPDAAPQVFSGHK 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           +GI+HV FF NNT LI+C +DKT+R+WD ++  EV++L+F A+PNS+E+SRDG  IT TH
Sbjct: 145 NGIRHVTFFNNNTALITCGDDKTLRVWDRNSGQEVKRLDFPAIPNSMEVSRDGNIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860171|ref|XP_003705564.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Megachile rotundata]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WDA+ GEE+HSFQH HIVKS V+F++DS  L TGSN+K +RIYDLNKP+A P ++ GH 
Sbjct: 86  IWDAIKGEEIHSFQHKHIVKS-VNFSSDSNYLCTGSNEKLVRIYDLNKPEAAPQIFSGHK 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           +GI+HV FF NNT LI+CA+DKT+R+WD+++  EV++L F A+PNS+E+S+DG  IT TH
Sbjct: 145 NGIRHVTFFNNNTALITCADDKTLRVWDINSGQEVKRLNFPAIPNSMELSKDGNIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF D+
Sbjct: 205 SNIVTFWDS 213

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407099|ref|XP_003487985.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus impatiens]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+ DS  L TGSN+K +RIYDLNKPDA P V+ GH 
Sbjct: 86  VWDAIKGEEIHSFQHKHIVKS-VNFSIDSNYLCTGSNEKLVRIYDLNKPDAAPQVFSGHK 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+HV FF N+T LI+C +DKT+R+WD  +  EV++L+F A+PNS+E+SRDG  IT TH
Sbjct: 145 SGIRHVTFFNNDTALITCGDDKTLRVWDRKSGQEVRRLDFPAIPNSMEVSRDGNIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729402|ref|XP_003402993.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus terrestris]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+ DS  L TGSN+K +RIYDLNKPDA P V+ GH 
Sbjct: 86  VWDAIKGEEIHSFQHKHIVKS-VNFSIDSNYLCTGSNEKLVRIYDLNKPDATPQVFSGHK 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           +GI+HV FF N+T LI+C +DKT+R+WD  +  EV++L+F A+PNS+E+SRDG  IT TH
Sbjct: 145 NGIRHVTFFNNDTALITCGDDKTLRVWDRKSGQEVRRLDFPAIPNSMEVSRDGNIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798692|gb|EFZ20290.1| hypothetical protein SINV_00798 [Solenopsis invicta]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 106/129 (82%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA++GEE+HSFQH HIVKS V+F+TDS  L TGSN+K +RIYDLNKP+A P ++ GH+
Sbjct: 86  VWDAITGEEVHSFQHNHIVKS-VNFSTDSNHLCTGSNEKLVRIYDLNKPEATPQIFSGHT 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+HV FF NN+ LI+CA+DKT+R+WD ++  EV++L+F A+P+S+E+S+DG  I  TH
Sbjct: 145 SGIRHVTFFDNNSALITCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGNIIITTH 204

Query: 124 GSCVTFLDA 132
            + VTF D+
Sbjct: 205 SNIVTFWDS 213

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026419|gb|EGI66547.1| Serine-threonine kinase receptor-associated protein [Acromyrmex echinatior]

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 106/129 (82%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+TDS  L TGSN+K +RIYDLNKP+A P ++ GH+
Sbjct: 86  VWDAIKGEEVHSFQHNHIVKS-VNFSTDSNHLCTGSNEKLVRIYDLNKPEAAPQIFSGHA 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+HV FF NN+ LI+CA+DKT+R+WD ++  EV++L+F A+P+S+E+S+DG  IT TH
Sbjct: 145 SGIRHVTFFDNNSALITCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGNIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549522|ref|XP_001600320.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Nasonia vitripennis]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDAV GEELHSFQH HIVK  V F+ +S  LATGSN+K +RI+DLNKP+A+P V+ GH+
Sbjct: 86  VWDAVRGEELHSFQHNHIVKC-VEFSKESEYLATGSNEKLVRIFDLNKPEADPQVFSGHT 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+H  FF N+  LI+CA+DKT+R+WD S+  EV+KLEF A+P S+E+S+DG  IT TH
Sbjct: 145 SGIRHATFFDNDKLLITCADDKTLRVWDRSSGLEVKKLEFPAIPRSMELSKDGKIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF D+
Sbjct: 205 SNIVTFWDS 213

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171562|gb|EFN63377.1| Serine-threonine kinase receptor-associated protein [Camponotus floridanus]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 106/129 (82%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+TDS  L TGS +K IRIYDLNKP+A P ++ GH+
Sbjct: 86  VWDAIKGEEIHSFQHKHIVKS-VNFSTDSNYLCTGSYEKLIRIYDLNKPEALPQIFSGHA 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+HV FF NN+ LI+CA+DKT+R+WD ++  E+++L+F A+P+S+E+S+DG+ IT TH
Sbjct: 145 SGIRHVTFFDNNSALITCADDKTLRVWDRNSGQEIKRLDFPAIPSSMEVSKDGSIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195163|gb|EFN77156.1| Serine-threonine kinase receptor-associated protein [Harpegnathos saltator]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 104/129 (80%), Gaps = 1/129 (0%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWDA+ GEE+HSFQH HIVKS V+F+TDS  L T SN+K +RIYDLNKP+  P ++ GH+
Sbjct: 86  VWDAIKGEEVHSFQHNHIVKS-VNFSTDSNNLCTASNEKLVRIYDLNKPEEAPQIFSGHT 144

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
           SGI+HV FF NN+ L++CA+DKT+R+WD ++  EV++L+F A+P+S+E+S+DG  IT TH
Sbjct: 145 SGIRHVTFFDNNSALVTCADDKTLRVWDRNSGQEVKRLDFPAIPSSMEVSKDGKIITTTH 204

Query: 124 GSCVTFLDA 132
            + VTF ++
Sbjct: 205 SNIVTFWNS 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.985	0.402	0.503	6.7e-33
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.970	0.395	0.473	9.1e-29
UNIPROTKB|I3LNC4	363	STRAP "Uncharacterized protein	0.962	0.355	0.480	1.2e-26
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.962	0.368	0.473	1.9e-26
RGD|1311114	350	Strap "serine/threonine kinase	0.962	0.368	0.473	2.5e-26
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.962	0.368	0.473	2.5e-26
UNIPROTKB|B4DNJ6	363	STRAP "Serine-threonine kinase	0.962	0.355	0.473	2.5e-26
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.962	0.368	0.473	2.5e-26
UNIPROTKB|Q5ZL33	350	STRAP "Serine-threonine kinase	0.962	0.368	0.473	2.5e-26
UNIPROTKB|Q5E959	350	STRAP "Serine-threonine kinase	0.962	0.368	0.473	2.5e-26

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 67/133 (50%), Positives = 94/133 (70%)

Query:     2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
             G VW+AV+G E+HSFQH HIVKS V F  DS  + TGSN+K +R+++L +P+A+P  Y G
Sbjct:    86 GKVWNAVTGAEIHSFQHKHIVKS-VAFDRDSENIVTGSNEKLVRVFNLEQPEAQPEEYAG 144

Query:    62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV 121
             H+  IK   F + +  +IS AEDKTVRLWD     EVQ+L+F + PNSLEIS D   +T+
Sbjct:   145 HTGAIKRALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNHILTI 204

Query:   122 THGSCVTFLDANS 134
             +HGS ++F + ++
Sbjct:   205 SHGSSISFWEIDT 217

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 62/131 (47%), Positives = 89/131 (67%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAV+G+E+ +  H HIVKS V+F  DS  L TG NDK +RIYDL+KP+AEP    GH+
Sbjct:    85 VWDAVTGDEVLTLAHKHIVKS-VNFTQDSNYLLTGGNDKVLRIYDLSKPEAEPQEIAGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             S IK   +  N+ +++S A+DKT+RLWD + +  V+ L F A  +S+E   DG T+ +T+
Sbjct:   144 SAIKKALWCNNDQQILSAADDKTIRLWDKNTNEAVKTLSFDASVSSMEYIPDGETLVITY 203

Query:   124 GSCVTFLDANS 134
             G  + F +A+S
Sbjct:   204 GRTIAFYNAHS 214

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|I3LNC4 STRAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 63/131 (48%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GHS
Sbjct:    98 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHS 156

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   157 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 215

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   216 GRSIAFHSAIS 226

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 62/131 (47%), Positives = 84/131 (64%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    85 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +  ++ +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   144 SGIKKALWCSDDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   203 GRSIAFHSAVS 213

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

RGD|1311114 Strap "serine/threonine kinase receptor associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    85 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   203 GRSIAFHSAVS 213

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030054 "cell junction" evidence=ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    85 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   203 GRSIAFHSAVS 213

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|B4DNJ6 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    98 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 156

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   157 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 215

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   216 GRSIAFHSAVS 226

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    85 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   203 GRSIAFHSAVS 213

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q5ZL33 STRAP "Serine-threonine kinase receptor-associated protein" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 84/131 (64%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVKS V F  DS  L TG  DK +RIYDL+KP+AEP V  GH+
Sbjct:    85 VWDAVSGDELITLAHKHIVKS-VDFTQDSNYLLTGGQDKLLRIYDLSKPEAEPDVVSGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +  ++ +++S A+DKTVRLWD S   EV+ L      +S+E   +G  + +T+
Sbjct:   144 SGIKKALWSSDDKQILS-ADDKTVRLWDRSTMTEVKALNVAMSVSSMEYVPEGQILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A +
Sbjct:   203 GKTIAFHSAET 213

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

UNIPROTKB|Q5E959 STRAP "Serine-threonine kinase receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/131 (47%), Positives = 83/131 (63%)

Query:     4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             VWDAVSG+EL +  H HIVK+ V F  DS  L TG  DK +RIYDLNKP+AEP    GH+
Sbjct:    85 VWDAVSGDELMTLAHKHIVKT-VDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT 143

Query:    64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH 123
             SGIK   +   + +++S A+DKTVRLWD +   EV+ L F    +S+E   +G  + +T+
Sbjct:   144 SGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITY 202

Query:   124 GSCVTFLDANS 134
             G  + F  A S
Sbjct:   203 GRSIAFHSAVS 213

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.2 bits (175), Expect = 7e-16
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
           H   V + V F+ D   LATGS D  I+++DL          +GH+  ++ V    + T 
Sbjct: 8   HTGGV-TCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAASADGTY 65

Query: 78  LISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTIT 120
           L S + DKT+RLWD+     V+ L      V +S+  S DG  ++
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYV-SSVAFSPDGRILS 109

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN--KPDAEPTVYR 60
           VWD  +G+ L + + H   V S V F+ D   +A+ S D  I+++DL   K  A      
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNS-VAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TLT 174

Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
           GH+  +  V F  +  +L+S + D T++LWD+S    +  L 
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           VWD  +GE L + + H   V+  V  + D   LA+GS+DK IR++DL           GH
Sbjct: 35  VWDLETGELLRTLKGHTGPVRD-VAASADGTYLASGSSDKTIRLWDLETG-ECVRTLTGH 92

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTIT 120
           +S +  V F  +   L S + DKT+++WDV     +  L      V NS+  S DGT + 
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NSVAFSPDGTFVA 151

Query: 121 V 121
            
Sbjct: 152 S 152

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           +WD  +G+ + +   H   V +SV F+ D  +L + S+D  I+++DL+         RGH
Sbjct: 161 LWDLRTGKCVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGH 218

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
            +G+  V F  +   L S +ED T+R+WD+     VQ L 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           +WD  +G+ L + + H + V +SV F+ D Y LA+GS D  IR++DL   +       GH
Sbjct: 203 LWDLSTGKCLGTLRGHENGV-NSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGH 260

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
           ++ +  + +  +  RL S + D T+R+WD
Sbjct: 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.9 bits (141), Expect = 3e-11
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD  +G+ L S    H       F+ D   LA+GS+D  IR++DL    +      GHS
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTIT 120
           S +  V F  +   L S + D TVRLWD+     +  L         +SL  S DG+ + 
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 121 VTHGS 125
                
Sbjct: 345 SGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 3e-09
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           +WD  +G+ L +        SS+ F+ D    +A+GS+D  IR++DL+      +   GH
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSAS 95
           S  +    F  + + L S + D T+RLWD+ +S
Sbjct: 242 SDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSS 273

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVK-SSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRG 61
           +WD  S   L      H     SV F+ D   LA+GS+D  +R++DL           +G
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 62  HSSGIKHVQFFKNNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT 120
           H   +  + F  + + L    ++D T+RLWD+     ++ LE  +   S+  S DG  ++
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVS 386

Query: 121 VT 122
             
Sbjct: 387 SG 388

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 26  VHFATDSYR-LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           V F ++S R LA GS D  +  YDL  P        GHS  + +V+F  ++T L+S + D
Sbjct: 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST-LVSSSTD 681

Query: 85  KTVRLWDVSASA 96
            T++LWD+S S 
Sbjct: 682 NTLKLWDLSMSI 693

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 6e-07
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
            +GH+  +  V F  +   L S ++D T++LWD
Sbjct: 7  TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 31  DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE-DKTVRL 89
           +S  LA+ S D  ++++DL+ P        GHS  +  + F  +   L S +  D T++L
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 90  WDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGS 125
           WD+     +  L       +SL  S DG  +  +  S
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
             +GH+  +  V F  +   L S ++D TVR+WD
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD  +G+ L + +  H    SV F+ D   +++GS D  +R++DL+          GH+
Sbjct: 355 LWDLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS-LLRNLDGHT 412

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
           S +  + F  +   L S + D T+RLWD+ 
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 4   VWDAVSGEELHSF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
           +WD  +G+ L S     H   V S       S  ++ GS+D  IR++DL     +P    
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT--GKPLKTL 367

Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
              S +  V F  +   + S + D TVRLWD+S  + ++ L+       SL+ S DG ++
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
            +GH+ G+  V F  +   L + + D T+++WD+ 
Sbjct: 4  TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE 39

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRLISCA- 82
           S+ F+ D   L +GS+D  I+++DL+  +       G H S +  +     +   I  A 
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 83  --EDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVTHG 124
              D TV+LWD+S   ++ +   G      SL  S DG  +     
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 9  SGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYD 48
          SGE L + + H   V +SV F+ D   LA+GS+D  I+++D
Sbjct: 1  SGELLKTLKGHTGPV-TSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYD 48
          G+ L + +      +SV F+ D   LA+GS+D  +R++D
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG0272|consensus	459		99.97
KOG0315|consensus	311		99.97
KOG0271|consensus	480		99.97
KOG0272|consensus	459		99.97
KOG0263|consensus	707		99.97
KOG0263|consensus	707		99.97
KOG0279|consensus	315		99.96
KOG0279|consensus	315		99.96
KOG0266|consensus	456		99.96
KOG0286|consensus	343		99.96
KOG0266|consensus	456		99.96
PTZ00420	568	coronin; Provisional	99.95
KOG0295|consensus	406		99.94
KOG0271|consensus	480		99.94
KOG0285|consensus	460		99.94
PTZ00421	493	coronin; Provisional	99.94
PTZ00421	493	coronin; Provisional	99.93
KOG0291|consensus	893		99.93
KOG0278|consensus	334		99.93
KOG0273|consensus	524		99.93
KOG0291|consensus	893		99.93
KOG0315|consensus	311		99.93
KOG0286|consensus	343		99.93
KOG0284|consensus	464		99.93
KOG0276|consensus	794		99.92
KOG0276|consensus	794		99.91
KOG0319|consensus	775		99.91
KOG0645|consensus	312		99.91
KOG0264|consensus	422		99.91
KOG0319|consensus	775		99.91
KOG0282|consensus	503		99.91
KOG0295|consensus	406		99.91
KOG0302|consensus	440		99.91
KOG0283|consensus	712		99.9
KOG0275|consensus	508		99.9
KOG0269|consensus	839		99.9
KOG0273|consensus	524		99.9
KOG0265|consensus	338		99.9
KOG0284|consensus	464		99.9
KOG0310|consensus	487		99.9
KOG1407|consensus	313		99.9
KOG0296|consensus	399		99.9
KOG0283|consensus	712		99.9
KOG0264|consensus	422		99.9
PTZ00420	568	coronin; Provisional	99.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.9
KOG0282|consensus	503		99.9
KOG0292|consensus	1202		99.9
KOG0269|consensus	839		99.89
KOG0281|consensus	499		99.89
KOG0277|consensus	311		99.89
KOG0294|consensus	362		99.89
KOG0313|consensus	423		99.89
KOG0285|consensus	460		99.89
KOG0277|consensus	311		99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0316|consensus	307		99.89
KOG0292|consensus	1202		99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0289|consensus	506		99.89
KOG0289|consensus	506		99.89
KOG0268|consensus	433		99.88
KOG0318|consensus	603		99.88
KOG0645|consensus	312		99.88
KOG0265|consensus	338		99.88
KOG1446|consensus	311		99.88
KOG0278|consensus	334		99.88
KOG0267|consensus	825		99.88
KOG1446|consensus	311		99.87
KOG0316|consensus	307		99.87
KOG0772|consensus	641		99.87
KOG0647|consensus	347		99.87
KOG0274|consensus	537		99.86
KOG0305|consensus	484		99.86
KOG1407|consensus	313		99.86
KOG0973|consensus	942		99.86
KOG0281|consensus	499		99.86
KOG0639|consensus	705		99.86
KOG0305|consensus	484		99.86
KOG0772|consensus	641		99.86
KOG2110|consensus	391		99.86
KOG1539|consensus	910		99.86
KOG4283|consensus	397		99.86
KOG0310|consensus	487		99.85
KOG0318|consensus	603		99.85
KOG0646|consensus	476		99.85
KOG0300|consensus	481		99.85
KOG0308|consensus	735		99.85
KOG0647|consensus	347		99.85
KOG0293|consensus	519		99.84
KOG0275|consensus	508		99.84
KOG0640|consensus	430		99.84
KOG0643|consensus	327		99.84
KOG0640|consensus	430		99.83
KOG0306|consensus	888		99.83
KOG1273|consensus	405		99.83
KOG0274|consensus	537		99.83
KOG0296|consensus	399		99.83
KOG0302|consensus	440		99.82
KOG0288|consensus	459		99.82
KOG0303|consensus	472		99.82
KOG1274|consensus	933		99.82
KOG0306|consensus	888		99.82
KOG0294|consensus	362		99.82
KOG0270|consensus	463		99.82
KOG0313|consensus	423		99.81
KOG0293|consensus	519		99.81
KOG0288|consensus	459		99.8
KOG0300|consensus	481		99.8
KOG1036|consensus	323		99.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.8
KOG1445|consensus	1012		99.79
KOG0643|consensus	327		99.79
KOG0639|consensus	705		99.79
KOG2111|consensus	346		99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.78
KOG0299|consensus	479		99.77
KOG4378|consensus	673		99.77
KOG0308|consensus	735		99.77
KOG0270|consensus	463		99.77
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
KOG1063|consensus	764		99.77
KOG0301|consensus	745		99.77
KOG0267|consensus	825		99.77
KOG1034|consensus	385		99.77
KOG2096|consensus	420		99.77
KOG1188|consensus	376		99.76
KOG1332|consensus	299		99.75
KOG0641|consensus	350		99.75
KOG0641|consensus	350		99.75
KOG0973|consensus	942		99.74
KOG1007|consensus	370		99.74
KOG1274|consensus	933		99.74
KOG0303|consensus	472		99.73
KOG2055|consensus	514		99.73
KOG2055|consensus	514		99.73
KOG0268|consensus	433		99.73
KOG1009|consensus	434		99.72
KOG1188|consensus	376		99.72
KOG2048|consensus	691		99.72
KOG0321|consensus	720		99.72
KOG1332|consensus	299		99.71
KOG0301|consensus	745		99.7
KOG0646|consensus	476		99.7
KOG0322|consensus	323		99.7
KOG1273|consensus	405		99.69
KOG2048|consensus	691		99.69
KOG4283|consensus	397		99.69
KOG1036|consensus	323		99.69
KOG1408|consensus	1080		99.69
KOG2394|consensus	636		99.69
KOG4378|consensus	673		99.69
KOG0771|consensus	398		99.69
KOG1034|consensus	385		99.69
KOG1445|consensus	1012		99.68
KOG1310|consensus	758		99.68
KOG2919|consensus	406		99.67
KOG1517|consensus	1387		99.67
KOG0649|consensus	325		99.67
KOG1007|consensus	370		99.67
KOG2919|consensus	406		99.67
KOG2096|consensus	420		99.66
KOG0299|consensus	479		99.66
KOG0290|consensus	364		99.66
KOG2445|consensus	361		99.66
KOG0307|consensus	1049		99.65
KOG2106|consensus	626		99.65
KOG0307|consensus	1049		99.65
KOG4328|consensus	498		99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1963|consensus	792		99.64
KOG1063|consensus	764		99.63
KOG2110|consensus	391		99.63
KOG1009|consensus	434		99.62
KOG1408|consensus	1080		99.62
KOG0321|consensus	720		99.62
KOG0650|consensus	733		99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG1272|consensus	545		99.61
KOG2394|consensus	636		99.61
KOG0771|consensus	398		99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG0290|consensus	364		99.6
KOG3881|consensus	412		99.6
KOG2139|consensus	445		99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.59
KOG0642|consensus	577		99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG4328|consensus	498		99.57
KOG1538|consensus	1081		99.57
KOG1272|consensus	545		99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG1539|consensus	910		99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.56
KOG4227|consensus	609		99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG0649|consensus	325		99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
KOG1523|consensus	361		99.54
KOG2106|consensus	626		99.53
KOG0642|consensus	577		99.52
KOG1524|consensus	737		99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG0644|consensus	1113		99.5
KOG3881|consensus	412		99.5
KOG2111|consensus	346		99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG2321|consensus	703		99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG2139|consensus	445		99.48
KOG1523|consensus	361		99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG0322|consensus	323		99.45
KOG0650|consensus	733		99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.44
KOG0974|consensus	967		99.44
KOG2445|consensus	361		99.44
KOG1538|consensus	1081		99.43
KOG0974|consensus	967		99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG1240|consensus	1431		99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
KOG4547|consensus	541		99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
KOG3914|consensus	390		99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG1587|consensus	555		99.33
KOG1587|consensus	555		99.33
KOG1310|consensus	758		99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
KOG3914|consensus	390		99.3
KOG4227|consensus	609		99.3
KOG4714|consensus	319		99.3
KOG2321|consensus	703		99.3
KOG2315|consensus	566		99.29
KOG4497|consensus	447		99.29
KOG1517|consensus	1387		99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.24
KOG4532|consensus	344		99.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.21
KOG4547|consensus	541		99.21
KOG0644|consensus	1113		99.2
KOG0280|consensus	339		99.2
KOG1334|consensus	559		99.17
KOG1963|consensus	792		99.13
KOG1524|consensus	737		99.12
KOG4497|consensus	447		99.09
KOG2695|consensus	425		99.09
KOG0280|consensus	339		99.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.08
KOG1409|consensus	404		99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG2041|consensus	1189		99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
KOG1240|consensus	1431		99.01
KOG1064|consensus	2439		98.98
KOG2314|consensus	698		98.9
KOG1354|consensus	433		98.89
KOG2315|consensus	566		98.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.85
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.84
KOG1275|consensus	1118		98.84
KOG1064|consensus	2439		98.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.82
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.8
KOG1354|consensus	433		98.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.78
PRK02888	635	nitrous-oxide reductase; Validated	98.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.76
KOG3621|consensus	726		98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.72
KOG4714|consensus	319		98.71
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.71
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.71
KOG0309|consensus	1081		98.7
KOG1334|consensus	559		98.69
KOG2695|consensus	425		98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
KOG4190|consensus	1034		98.65
KOG4640|consensus	665		98.65
KOG4532|consensus	344		98.61
KOG1912|consensus	1062		98.61
KOG1409|consensus	404		98.6
KOG1645|consensus	463		98.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
KOG2066|consensus	846		98.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.52
KOG2314|consensus	698		98.5
KOG2041|consensus	1189		98.48
KOG0309|consensus	1081		98.48
KOG4640|consensus	665		98.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.46
KOG1832|consensus	1516		98.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.41
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.41
PRK02888	635	nitrous-oxide reductase; Validated	98.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.31
KOG3621|consensus	726		98.31
KOG1645|consensus	463		98.29
KOG2066|consensus	846		98.28
KOG0882|consensus	558		98.26
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.23
KOG2395|consensus	644		98.22
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
COG3391	381	Uncharacterized conserved protein [Function unknow	98.17
PRK13616	591	lipoprotein LpqB; Provisional	98.16
KOG4190|consensus	1034		98.14
KOG2114|consensus	933		98.13
KOG3617|consensus	1416		98.13
KOG1008|consensus	783		98.12
KOG1912|consensus	1062		98.09
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.06
KOG1008|consensus	783		98.01
KOG3617|consensus	1416		97.99
KOG1920|consensus	1265		97.97
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.89
KOG4649|consensus	354		97.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.87
KOG2079|consensus	1206		97.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
KOG2114|consensus	933		97.84
COG3391	381	Uncharacterized conserved protein [Function unknow	97.84
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.84
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.79
KOG0882|consensus	558		97.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
KOG1275|consensus	1118		97.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.71
KOG1920|consensus	1265		97.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.69
KOG4649|consensus	354		97.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.68
KOG1832|consensus	1516		97.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.57
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.51
PRK13616	591	lipoprotein LpqB; Provisional	97.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	97.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.36
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.34
KOG2444|consensus	238		97.33
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.31
KOG2079|consensus	1206		97.26
KOG2395|consensus	644		97.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	97.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.95
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.91
COG5167	776	VID27 Protein involved in vacuole import and degra	96.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.88
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.81
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.8
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.68
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.62
KOG4460|consensus	741		96.6
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.24
PHA02713	557	hypothetical protein; Provisional	96.24
KOG1916|consensus	1283		96.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.95
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.92
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.86
KOG4499|consensus	310		95.84
PRK10115	686	protease 2; Provisional	95.82
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.78
COG4590	733	ABC-type uncharacterized transport system, permeas	95.78
KOG2247|consensus	615		95.76
KOG3630|consensus	1405		95.73
KOG2377|consensus	657		95.66
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.55
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	95.52
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	95.37
KOG3630|consensus	1405		95.24
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.09
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	95.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.84
KOG4441|consensus	571		94.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.77
KOG2444|consensus	238		94.38
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.18
COG5167	776	VID27 Protein involved in vacuole import and degra	94.13
PRK13684	334	Ycf48-like protein; Provisional	94.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.06
PHA03098	534	kelch-like protein; Provisional	94.03
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.94
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.84
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	93.82
KOG1897|consensus	1096		93.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.24
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.12
PHA02713	557	hypothetical protein; Provisional	93.01
KOG2377|consensus	657		92.91
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.8
KOG1916|consensus	1283		92.8
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.19
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.02
KOG4460|consensus	741		91.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.9
KOG1897|consensus	1096		91.66
COG5276	370	Uncharacterized conserved protein [Function unknow	91.55
KOG2280|consensus	829		91.03
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.86
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.65
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.61
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.51
KOG4441|consensus	571		90.28
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.15
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.11
PHA03098	534	kelch-like protein; Provisional	89.88
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.8
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.72
KOG4499|consensus	310		89.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.44
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	89.3
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	88.98
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	88.16
COG4880	603	Secreted protein containing C-terminal beta-propel	88.05
PRK13684	334	Ycf48-like protein; Provisional	87.98
KOG1900|consensus	1311		87.61
KOG3616|consensus	1636		87.58
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.36
KOG1520|consensus	376		86.5
KOG2247|consensus	615		86.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.27
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.82
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.67
PHA02790	480	Kelch-like protein; Provisional	84.58
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	83.81
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	83.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.09
PRK13615	557	lipoprotein LpqB; Provisional	81.59
PRK10115	686	protease 2; Provisional	81.52
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	80.52
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.48

>KOG0272|consensus

Probab=99.97  E-value=1.1e-31  Score=162.35  Aligned_cols=133  Identities=20%  Similarity=0.253  Sum_probs=121.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ++++|++.+..++..++++..-+..++|+|+|++|++++.|.+-++||+.++.... ...+|...|.+++|+|||..+++
T Consensus       242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~t  320 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGSLAAT  320 (459)
T ss_pred             ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCceeec
Confidence            58999999889999999666666669999999999999999999999999976554 57899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |+.|..-+|||+++++++..+. |..+|.++.|+|+|..+++| +|++++|||++.
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            9999999999999999999887 67899999999999999986 689999999973

>KOG0315|consensus

Probab=99.97  E-value=9e-30  Score=145.66  Aligned_cols=133  Identities=21%  Similarity=0.415  Sum_probs=122.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |||+|...+|.+..+++|.+..++++...|+++.|++++. ..|++||+++... +...+.+|.+.|..+.|..+|++++
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy   99 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY   99 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE
Confidence            6999999999999999999999999999999999999876 5799999998765 6778999999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +|++||+++|||++...+.+.+.+.++|+++..+|+...|+++ .+|.|++||+..
T Consensus       100 TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence            9999999999999999999999999999999999998877777 679999999863

>KOG0271|consensus

Probab=99.97  E-value=9.2e-30  Score=153.03  Aligned_cols=133  Identities=22%  Similarity=0.329  Sum_probs=118.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-----CC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-----NN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~   75 (134)
                      |+|+||+.+..++.+.+++..-+.|++|+|||+.|++|+.||.|++||..++++....+.+|...|++++|.|     ..
T Consensus       138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC  217 (480)
T ss_pred             eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence            6899999999999999966666666999999999999999999999999999988889999999999999986     56


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++|++++.||.++|||+..+.++..+. |..+|+|++|--+|-....+.|++|++|+..
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc
Confidence            889999999999999999999988887 6889999999866543334579999999864

>KOG0272|consensus

Probab=99.97  E-value=2.6e-30  Score=156.41  Aligned_cols=132  Identities=22%  Similarity=0.306  Sum_probs=116.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      -++||+.+++.+...+++...+.+++|.|||.++++|+.|..-+|||++++.++ ..+.+|..+|.+++|+|+|..++||
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy~lATg  363 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGYHLATG  363 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCceEEeec
Confidence            479999999988777755555555999999999999999999999999998866 5788999999999999999999999


Q ss_pred             eCCCcEEEEecCCCceeEEEe-cCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISR-DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +.|++++|||++..+++.+++ |.+.|..++|+| .|.+|+++ .|+++++|..++
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             CCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence            999999999999999988887 678899999999 56777765 799999998653

>KOG0263|consensus

Probab=99.97  E-value=2.9e-29  Score=160.92  Aligned_cols=133  Identities=23%  Similarity=0.371  Sum_probs=124.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |+|+|.+.+..++..++++...+..+.|+|.|-+|++++.|++.++|...... +.+.+.+|.+.|.|++|+|+..++++
T Consensus       474 svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  474 SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             ceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccccceEEECCccccccc
Confidence            68999999999999999888888889999999999999999999999988744 55788999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |+.|.++++||..+|..++.+. |..+|.+++|+|+|++|+++ .||.|.+||+.+
T Consensus       553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  553 GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            9999999999999999999887 68999999999999999997 679999999863

>KOG0263|consensus

Probab=99.97  E-value=1.5e-29  Score=162.17  Aligned_cols=132  Identities=24%  Similarity=0.445  Sum_probs=120.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.++|......+++.+.++..-+.|+.|+|+++++++||.|..+++||..++.. .+.+.||.++|.+++|+|+|++|++
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEee
Confidence            468999999999999997777777899999999999999999999999999775 4688999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+.|+.|.+||+.+++.+..+. |.+.+.++.|+.+|..|+++ .|.+|++||+.
T Consensus       595 g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            9999999999999998887765 67889999999999999986 68999999985

>KOG0279|consensus

Probab=99.96  E-value=3.9e-28  Score=140.62  Aligned_cols=132  Identities=20%  Similarity=0.304  Sum_probs=116.8

Q ss_pred             CeeEeecCCCceeeEEe-eC-CCceeeEEEccC--CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQ-HP-HIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      ||.+||+. +.+..++. +. ...++|+.|+|+  ...|++++.|+.+++||+++- +....+.+|.+.++.++++|||.
T Consensus       128 Tiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGs  205 (315)
T KOG0279|consen  128 TIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGS  205 (315)
T ss_pred             eeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCC
Confidence            68899987 55555554 33 677888999997  688999999999999999984 45677899999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      .+++|+.||.+.+||++.++....+.+...|.+++|+|+..+|+.+.+..|+|||+++
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence            9999999999999999999999999999999999999999888888788899999864

>KOG0279|consensus

Probab=99.96  E-value=4.2e-28  Score=140.50  Aligned_cols=132  Identities=25%  Similarity=0.371  Sum_probs=112.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeC--CCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKN--NTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~   77 (134)
                      ++++||+.+++....|.++...+.+++|++|.+++++|+.|.++++|+....... .... .+.+.|+++.|+|+  ..+
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCCCCCcE
Confidence            5899999999999999966666656999999999999999999999998764332 2222 23788999999997  678


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++++.|+++++||+++.+....+. +...++.++++|||...+.| .||.+.+||++
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            9999999999999999888776665 57889999999999999986 68999999986

>KOG0266|consensus

Probab=99.96  E-value=2.4e-27  Score=151.40  Aligned_cols=134  Identities=28%  Similarity=0.432  Sum_probs=117.9

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      .+++|++.+++  .+..+..+...+..++|+|++.++++++.|+++++||+.........+++|...|++++|+|+++.+
T Consensus       182 ~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i  261 (456)
T KOG0266|consen  182 LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLL  261 (456)
T ss_pred             cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEE
Confidence            47889987777  6666665666666699999999999999999999999955545667889999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++|+.|++|++||++++++...+. |...|.+++|++++.+++++ .|+.|++||+.+
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET  319 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence            999999999999999999999888 57799999999999999986 589999999864

>KOG0286|consensus

Probab=99.96  E-value=7.3e-27  Score=136.30  Aligned_cols=131  Identities=21%  Similarity=0.400  Sum_probs=117.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |..+||+++|+.+..|.++..-+-++.++| +++.+++|+.|+..++||++.+.. .+.+.+|...|++++|.|+|.-++
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~afa  245 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGDAFA  245 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCCeee
Confidence            457999999999999995444444499999 999999999999999999999754 578999999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      +|+.|++.++||++..+.+..+.++   .+|++++|+..|++|++| .|.++.+||.
T Consensus       246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            9999999999999999999888864   578999999999999997 6799999996

>KOG0266|consensus

Probab=99.96  E-value=1.2e-26  Score=148.27  Aligned_cols=132  Identities=25%  Similarity=0.449  Sum_probs=114.4

Q ss_pred             CeeEeec-CCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDA-VSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|+|||+ ..+..+++++++...+.+++|+|+++.+++|+.|+.|++||+++++. ...+.+|.+.|+.++|+++++.++
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECCCCCEEE
Confidence            5899999 55688999986666667799999999999999999999999999654 467899999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCc--eeEEEec-C-C-CCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASA--EVQKLEF-G-A-VPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~--~~~~~~~-~-~-~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.|+.+++||+.++.  +...+.. . . ++.+++|+|++.+++++ .|+.+++||+.
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            99999999999999998  4455442 2 2 58999999999999987 57899999986

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=8.5e-26  Score=145.89  Aligned_cols=133  Identities=19%  Similarity=0.293  Sum_probs=110.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCC-------CCeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDA-------EPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~-------~~~~~~~~~~~v~~~~~~~   73 (134)
                      |++|+.....++..+.++...+.+++|+|+ +++|++|+.|+.|++||+.+...       +...+.+|...|.+++|+|
T Consensus        56 I~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P  135 (568)
T PTZ00420         56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP  135 (568)
T ss_pred             EEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence            567777666677777766666666999996 78999999999999999976421       2235678999999999999


Q ss_pred             CCCEE-EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          74 NNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++..+ ++++.|+.|++||+++++....+.+...+.+++|+|+|.+++++ .|+.|++||+++
T Consensus       136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        136 MNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence            88764 68899999999999999887777777889999999999999876 689999999874

>KOG0295|consensus

Probab=99.94  E-value=1.2e-25  Score=134.32  Aligned_cols=133  Identities=20%  Similarity=0.298  Sum_probs=117.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-----
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-----   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----   75 (134)
                      +|+.||..+|.+++++.++..-+..++.+.||..+++++.|..+++|-+.++.+. ..+++|..+|.+++|.|..     
T Consensus       216 tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i  294 (406)
T KOG0295|consen  216 TIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSI  294 (406)
T ss_pred             ceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCcch
Confidence            6899999999999999966666666999999999999999999999999986544 4678999999999997631     


Q ss_pred             ----------CEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          76 ----------TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        76 ----------~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                                +++.+++.|++|++||+.++.++.++. |.+.|+.++|+|.|+||+++ .|+++++||+++
T Consensus       295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             hhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence                      588899999999999999999999887 68899999999999999986 579999999864

>KOG0271|consensus

Probab=99.94  E-value=1.2e-26  Score=139.80  Aligned_cols=130  Identities=20%  Similarity=0.366  Sum_probs=115.1

Q ss_pred             CeeEeecC-CCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAV-SGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      ++.+|+.. +.+++....++...++.+.|+||++++++++.|..|++|+.++++.+ ..+++|-+.|..++|+.|.+.|+
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsaDsRLlV  425 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSADSRLLV  425 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-hhhhhccceeEEEEeccCccEEE
Confidence            46789876 45577777755555555999999999999999999999999998765 57899999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +|+.|.++++||+++.+....++ |..+|.++.|+|||..++++ .|..+++|.
T Consensus       426 S~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  426 SGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999988888 78999999999999999986 578899884

>KOG0285|consensus

Probab=99.94  E-value=2e-25  Score=133.64  Aligned_cols=132  Identities=21%  Similarity=0.338  Sum_probs=118.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ||.|||+.+|+...++.++-..+..+++++...++++++.|+.|+.||+...+ ..+.+.+|-..|.+++.+|.-+.|++
T Consensus       174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-vIR~YhGHlS~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-VIRHYHGHLSGVYCLDLHPTLDVLVT  252 (460)
T ss_pred             eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-hHHHhccccceeEEEeccccceeEEe
Confidence            68999999999999999666666669999999999999999999999998855 45678999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      ++.|.++++||+++...+..+. |..+|..+.+.|....+++ +.|++|++||++
T Consensus       253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence            9999999999999999998888 7899999999886655555 579999999985

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=6.3e-24  Score=136.22  Aligned_cols=119  Identities=23%  Similarity=0.319  Sum_probs=100.9

Q ss_pred             EeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEEEEeeCC-CEEEEeeCCCcE
Q psy6446          16 FQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTV   87 (134)
Q Consensus        16 ~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   87 (134)
                      +.++...+.+++|+| ++++|++++.|+.|++||+.+..      .....+.+|...|.+++|+|++ +.|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            444455566699999 88999999999999999997642      2345678999999999999975 689999999999


Q ss_pred             EEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          88 RLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++||+.+++....+. +...|.+++|+|+|.+++++ .|+.|++||+++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence            999999998877776 56789999999999988876 689999999874

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=7.9e-24  Score=135.75  Aligned_cols=133  Identities=16%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             CeeEeecCCC-------ceeeEEeeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe
Q psy6446           1 MGTVWDAVSG-------EELHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~   72 (134)
                      +|++||+.++       +++..+.++...+.+++|+|++ +.|++++.|+.|++||+.++.. ...+.+|...|.+++|+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWN  177 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEE
Confidence            5899999765       3466677555666669999975 6899999999999999998654 35677899999999999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEec-CC-CCeEEEEccCCcEEEE-e----cCCeEEEEeCCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GA-VPNSLEISRDGTTITV-T----HGSCVTFLDANS  134 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~-~v~~~~~~~~~~~l~~-~----~~~~i~i~d~~t  134 (134)
                      |++..|++++.|+.|++||+++++.+..+.. .. ....+.|.+++..+++ +    .|+.|++||+++
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            9999999999999999999999988877653 32 3457788888776664 3    268999999863

>KOG0291|consensus

Probab=99.93  E-value=1.5e-24  Score=139.74  Aligned_cols=130  Identities=23%  Similarity=0.345  Sum_probs=110.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +.||++++...+.+.+++...+++++++|||+++++|+.||.|++||...+.+. .++..|...|+.+.|+..++.+++.
T Consensus       332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~-vTFteHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF-VTFTEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE-EEeccCCCceEEEEEEecCCEEEEe
Confidence            679999999888888866666667999999999999999999999999988776 4789999999999999999999999


Q ss_pred             eCCCcEEEEecCCCceeEEEe---------------------------------------------cCCCCeEEEEccCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLE---------------------------------------------FGAVPNSLEISRDG  116 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~---------------------------------------------~~~~v~~~~~~~~~  116 (134)
                      +-||+|+.||+...+..+++.                                             |+++|.+++|+|++
T Consensus       411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~  490 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG  490 (893)
T ss_pred             ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence            999999999986544322221                                             45688889999999


Q ss_pred             cEEEEe-cCCeEEEEeC
Q psy6446         117 TTITVT-HGSCVTFLDA  132 (134)
Q Consensus       117 ~~l~~~-~~~~i~i~d~  132 (134)
                      ..|+++ .|.+|++||+
T Consensus       491 ~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  491 SLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CeEEeccccceEEEEEe
Confidence            888876 5889999986

>KOG0278|consensus

Probab=99.93  E-value=3.7e-26  Score=131.28  Aligned_cols=133  Identities=50%  Similarity=0.841  Sum_probs=123.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.++||.-+|..+..|+|...+.. ++|+.|.+.|++|+.+..+++||++..+.+...+.+|.+.|..+-|....+.+++
T Consensus        82 takvw~a~tgdelhsf~hkhivk~-~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKA-VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeee-EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence            357899999999999998876666 9999999999999999999999999988888889999999999999998889999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++.|++|++||.+++..+..+....+|.++.++++|+++.++..+.|.+||.++
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc
Confidence            999999999999999999999999999999999999999999999999999864

>KOG0273|consensus

Probab=99.93  E-value=2.6e-24  Score=132.37  Aligned_cols=132  Identities=20%  Similarity=0.325  Sum_probs=117.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN------   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------   75 (134)
                      |+|+-+....|+.++.++...+.++.|+|.+.+|++++.|+++++|.+...... .-+.+|...|..+.|+|.+      
T Consensus       341 i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-~~l~~Hskei~t~~wsp~g~v~~n~  419 (524)
T KOG0273|consen  341 IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-HDLQAHSKEIYTIKWSPTGPVTSNP  419 (524)
T ss_pred             EEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-hhhhhhccceeeEeecCCCCccCCC
Confidence            678888888899999977777777999999999999999999999998775544 4578899999999999865      


Q ss_pred             ---CEEEEeeCCCcEEEEecCCCceeEEE-ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          76 ---TRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        76 ---~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                         ..+++++.|+++++||...+.++..+ .|..+|.+++|+|+|+++++| .||.|++|++++
T Consensus       420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence               46889999999999999999999988 689999999999999999998 589999999864

>KOG0291|consensus

Probab=99.93  E-value=3.6e-24  Score=138.06  Aligned_cols=132  Identities=27%  Similarity=0.417  Sum_probs=114.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC----------------------------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD----------------------------   53 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~----------------------------   53 (134)
                      |+|||..+|-|..+|..+...++++.|+..++.+++.+.||+|+.||+....                            
T Consensus       374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG  453 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG  453 (893)
T ss_pred             EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence            7999999999999999666667779999999999999999999999986211                            


Q ss_pred             ---------------CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCC-ceeEEEecCCCCeEEEEccCCc
Q psy6446          54 ---------------AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGT  117 (134)
Q Consensus        54 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~v~~~~~~~~~~  117 (134)
                                     ++...+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ....++.....+..++|+|+|+
T Consensus       454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK  533 (893)
T ss_pred             ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence                           112246789999999999999999999999999999998643 4667777888999999999999


Q ss_pred             EEEEe-cCCeEEEEeCC
Q psy6446         118 TITVT-HGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~-~~~~i~i~d~~  133 (134)
                      .++++ .||+|.+||++
T Consensus       534 elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  534 ELAVATLDGQITFFDIK  550 (893)
T ss_pred             eEEEEEecceEEEEEhh
Confidence            88875 79999999975

>KOG0315|consensus

Probab=99.93  E-value=7.3e-24  Score=121.70  Aligned_cols=130  Identities=22%  Similarity=0.334  Sum_probs=110.4

Q ss_pred             eeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      ||+||+.+++  ++.+|+++..-+.++.|..+|+.+++|+.||.++|||++..... +. -.|..+|+++..+|+...|+
T Consensus        63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~-~~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RN-YQHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hh-ccCCCCcceEEecCCcceEE
Confidence            8999999876  58889966555555999999999999999999999999985443 33 35779999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      ++..+|.|++||+.+..+...+-  ....+.++...|||..+++.. .|+..+|++-
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            99999999999999886665554  256789999999999998874 5999999974

>KOG0286|consensus

Probab=99.93  E-value=3.4e-24  Score=125.26  Aligned_cols=130  Identities=28%  Similarity=0.414  Sum_probs=113.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC--CCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG--HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l   78 (134)
                      +.++||++++.+++.|.+++.-++++.|.|+|.-|++|+.|+..++||++...++ ..+..  ...+|++++|+..|++|
T Consensus       210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCceeEEEcccccEE
Confidence            3589999999999999976666667999999999999999999999999986544 33332  23579999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++|..|..+.+||.-.++....+. |+..|.|+..+|||..++++ .|..++||.
T Consensus       289 fagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  289 FAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999888887776 78999999999999999987 589999994

>KOG0284|consensus

Probab=99.93  E-value=1.8e-25  Score=135.42  Aligned_cols=132  Identities=21%  Similarity=0.388  Sum_probs=114.3

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      .|++|+.. ...++.++ ++...+.+++|+|+...|++++.||.|+|||....++. ..+.+|.-.|.+++|+|....++
T Consensus       161 ~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  161 MIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             eEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-heeccCCCCcceeccCCccceeE
Confidence            36778864 44455555 66566666999999999999999999999999987655 46799999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.|+.|++||.+++.++.++. |...|..+.|.|++.+|+++ .|..+++||+++
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            99999999999999999999887 68899999999999999975 689999999873

>KOG0276|consensus

Probab=99.92  E-value=3.8e-24  Score=135.81  Aligned_cols=133  Identities=22%  Similarity=0.380  Sum_probs=115.2

Q ss_pred             CeeEeecCCC-ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee--CCC
Q psy6446           1 MGTVWDAVSG-EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNT   76 (134)
Q Consensus         1 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~   76 (134)
                      +|++||++.+ .+.++|+++...+-.++|+| |.+.+++++.|++|++|.+....+ ..++.+|...|+++++-+  |..
T Consensus       120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~gdkp  198 (794)
T KOG0276|consen  120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTGGDKP  198 (794)
T ss_pred             EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccCCCcc
Confidence            5899999854 57788885555544499999 788999999999999999988654 467899999999999987  447


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +|++|+.|.++++||.++..|++++. |...|..+.|+|.=..+++| .||+++||+..|
T Consensus       199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            99999999999999999999999998 77889999999999988886 689999998754

>KOG0276|consensus

Probab=99.91  E-value=9.3e-23  Score=129.60  Aligned_cols=134  Identities=19%  Similarity=0.277  Sum_probs=119.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      .|+||+..+++.++.|+.+...+.|++.+|...+++++|.|-.|++||.+..-...+.+.+|..-|.+++|+| |.+.++
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence            3899999999999999955566666999999999999999999999999987777789999999999999999 778999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCC--cEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG--TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++-|++|++|.+....+..++. |...|+|+.+-+-|  ++++++ .|..|++||..|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            99999999999999988888887 67889999998755  688887 468999999864

>KOG0319|consensus

Probab=99.91  E-value=1.9e-23  Score=134.21  Aligned_cols=133  Identities=25%  Similarity=0.404  Sum_probs=112.7

Q ss_pred             CeeEeecCCCce-----eeE----EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE
Q psy6446           1 MGTVWDAVSGEE-----LHS----FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~   71 (134)
                      |+++|++...+.     +.+    ...++.-++|++.+|+.+++++||.|.+.++|++.. ......+.+|...|.++.|
T Consensus       435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEe
Confidence            588999875221     111    123344455599999999999999999999999985 4455689999999999999


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      +|..+.++|++.|.+|+||.+.+..+++++. |...|..+.|-.+|..+++ ++||-|++|++++
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            9999999999999999999999999999998 7899999999999988776 4799999999875

>KOG0645|consensus

Probab=99.91  E-value=2.8e-22  Score=116.22  Aligned_cols=132  Identities=16%  Similarity=0.244  Sum_probs=106.0

Q ss_pred             CeeEeecCC---CceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVS---GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +|++|+..+   -.+...+. .+...+..++|+|.|++|+++|.|.++.||.-..+. .....+.+|...|.+++|+++|
T Consensus        38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence            489999874   33444444 344455559999999999999999999999865432 3346788999999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCcee---EEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEV---QKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ++|+++++|+.+.+|.+..+...   ..+. |...|..+.|+|...+|+++ .|++|++|.-
T Consensus       118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            99999999999999998865543   3333 67889999999998888875 7999999974

>KOG0264|consensus

Probab=99.91  E-value=6.2e-23  Score=125.34  Aligned_cols=132  Identities=20%  Similarity=0.352  Sum_probs=108.2

Q ss_pred             eeEeecC--CCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-CCE
Q psy6446           2 GTVWDAV--SGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-NTR   77 (134)
Q Consensus         2 i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~   77 (134)
                      +.|||++  +.++.+..+.+...+.|++|+| ++..||+|+.|++|++||++........+.+|...|.++.|+|+ ...
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence            6799999  5556666676667777799999 77888999999999999999988778889999999999999995 567


Q ss_pred             EEEeeCCCcEEEEecCCCce------------eEEEe---cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAE------------VQKLE---FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~------------~~~~~---~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      |++++.|+.+.+||+..-..            ...+.   |...|..+.|+|+..+++++  .|+.+.||++.
T Consensus       332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            78999999999999864221            12233   45788999999999887765  67999999864

>KOG0319|consensus

Probab=99.91  E-value=5.2e-23  Score=132.22  Aligned_cols=130  Identities=21%  Similarity=0.332  Sum_probs=120.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +.+||+++....+..+.++.+.+.|+.|+|..+.++++|.|.+|+||.+.+..+. .++.||...|....|-.++..|++
T Consensus       486 taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  486 TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEe
Confidence            5689999999999999988888888999999999999999999999999997765 678999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++.||.+++|++.++.|.+++. |...|.+++-+|....++++ +||.|.+|-
T Consensus       565 ~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  565 AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999997 68899999999999877765 789999994

>KOG0282|consensus

Probab=99.91  E-value=4.3e-24  Score=131.53  Aligned_cols=124  Identities=16%  Similarity=0.324  Sum_probs=110.6

Q ss_pred             ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEE
Q psy6446          11 EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL   89 (134)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (134)
                      +.+..+.++...++++.|.| .+.+|++++.|+.|++|++.......+.+.+|..+|..++|+++|..+++++-|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            34566676666777799999 88999999999999999998866677889999999999999999999999999999999


Q ss_pred             EecCCCceeEEEecCCCCeEEEEccCC-cEEEEe-cCCeEEEEeCCC
Q psy6446          90 WDVSASAEVQKLEFGAVPNSLEISRDG-TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        90 ~d~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~~t  134 (134)
                      ||+.+|++...+..+..+.|+.|+|++ +.+++| .|+.|+.||+++
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            999999999999999999999999998 555554 789999999975

>KOG0295|consensus

Probab=99.91  E-value=7.7e-23  Score=122.55  Aligned_cols=131  Identities=22%  Similarity=0.383  Sum_probs=115.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccC---------------CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATD---------------SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG   65 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~   65 (134)
                      ++++|-+.++++...++.++.++-|++|.|.               ++.+.+++.|+.|++||+.++.++ .++.+|...
T Consensus       258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnw  336 (406)
T KOG0295|consen  258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNW  336 (406)
T ss_pred             eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE-EEEecccce
Confidence            5899999999888888866777777888764               258999999999999999998765 578999999


Q ss_pred             EeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          66 IKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      |..++|+|.|++|+++..|+++++||+++.++...+. ++.-+.++.|+.+-.++++| -|..+++|.-
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999999999999998887 56778999999999999887 4899999964

>KOG0302|consensus

Probab=99.91  E-value=9.6e-23  Score=122.77  Aligned_cols=131  Identities=21%  Similarity=0.362  Sum_probs=102.6

Q ss_pred             eeEeecCCCceee---EEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELH---SFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~---~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      |++|...+|.-..   .+. |...+-. +.|+| ....|++++.||.|+|||++.+.. .....+.|.+.|+.++|+.+.
T Consensus       236 I~lw~~~~g~W~vd~~Pf~gH~~SVED-LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~  314 (440)
T KOG0302|consen  236 IHLWEPSTGSWKVDQRPFTGHTKSVED-LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE  314 (440)
T ss_pred             eEeeeeccCceeecCccccccccchhh-hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc
Confidence            6777777665321   222 4444555 99999 567899999999999999998732 333458899999999999988


Q ss_pred             CEEEEeeCCCcEEEEecCC---CceeEEEe-cCCCCeEEEEccCCc-EEE-EecCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSA---SAEVQKLE-FGAVPNSLEISRDGT-TIT-VTHGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~---~~~~~~~~-~~~~v~~~~~~~~~~-~l~-~~~~~~i~i~d~~  133 (134)
                      .+|++|+.||+++|||+++   ++++..+. |..+|+++.|+|... .++ +|.|.+|.+||+.
T Consensus       315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            8999999999999999986   45666776 689999999999753 444 4578999999984

>KOG0283|consensus

Probab=99.90  E-value=2.9e-23  Score=134.43  Aligned_cols=115  Identities=19%  Similarity=0.282  Sum_probs=98.1

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCC--------------------------------C-------------
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK--------------------------------P-------------   52 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~--------------------------------~-------------   52 (134)
                      .+...+.++.|++||++||+|+.|+.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5566777799999999999999999999998754                                0             


Q ss_pred             --------------CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccC-Cc
Q psy6446          53 --------------DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD-GT  117 (134)
Q Consensus        53 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~-~~  117 (134)
                                    ..+...+.||.+.|.++.|+. .++|++++.|.++++|++....++..+.|...|+|++|+|. .+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence                          001124678999999999995 56899999999999999999999999999999999999994 57


Q ss_pred             EEEEe-cCCeEEEEeCC
Q psy6446         118 TITVT-HGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~-~~~~i~i~d~~  133 (134)
                      |+++| -|+.++||++.
T Consensus       424 yFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSIS  440 (712)
T ss_pred             cEeecccccceEEeecC
Confidence            78776 59999999873

>KOG0275|consensus

Probab=99.90  E-value=1.7e-24  Score=128.86  Aligned_cols=133  Identities=20%  Similarity=0.380  Sum_probs=117.7

Q ss_pred             eeEeecCCCceeeEEe--------eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQ--------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      |.+||..+|+..+.++        -....+.|+.|+.|...+++|+.||.|++|.+.++.++.+.-++|...|+++.|+.
T Consensus       237 iEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr  316 (508)
T KOG0275|consen  237 IEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR  316 (508)
T ss_pred             eeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence            6799999998766553        12345556999999999999999999999999999988777779999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      |+..+++++.|.++++.-+..|++++.+. |.+.|+...|.++|..+++ ++||+|++|+.+|
T Consensus       317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            99999999999999999999999999887 6788999999999988876 4799999999875

>KOG0269|consensus

Probab=99.90  E-value=2.1e-23  Score=134.63  Aligned_cols=133  Identities=17%  Similarity=0.295  Sum_probs=112.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||++..+-..++......+.-+.|+| .+..|+++...|.+.+||++........+.+|.++|.++.|+|++.+|+
T Consensus       157 ~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lA  236 (839)
T KOG0269|consen  157 TVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLA  236 (839)
T ss_pred             eEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceee
Confidence            589999998888888875444444499999 7889999999999999999998877777899999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCce--eEEEecCCCCeEEEEccCCcE-EEEe---cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAE--VQKLEFGAVPNSLEISRDGTT-ITVT---HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~-l~~~---~~~~i~i~d~~  133 (134)
                      ||++|+.++|||..+++.  ..++....++.+++|-|..++ |+++   .|..|+|||++
T Consensus       237 TGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  237 TGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             ecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            999999999999986654  344456789999999999865 4443   46899999986

>KOG0273|consensus

Probab=99.90  E-value=1.5e-22  Score=124.71  Aligned_cols=132  Identities=18%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCC---------cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDS---------YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~   70 (134)
                      |++||+.........++ |...+++ +.|+|.|         ..+++++.|+.|++||+..+.++ ..+..|+.+|.+++
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t-~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-~~f~kH~~pVysva  459 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYT-IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-HTLMKHQEPVYSVA  459 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceee-EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee-EeeccCCCceEEEE
Confidence            68999988888888887 6667777 9999865         46899999999999999987765 56788999999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |+|+++++++|+.||.|.+|++++++..+.......|..++|+.+|..+.++ +|+.+.+.|++.
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLRK  524 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence            9999999999999999999999999999999888889999999999888876 789999999863

>KOG0265|consensus

Probab=99.90  E-value=1.3e-22  Score=118.99  Aligned_cols=120  Identities=23%  Similarity=0.404  Sum_probs=101.9

Q ss_pred             eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC
Q psy6446          14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   93 (134)
                      ..+.+++..+..+.|+|+|..|++|+.|..|.+|+.....+-...+++|.+.|..+.|++|+..+++++.|.+++.||.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            34456666666699999999999999999999999776555556788999999999999999999999999999999999


Q ss_pred             CCceeEEEe-cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          94 ASAEVQKLE-FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        94 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +|++.+.++ +...++.+..+.-|..++++  .|+++++||++
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            999999887 45667777766667777764  46999999997

>KOG0284|consensus

Probab=99.90  E-value=1.3e-23  Score=127.49  Aligned_cols=132  Identities=17%  Similarity=0.233  Sum_probs=116.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|+|||....+....+.+++.-+.++.|+|...++++|+.|+.|++||.+++.++. .+.+|+..|..+.|+|++++|++
T Consensus       203 ~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~-tlh~HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  203 TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA-TLHGHKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             eEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh-hhhhccceEEEEEEcCCCCeeEE
Confidence            58999999888888889777777779999999999999999999999999988764 67899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCc-EEEE-ecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITV-THGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~-~~~~~i~i~d~~  133 (134)
                      ++.|..++++|+++.+.++.+. |...+.++.|+|-.. ++++ |.||.|..|.+.
T Consensus       282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            9999999999999888888777 788999999999664 4444 478999999763

>KOG0310|consensus

Probab=99.90  E-value=7.6e-23  Score=126.14  Aligned_cols=131  Identities=23%  Similarity=0.335  Sum_probs=112.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-CCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-NTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~   79 (134)
                      |+|||..+...+..++.+...+....|+| ++..|++|+.|+.+++||+.+... ...+.+|...|.+.+++|. +..++
T Consensus        92 V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   92 VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE
Confidence            68899776666777775556666699999 556778888999999999998653 4567899999999999995 55788


Q ss_pred             EeeCCCcEEEEecCCC-ceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +|+.||.|++||++.. ..+..+.|+.+|..+.+-|.|..+++++...|++||+-
T Consensus       171 tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             ecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence            9999999999999987 78889999999999999999999999999999999985

>KOG1407|consensus

Probab=99.90  E-value=4.8e-22  Score=114.87  Aligned_cols=132  Identities=17%  Similarity=0.276  Sum_probs=112.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--------------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--------------------------   54 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--------------------------   54 (134)
                      +|++||.+++++...+.....-+. +.|+|+|+++++++.|..|.+.|.++.+.                          
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence            589999999999999998777888 99999999999999999999998864211                          


Q ss_pred             --------------CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEE
Q psy6446          55 --------------EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI  119 (134)
Q Consensus        55 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  119 (134)
                                    +...+++|.....++.|+|+|+++++|+.|..+.+||+...-+.+.+. ++-+|+.++|+.+|++|
T Consensus       167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML  246 (313)
T ss_pred             CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence                          122456788889999999999999999999999999999888888776 58899999999999999


Q ss_pred             EEe-cCCeEEEEeCC
Q psy6446         120 TVT-HGSCVTFLDAN  133 (134)
Q Consensus       120 ~~~-~~~~i~i~d~~  133 (134)
                      +++ .|..|-|=+++
T Consensus       247 ASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVE  261 (313)
T ss_pred             eccCccceEEeEecc
Confidence            986 56666554443

>KOG0296|consensus

Probab=99.90  E-value=1.2e-21  Score=117.45  Aligned_cols=132  Identities=15%  Similarity=0.269  Sum_probs=113.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      ..+|+..++.....+.+++.-+.++.|+.+|.+|++|..+|.|++|+..++.... .+......+.=+.|+|.+..|+.|
T Consensus        88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~-~~~~e~~dieWl~WHp~a~illAG  166 (399)
T KOG0296|consen   88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW-KLDQEVEDIEWLKWHPRAHILLAG  166 (399)
T ss_pred             EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE-EeecccCceEEEEecccccEEEee
Confidence            3699999999888888666666669999999999999999999999999876543 344456778899999999999999


Q ss_pred             eCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +.||.+.+|.+.+....+.+. +..++++-.|.|+|+.++++ .||+|++||++|
T Consensus       167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt  221 (399)
T KOG0296|consen  167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT  221 (399)
T ss_pred             cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence            999999999999866555555 67889999999999999987 679999999875

>KOG0283|consensus

Probab=99.90  E-value=4.4e-22  Score=129.03  Aligned_cols=130  Identities=17%  Similarity=0.276  Sum_probs=109.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      ||++|++...+++..|.|.+.+.+ ++|+| |.++|++|+.|+.++||++...+ . .....-..-|++++|.|||+..+
T Consensus       391 TVRLWh~~~~~CL~~F~HndfVTc-VaFnPvDDryFiSGSLD~KvRiWsI~d~~-V-v~W~Dl~~lITAvcy~PdGk~av  467 (712)
T KOG0283|consen  391 TVRLWHPGRKECLKVFSHNDFVTC-VAFNPVDDRYFISGSLDGKVRLWSISDKK-V-VDWNDLRDLITAVCYSPDGKGAV  467 (712)
T ss_pred             cEEeecCCCcceeeEEecCCeeEE-EEecccCCCcEeecccccceEEeecCcCe-e-EeehhhhhhheeEEeccCCceEE
Confidence            799999999999999999877666 99999 89999999999999999997633 2 23344457899999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec---------CCCCeEEEEccCC--cEEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF---------GAVPNSLEISRDG--TTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~l~~~~~~~i~i~d~~  133 (134)
                      .|+.+|..++|+....+.......         ...|+++.|.|..  +.|+++.|.+|+|||.+
T Consensus       468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence            999999999999988776655441         2369999999865  37788899999999984

>KOG0264|consensus

Probab=99.90  E-value=3.8e-22  Score=121.94  Aligned_cols=133  Identities=20%  Similarity=0.274  Sum_probs=105.1

Q ss_pred             CeeEeecCCCc-------eeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCC-CCCCCeEEeCCCCCEeEEEE
Q psy6446           1 MGTVWDAVSGE-------ELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNK-PDAEPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~v~~~~~   71 (134)
                      +|++||+....       +...+.++..++.-++|++ +...|++++.|+.+.|||+++ ..++.....+|.+++.+++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            57899986432       2445566666776699999 667889999999999999996 33445567899999999999


Q ss_pred             ee-CCCEEEEeeCCCcEEEEecCCCce-eEEEe-cCCCCeEEEEccCCcEE-EEe-cCCeEEEEeCC
Q psy6446          72 FK-NNTRLISCAEDKTVRLWDVSASAE-VQKLE-FGAVPNSLEISRDGTTI-TVT-HGSCVTFLDAN  133 (134)
Q Consensus        72 ~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l-~~~-~~~~i~i~d~~  133 (134)
                      +| ++..|++++.|++|.+||+++.+. +..+. |...|.++.|+|+...+ +++ .|+.+.+||+.
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            99 667788999999999999997543 33333 67899999999988554 443 68999999985

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=3.5e-21  Score=124.79  Aligned_cols=131  Identities=11%  Similarity=0.137  Sum_probs=99.8

Q ss_pred             CeeEeecCCCc--------eeeEEeeCCCceeeEEEccCCcE-EEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE
Q psy6446           1 MGTVWDAVSGE--------ELHSFQHPHIVKSSVHFATDSYR-LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~   71 (134)
                      +|++||+.++.        ++..+.++...+.+++|+|++.. |++++.|+.|++||++++... ..+. |...|.+++|
T Consensus        98 tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-~~i~-~~~~V~Slsw  175 (568)
T PTZ00420         98 TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-FQIN-MPKKLSSLKW  175 (568)
T ss_pred             eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCcEEEEEE
Confidence            58999997642        33456655566666999998875 578899999999999986543 2333 5678999999


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCe-----EEEEccCCcEEEE-ecC----CeEEEEeCC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPN-----SLEISRDGTTITV-THG----SCVTFLDAN  133 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~-----~~~~~~~~~~l~~-~~~----~~i~i~d~~  133 (134)
                      +|+|..|++++.|+.|++||+++++.+..+. |.+.+.     ...|++++.++++ |.+    ++|++||++
T Consensus       176 spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        176 NIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             CCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            9999999999999999999999998887776 333332     2345688887776 444    479999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.90  E-value=2.9e-21  Score=116.11  Aligned_cols=132  Identities=26%  Similarity=0.422  Sum_probs=113.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .|.+||+.+++....+..+...+.++.|+|++.++++++.++.+++||++..... ..+..|...+.++.|+|+++.+++
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~  194 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLS  194 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEE
Confidence            3789999988888888844445556999999889998888999999999875543 456788889999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEE-ecCCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      ++.++.+.+||++.++....+ .+...+.++.|+|++.+++++. ++.|.+||++
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            999999999999988888877 4677899999999988888876 8999999986

>KOG0282|consensus

Probab=99.90  E-value=1.4e-22  Score=125.02  Aligned_cols=132  Identities=25%  Similarity=0.485  Sum_probs=108.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+++|+++..+....... |+.|+|++ +.+++|+.|+.|+.||+++++ ..+.+..|-+.|..+.|-++++.++
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFI  358 (503)
T ss_pred             eeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEe
Confidence            47899999999999987655444 59999987 889999999999999999976 4567888999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEE--------------------------------Ee-----------------cCCCCeEE
Q psy6446          80 SCAEDKTVRLWDVSASAEVQK--------------------------------LE-----------------FGAVPNSL  110 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~--------------------------------~~-----------------~~~~v~~~  110 (134)
                      +.+.|+.+++|+.+.+-.+..                                +.                 ..+.-..+
T Consensus       359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v  438 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV  438 (503)
T ss_pred             eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence            999999999998765332111                                00                 01234578


Q ss_pred             EEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446         111 EISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       111 ~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .|||||.+|++| ++|.+.+||.+|
T Consensus       439 ~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  439 DFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             EEcCCCCeEEeecCCccEEEeechh
Confidence            999999999998 689999999864

>KOG0292|consensus

Probab=99.90  E-value=1e-22  Score=133.73  Aligned_cols=131  Identities=18%  Similarity=0.341  Sum_probs=117.9

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||.+=+.++..|. |.+++.. +.|+|++.++++|+.|-.|++|+..+..++ ..+.+|-.-|..+.|++...+++
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRg-v~FH~~qplFVSGGDDykIkVWnYk~rrcl-ftL~GHlDYVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRG-VDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-FTLLGHLDYVRTVFFHHEYPWIL  109 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccce-eeecCCCCeEEecCCccEEEEEecccceeh-hhhccccceeEEeeccCCCceEE
Confidence            48899999999999998 5555555 999999999999999999999999986655 57889999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.|-+|+||+..+++++..+. |...|.|..|+|....++++ -|.+|++||+.
T Consensus       110 SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            99999999999999999999987 67889999999988888875 69999999984

>KOG0269|consensus

Probab=99.89  E-value=5.5e-23  Score=132.76  Aligned_cols=131  Identities=20%  Similarity=0.368  Sum_probs=109.3

Q ss_pred             eeEeecCC---CceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCC
Q psy6446           2 GTVWDAVS---GEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNT   76 (134)
Q Consensus         2 i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   76 (134)
                      |.+||+..   .+.+..|..+.+.+.++.|++ ..++|++|+.||.|++||++..+.. ..+.+....|..++|+| .+.
T Consensus       112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~-~t~~~nSESiRDV~fsp~~~~  190 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK-STFRSNSESIRDVKFSPGYGN  190 (839)
T ss_pred             EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc-ccccccchhhhceeeccCCCc
Confidence            78999976   455666776666666699998 6788999999999999999986654 45677888999999999 678


Q ss_pred             EEEEeeCCCcEEEEecCCCce-eEEE-ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAE-VQKL-EFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++++...|.+++||++.... ...+ .|.++|.|+.|+|++.+|++| .|+.|+|||+.
T Consensus       191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            899999999999999997643 3333 378999999999999999986 68999999975

>KOG0281|consensus

Probab=99.89  E-value=3e-23  Score=124.38  Aligned_cols=127  Identities=22%  Similarity=0.421  Sum_probs=101.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      ||+|||+++|+++.++-|+...+--+.|+  ..++++++.|..+.+||+..+..  ....+.+|...|+.++|  +.+++
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyI  333 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI  333 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceE
Confidence            68999999999999887554444338886  56899999999999999987542  22456799999999999  56799


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++.|.+|++|++.+++.++++. |...|.|+.+.  ++++++| +|.+|++||++
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc
Confidence            999999999999999999888876 56667777654  6777776 57888888875

>KOG0277|consensus

Probab=99.89  E-value=2.4e-22  Score=115.75  Aligned_cols=132  Identities=20%  Similarity=0.306  Sum_probs=110.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l   78 (134)
                      ||++||..-++-+.++.++...+-...|+| .++.++++|.|+.+++||++...... .+..|..++.++.|+. +.+.+
T Consensus       128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl  206 (311)
T KOG0277|consen  128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVL  206 (311)
T ss_pred             ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEE
Confidence            689999999999999997766665599999 78899999999999999999876554 4788999999999998 77888


Q ss_pred             EEeeCCCcEEEEecCCCc-eeEEEe-cCCCCeEEEEccCCc-EEEE-ecCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASA-EVQKLE-FGAVPNSLEISRDGT-TITV-THGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~-~l~~-~~~~~i~i~d~~  133 (134)
                      +|++.|+.|+.||+++-+ ++..+. ++-.|+.++|+|... .|++ +.|-++++||.+
T Consensus       207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            999999999999998754 344443 567899999999875 4444 368999999975

>KOG0294|consensus

Probab=99.89  E-value=1e-21  Score=115.98  Aligned_cols=132  Identities=14%  Similarity=0.215  Sum_probs=115.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCc--EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSY--RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|+|||+++.+.+..+-.+...++++.|.++..  .|++|+.||.|.+|+..... ....+++|.+.|+.++.+|.++..
T Consensus        64 tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~KLA  142 (362)
T KOG0294|consen   64 TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGKLA  142 (362)
T ss_pred             cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCceE
Confidence            689999999998888876677777799998665  89999999999999998864 456789999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++.+.|+.+++||+-.|+.-..+........+.|+|.|.+++.+....|-+|.++
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d  197 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLD  197 (362)
T ss_pred             EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecc
Confidence            9999999999999999998887777766677999999988888777788888764

>KOG0313|consensus

Probab=99.89  E-value=2.9e-22  Score=120.64  Aligned_cols=130  Identities=22%  Similarity=0.363  Sum_probs=109.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCCCEeEEEEee-CCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSSGIKHVQFFK-NNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~   77 (134)
                      ||+.||+.++..+..+.......+ +..+|..++|++|+.|..+++||.+++.  .....+.+|.+.|.++.|+| +...
T Consensus       282 TIk~WDletg~~~~~~~~~ksl~~-i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~  360 (423)
T KOG0313|consen  282 TIKVWDLETGGLKSTLTTNKSLNC-ISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ  360 (423)
T ss_pred             eEEEEEeecccceeeeecCcceeE-eecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE
Confidence            689999999999988887766655 9999999999999999999999999864  34456789999999999999 5566


Q ss_pred             EEEeeCCCcEEEEecCCCc-eeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeC
Q psy6446          78 LISCAEDKTVRLWDVSASA-EVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~  132 (134)
                      |++++.|+++++||+++.+ ++..+. |...|.++.|... ..+++ |.|.+|+++..
T Consensus       361 ~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  361 LVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence            8899999999999999877 777665 6788999999855 45555 57999999864

>KOG0285|consensus

Probab=99.89  E-value=1.5e-22  Score=121.50  Aligned_cols=131  Identities=18%  Similarity=0.291  Sum_probs=115.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|+-||++..+.++.+.++-..+.|++.+|.-..|++|+.|..+++||+++... ...+.+|...|.++.+.|-...+++
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEE
Confidence            478899999999999986666666699999999999999999999999999654 4678999999999999998888999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ++.|++|++||++.++....+. +...+++++.+|....+++++...|+-|++
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~  347 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL  347 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence            9999999999999999888777 467899999999988888877778888876

>KOG0277|consensus

Probab=99.89  E-value=4.3e-22  Score=114.77  Aligned_cols=132  Identities=24%  Similarity=0.360  Sum_probs=106.6

Q ss_pred             CeeEeecC-CCceeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCC
Q psy6446           1 MGTVWDAV-SGEELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNT   76 (134)
Q Consensus         1 ~i~v~d~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   76 (134)
                      ++++||+. ..+++..++ |...+.+ +.|++ +...++++|-|++|++|+..-+.. ..++.+|..-|.+..|+| ..+
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~S-vdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYS-VDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPN  161 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEE-eccccccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCC
Confidence            57899965 446788888 5555555 99999 677788899999999999987554 467999999999999999 678


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEE-EEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI-TVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~-~~~~i~i~d~~t  134 (134)
                      .+++++.|+.+++||++.......+. +..++.++.|+.-...+ +++ .|+.|+.||+++
T Consensus       162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            89999999999999998643333344 66799999999876554 454 589999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.1e-20  Score=113.55  Aligned_cols=132  Identities=30%  Similarity=0.448  Sum_probs=112.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .+++||+.+++....+..+...+..+.|+|+++.+++++.++.+++|++..... ...+..|...+.++.|+|+++.+++
T Consensus        32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~  110 (289)
T cd00200          32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSPDGRILSS  110 (289)
T ss_pred             EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-eEEEeccCCcEEEEEEcCCCCEEEE
Confidence            378999998888777775555554599999999999999999999999987543 4566788889999999999888888


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      ++.++.+.+||+.+++....+. +...+.+++|+|++.+++++. ++.|.+||++
T Consensus       111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200         111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             ecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            8889999999999888777776 567899999999999988886 8999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=9.1e-21  Score=128.50  Aligned_cols=131  Identities=24%  Similarity=0.396  Sum_probs=108.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEc-cCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFA-TDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+.++..+..+.+...+. ++.|+ +++..|++|+.||.|++||++........+.+|...|..+.|. ++..++
T Consensus       599 ~v~iWd~~~~~~~~~~~~~~~v~-~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv  676 (793)
T PLN00181        599 SVKLWSINQGVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV  676 (793)
T ss_pred             EEEEEECCCCcEEEEEecCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE
Confidence            48999999999988888655444 48885 4799999999999999999987654455678899999999997 788999


Q ss_pred             EeeCCCcEEEEecCCC------ceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSAS------AEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.|+.|++||++.+      ..+..+. +...+..++|+|++.+++++ .|+.|++|+..
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            9999999999999743      3444444 46678899999999999986 68999999963

>KOG0316|consensus

Probab=99.89  E-value=1.7e-21  Score=111.38  Aligned_cols=129  Identities=22%  Similarity=0.386  Sum_probs=110.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +.+||+.+|+.++.+.++...+++++|+.+...+++|+.|..+++||-+... .+.+.+......|.++..+  +..+++
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence            6899999999999999777777779999999999999999999999988743 4556677778889998884  678999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+.||+++.||++.|+..... ...+|++++|+++++..+++ -++++++.|-+
T Consensus       161 GS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             eccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence            999999999999988765432 47899999999999987765 78999998854

>KOG0292|consensus

Probab=99.89  E-value=9.1e-22  Score=129.37  Aligned_cols=133  Identities=16%  Similarity=0.270  Sum_probs=110.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC---------------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD---------------------------   53 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~---------------------------   53 (134)
                      ||+||++++++++..+.+++..+-|..|+|....++++|.|.+|++||+..-.                           
T Consensus       116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            79999999999999999777777779999999999999999999999985210                           


Q ss_pred             -CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee--EEE-ecCCCCeEEEEccCCcEEEE-ecCCeEE
Q psy6446          54 -AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV--QKL-EFGAVPNSLEISRDGTTITV-THGSCVT  128 (134)
Q Consensus        54 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~-~~~~~i~  128 (134)
                       .....+.+|...|+-++|+|.-..+++|+.|+.|++|.+...+.-  .+. .|.+.|.++-|+|....+++ +.|+.|+
T Consensus       196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir  275 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR  275 (1202)
T ss_pred             eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence             011246789999999999999999999999999999988654321  122 26788999999999988887 5789999


Q ss_pred             EEeCC
Q psy6446         129 FLDAN  133 (134)
Q Consensus       129 i~d~~  133 (134)
                      +||+.
T Consensus       276 VwDm~  280 (1202)
T KOG0292|consen  276 VWDMT  280 (1202)
T ss_pred             EEecc
Confidence            99986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=5.2e-21  Score=129.66  Aligned_cols=130  Identities=17%  Similarity=0.297  Sum_probs=104.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l   78 (134)
                      +|++||+.+++.+..+..+...+.+++|+| ++.+|++|+.|+.|++||++++... ..+.. ...+.++.|++ ++..+
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-~~~~~-~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-GTIKT-KANICCVQFPSESGRSL  633 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-EEEec-CCCeEEEEEeCCCCCEE
Confidence            489999999999988885555566699997 7899999999999999999876543 34443 36789999964 78999


Q ss_pred             EEeeCCCcEEEEecCCCc-eeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASA-EVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      ++|+.|+.|++||+++.+ ....+. +...|.++.|. ++.++++ +.|+.|++||++
T Consensus       634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            999999999999998765 333333 66789999997 5556655 578999999985

>KOG0289|consensus

Probab=99.89  E-value=3.3e-21  Score=117.99  Aligned_cols=128  Identities=24%  Similarity=0.424  Sum_probs=108.0

Q ss_pred             eEeecCCCceeeEEeeC--CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           3 TVWDAVSGEELHSFQHP--HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ...|.+++..+....+.  .-.+++.+|+|||..|.+|..|+.+++||+..+... ..+.+|.++|..++|+.+|-+|++
T Consensus       328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~-a~Fpght~~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV-AKFPGHTGPVKAISFSENGYWLAT  406 (506)
T ss_pred             EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc-ccCCCCCCceeEEEeccCceEEEE
Confidence            45678888887777653  344667999999999999999999999999987744 568899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +..|+.|++||++..+...++...  .++.++.|++.|.+|+++ .+=.|++++
T Consensus       407 ~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  407 AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            999999999999998888887754  469999999999999886 345565554

>KOG0289|consensus

Probab=99.89  E-value=1.6e-21  Score=119.38  Aligned_cols=133  Identities=17%  Similarity=0.257  Sum_probs=109.9

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l   78 (134)
                      .|+||............ |...+.. +..+|.|.+|++++.|+...+.|++++........ ...-.+++.+|+|||..+
T Consensus       284 ~i~vws~~~~s~~~~~~~h~~~V~~-ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif  362 (506)
T KOG0289|consen  284 IIRVWSVPLSSEPTSSRPHEEPVTG-LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF  362 (506)
T ss_pred             eEEeeccccccCcccccccccccee-eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence            37889887666655555 5555555 99999999999999999999999998765533222 123458999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+|..|+.+++||+..+.....++ |.++|..++|+.+|.+|+++ .|+.|++||++.
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence            999999999999999988887777 68899999999999999986 668899999973

>KOG0268|consensus

Probab=99.88  E-value=9.9e-23  Score=122.26  Aligned_cols=132  Identities=16%  Similarity=0.238  Sum_probs=115.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|.+||++.+.+++.+-..-.... ++|+|++-.+.+|+.|..++.+|++....+.....+|.+.|.+++|+|.|+.+++
T Consensus       211 sIvLyD~R~~~Pl~KVi~~mRTN~-IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVILTMRTNT-ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             ceEEEecccCCccceeeeeccccc-eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence            578999999999988876555555 9999988889999999999999999988888889999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      |+.|.+|+||....+........  -..|.|++|+.|.+++++|+ |+.|++|-.+
T Consensus       290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            99999999999987765444332  35789999999999999986 5999999653

>KOG0318|consensus

Probab=99.88  E-value=1.1e-20  Score=118.10  Aligned_cols=120  Identities=25%  Similarity=0.392  Sum_probs=99.0

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe---CCCCCEeEEEEeeCCCEEEEeeCCCcEEE
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR---GHSSGIKHVQFFKNNTRLISCAEDKTVRL   89 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (134)
                      ...++.+...+.|+.|+|||.++++.+.||.+.+||=.+++.. ..+.   +|.+.|.+++|+||++.+++++.|.++++
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI  261 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-EEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence            3344555567778999999999999999999999998887644 3344   89999999999999999999999999999


Q ss_pred             EecCCCceeEEEe--------------------------------------------cCCCCeEEEEccCCcEEEEe-cC
Q psy6446          90 WDVSASAEVQKLE--------------------------------------------FGAVPNSLEISRDGTTITVT-HG  124 (134)
Q Consensus        90 ~d~~~~~~~~~~~--------------------------------------------~~~~v~~~~~~~~~~~l~~~-~~  124 (134)
                      ||..+.++.+++.                                            |...|+++..+|++.++.++ .|
T Consensus       262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD  341 (603)
T KOG0318|consen  262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD  341 (603)
T ss_pred             EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence            9998876654443                                            12267889999999988876 68


Q ss_pred             CeEEEEeCC
Q psy6446         125 SCVTFLDAN  133 (134)
Q Consensus       125 ~~i~i~d~~  133 (134)
                      |.|.-||..
T Consensus       342 G~I~~W~~~  350 (603)
T KOG0318|consen  342 GHINSWDSG  350 (603)
T ss_pred             ceEEEEecC
Confidence            999999875

>KOG0645|consensus

Probab=99.88  E-value=1.1e-20  Score=109.66  Aligned_cols=131  Identities=22%  Similarity=0.352  Sum_probs=107.8

Q ss_pred             eeEeecCCC--ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSG--EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +.||.-..+  +++..+++++..+.|++|+++|++||++++|..|-+|.+.....  ....+.+|...|..+.|+|....
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            456654433  57888997777777799999999999999999999999986442  34567899999999999999999


Q ss_pred             EEEeeCCCcEEEEecC---CCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          78 LISCAEDKTVRLWDVS---ASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      |++++.|++|++|+-.   ...+.+++. +...+.+++|+|.|..|+++ .|++++||-.
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            9999999999999866   234566665 45689999999999888876 5799999963

>KOG0265|consensus

Probab=99.88  E-value=2.5e-21  Score=113.68  Aligned_cols=131  Identities=19%  Similarity=0.365  Sum_probs=111.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +++.||+++|+.++.++.+...++++..+.-| .++.+++.|+++++||+++.... ..+ ..+-+++++.|..++..+.
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-~t~-~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-KTF-ENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-hcc-ccceeEEEEEeccccccee
Confidence            58999999999999999888888877755544 56678899999999999986544 232 3456899999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +|+-|+.|++||++.......+. +...|..+..+|+|.++.+ +.|.++++||++
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence            99999999999999998888887 6789999999999999887 479999999986

>KOG1446|consensus

Probab=99.88  E-value=4.7e-20  Score=108.76  Aligned_cols=132  Identities=11%  Similarity=0.160  Sum_probs=106.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC-CCCCeEEe---CCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP-DAEPTVYR---GHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~   76 (134)
                      +|++||++..++...+.-....+  ++|+|+|-.+|++.....|++||++.- +.+...+.   +...+.+.+.|+|||+
T Consensus       123 tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK  200 (311)
T KOG1446|consen  123 TVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK  200 (311)
T ss_pred             eEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence            68999999888877776444433  889999999999988889999999874 33333333   3356789999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEecC---C-CCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEFG---A-VPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~-~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .++.+...+.+.+.|--+|..+..+...   . .....+|.||++++++| .||+|++|++++
T Consensus       201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            9999999999999999999988777632   2 22578899999999998 469999999874

>KOG0278|consensus

Probab=99.88  E-value=9.1e-21  Score=109.36  Aligned_cols=129  Identities=15%  Similarity=0.251  Sum_probs=109.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +||+||.+++..++.++....+.+ +..+++|.+|.++. .+.|.+||..+-..+ ..+ .-...|.+...+|+...+++
T Consensus       166 tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~-gssV~Fwdaksf~~l-Ks~-k~P~nV~SASL~P~k~~fVa  241 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAY-GSSVKFWDAKSFGLL-KSY-KMPCNVESASLHPKKEFFVA  241 (334)
T ss_pred             ceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEec-CceeEEeccccccce-eec-cCccccccccccCCCceEEe
Confidence            689999999999999998888877 99999998776654 468999999875533 222 24567899999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEE--ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |++|..++.||..++..+..+  .+.++|.|+.|+|+|...++| .||+|++|.+.
T Consensus       242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            999999999999999988775  367999999999999998887 68999999864

>KOG0267|consensus

Probab=99.88  E-value=8.7e-23  Score=131.20  Aligned_cols=132  Identities=22%  Similarity=0.376  Sum_probs=117.2

Q ss_pred             CeeEeecCCCceeeEEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+..++.++++.+ ...+.. +.|+|.+.+.+.|+.|..+++||.+...+. ..+.+|...+..+.|+|+|++++
T Consensus        93 tiK~wDleeAk~vrtLtgh~~~~~s-v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-~~~~s~~~vv~~l~lsP~Gr~v~  170 (825)
T KOG0267|consen   93 TIKVWDLEEAKIVRTLTGHLLNITS-VDFHPYGEFFASGSTDTDLKIWDIRKKGCS-HTYKSHTRVVDVLRLSPDGRWVA  170 (825)
T ss_pred             ceeeeehhhhhhhhhhhccccCcce-eeeccceEEeccccccccceehhhhccCce-eeecCCcceeEEEeecCCCceee
Confidence            689999999999998884 445555 999999999999999999999999965544 56888999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .++.|..+++||...|+....+. +...+..+.|+|..-+++.| .|+++++||++|
T Consensus       171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            99999999999999999998888 78889999999998777765 689999999974

>KOG1446|consensus

Probab=99.87  E-value=3.3e-20  Score=109.42  Aligned_cols=132  Identities=20%  Similarity=0.345  Sum_probs=113.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC--CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN--DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      ++++||..+++.++++..++..+..+.|....+.++.++.  |..|+..++.+.+.+ +-+.||...|..++.+|-+..+
T Consensus        37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~F  115 (311)
T KOG1446|consen   37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTF  115 (311)
T ss_pred             eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeE
Confidence            5899999999999999988777777889887778877776  889999999986654 6789999999999999988999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecC-CeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~~t  134 (134)
                      ++++.|++|++||++..++.-.+.... -...+|+|+|-+++++.+ ..|++||+++
T Consensus       116 lS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen  116 LSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            999999999999999888877665443 346889999999998754 5999999874

>KOG0316|consensus

Probab=99.87  E-value=7.7e-21  Score=108.77  Aligned_cols=121  Identities=20%  Similarity=0.375  Sum_probs=108.4

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      +..+......+.++.|+-+|++.++++.|..+++|+...+. ...++.+|..+|..++.+.|...+++++.|..+.+||.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-eeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45566666667779999999999999999999999988765 45789999999999999999999999999999999999


Q ss_pred             CCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          93 SASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        93 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+|+..+.+. |..+|+.++|+.+...++++ .|..+++||.++
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            9999999998 67899999999999888886 699999999864

>KOG0772|consensus

Probab=99.87  E-value=2.7e-21  Score=120.70  Aligned_cols=134  Identities=19%  Similarity=0.284  Sum_probs=101.6

Q ss_pred             CeeEeecCCCc-eeeEEe-----eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCC--CEeEEE
Q psy6446           1 MGTVWDAVSGE-ELHSFQ-----HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSS--GIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~--~v~~~~   70 (134)
                      |+||||+...+ .+..++     +.....+.++|+++|+.||+|+.||.|.+|+.....  .......+|..  .|+++.
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~  371 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS  371 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence            68999997544 344444     222334559999999999999999999999976532  12233457776  899999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEEe----cCCCCeEEEEccCCcEEEEec-------CCeEEEEeCCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKLE----FGAVPNSLEISRDGTTITVTH-------GSCVTFLDANS  134 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-------~~~i~i~d~~t  134 (134)
                      |+++|++|++-+.|+++++||+++.+......    ...+-..++|+|+.++|++|.       .|.+.+||..|
T Consensus       372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            99999999999999999999999865433222    345667899999999998762       26899988653

>KOG0647|consensus

Probab=99.87  E-value=1.1e-20  Score=111.25  Aligned_cols=117  Identities=21%  Similarity=0.326  Sum_probs=99.7

Q ss_pred             eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCC-CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCC
Q psy6446          18 HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKP-DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        18 ~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   95 (134)
                      .++..+++++||| ...+++++|.||.||+|+++.. .........|.++|.+++|+.+|..+++++.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            5566677799999 6667779999999999999873 3333455679999999999999999999999999999999999


Q ss_pred             ceeEEEecCCCCeEEEEccCCc--EEEEe-cCCeEEEEeCCC
Q psy6446          96 AEVQKLEFGAVPNSLEISRDGT--TITVT-HGSCVTFLDANS  134 (134)
Q Consensus        96 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~~~~i~i~d~~t  134 (134)
                      +....-.|..+|.++.|-+...  .|++| .|.+|+.||++.
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            8887777999999999987665  67776 589999999874

>KOG0274|consensus

Probab=99.86  E-value=4.5e-20  Score=119.22  Aligned_cols=128  Identities=23%  Similarity=0.420  Sum_probs=109.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |+++||..+|++...+.++...+.++..  ....+.+|+.|.+|++|++.++..+ ..+.+|.++|.++..+  +..+++
T Consensus       272 t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l-~l~~~h~~~V~~v~~~--~~~lvs  346 (537)
T KOG0274|consen  272 TERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACL-NLLRGHTGPVNCVQLD--EPLLVS  346 (537)
T ss_pred             cEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceE-EEeccccccEEEEEec--CCEEEE
Confidence            6899999999999999977777665655  4567888999999999999986654 5677799999999996  889999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      |+.|++|++||+.+++++..+. |...|.++.+.+. ..++. +.|+.|++||+++
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence            9999999999999999999887 6788999988876 45554 5799999999874

>KOG0305|consensus

Probab=99.86  E-value=5.7e-21  Score=120.50  Aligned_cols=132  Identities=17%  Similarity=0.277  Sum_probs=113.1

Q ss_pred             CeeEeecCCCceeeEEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|.|||..+.+.+..+.+ +..-+.+++|+  +..+.+|+.|+.|..+|++........+.+|...|+.++|++|+++++
T Consensus       240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA  317 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA  317 (484)
T ss_pred             eEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec
Confidence            478999999988888885 77777779997  778999999999999999987766555789999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCC-cEEEEe---cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG-TTITVT---HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~---~~~~i~i~d~~t  134 (134)
                      +|+.|+.+.|||.....++..+. |...|..++|+|-. ..|++|   .|+.|++||+.+
T Consensus       318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence            99999999999997766666554 78999999999976 466664   379999999863

>KOG1407|consensus

Probab=99.86  E-value=4.3e-20  Score=106.92  Aligned_cols=130  Identities=17%  Similarity=0.251  Sum_probs=110.1

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.|....+-+++..++ |+...++ +.|+|+|++|++|+.|-.+.+||++..-+. +.+.-+.-+|..+.|+.+|++|++
T Consensus       171 v~ILsypsLkpv~si~AH~snCic-I~f~p~GryfA~GsADAlvSLWD~~ELiC~-R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCIC-IEFDPDGRYFATGSADALVSLWDVDELICE-RCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             EEEEeccccccccccccCCcceEE-EEECCCCceEeeccccceeeccChhHhhhh-eeeccccCceEEEEeccCcceeec
Confidence            4555566677888888 5545554 999999999999999999999999986554 567778899999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c---C------CeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H---G------SCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~------~~i~i~d~~  133 (134)
                      +++|..|-|=++.+|..+..+++.++...++|+|...+|+.. .   +      |.+++|-+.
T Consensus       249 aSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            999999999999999999999999999999999999888743 2   2      577777543

>KOG0973|consensus

Probab=99.86  E-value=1.7e-20  Score=124.60  Aligned_cols=121  Identities=18%  Similarity=0.323  Sum_probs=103.2

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC------C----C-------CCCeEEeCCCCCEeEEEEeeCC
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK------P----D-------AEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~------~----~-------~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +.+...+...++|+.|+|||++||+|+.|+.|.+|....      .    .       .....+.+|.+.|..+.|+|++
T Consensus        62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD  141 (942)
T ss_pred             heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence            344445566677799999999999999999999999873      0    0       1223578999999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      .++++++.|++|.+||.++.+....+. |.+.|-.+.|+|-|+|+++ +.|++|++|++.
T Consensus       142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            999999999999999999998888777 6889999999999999998 578999999853

>KOG0281|consensus

Probab=99.86  E-value=1.2e-21  Score=117.63  Aligned_cols=127  Identities=21%  Similarity=0.393  Sum_probs=105.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ||++|++.+++.+.++.++...+.|+.+  .++++++|+.|.+|++||+..+.++ +++.+|..-|.++.|  |.+.+++
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvRciRF--d~krIVS  415 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVRCIRF--DNKRIVS  415 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhhheee--cCceeee
Confidence            6899999999999999988888877776  5899999999999999999998765 578999999999999  6889999


Q ss_pred             eeCCCcEEEEecCCCceeEE---------E-ecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQK---------L-EFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~---------~-~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |+.||+|++||+..+...+.         + .+.+.|..+.|+.- +.+.++.|.+|.+||..
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDFL  477 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEcC
Confidence            99999999999987543321         1 24568888988632 44455689999999973

>KOG0639|consensus

Probab=99.86  E-value=8.1e-22  Score=123.00  Aligned_cols=131  Identities=22%  Similarity=0.342  Sum_probs=112.3

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      ++.|||+.+..+....+  .......+++.+||.+..+++..||+|.|||+.... ..+.+.+|...+.++..++||..|
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtkl  566 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKL  566 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCcee
Confidence            57899998766543333  444555569999999999999999999999999854 456789999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+|+-|++++-||+++++.+......+.|.++..+|++.+++.| .++.+.+...
T Consensus       567 WTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  567 WTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence            99999999999999999998888888999999999999999998 4677777543

>KOG0305|consensus

Probab=99.86  E-value=2.2e-20  Score=117.94  Aligned_cols=131  Identities=18%  Similarity=0.302  Sum_probs=110.1

Q ss_pred             eeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           2 GTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      |..+|++..+.... +.++...++.+.|+++++++++|+.|+.+.|||..... +...+..|...|..++|+| ....|+
T Consensus       282 I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLA  360 (484)
T KOG0305|consen  282 ILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLA  360 (484)
T ss_pred             EEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceE
Confidence            66788887766544 66566666669999999999999999999999996644 4567889999999999999 566777


Q ss_pred             Eee--CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe---cCCeEEEEeCC
Q psy6446          80 SCA--EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT---HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~--~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~i~d~~  133 (134)
                      +|+  .|+.|++||..+++.+......+.|..+.|++..+-++++   .++.|.||+..
T Consensus       361 sGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p  419 (484)
T KOG0305|consen  361 TGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP  419 (484)
T ss_pred             EcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence            754  5899999999999999999999999999999999777764   45899999874

>KOG0772|consensus

Probab=99.86  E-value=8.9e-21  Score=118.45  Aligned_cols=116  Identities=17%  Similarity=0.289  Sum_probs=91.8

Q ss_pred             eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEe-----CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe
Q psy6446          18 HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYR-----GHSSGIKHVQFFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        18 ~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      ++-..++|..|+| +...+++++.||++++|+++..+.....++     +.+-+++..+|+++++.++++..||.|.+|+
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD  345 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence            4455567799999 556789999999999999988665544443     2344689999999999999999999999999


Q ss_pred             cCCCce--eEEEe--c--CCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          92 VSASAE--VQKLE--F--GAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        92 ~~~~~~--~~~~~--~--~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      ......  .....  |  ...|+|++|+++|++|++ +.|+++++||++
T Consensus       346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            754322  22222  3  358999999999999987 789999999986

>KOG2110|consensus

Probab=99.86  E-value=1.1e-19  Score=109.27  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             CeeEeecCCCceeeEEee--CCCc-eeeEEEccCCcEEEEe--cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQH--PHIV-KSSVHFATDSYRLATG--SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +|+|||+.+.+.+++++.  +++. +.++.+++.+.+++.-  ...|.|.+||..+-.. ...+..|.+.+.+++|+++|
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs~~G  185 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFSPDG  185 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEecCCceeEEEECCCC
Confidence            489999999999999872  2322 3335555556677753  3368999999987554 45778999999999999999


Q ss_pred             CEEEEeeCCCc-EEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          76 TRLISCAEDKT-VRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      ..|+|++..|+ |+++.+.+|+.+..+..+   ..|.+++|+|++++|++++ .++|+++-++
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            99999999997 899999999999999853   5678999999999999865 5999999875

>KOG1539|consensus

Probab=99.86  E-value=6.7e-20  Score=119.63  Aligned_cols=130  Identities=21%  Similarity=0.309  Sum_probs=112.3

Q ss_pred             CeeEeecCCCceeeEE----eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC----------------------
Q psy6446           1 MGTVWDAVSGEELHSF----QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA----------------------   54 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~----------------------   54 (134)
                      +|.+||+++|-....|    .|...+.. ++...-++.+++++.+|.+.+||+.+...                      
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~g-la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~  549 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTG-LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL  549 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeE-EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence            4789999999999888    25555555 99988888999999999999999875320                      


Q ss_pred             ------------------CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCC
Q psy6446          55 ------------------EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG  116 (134)
Q Consensus        55 ------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~  116 (134)
                                        ..+.+.+|.+.+++++|||||++|++++.|++|++||+.++.++..+..+.+...+.|+|+|
T Consensus       550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng  629 (910)
T KOG1539|consen  550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG  629 (910)
T ss_pred             hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC
Confidence                              11235689999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEe-cC-CeEEEEe
Q psy6446         117 TTITVT-HG-SCVTFLD  131 (134)
Q Consensus       117 ~~l~~~-~~-~~i~i~d  131 (134)
                      .+|++. .| ..|.+|-
T Consensus       630 D~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  630 DFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CEEEEEEecCceEEEEE
Confidence            999987 44 7888885

>KOG4283|consensus

Probab=99.86  E-value=3.7e-20  Score=109.10  Aligned_cols=131  Identities=20%  Similarity=0.333  Sum_probs=108.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc---CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT---DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +++|||..+-+....|+-++.+.+ -+++|   ...++++|..+-.|++.|+..+... ..+.+|.+.|.++.|+|...+
T Consensus       125 tlKVWDtnTlQ~a~~F~me~~VYs-hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-H~LsGHr~~vlaV~Wsp~~e~  202 (397)
T KOG4283|consen  125 TLKVWDTNTLQEAVDFKMEGKVYS-HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-HTLSGHRDGVLAVEWSPSSEW  202 (397)
T ss_pred             eEEEeecccceeeEEeecCceeeh-hhcChhhhcceEEEEecCCCcEEEEeccCCcce-eeeccccCceEEEEeccCcee
Confidence            589999999999989988888877 88888   3457888999999999999997654 678999999999999997776


Q ss_pred             -EEEeeCCCcEEEEecCCC-ceeEEEe---------------cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          78 -LISCAEDKTVRLWDVSAS-AEVQKLE---------------FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        78 -l~~~~~d~~i~~~d~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                       |++++.||.+++||++.. .++..+.               +.+.+.+++|..++.+++. +.|..+++|+.+
T Consensus       203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence             578999999999999754 3333332               3467889999999998886 578999999975

>KOG0310|consensus

Probab=99.85  E-value=1.6e-19  Score=111.68  Aligned_cols=128  Identities=20%  Similarity=0.302  Sum_probs=112.4

Q ss_pred             CeeEeecCCC-ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSG-EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+++. ..+..+.|..++-. +.+-|.|..|++++. +.+++||+.++.+.......|...|+|+++..++..|+
T Consensus       177 ~vrl~DtR~~~~~v~elnhg~pVe~-vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELNHGCPVES-VLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             eEEEEEeccCCceeEEecCCCceee-EEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence            5899999976 77888888888877 888899999998875 57999999987766666666999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEE
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFL  130 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~  130 (134)
                      +++-|+.+++||+.+-+.+..+..+++|.+++.+|+++.+++| ++|.+.+-
T Consensus       255 S~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            9999999999999999999999999999999999999999987 56766553

>KOG0318|consensus

Probab=99.85  E-value=1.8e-19  Score=112.71  Aligned_cols=127  Identities=20%  Similarity=0.311  Sum_probs=106.4

Q ss_pred             cCCCceeeEEeeCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC
Q psy6446           7 AVSGEELHSFQHPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK   85 (134)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   85 (134)
                      +.+|.-+-.+.++...+.++.|.|. .-++++|+.|+.|.+|.=.. -+....+..|..-|.++.|+|||.++++.+.||
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg  212 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG  212 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence            3457777778877777877999994 45689999999999997432 223345678999999999999999999999999


Q ss_pred             cEEEEecCCCceeEEEe----cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          86 TVRLWDVSASAEVQKLE----FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      .+.+||-.+++.+..+.    |.+.|.+++|+||+..+++ +.|.+++|||+.+
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            99999999999988886    6788999999999987776 5799999999864

>KOG0646|consensus

Probab=99.85  E-value=7.8e-20  Score=112.60  Aligned_cols=133  Identities=19%  Similarity=0.304  Sum_probs=115.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC--------CCCCCeEEeCCCCCEeEEEEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK--------PDAEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~--------~~~~~~~~~~~~~~v~~~~~~   72 (134)
                      .|++|.+.+|+.+..+..+...++|+.|+-||.+|++|+.||.|.+|++..        ...+...+..|.-+|+++...
T Consensus       104 ~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig  183 (476)
T KOG0646|consen  104 NLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIG  183 (476)
T ss_pred             cEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEec
Confidence            378999999999999887777777899999999999999999999998642        123445678999999999987


Q ss_pred             eC--CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          73 KN--NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +.  ..++++++.|.++++||+..+..+..+..+..+.+++.+|-++.+.+| .+|.|.+.++.
T Consensus       184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             CCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence            64  468999999999999999999999999999999999999999888887 67999887764

>KOG0300|consensus

Probab=99.85  E-value=8.4e-20  Score=108.81  Aligned_cols=132  Identities=21%  Similarity=0.437  Sum_probs=114.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |..+||+++|+++..+.++....+-+.-+|..+++++++.|...++||++..-.....+.+|...|++..|..+ ..+++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVS  373 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVS  373 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceee
Confidence            34689999999999999666666558888999999999999999999999766666789999999999999854 45789


Q ss_pred             eeCCCcEEEEecCCC-ceeEEEecCCCCeEEEEccCCcEEEEecC-CeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~~  133 (134)
                      ++.|.+|++||+++. .++.++...++++.++.+..++.++.-.| ..|++||+.
T Consensus       374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            999999999999875 46778888999999999998889999765 899999985

>KOG0308|consensus

Probab=99.85  E-value=4.3e-20  Score=117.89  Aligned_cols=133  Identities=20%  Similarity=0.340  Sum_probs=110.9

Q ss_pred             CeeEeecCCC--ceeeEEeeCCCceeeEEE-ccCCcEEEEecCCCeEEEEECCCCCC---------CCeEE-eCCCCCEe
Q psy6446           1 MGTVWDAVSG--EELHSFQHPHIVKSSVHF-ATDSYRLATGSNDKNIRIYDLNKPDA---------EPTVY-RGHSSGIK   67 (134)
Q Consensus         1 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~v~i~~~~~~~~---------~~~~~-~~~~~~v~   67 (134)
                      ||++|+...+  -+..++..+...+.|++. .++...+++|+.|+.|.+||++++..         ....+ .++...|.
T Consensus        96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            6899999877  567778755556666998 77888999999999999999997632         11112 27888999


Q ss_pred             EEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          68 HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +++.++.+..+++|+-++.+++||.++++.+..+. |...|..+..++||..+++ ++||+|++||+.
T Consensus       176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            99999999999999999999999999998887776 6788999999999987776 579999999985

>KOG0647|consensus

Probab=99.85  E-value=1.6e-19  Score=106.36  Aligned_cols=129  Identities=18%  Similarity=0.340  Sum_probs=104.3

Q ss_pred             CeeEeecCC-CceeeE--EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC--
Q psy6446           1 MGTVWDAVS-GEELHS--FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN--   75 (134)
Q Consensus         1 ~i~v~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--   75 (134)
                      +||+|+++. |..+-+  ..+..+++. ++|+.+|..+++|+.|+.+++||+.+++  ......|.++|..+.|-+..  
T Consensus        51 tVR~wevq~~g~~~~ka~~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvkt~~wv~~~~~  127 (347)
T KOG0647|consen   51 TVRIWEVQNSGQLVPKAQQSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVKTCHWVPGMNY  127 (347)
T ss_pred             ceEEEEEecCCcccchhhhccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCC--eeeeeecccceeEEEEecCCCc
Confidence            689999985 454433  236666666 9999999999999999999999999874  34567899999999998754  


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.|+||+.|.+|+.||++...++.++..+..+.++..-.. ..+++..+..|.+|+++
T Consensus       128 ~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  128 QCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAERHIAVYNLE  184 (347)
T ss_pred             ceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCCcEEEEEcC
Confidence            4899999999999999999999999988888877765322 33344578999999985

>KOG0293|consensus

Probab=99.84  E-value=2.8e-20  Score=113.61  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=101.2

Q ss_pred             EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          15 SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      .+..+...+..+.|+++|++||+++.|.+..+|++.....  +..++.+|..+|..+.|+||.++|++|+.+..+.+||.
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            3343444555599999999999999999999998765433  34567899999999999999999999999999999999


Q ss_pred             CCCceeEEEecC--CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          93 SASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .+|.....++..  ..+.+.+|.|||..+++| .|+.+..||+.
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            999988888754  778999999999888876 68999999975

>KOG0275|consensus

Probab=99.84  E-value=1.3e-20  Score=112.56  Aligned_cols=132  Identities=21%  Similarity=0.348  Sum_probs=112.9

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      .|++|-+.+|.+++.|+ .+...++|+.|+.|+..+++++.|..+++.-+..++.+ ..+++|..-|+...|.++|..++
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L-KEfrGHsSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL-KEFRGHSSYVNEATFTDDGHHII  364 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH-HHhcCccccccceEEcCCCCeEE
Confidence            37899999999999998 45555666999999999999999999999999998765 56899999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec---CCCCeEEEEccCC-c-EEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDG-T-TITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~-~-~l~~~~~~~i~i~d~~  133 (134)
                      +++.||++++|+..+.++..+++.   +.+|.++..-|.+ . ++++...+++.+-++.
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            999999999999999999888873   5678888887765 3 4445567888887763

>KOG0640|consensus

Probab=99.84  E-value=1.2e-20  Score=111.84  Aligned_cols=133  Identities=20%  Similarity=0.353  Sum_probs=108.0

Q ss_pred             CeeEeecCCCceeeE---EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe--EEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHS---FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT--VYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~   75 (134)
                      +|+++|.......+.   ++....+ .++.|+|.|.+|++|.....+++||+++.++...  .-..|.+.|+++.+++.+
T Consensus       195 tvKlFDfsK~saKrA~K~~qd~~~v-rsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  195 TVKLFDFSKTSAKRAFKVFQDTEPV-RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG  273 (430)
T ss_pred             eEEEEecccHHHHHHHHHhhcccee-eeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence            467788765433332   3333444 4499999999999999999999999998654322  234688999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEe--c-CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLE--F-GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +..++++.||.|++||--.++++.++.  | +..|.+..|..+|++++++ .|..+++|.+-|
T Consensus       274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            999999999999999999999998886  2 5789999999999999975 689999998753

>KOG0643|consensus

Probab=99.84  E-value=4.7e-19  Score=103.05  Aligned_cols=117  Identities=16%  Similarity=0.276  Sum_probs=104.0

Q ss_pred             EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCC
Q psy6446          16 FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   95 (134)
                      ++++++.++-+.++.+|.+|++++.|..+.+|--.+++.+ -.+.+|.+.|.+++..-+.+.+++|+.|.++++||+.+|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl-Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL-GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee-eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            4455555555999999999999999999999998777765 579999999999999999999999999999999999999


Q ss_pred             ceeEEEecCCCCeEEEEccCCcEEEEec------CCeEEEEeCC
Q psy6446          96 AEVQKLEFGAVPNSLEISRDGTTITVTH------GSCVTFLDAN  133 (134)
Q Consensus        96 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~~~i~i~d~~  133 (134)
                      +++..++.+.+|..+.|+++|.+++.+.      .+.|.++|++
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~  128 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR  128 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence            9999999999999999999998877653      2689999886

>KOG0640|consensus

Probab=99.83  E-value=5e-20  Score=109.29  Aligned_cols=117  Identities=23%  Similarity=0.334  Sum_probs=96.8

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCC-----------------CCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-----------------PDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .++.+..+.+|++||.++++|+.|-.|++.|...                 ..+..+.+-.|..+|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            4455566699999999999999999999999861                 01233456678899999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeE---EEecCCCCeEEEEccCCcEEEEecC-CeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQ---KLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~~t  134 (134)
                      ++.|+++++||+......+   .+....++.+++|+|.|.+++++.| ..+++||++|
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence            9999999999998654433   3335678999999999999999977 7999999875

>KOG0306|consensus

Probab=99.83  E-value=1.7e-19  Score=116.92  Aligned_cols=131  Identities=24%  Similarity=0.382  Sum_probs=114.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |+.||-+.+-+.-..+.++.-++.|+..+||++.+++||.|.+|++|-++-+.+. ..+.+|...|.++.|.|+...+.+
T Consensus       531 TVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt  609 (888)
T KOG0306|consen  531 TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFT  609 (888)
T ss_pred             eEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEE
Confidence            5778888887776666655555555999999999999999999999999988765 457789999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ++.|+.++-||-.....++.+. |...++|++.+|+|.+++++ .|..|++|..
T Consensus       610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            9999999999998888888887 67899999999999999986 6899999974

>KOG1273|consensus

Probab=99.83  E-value=1e-19  Score=107.96  Aligned_cols=100  Identities=17%  Similarity=0.374  Sum_probs=90.0

Q ss_pred             eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC
Q psy6446          14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   93 (134)
                      .++++..  ..|+.|++.|.+|++|+.||.+-|||+.+.. +.+++.+|..+|++++|+++|+.|++++.|..+.+||+.
T Consensus        19 ~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   19 HTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             eeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            3444444  4559999999999999999999999999854 567889999999999999999999999999999999999


Q ss_pred             CCceeEEEecCCCCeEEEEccCC
Q psy6446          94 ASAEVQKLEFGAVPNSLEISRDG  116 (134)
Q Consensus        94 ~~~~~~~~~~~~~v~~~~~~~~~  116 (134)
                      .|.+...+...++|....|+|..
T Consensus        96 ~gs~l~rirf~spv~~~q~hp~k  118 (405)
T KOG1273|consen   96 KGSPLKRIRFDSPVWGAQWHPRK  118 (405)
T ss_pred             CCCceeEEEccCccceeeecccc
Confidence            99999999999999999999965

>KOG0274|consensus

Probab=99.83  E-value=1.2e-18  Score=112.79  Aligned_cols=129  Identities=21%  Similarity=0.362  Sum_probs=111.5

Q ss_pred             CeeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||..++..+.. +.++...+.++++..-+..+++|+.|.++++||..++.+. ..+.+|.+.+.++..  ....++
T Consensus       229 tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~-~~l~gh~stv~~~~~--~~~~~~  305 (537)
T KOG0274|consen  229 TLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT-HSLQGHTSSVRCLTI--DPFLLV  305 (537)
T ss_pred             eeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE-EEecCCCceEEEEEc--cCceEe
Confidence            468999999999887 8877777777999877899999999999999999988765 578899999999887  456778


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      +|+.|.+|++|++.+++.+..+. +..+|.++..+  +.++++ +.|+.|.+||+.+
T Consensus       306 sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  306 SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             eccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            88999999999999999999999 89999999988  566665 4789999999853

>KOG0296|consensus

Probab=99.83  E-value=2.2e-18  Score=103.74  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=103.9

Q ss_pred             eeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe
Q psy6446          13 LHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        13 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      +..|. |...++. ++.+|+.+++++|+.|...++|++.++. ....+.+|+..|.++.|+.++.+|+||+.+|.|++|+
T Consensus        57 ~~tF~~H~~svFa-vsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   57 LVTFDKHTDSVFA-VSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eeehhhcCCceEE-EEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            44555 5555555 9999999999999999999999999977 4567899999999999999999999999999999999


Q ss_pred             cCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          92 VSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        92 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..++.....+. .-..+.=++|+|-+..+++| .||.+.+|.+.
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            99999888876 34667789999999988887 68999999875

>KOG0302|consensus

Probab=99.82  E-value=3.2e-19  Score=107.86  Aligned_cols=124  Identities=18%  Similarity=0.348  Sum_probs=97.7

Q ss_pred             CceeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEEeeC-CCEEEEeeCC
Q psy6446          10 GEELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKN-NTRLISCAED   84 (134)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   84 (134)
                      .+++.++. |...... +.||| ....|++|..-+.|++|...++.-  -...+.+|...|-.++|+|. ...+++|+.|
T Consensus       201 ~~Pl~t~~ghk~EGy~-LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D  279 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYG-LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD  279 (440)
T ss_pred             cCceEEecccCcccee-eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence            34677777 5555555 99999 334588888889999999877531  12346679999999999994 5678899999


Q ss_pred             CcEEEEecCCC---ceeEEEecCCCCeEEEEccCCcEEEEec-CCeEEEEeCCC
Q psy6446          85 KTVRLWDVSAS---AEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~t  134 (134)
                      ++|+|||++.+   .++..-.+.+.|+-+.|+..-.+|++|. ||+++|||++.
T Consensus       280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~  333 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ  333 (440)
T ss_pred             ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh
Confidence            99999999988   4555555788999999999888888875 59999999974

>KOG0288|consensus

Probab=99.82  E-value=8.3e-19  Score=106.98  Aligned_cols=128  Identities=20%  Similarity=0.318  Sum_probs=107.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC----CCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH----SSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~   76 (134)
                      +|+.||.++..+....+..+.+.+ +..++++..+++++.|..+.+.|+++.. +...+...    ....+.+.|||++.
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg~vtS-l~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGGRVTS-LDLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             ceEEEeccCCceeeEeecCcceee-EeeccCCeEEeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCCCc
Confidence            489999999999999987766655 9999999999999999999999999854 23333321    23488999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEe-cCCeEEEE
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVT-HGSCVTFL  130 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~i~  130 (134)
                      |+++|+.||.|+||++.++++...+..   ...|.+++|+|.|..++++ .++.+.+|
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999999999888874   2369999999999888865 57888888

>KOG0303|consensus

Probab=99.82  E-value=1.7e-19  Score=109.60  Aligned_cols=116  Identities=22%  Similarity=0.415  Sum_probs=101.0

Q ss_pred             eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEE
Q psy6446          18 HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRL   89 (134)
Q Consensus        18 ~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~   89 (134)
                      |...+.. ++|+| +.+.|++||.|..|.+|++....      .+...+.+|...|..++|+| -.+.|++++.|++|.+
T Consensus        80 Ht~~vLD-i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   80 HTAPVLD-IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             ccccccc-cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            4455555 99999 77889999999999999986532      34557889999999999999 4678899999999999


Q ss_pred             EecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          90 WDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        90 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ||+.+++.+..+.|...|.+++|+.||.+++++ .|..|+|||.++
T Consensus       159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            999999999999999999999999999998874 799999999874

>KOG1274|consensus

Probab=99.82  E-value=1.2e-18  Score=114.84  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=108.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC--------CCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG--------HSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~~~~v~~~~~~~   73 (134)
                      |++-++.+......++++...+.++.|+|++++|++.+.||.|++|++.++... .++.+        ....+..++|+|
T Consensus       120 vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~k~n~~~~s~i~~~~aW~P  198 (933)
T KOG1274|consen  120 VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS-KTLTGVDKDNEFILSRICTRLAWHP  198 (933)
T ss_pred             EEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh-hhcccCCccccccccceeeeeeecC
Confidence            567777777788888866666666999999999999999999999999875432 22211        145678999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++..++....|+.|++|+..++.....+..   .+.+..+.|+|+|+||+++ -+|.|.|||.+|
T Consensus       199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999999999999888877762   4458999999999999987 689999999874

>KOG0306|consensus

Probab=99.82  E-value=4.8e-19  Score=114.86  Aligned_cols=130  Identities=21%  Similarity=0.327  Sum_probs=114.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|+||+..++....++.++...++++.|+..|..|++|+.|+.|.+||+-... -...+.+|...|+.+-|..+.+++++
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl~rL~GHkd~iT~~~F~~~~~~lvS  166 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GLFRLRGHKDSITQALFLNGDSFLVS  166 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-eeEEeecchHHHhHHhccCCCeEEEE
Confidence            48999999998888998777778779999999999999999999999997633 34568999999999999988999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      .+.|+.|++||+.+..+..+.- +...+..+++++ ...++++.|+.+.+|++
T Consensus       167 ~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  167 VSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWEL  218 (888)
T ss_pred             eccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEe
Confidence            9999999999999999988765 678999999997 34555668999999987

>KOG0294|consensus

Probab=99.82  E-value=9.8e-19  Score=103.63  Aligned_cols=118  Identities=20%  Similarity=0.333  Sum_probs=99.7

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC--EEEEeeCCCcEEEE
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT--RLISCAEDKTVRLW   90 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~   90 (134)
                      +..+..+...++++++  ++.++++|+.|-+|+|||++...+. ..+..|.+.|+++.|.+...  .|++|+.||.|.+|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-cceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            4455555556666888  5899999999999999999986655 45678999999999998664  89999999999999


Q ss_pred             ecCCCceeEEEe-cCCCCeEEEEccCCcEEE-EecCCeEEEEeCC
Q psy6446          91 DVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VTHGSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~i~i~d~~  133 (134)
                      +.....++..+. |...|+.++.+|.+++.+ ++.|+.+++||+-
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            999998888887 567799999999998755 5789999999973

>KOG0270|consensus

Probab=99.82  E-value=5.1e-18  Score=104.28  Aligned_cols=132  Identities=15%  Similarity=0.279  Sum_probs=108.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-CEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l   78 (134)
                      ||.+||+.+|++...+.+++..++++.|+| .+..|++|+.|++|.+.|.+.........+ -.+.|-.++|.|.. ..+
T Consensus       267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f  345 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSF  345 (463)
T ss_pred             eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeE
Confidence            689999999999999997777777799999 678899999999999999996444433333 45789999999955 556


Q ss_pred             EEeeCCCcEEEEecCCC-ceeEEEe-cCCCCeEEEEccCCcEEE-E-ecCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISRDGTTIT-V-THGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~-~-~~~~~i~i~d~~  133 (134)
                      +++..||.++-+|+|.. +++.++. |..+|.++++++....++ + +.++.+++|++.
T Consensus       346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            77889999999999975 7787777 789999999998775444 4 368999999874

>KOG0313|consensus

Probab=99.81  E-value=1.1e-18  Score=105.52  Aligned_cols=133  Identities=17%  Similarity=0.275  Sum_probs=110.1

Q ss_pred             CeeEeecCCCcee----eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC------------------------
Q psy6446           1 MGTVWDAVSGEEL----HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP------------------------   52 (134)
Q Consensus         1 ~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~------------------------   52 (134)
                      ++++|-+..++..    +..+++...+.++...++|..+++|+.|..+.+|+..+.                        
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            4677877766542    233366677777999999999999999999999993210                        


Q ss_pred             CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          53 DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        53 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ..+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+..+....++..+|...++++| .|..|++||
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecC
Confidence            112345789999999999997 778899999999999999999999999999999999999999988886 689999999


Q ss_pred             CCC
Q psy6446         132 ANS  134 (134)
Q Consensus       132 ~~t  134 (134)
                      .++
T Consensus       329 PR~  331 (423)
T KOG0313|consen  329 PRT  331 (423)
T ss_pred             CCC
Confidence            874

>KOG0293|consensus

Probab=99.81  E-value=1e-18  Score=106.96  Aligned_cols=130  Identities=22%  Similarity=0.359  Sum_probs=109.9

Q ss_pred             eeEeecCCCceeeEEeeC-CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHP-HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~   79 (134)
                      +.+||+.+|.....+.+. +..+.+++|.|||..+++|+.|+.+..||++...  .....+. ...|.+++..+||++++
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEE
Confidence            679999999999988844 3444559999999999999999999999998633  2222222 25699999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +...|..+++++..+.........+.++.+.+.+.+++++++. .+..+++||++
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence            9999999999999887777677788999999999999999887 78999999985

>KOG0288|consensus

Probab=99.80  E-value=2e-18  Score=105.35  Aligned_cols=129  Identities=14%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ||++||+....+.+++-....... +..+  ...+++|..|+.|++||.+...... ....+ +.|+++..++++..+++
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnD-I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~g-g~vtSl~ls~~g~~lLs  358 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCND-IVCS--ISDVISGHFDKKVRFWDIRSADKTR-SVPLG-GRVTSLDLSMDGLELLS  358 (459)
T ss_pred             hhhhhhhhhhheeccccccccccc-eEec--ceeeeecccccceEEEeccCCceee-EeecC-cceeeEeeccCCeEEee
Confidence            578999999888877654433333 5544  5678899999999999999876543 33444 59999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEec-----CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|.++.+.|+++......+..     ....+.+.|||++.|+++| .||.|+||++.+
T Consensus       359 ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  359 SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence            99999999999998877766652     4567899999999999987 689999999864

>KOG0300|consensus

Probab=99.80  E-value=3e-19  Score=106.51  Aligned_cols=133  Identities=17%  Similarity=0.294  Sum_probs=114.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECC------CC----------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN------KP----------------------   52 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~------~~----------------------   52 (134)
                      |.+||.+++|+++.++.++.+.++++.|++.+.++++++.|+...||...      ..                      
T Consensus       171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~  250 (481)
T KOG0300|consen  171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT  250 (481)
T ss_pred             ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence            46899999999999999777777779999999999999999999999721      00                      


Q ss_pred             -----------CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEE
Q psy6446          53 -----------DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT  120 (134)
Q Consensus        53 -----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  120 (134)
                                 ..+...+.+|.+.|.+..|-..++.+++++.|.+..+||+.++..+..+. |+.+.+.++-+|..++++
T Consensus       251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence                       01223467899999999999999999999999999999999999998876 678888888899988888


Q ss_pred             Ee-cCCeEEEEeCC
Q psy6446         121 VT-HGSCVTFLDAN  133 (134)
Q Consensus       121 ~~-~~~~i~i~d~~  133 (134)
                      ++ .|.+.++||++
T Consensus       331 TsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFR  344 (481)
T ss_pred             EeccCceeEeccch
Confidence            75 68999999985

>KOG1036|consensus

Probab=99.80  E-value=7.4e-18  Score=99.47  Aligned_cols=128  Identities=23%  Similarity=0.361  Sum_probs=106.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ++++||.........+++..+... ++|.+ ...+++|+.||.|+.+|+.++...  .+..|..++.++.+++....+++
T Consensus        36 slrlYdv~~~~l~~~~~~~~plL~-c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIs  111 (323)
T KOG1036|consen   36 SLRLYDVPANSLKLKFKHGAPLLD-CAFAD-ESTIVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVIS  111 (323)
T ss_pred             cEEEEeccchhhhhheecCCceee-eeccC-CceEEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEE
Confidence            478999988877788888888887 88875 568999999999999999986543  46779999999999998899999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-EecCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VTHGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~i~d~~t  134 (134)
                      |+.|++|++||.+.......+.....|.++...  +..|+ .+.+..+.+||+++
T Consensus       112 gsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  112 GSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             cccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            999999999999986666666666788888765  44444 56899999999974

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.80  E-value=2.8e-17  Score=94.67  Aligned_cols=118  Identities=13%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             ceeeEEee-CCCceeeEEEccCCcEEEEe--cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC---C
Q psy6446          11 EELHSFQH-PHIVKSSVHFATDSYRLATG--SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE---D   84 (134)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d   84 (134)
                      .+...++. ....+..++|+|+|+.|++.  ..++.+.+||++. ...   ..-....+..+.|+|+|+++++++.   .
T Consensus        49 ~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i---~~~~~~~~n~i~wsP~G~~l~~~g~~n~~  124 (194)
T PF08662_consen   49 IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKI---FSFGTQPRNTISWSPDGRFLVLAGFGNLN  124 (194)
T ss_pred             CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEe---EeecCCCceEEEECCCCCEEEEEEccCCC
Confidence            34444442 22235559999999987654  4567999999973 222   2234567889999999999998864   3


Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--c-----CCeEEEEeCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--H-----GSCVTFLDAN  133 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-----~~~i~i~d~~  133 (134)
                      |.+.+||.++.+.+....+.. +..++|+|+|++++++  .     |+.++||+..
T Consensus       125 G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  125 GDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            679999999888887776554 6899999999999864  2     6889999864

>KOG1445|consensus

Probab=99.79  E-value=6.1e-19  Score=113.27  Aligned_cols=113  Identities=21%  Similarity=0.369  Sum_probs=97.1

Q ss_pred             CceeeEEEcc-CCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEec
Q psy6446          21 IVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        21 ~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~   92 (134)
                      .+.. +.|+| |...|++++.||.|++|.+..+.      .+...+.+|...|+.+.|+| ..+.|++++.|.+|++||+
T Consensus       629 ~vtD-l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  629 LVTD-LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             eeee-cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            3444 99999 88899999999999999987532      23456789999999999999 5678899999999999999


Q ss_pred             CCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          93 SASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        93 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                      ++.+....+. |...|..++|+|+|+.+++ +.||+|++|+.++
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            9988777665 6889999999999999986 7899999998763

>KOG0643|consensus

Probab=99.79  E-value=4e-18  Score=99.24  Aligned_cols=121  Identities=23%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             eeEeecC-------CCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAV-------SGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      |.++|++       +.++...+..+...+....|.|.+..|++|..||.|..||++++.........|...|+.++++++
T Consensus       122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence            5677776       456677776444555559999999999999999999999999987777777789999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  122 (134)
                      ..++++++.|.+.++||..+...++++....++++.+++|....++.+
T Consensus       202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vilg  249 (327)
T KOG0643|consen  202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILG  249 (327)
T ss_pred             cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEec
Confidence            999999999999999999999999999999999999999988777665

>KOG0639|consensus

Probab=99.79  E-value=1.5e-18  Score=108.64  Aligned_cols=132  Identities=20%  Similarity=0.242  Sum_probs=114.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-----------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-----------------------   57 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-----------------------   57 (134)
                      .|.|||+.+...+..|+++....+|+..+++|..|-+|+.|+.|+.||++++..+.+                       
T Consensus       532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             cEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec
Confidence            378999999999999997777777799999999999999999999999986432211                       


Q ss_pred             ----------------EEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE
Q psy6446          58 ----------------VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV  121 (134)
Q Consensus        58 ----------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  121 (134)
                                      .+.-|..-|.++.|.+-|+++++.+.|+.+..|....|..+...+..+.|.+..++-|.+++++
T Consensus       612 ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             ccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence                            2234667799999999999999999999999999999999999989999999999999999999


Q ss_pred             e-cCCeEEEEeC
Q psy6446         122 T-HGSCVTFLDA  132 (134)
Q Consensus       122 ~-~~~~i~i~d~  132 (134)
                      | +|....+|.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            7 5678888875

>KOG2111|consensus

Probab=99.79  E-value=6.3e-17  Score=96.10  Aligned_cols=132  Identities=18%  Similarity=0.241  Sum_probs=99.2

Q ss_pred             eeEeecC-CCceeeEEeeCCCceeeEEEcc--CCcEEEE-ecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAV-SGEELHSFQHPHIVKSSVHFAT--DSYRLAT-GSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      |+||... +-+.+..++........++..|  +...|+. |..-|.|++-|+..... ......+|...|.+++.+-+|.
T Consensus       115 I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt  194 (346)
T KOG2111|consen  115 IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT  194 (346)
T ss_pred             EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc
Confidence            5566665 4445555542111111233344  3334443 45579999999987554 3467889999999999999999


Q ss_pred             EEEEeeCCCc-EEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEecC-CeEEEEeCC
Q psy6446          77 RLISCAEDKT-VRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTHG-SCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~-i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~~  133 (134)
                      .++|++..|+ |+|||..++..+..+..   ...+.+++|+|+..++++++| |+++|+.++
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence            9999999997 89999999999999884   467999999999999999876 999999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.78  E-value=1.7e-16  Score=96.78  Aligned_cols=130  Identities=18%  Similarity=0.279  Sum_probs=100.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+.+++.+..+.+...+.. +.|+|+++.+ ++++.++.+++||..++... ..+..+ ..+..+.|+|+++.++
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~g~~l~   88 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCASDSDTIQVIDLATGEVI-GTLPSG-PDPELFALHPNGKILY   88 (300)
T ss_pred             EEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEECCCCeEEEEECCCCcEE-EeccCC-CCccEEEECCCCCEEE
Confidence            478999999999888886555555 9999999876 56778899999999876533 223333 3356789999998776


Q ss_pred             Ee-eCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec-C-CeEEEEeCC
Q psy6446          80 SC-AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-G-SCVTFLDAN  133 (134)
Q Consensus        80 ~~-~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~i~i~d~~  133 (134)
                      ++ +.++.+.+||+.+.+.+..+.....+.+++|+|++.+++++. + ..+..||.+
T Consensus        89 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        89 IANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             EEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence            54 568899999999888877776666678999999999888764 3 457777865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299|consensus

Probab=99.77  E-value=5.6e-18  Score=104.49  Aligned_cols=131  Identities=15%  Similarity=0.299  Sum_probs=109.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      |.|||..+.+.++.+.++...+.+++|-.....+++++.|+.+++|+++.... ..++.+|+..|.++.....++.+..|
T Consensus       226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~reR~vtVG  304 (479)
T KOG0299|consen  226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRERCVTVG  304 (479)
T ss_pred             EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcccceEEec
Confidence            57999999999999996666666699998888999999999999999987543 45678999999999998888888788


Q ss_pred             eCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.|+++++|++.....+-...+...+.|++|-.+..++..+.+|.|.+|++-
T Consensus       305 grDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  305 GRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             cccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence            8999999999965555544456778999999877666666678999999974

>KOG4378|consensus

Probab=99.77  E-value=2.9e-17  Score=102.85  Aligned_cols=132  Identities=15%  Similarity=0.239  Sum_probs=108.7

Q ss_pred             eEeecCCCceeeEEeeC-CCceeeEEEccCCcE-EEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           3 TVWDAVSGEELHSFQHP-HIVKSSVHFATDSYR-LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      -|-.+.++.....|.++ +..+.-+.++|..+. |.+++.+|.|.+||.....+.......|..+...++|+| +...|+
T Consensus       146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence            44555666666667654 444544899996655 567899999999999886666666778999999999999 567788


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +.+.|..|.+||++..+....+....+...++|.++|.+|++| ..|.|..||++.
T Consensus       226 sVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  226 SVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             EecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            9999999999999988888888889999999999999999998 569999999974

>KOG0308|consensus

Probab=99.77  E-value=4.2e-17  Score=104.54  Aligned_cols=131  Identities=21%  Similarity=0.312  Sum_probs=107.9

Q ss_pred             eeEeecCCCc--eeeEE--------e-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE
Q psy6446           2 GTVWDAVSGE--ELHSF--------Q-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~--~~~~~--------~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~   70 (134)
                      |.+||+.++.  .+..+        . ++...+-+++.++.|..|++|+..+.+++||.++.++. ..+.+|...|..+.
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-mkLrGHTdNVr~ll  220 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-MKLRGHTDNVRVLL  220 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-eeeeccccceEEEE
Confidence            7899999772  33322        1 33333444999999999999999999999999997765 45789999999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .++||..+++++.||+|++||+...+++.++. |...+.++..+|+=..+.+| .||.|..=|++
T Consensus       221 ~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  221 VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            99999999999999999999999999998887 56668999988887777776 68888876665

>KOG0270|consensus

Probab=99.77  E-value=1.6e-17  Score=102.11  Aligned_cols=109  Identities=18%  Similarity=0.316  Sum_probs=89.8

Q ss_pred             eEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEecCC-CceeEEE
Q psy6446          25 SVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDVSA-SAEVQKL  101 (134)
Q Consensus        25 ~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~  101 (134)
                      ++.|+. ..+.|++|+.|.+|.+||+.++++. ..+..|.+.|.+++|+| ....|++|+.|+++.+.|++. ...-..+
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcc-eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence            378877 4567899999999999999997754 56678999999999999 678899999999999999994 3444556


Q ss_pred             ecCCCCeEEEEccCCcE-EEEe-cCCeEEEEeCCC
Q psy6446         102 EFGAVPNSLEISRDGTT-ITVT-HGSCVTFLDANS  134 (134)
Q Consensus       102 ~~~~~v~~~~~~~~~~~-l~~~-~~~~i~i~d~~t  134 (134)
                      ...+.|..++|.|.... ++++ .||+++-+|+|.
T Consensus       327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~  361 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN  361 (463)
T ss_pred             EeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence            67889999999998754 3344 679999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=4.7e-16  Score=94.90  Aligned_cols=131  Identities=12%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCCCCeEEeCC-------CCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDAEPTVYRGH-------SSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~-------~~~v~~~~~~~   73 (134)
                      +.+||..+++.+..+........ +.|+|+++.++++ ..++.+++||+.+++... .+..+       ......+.|+|
T Consensus       139 ~~~~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~  216 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVLVDQRPRF-AEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLTK  216 (300)
T ss_pred             EEEEeCCCCeEEEEEEcCCCccE-EEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEECC
Confidence            45678887777665554444444 8999999988654 568999999998765332 22211       11235688999


Q ss_pred             CCCEEEE-eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCCC
Q psy6446          74 NNTRLIS-CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      +++.++. .+.++.+.+||..+++....+.....+.+++|+|+|.+|+++  .++.|.+||+++
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            9998654 455678999999988877766667788999999999988875  379999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063|consensus

Probab=99.77  E-value=1.6e-17  Score=106.92  Aligned_cols=132  Identities=12%  Similarity=0.283  Sum_probs=106.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe---EEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT---VYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++|+..+...++.++.+...++.++||||+++|++.++|..+.+|..........   ..+.|...|.+.+|+|++.++
T Consensus       554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF  633 (764)
T ss_pred             EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence            78999999888888886666666699999999999999999999999865433222   257899999999999999999


Q ss_pred             EEeeCCCcEEEEecCCC--ceeEE---EecCCCCeEEEEccC----C-cEEEEe-cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSAS--AEVQK---LEFGAVPNSLEISRD----G-TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~--~~~~~---~~~~~~v~~~~~~~~----~-~~l~~~-~~~~i~i~d~~  133 (134)
                      +|+++|..+++|.....  +.+..   +++..+++.+++.|-    . ..+++| ..|.|.+|...
T Consensus       634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  634 ATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99999999999998877  43333   346788888888762    2 256667 56999999843

>KOG0301|consensus

Probab=99.77  E-value=5e-17  Score=104.71  Aligned_cols=126  Identities=20%  Similarity=0.329  Sum_probs=106.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++|.-  ++.+++|.++...+..+++-++ ..|+++++||.|+.|++. +..+ ....+|..-+.+++..++++.+++
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-ge~l-~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-GEVL-LEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-Ccee-eeeeccceEEEEEEecCCCCeEEE
Confidence            5788874  7888899977777766888765 468899999999999994 4444 467899999999998889999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCC-CCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGA-VPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +++|+++++|+..  .+.+.+.++. .+.++++-++|..++.++||.|+||...
T Consensus       237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            9999999999865  7888888765 8999999999999999999999999754

>KOG0267|consensus

Probab=99.77  E-value=1.3e-18  Score=112.35  Aligned_cols=129  Identities=22%  Similarity=0.360  Sum_probs=108.7

Q ss_pred             EeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC
Q psy6446           4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE   83 (134)
Q Consensus         4 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (134)
                      +|....-..+..+.++...+.++.|+++..+|++|+.+|.|++||+...+.. +.+.+|...+..++|+|-+.+.+.++.
T Consensus        54 L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v-rtLtgh~~~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   54 LWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV-RTLTGHLLNITSVDFHPYGEFFASGST  132 (825)
T ss_pred             cccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-hhhhccccCcceeeeccceEEeccccc
Confidence            4555444455566766667777999999999999999999999999986644 578899999999999999999999999


Q ss_pred             CCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          84 DKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        84 d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |..+.+||++...+...+. +...+..+.|+|+|++++.+ .|..++|||..
T Consensus       133 dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  133 DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             cccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            9999999999777777666 55668899999999999987 46999999973

>KOG1034|consensus

Probab=99.77  E-value=7e-17  Score=96.42  Aligned_cols=114  Identities=24%  Similarity=0.389  Sum_probs=96.8

Q ss_pred             eCCCceeeEEEccC----CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-CCEEEEeeCCCcEEEEec
Q psy6446          18 HPHIVKSSVHFATD----SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-NTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        18 ~~~~~~~~~~~~~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~   92 (134)
                      +++...+ ++|+-+    ..++++|+.-|.|++.|+.+.+.. ..+.+|.+.|+.+.+.|+ .+++++++.|..|++|++
T Consensus        88 ~~Esfyt-csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYT-CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCcceEE-EEEEecCCCCCeeEEeecceeEEEEEecchhhhc-cceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            3344455 777653    347888889999999999886644 568899999999999995 578899999999999999


Q ss_pred             CCCceeEEEe----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          93 SASAEVQKLE----FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++..++..+.    |...|.++.|+++|.+++++ .|..|.+|++.
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            9999999886    57889999999999998875 79999999986

>KOG2096|consensus

Probab=99.77  E-value=4.2e-17  Score=97.26  Aligned_cols=132  Identities=20%  Similarity=0.363  Sum_probs=102.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC-------CCCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-------AEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-------~~~~~~~~~~~~v~~~~~~~   73 (134)
                      +|.+|++. |+.+..+.....-..-.+.+|+|+++++++.--.|++|.+--.+       .-...+++|...|..++|++
T Consensus       210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence            47899998 99998887444444448899999999999988899999863211       11235789999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCC----Cc---eeEEEe-----cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSA----SA---EVQKLE-----FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~----~~---~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.+.+++.+.||.+++||+.-    ++   .++...     ..+....+.++|+|..++.+....+++|..+
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se  360 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE  360 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence            999999999999999999752    11   122111     2345568999999999999988889988765

>KOG1188|consensus

Probab=99.76  E-value=2.9e-17  Score=98.28  Aligned_cols=133  Identities=17%  Similarity=0.336  Sum_probs=101.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCCCeE-EeCCC-CCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGHS-SGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~   76 (134)
                      +|++||..+++.+..++++...++-++|..  .+..+.+++.||.|++||++...+..+. ...++ .+..+++.+-+++
T Consensus        51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~  130 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN  130 (376)
T ss_pred             eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC
Confidence            589999999999999997666666688876  4677899999999999999986554433 33444 3556666665677


Q ss_pred             EEEEeeC----CCcEEEEecCCCce-eEEEe--cCCCCeEEEEccCC-cEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCAE----DKTVRLWDVSASAE-VQKLE--FGAVPNSLEISRDG-TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~----d~~i~~~d~~~~~~-~~~~~--~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~~  133 (134)
                      .+++|.+    +-.+.+||.+..+. +..+.  |...|++++|+|.. ..|++| .||-|.+||++
T Consensus       131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  131 IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            7777654    56799999998776 44443  67889999999977 455565 58999999986

>KOG1332|consensus

Probab=99.75  E-value=1.6e-17  Score=95.73  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=91.2

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCCCEeEEEEee--CCCEEEEeeCCCcEEEEecCCCc
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSSGIKHVQFFK--NNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      ..+..+..+-.|++|++++.|+.|+|+..+...  .+...+.+|.++|..++|..  -|..|++++.||.+.||.-.+++
T Consensus        12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence            333336666789999999999999999998755  45567899999999999965  78999999999999999988875


Q ss_pred             eeEEEe---cCCCCeEEEEccCC--cEEEE-ecCCeEEEEeCC
Q psy6446          97 EVQKLE---FGAVPNSLEISRDG--TTITV-THGSCVTFLDAN  133 (134)
Q Consensus        97 ~~~~~~---~~~~v~~~~~~~~~--~~l~~-~~~~~i~i~d~~  133 (134)
                      -.+...   |...+++++|.|++  ..|++ ++||.|.+.+.+
T Consensus        92 w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~  134 (299)
T KOG1332|consen   92 WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD  134 (299)
T ss_pred             hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence            433333   57889999999986  35555 479999998765

>KOG0641|consensus

Probab=99.75  E-value=5.9e-16  Score=88.85  Aligned_cols=132  Identities=19%  Similarity=0.269  Sum_probs=106.6

Q ss_pred             CeeEeecCCCceeeEEe---eC----CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEELHSFQ---HP----HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      ||+.||++-..++.++.   +.    ...+.++++.|.|++|++|..|....+||++.+. ..+.+..|...|.++.|+|
T Consensus       205 tirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp  283 (350)
T KOG0641|consen  205 TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSP  283 (350)
T ss_pred             eEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCC
Confidence            68999999888887775   21    2456669999999999999999999999999765 4567889999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCc--e---eEEEecCCCCeEEEEccCCc-EEEEecCCeEEEEeCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASA--E---VQKLEFGAVPNSLEISRDGT-TITVTHGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~--~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~i~i~d~~  133 (134)
                      ...++++++.|..|++-|++..-  .   ...-.+...+-.+.|+|..- ++.++.|.++.+|-+.
T Consensus       284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999999987421  1   12223677788899999874 4445678999999764

>KOG0641|consensus

Probab=99.75  E-value=4.3e-16  Score=89.40  Aligned_cols=130  Identities=19%  Similarity=0.257  Sum_probs=103.2

Q ss_pred             eeEeecCCCceeeEEeeCCC-ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeE---EeC---CCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHI-VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV---YRG---HSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~---~~~~v~~~~~~~~   74 (134)
                      |++=|..+|+..+.+.++.. +..-..|  ++-.+++|+.|.+|++||++-..+....   +++   ....|..++..|.
T Consensus       165 iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence            55667778888888874444 4443344  6889999999999999999875443211   111   1257899999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+.|++|-.|....+||++.++.++.+. +...|+|+.|+|...+++++ .|..|++=|+.
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            9999999999999999999999998876 67899999999999998876 68999998864

>KOG0973|consensus

Probab=99.74  E-value=3.1e-17  Score=109.50  Aligned_cols=110  Identities=22%  Similarity=0.267  Sum_probs=93.5

Q ss_pred             ceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEE
Q psy6446          11 EELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL   89 (134)
Q Consensus        11 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (134)
                      ++...+. |...+.. +.|+|++.+|++++.|+.|.+|+..+. .....+.+|.+.|..+.|.|-|+++++-+.|++|++
T Consensus       120 k~~~~l~~H~~DV~D-v~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikv  197 (942)
T KOG0973|consen  120 KVVSILRGHDSDVLD-VNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKV  197 (942)
T ss_pred             eEEEEEecCCCccce-eccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEE
Confidence            3566666 6666666 999999999999999999999999997 455788999999999999999999999999999999


Q ss_pred             EecCCCceeEEEec-------CCCCeEEEEccCCcEEEEe
Q psy6446          90 WDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        90 ~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~  122 (134)
                      |++.+......+..       ......+.|+|||++|++.
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence            99877655555542       3456899999999999974

>KOG1007|consensus

Probab=99.74  E-value=7.5e-17  Score=95.05  Aligned_cols=131  Identities=21%  Similarity=0.248  Sum_probs=104.1

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCC
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   76 (134)
                      ++..||+++.++...++  |...+.. +.|+|+.+ .|++++.||.|++||.+..+.+...+.+|...|.++.|+| ..+
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrd-lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRD-LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeee-ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence            57889999998888887  5556666 99999765 4788999999999999998888888999999999999999 677


Q ss_pred             EEEEeeCCCcEEEEecCCCc---------------------e--------eEEEe-cCCCCeEEEEccCCcEEEEe--cC
Q psy6446          77 RLISCAEDKTVRLWDVSASA---------------------E--------VQKLE-FGAVPNSLEISRDGTTITVT--HG  124 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~---------------------~--------~~~~~-~~~~v~~~~~~~~~~~l~~~--~~  124 (134)
                      .+++++.|..+.+|....-.                     .        +.++. ++..|.+++|+.-..+++++  .|
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            88899999999998543211                     0        11111 45679999999988888865  68


Q ss_pred             CeEEEEeC
Q psy6446         125 SCVTFLDA  132 (134)
Q Consensus       125 ~~i~i~d~  132 (134)
                      |++.|=.+
T Consensus       353 GRviIs~V  360 (370)
T KOG1007|consen  353 GRVIISSV  360 (370)
T ss_pred             ceEEeecC
Confidence            98877443

>KOG1274|consensus

Probab=99.74  E-value=2.5e-16  Score=104.10  Aligned_cols=132  Identities=18%  Similarity=0.264  Sum_probs=105.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|.+|...+++.-..+..-.-.+.+++|+.+|++++.|+.|-.|++-++...... ..+++|.++|.++.|+|++++|++
T Consensus        77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDPKGNFLAV  155 (933)
T ss_pred             eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-eeecccCCceeeeeEcCCCCEEEE
Confidence            3566666666554344333334455999999999999999999999999876544 578999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEec---------CCCCeEEEEccCC-cEEEEecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF---------GAVPNSLEISRDG-TTITVTHGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~---------~~~v~~~~~~~~~-~~l~~~~~~~i~i~d~~  133 (134)
                      .+-||.+++||+.++.+...+..         ...+..++|+|+| .+++.+.++.|.+|+.+
T Consensus       156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            99999999999999887766651         2345788999995 56666889999999865

>KOG0303|consensus

Probab=99.73  E-value=1.7e-16  Score=96.88  Aligned_cols=131  Identities=19%  Similarity=0.260  Sum_probs=106.0

Q ss_pred             CeeEeecCCC-------ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe
Q psy6446           1 MGTVWDAVSG-------EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~   72 (134)
                      +|.||++..+       +++..+.++..-+..+.|+| -.+.|++++.|..|.+|++.++..... +. |...|.++.|+
T Consensus       105 ~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-l~-hpd~i~S~sfn  182 (472)
T KOG0303|consen  105 KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-LD-HPDMVYSMSFN  182 (472)
T ss_pred             eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee-cC-CCCeEEEEEec
Confidence            5789998643       35667776656565599999 567889999999999999999876653 44 99999999999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEe-c-CCCCeEEEEccCCcEEEEe----cCCeEEEEeCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLE-F-GAVPNSLEISRDGTTITVT----HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~----~~~~i~i~d~~  133 (134)
                      .||..+++.+.|..|++||.++++.+..-. | +.....+.|-.+|..+.+|    ++.++.+||.+
T Consensus       183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence            999999999999999999999999887663 3 4456778888888866665    35899999864

>KOG2055|consensus

Probab=99.73  E-value=4.8e-16  Score=96.34  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=105.3

Q ss_pred             eeEeecCCCceeeEEe---eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQ---HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      ++.||+.+.+..+.-.   .....+....++|++++|+..+..|.|.+....++..+ ..++ ..+.|..+.|+.+++.|
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~K-ieG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSFK-IEGVVSDFTFSSDSKEL  359 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-heee-eccEEeeEEEecCCcEE
Confidence            4789998877643322   33344445888999999999999999999988875533 3443 45789999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCC--eEEEEccCCcEEEEecC-CeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISRDGTTITVTHG-SCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-~~i~i~d~~  133 (134)
                      +.++.+|.|.+||++...++..+.-.+.+  .+++.++++.++++|++ |.|.|||.+
T Consensus       360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             EEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            99999999999999999999888876665  56777899999999876 999999965

>KOG2055|consensus

Probab=99.73  E-value=9.7e-17  Score=99.34  Aligned_cols=132  Identities=20%  Similarity=0.262  Sum_probs=103.4

Q ss_pred             eeEeecCCCceeeEEeeCCCce-eeEEEccCCcEEEEecCCCeEEEEECCCC-----CCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVK-SSVHFATDSYRLATGSNDKNIRIYDLNKP-----DAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      |.+||+....+++.+...+.+. ..++.++++.+||+|+..|.|.|||.++-     ..+...+..-...|+.++|+++.
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            7899999999999987444432 33788899999999999999999997641     22333334455789999999999


Q ss_pred             CEEEEeeC--CCcEEEEecCCCceeEEEecC----CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          76 TRLISCAE--DKTVRLWDVSASAEVQKLEFG----AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +.|+.++.  ...+++-.+........++..    +.++|++|+|.+-+++.| .+|++.+|-+.
T Consensus       448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99987775  467888888777766666632    468999999999999998 46999999864

>KOG0268|consensus

Probab=99.73  E-value=4.8e-17  Score=98.24  Aligned_cols=130  Identities=16%  Similarity=0.259  Sum_probs=103.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.|||.....++..+.-....+.++.|+| ....|+++..|+.|.+||+++..++....  ..-.-+.++|+|++-.+.+
T Consensus       169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~  246 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVA  246 (433)
T ss_pred             eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCccccceee
Confidence            67999998899999984445555599999 45567778899999999999977655433  2345688999997778889


Q ss_pred             eeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++|..+..+|++.........  |.+.|..+.|+|.|+-++++ .|.+|+||.++
T Consensus       247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            9999999999998765443332  67889999999999888875 69999999864

>KOG1009|consensus

Probab=99.72  E-value=3.8e-17  Score=99.63  Aligned_cols=129  Identities=20%  Similarity=0.313  Sum_probs=102.1

Q ss_pred             eeEeecCCCce---------eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECC--------C-----CC--CCCe
Q psy6446           2 GTVWDAVSGEE---------LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN--------K-----PD--AEPT   57 (134)
Q Consensus         2 i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~--------~-----~~--~~~~   57 (134)
                      |++|-+..+.+         +..+.++...++++.|+|+|..|++|+.+|.+.+|...        +     .+  ....
T Consensus        38 iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k  117 (434)
T KOG1009|consen   38 IRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKK  117 (434)
T ss_pred             eeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEE
Confidence            67887754322         33444667777779999999999999999999999876        2     00  1123


Q ss_pred             EEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEE
Q psy6446          58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFL  130 (134)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~  130 (134)
                      .+.+|...+..++|+|+++++++++.|+.+++||+..|+....+. +...+..++|+|.+++++. +.|...+.+
T Consensus       118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~  192 (434)
T KOG1009|consen  118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGF  192 (434)
T ss_pred             EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCccccee
Confidence            456899999999999999999999999999999999999988876 6788999999999998886 455544443

>KOG1188|consensus

Probab=99.72  E-value=2e-16  Score=94.81  Aligned_cols=133  Identities=15%  Similarity=0.271  Sum_probs=103.1

Q ss_pred             CeeEeecCCCceeeEEe---eCCCceeeEEEccCCcEEEEecC----CCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEe
Q psy6446           1 MGTVWDAVSGEELHSFQ---HPHIVKSSVHFATDSYRLATGSN----DKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~   72 (134)
                      +|++||+++......+.   ++.....|++-+-.++.+++|..    +-.+.+||.++.+. +......|...|++++|+
T Consensus        95 ~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen   95 TVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             eEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence            58999999877666554   33335555666657778888754    56799999998776 444457899999999999


Q ss_pred             e-CCCEEEEeeCCCcEEEEecCCCce----eEEEecCCCCeEEEEccCC--cEEEEecCCeEEEEeCC
Q psy6446          73 K-NNTRLISCAEDKTVRLWDVSASAE----VQKLEFGAVPNSLEISRDG--TTITVTHGSCVTFLDAN  133 (134)
Q Consensus        73 ~-~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~i~i~d~~  133 (134)
                      | +.+.|++|+.||.+.+||+.....    ...+.+.+.|.++.|..++  +.++.+......+|+++
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            9 678899999999999999976533    3344467789999999988  66666788999999875

>KOG2048|consensus

Probab=99.72  E-value=1.5e-15  Score=97.76  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=105.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|.-||+.+++++..++.....+.+++.+|.+..++.|+.||.+..++...+.... ..+....+.+.+++|+|++..++
T Consensus        91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen   91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE
Confidence            47789999999999999888889889999999999999999988888776654222 22334568899999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-----c----CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-----F----GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-----~----~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +|+.||.|++||...+.......     .    ...|.++.|-.++..+..-+.|+|.+||..
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI  233 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence            99999999999999888766222     1    234677887766554444467999999974

>KOG0321|consensus

Probab=99.72  E-value=2.7e-16  Score=100.75  Aligned_cols=134  Identities=19%  Similarity=0.287  Sum_probs=94.1

Q ss_pred             CeeEeecCCCceeeE--EeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC-------------------CC--
Q psy6446           1 MGTVWDAVSGEELHS--FQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA-------------------EP--   56 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~--   56 (134)
                      |++.||+.+.+++..  +-++..-+.+++|.| +...|++|+.||.+.|||++....                   +.  
T Consensus       123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            689999998888765  444444444499999 667889999999999999873220                   00  


Q ss_pred             -----eEEeCCCCCEeE---EEEeeCCCEEEEeeC-CCcEEEEecCCCceeEEEe---------c---CCCCeEEEEccC
Q psy6446          57 -----TVYRGHSSGIKH---VQFFKNNTRLISCAE-DKTVRLWDVSASAEVQKLE---------F---GAVPNSLEISRD  115 (134)
Q Consensus        57 -----~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~---------~---~~~v~~~~~~~~  115 (134)
                           ...+.+...+.+   +-+..|...|++++. |+.|++||++.........         +   ...+.++..+..
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence                 011234445555   555668889998887 9999999998765433222         1   124567777888


Q ss_pred             CcEEEE-ecCCeEEEEeCCC
Q psy6446         116 GTTITV-THGSCVTFLDANS  134 (134)
Q Consensus       116 ~~~l~~-~~~~~i~i~d~~t  134 (134)
                      |.++++ +.|+.|++||+.+
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             CCeEEEEecCCcEEEEeccc
Confidence            877765 5899999999864

>KOG1332|consensus

Probab=99.71  E-value=1.2e-15  Score=88.06  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=100.6

Q ss_pred             CeeEeecCCC---ceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSG---EELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~   74 (134)
                      +|+|+..++.   +++.++.++...+..++|.+  .|+.|++++.||.|.||.-..+.- .......|...|++++|.|+
T Consensus        34 tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph  113 (299)
T KOG1332|consen   34 TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH  113 (299)
T ss_pred             cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccc
Confidence            5889998754   35677886666666688866  899999999999999999877531 12345679999999999995


Q ss_pred             --CCEEEEeeCCCcEEEEecCCC-c-ee--EEEecCCCCeEEEEccC---C-----------cEEEEe-cCCeEEEEeCC
Q psy6446          75 --NTRLISCAEDKTVRLWDVSAS-A-EV--QKLEFGAVPNSLEISRD---G-----------TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 --~~~l~~~~~d~~i~~~d~~~~-~-~~--~~~~~~~~v~~~~~~~~---~-----------~~l~~~-~~~~i~i~d~~  133 (134)
                        |-.|+.++.||.|.+.+++.. . ..  -...|...+++++|.|-   |           +.|+++ .|+.|+||+..
T Consensus       114 eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  114 EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence              456788999999999998764 1 11  12226778899999985   3           346654 78999999865

>KOG0301|consensus

Probab=99.70  E-value=2.1e-16  Score=101.94  Aligned_cols=126  Identities=17%  Similarity=0.308  Sum_probs=108.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|.+|......++..+.++...++|+....++. +++||.|.++++|.....   ...+.+|...|.++..-|++ .++|
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l---~~~l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL---VYSLQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh---hcccCCcchheeeeeecCCC-cEEe
Confidence            467899999999999997777777688777776 999999999999987652   23478999999999999877 8899


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |+.|.+|++|.-  ++.++++. |...|+.+++-+++.++.++.||.|+.|++.
T Consensus       157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD  208 (745)
T ss_pred             ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc
Confidence            999999999964  66777776 6788999999999999999999999999973

>KOG0646|consensus

Probab=99.70  E-value=5.4e-16  Score=96.01  Aligned_cols=131  Identities=15%  Similarity=0.275  Sum_probs=98.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      |.+|.+..........--.+++.|++-+|+|.+++.|...|.+++|.+.++..+ ..+.+|...|+++.|+.|+.+++++
T Consensus        63 l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-~v~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   63 LHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-NVLSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             ccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-HHHHhhccceeEEEEeCCCcEEEec
Confidence            456666544443322222234555999999999999989999999999997754 5678999999999999999999999


Q ss_pred             eCCCcEEEEecCC---------CceeEEEe-cCCCCeEEEEccCC--cEEE-EecCCeEEEEeCC
Q psy6446          82 AEDKTVRLWDVSA---------SAEVQKLE-FGAVPNSLEISRDG--TTIT-VTHGSCVTFLDAN  133 (134)
Q Consensus        82 ~~d~~i~~~d~~~---------~~~~~~~~-~~~~v~~~~~~~~~--~~l~-~~~~~~i~i~d~~  133 (134)
                      +.||.|.+|++..         .++...+. |.-+|..+...+.|  ..++ ++.|.++++||+.
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            9999999998642         23344443 45678888877653  3444 5689999999974

>KOG0322|consensus

Probab=99.70  E-value=3.1e-16  Score=91.36  Aligned_cols=130  Identities=18%  Similarity=0.311  Sum_probs=101.3

Q ss_pred             eeEeecCCCceeeEE----------e-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC---CCCeEEeCCCCCEe
Q psy6446           2 GTVWDAVSGEELHSF----------Q-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD---AEPTVYRGHSSGIK   67 (134)
Q Consensus         2 i~v~d~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~v~   67 (134)
                      +.+||+.++..+..+          . |..++.+ +.+.+.-..=++|+.+-.+..|.++...   .......-....+.
T Consensus       177 vv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls-ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~  255 (323)
T KOG0322|consen  177 VVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS-LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS  255 (323)
T ss_pred             EEEEEccCCceeeccccccccccchhhccCccee-eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence            678999887333222          2 5566666 8888755556778888888889887532   12222333456789


Q ss_pred             EEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          68 HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+...||++.+++++.|+.|++|..++.+++..+. |...+++++|+|+...++++ .|++|.+|++
T Consensus       256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999998887 57889999999998888865 7899999986

>KOG1273|consensus

Probab=99.69  E-value=1.9e-15  Score=90.20  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-CEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~   80 (134)
                      |.|||+.+...-+.+..+...+++++|+++|+.|+++|.|..+.+||+..+....+ + ....+|....|+|.. +..+.
T Consensus        47 vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r-i-rf~spv~~~q~hp~k~n~~va  124 (405)
T KOG1273|consen   47 VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR-I-RFDSPVWGAQWHPRKRNKCVA  124 (405)
T ss_pred             EEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE-E-EccCccceeeeccccCCeEEE
Confidence            67999999888888887777777799999999999999999999999999875443 2 256789999999943 44444


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .-.+..-.+-++..++....-.     ......+..|++.|+++.+| +.|.+.+||.+|
T Consensus       125 ~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  125 TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            4444445555555433222111     11223455799999999998 569999999865

>KOG2048|consensus

Probab=99.69  E-value=1.1e-14  Score=93.80  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             CeeEeecCCCcee-eEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEEL-HSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|.+|++..+-.. ..+. +.+.-+..++|. ++..|++.+.+|.|.-||+.+.++. .......+.+.+++.+|.+..+
T Consensus        48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-~~~d~~gg~IWsiai~p~~~~l  125 (691)
T KOG2048|consen   48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-YNIDSNGGAIWSIAINPENTIL  125 (691)
T ss_pred             cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-EEecCCCcceeEEEeCCccceE
Confidence            4789999875543 3444 556667679999 5667888888999999999997654 4567778999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +.++.||.+..++...++......   ..+.+.+++|+|++..+++| .||.|++||..+
T Consensus       126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            999999988888877666544333   35789999999999988876 689999999864

>KOG4283|consensus

Probab=99.69  E-value=1.6e-15  Score=89.83  Aligned_cols=113  Identities=15%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             CCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC---CEEEEeeCCCcEEEEecCC
Q psy6446          19 PHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN---TRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        19 ~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~   94 (134)
                      +...+..+.|-| |...+.+++.|..+++||.++.+... .+ .-++.|.+-+++|-.   -.+++|..+-.|++.|+..
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~-~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV-DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeE-Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            344555588888 77788899999999999998855432 33 245778888888833   3566778888999999999


Q ss_pred             CceeEEEe-cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          95 SAEVQKLE-FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        95 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      |..-..+. |...|.++.|+|...+++++  .||.|++||++
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiR  219 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIR  219 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEee
Confidence            99888776 67899999999999887753  58999999986

>KOG1036|consensus

Probab=99.69  E-value=2e-15  Score=89.39  Aligned_cols=113  Identities=21%  Similarity=0.258  Sum_probs=95.8

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE   97 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   97 (134)
                      .+...++.+.|+|.++.|++++.||.+++|+..... .. ..-.|..++.+.+|.+ ...+++|+.||.|+.+|+.+++.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-l~-~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-LK-LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-hh-hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence            445667779999999999999999999999998753 22 2335889999999985 66789999999999999999999


Q ss_pred             eEEEecCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          98 VQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        98 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      ...-.|..++.|+.+++....+++ +.|++|++||.+
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            888889999999999986655555 579999999987

>KOG1408|consensus

Probab=99.69  E-value=5e-16  Score=101.25  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec--CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS--NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |.+||....+.-+.+......++|++|+++|+++++|-  ....+++|++..... ...+..|.-.+++++|+|.+++++
T Consensus        60 VVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~v-VAEfvdHKY~vtcvaFsp~~kyvv  138 (1080)
T KOG1408|consen   60 VVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGV-VAEFVDHKYNVTCVAFSPGNKYVV  138 (1080)
T ss_pred             EEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccc-hhhhhhccccceeeeecCCCcEEE
Confidence            66888887777666765556778899999999999985  566899999998664 456788999999999999999999


Q ss_pred             EeeCC--CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          80 SCAED--KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d--~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.+..  -.|.+||.+.......-+..+.|..++|+.+|.|+++.....|++|.++
T Consensus       139 SVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~  194 (1080)
T KOG1408|consen  139 SVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQ  194 (1080)
T ss_pred             eeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEee
Confidence            87764  4688898876665555556778999999999999999999999999874

>KOG2394|consensus

Probab=99.69  E-value=3.7e-16  Score=98.56  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEE
Q psy6446          11 EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW   90 (134)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   90 (134)
                      .++.........+...+|+|||++||+.+.||.++|||+.+.+ +....+..-+...+++|+|||+++++|++|-.|.||
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence            3444444223344449999999999999999999999998844 334456666889999999999999999999999999


Q ss_pred             ecCCCceeEEEe-cCCCCeEEEEc
Q psy6446          91 DVSASAEVQKLE-FGAVPNSLEIS  113 (134)
Q Consensus        91 d~~~~~~~~~~~-~~~~v~~~~~~  113 (134)
                      .+..++.+..=. |.+.|..++|+
T Consensus       360 Sf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  360 SFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EeccceEEEeccccccceeeEeec
Confidence            999888776543 67788888887

>KOG4378|consensus

Probab=99.69  E-value=8.6e-16  Score=96.43  Aligned_cols=133  Identities=14%  Similarity=0.195  Sum_probs=106.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEeeCCCEE-
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRL-   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-   78 (134)
                      +|.|||++...+.+.++.+...+.++.++-...+|++++..|.|.+..+.++.... .+.. ....|.-+.|+|..+.+ 
T Consensus       102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt-~f~~~sgqsvRll~ys~skr~lL  180 (673)
T KOG4378|consen  102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT-TFTIDSGQSVRLLRYSPSKRFLL  180 (673)
T ss_pred             eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-ceecCCCCeEEEeecccccceee
Confidence            47899999777777788666777779999989999999999999999998866543 3433 34556799999977665 


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEE--ecCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITV--THGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~--~~~~~i~i~d~~t  134 (134)
                      .+++.+|.|.+||+....++..+.  |..+...++|+|....|++  |.|.+|.+||+.+
T Consensus       181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            578889999999998877776554  6788899999998865553  5799999999863

>KOG0771|consensus

Probab=99.69  E-value=7.1e-16  Score=94.31  Aligned_cols=108  Identities=25%  Similarity=0.374  Sum_probs=87.0

Q ss_pred             eeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE---
Q psy6446          24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK---  100 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---  100 (134)
                      .+++|+++|..+++|+.||.+|+|+....... .....|.+.|.+++|+||++.|++.+.| ..++|+..++..+..   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh-hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            34999999999999999999999996654433 3456788999999999999999999999 899999987621100   


Q ss_pred             -----------------------Ee----------------c-------------CCCCeEEEEccCCcEEEEe-cCCeE
Q psy6446         101 -----------------------LE----------------F-------------GAVPNSLEISRDGTTITVT-HGSCV  127 (134)
Q Consensus       101 -----------------------~~----------------~-------------~~~v~~~~~~~~~~~l~~~-~~~~i  127 (134)
                                             ..                .             ...+.+++.+++|++++.| .+|.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence                                   00                0             1257899999999999987 68999


Q ss_pred             EEEeCC
Q psy6446         128 TFLDAN  133 (134)
Q Consensus       128 ~i~d~~  133 (134)
                      .||+..
T Consensus       306 ai~~~~  311 (398)
T KOG0771|consen  306 AIYDAK  311 (398)
T ss_pred             EEEEec
Confidence            999875

>KOG1034|consensus

Probab=99.69  E-value=1.8e-16  Score=94.66  Aligned_cols=92  Identities=21%  Similarity=0.402  Sum_probs=81.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCe--EEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPT--VYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |+|.|+.++++...+.+++..++.+.+.| +.++++++|.|..|++|++++..+...  -+.+|...|.+++|++++.++
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence            78999999999999997777777799999 567899999999999999999765432  146899999999999999999


Q ss_pred             EEeeCCCcEEEEecC
Q psy6446          79 ISCAEDKTVRLWDVS   93 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~   93 (134)
                      ++++.|.++++|++.
T Consensus       197 ~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLN  211 (385)
T ss_pred             eccCCcceEEEEecC
Confidence            999999999999987

>KOG1445|consensus

Probab=99.68  E-value=2.5e-16  Score=101.59  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=100.7

Q ss_pred             eeEeecCCC-------ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSG-------EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      |++|-+..+       .+...+..+..-+.++.|+| -.+.|++++.|.+|++||+++.... ..+.+|.+.|..++|+|
T Consensus       652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~-~~l~gHtdqIf~~AWSp  730 (1012)
T KOG1445|consen  652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY-SRLVGHTDQIFGIAWSP  730 (1012)
T ss_pred             EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh-heeccCcCceeEEEECC
Confidence            678887543       24555664444555599999 6678999999999999999986643 46789999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEE-ec----CCeEEEEeCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITV-TH----GSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~-~~----~~~i~i~d~~  133 (134)
                      +|+.+++.+.||++++|+.+.+.....-.   .+..-..+.|.-+|+++++ |.    ..+|.+||..
T Consensus       731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  731 DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            99999999999999999988765432221   1234467889999998876 43    3678888764

>KOG1310|consensus

Probab=99.68  E-value=3.5e-16  Score=99.23  Aligned_cols=121  Identities=20%  Similarity=0.282  Sum_probs=97.4

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee--CCCEEEEeeCCCcEEEE
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNTRLISCAEDKTVRLW   90 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~   90 (134)
                      .+.+.++.+.++|+.|+.+|.+|++|+.|-.+.|||.-..+....+-.+|...|.++.|-|  +.+.+++|+.|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3456678888888999999999999999999999999877766667789999999999999  56778899999999999


Q ss_pred             ecCCCcee----------EEEe-cCCCCeEEEEccCCc--EEEEecCCeEEEEeCC
Q psy6446          91 DVSASAEV----------QKLE-FGAVPNSLEISRDGT--TITVTHGSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~~----------~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~i~i~d~~  133 (134)
                      |+...+.-          ..+. +...|..++-.|++.  +..++.||+|+-||++
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence            99752211          1111 345677888889884  3345689999999986

>KOG2919|consensus

Probab=99.67  E-value=3.7e-15  Score=89.23  Aligned_cols=131  Identities=21%  Similarity=0.293  Sum_probs=100.8

Q ss_pred             eeEeecCCCceeeEEe---eCCCc--eeeEEEccCCcEEEEecCCCeEEEEEC-CCCCCC-Ce--E---EeCCCCCEeEE
Q psy6446           2 GTVWDAVSGEELHSFQ---HPHIV--KSSVHFATDSYRLATGSNDKNIRIYDL-NKPDAE-PT--V---YRGHSSGIKHV   69 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~~~~~d~~v~i~~~-~~~~~~-~~--~---~~~~~~~v~~~   69 (134)
                      |.+||..+|+....+.   |...+  ..+++|+|||.+|++|.. ..|+++|+ +.+... ..  .   ..+..+.+.++
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            7899999999887775   33322  234999999999999865 68999998 443211 11  1   12346789999


Q ss_pred             EEee-CCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          70 QFFK-NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        70 ~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +|+| +...++.++....+-|+.-..+.+...+. +.+.|+.++|.++|..+.+|  .+..|..||++
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            9999 55578888888888888877777777665 67899999999999988887  37899999987

>KOG1517|consensus

Probab=99.67  E-value=5.7e-15  Score=99.67  Aligned_cols=133  Identities=19%  Similarity=0.327  Sum_probs=104.0

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCC--EeEEEEeeC
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSG--IKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~   74 (134)
                      +|+|||.....+++.+. ..+..++++.-+. .|+.+++|..||.+++||.+....  .....+.|...  |..+.+.++
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            48999999888888777 4444444455544 579999999999999999987543  55667788877  999999986


Q ss_pred             CC-EEEEeeCCCcEEEEecCCCceeEEEe------cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          75 NT-RLISCAEDKTVRLWDVSASAEVQKLE------FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        75 ~~-~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |- .|++++.||.|.+||++.......+.      .++..+++..+++...+++|+.+.|.||++.
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence            64 59999999999999999742222111      1345899999999999999877999999974

>KOG0649|consensus

Probab=99.67  E-value=7e-15  Score=85.13  Aligned_cols=113  Identities=20%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK  100 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  100 (134)
                      +.++++...|..+.++.++.|+.++.||+.++. ..+.+++|..-+.++.-......+++|++||++++||+++.+++..
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence            446679999988888888899999999999976 4578999999999999866667789999999999999999999888


Q ss_pred             Eec---CCC----C--eEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446         101 LEF---GAV----P--NSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus       101 ~~~---~~~----v--~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      +..   ++.    .  .-.+..-+..++++|..-.+.+|++++
T Consensus       194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrs  236 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRS  236 (325)
T ss_pred             eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccC
Confidence            762   111    1  113444567799999889999999864

>KOG1007|consensus

Probab=99.67  E-value=1.1e-15  Score=90.14  Aligned_cols=130  Identities=20%  Similarity=0.336  Sum_probs=98.0

Q ss_pred             eeEeecCCCce-eeEEe-----eCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEE-LHSFQ-----HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~-~~~~~-----~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      |.+|++..+.. ++.+.     ....-+++-+|+|  +++.+++.+ |+++..||+++..+......+|...|..++|+|
T Consensus       146 i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp  224 (370)
T KOG1007|consen  146 IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP  224 (370)
T ss_pred             eEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence            67899887665 44443     1122344488998  788888764 689999999998777667788999999999999


Q ss_pred             CCC-EEEEeeCCCcEEEEecCCCc-eeEEEe-cCCCCeEEEEccCC-cEEEEe-cCCeEEEEeC
Q psy6446          74 NNT-RLISCAEDKTVRLWDVSASA-EVQKLE-FGAVPNSLEISRDG-TTITVT-HGSCVTFLDA  132 (134)
Q Consensus        74 ~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~-~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~  132 (134)
                      +.+ +|++++.||.|++||++..+ ++..+. |...+.++.|+|.- ++++++ +|..|.+|..
T Consensus       225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            766 46799999999999998654 444444 56779999999965 455554 6888888865

>KOG2919|consensus

Probab=99.67  E-value=3.1e-15  Score=89.51  Aligned_cols=133  Identities=24%  Similarity=0.407  Sum_probs=98.6

Q ss_pred             CeeEeec-CCCceee---EEe----eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE
Q psy6446           1 MGTVWDA-VSGEELH---SFQ----HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~-~~~~~~~---~~~----~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~   71 (134)
                      +|+++|+ +.|+.-.   ++.    +...+++|++|+| +.+.++.|+.-..+-||.-.... +...+.+|.+.|+.++|
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEe
Confidence            4789998 4554321   111    4467888899999 66789999988888888766544 45677899999999999


Q ss_pred             eeCCCEEEEeeC-CCcEEEEecCCCce-eEEEe-c-CCCCeEEE--EccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          72 FKNNTRLISCAE-DKTVRLWDVSASAE-VQKLE-F-GAVPNSLE--ISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        72 ~~~~~~l~~~~~-d~~i~~~d~~~~~~-~~~~~-~-~~~v~~~~--~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .++|+.|.+|++ +..|..||++..+. +..+. + ...-..+-  ..|++++|++| .+|.|++||++.
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            999999998876 67899999986543 33332 2 21233444  46788999998 689999999863

>KOG2096|consensus

Probab=99.66  E-value=2.4e-15  Score=89.94  Aligned_cols=129  Identities=18%  Similarity=0.259  Sum_probs=95.3

Q ss_pred             eeEeecC---CCc-----eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC----C--CCC----eEEeCCC
Q psy6446           2 GTVWDAV---SGE-----ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP----D--AEP----TVYRGHS   63 (134)
Q Consensus         2 i~v~d~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~----~--~~~----~~~~~~~   63 (134)
                      |++|++-   .|.     .+..++++...+.+++|++++..+++.+.||.+++||.+-.    +  ...    ..+....
T Consensus       252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag  331 (420)
T KOG2096|consen  252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG  331 (420)
T ss_pred             ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence            5677752   222     24455666666666999999999999999999999997631    1  011    1122334


Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      +....+..+|+++.|+.+.. ..++++..++++....+.  +...|.+++|+++|+++++++|..++++-
T Consensus       332 ~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  332 SEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             CCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            55669999999998876543 469999998887766655  68899999999999999999998887763

>KOG0299|consensus

Probab=99.66  E-value=9.1e-16  Score=94.93  Aligned_cols=111  Identities=21%  Similarity=0.384  Sum_probs=96.0

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  101 (134)
                      .+.+++.++|+++|++|+.|..+.||+.++.... ..+++|.+.|.+++|-.....+++++.|+.+++|++.....+.++
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv-~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl  282 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV-KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL  282 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchh-hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence            3445999999999999999999999999996654 568999999999999988889999999999999999887766655


Q ss_pred             e-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         102 E-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       102 ~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      . |...|..+.-..-++.+.++ .|+++++|++.
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~  316 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP  316 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEecc
Confidence            4 67888888877777888776 79999999873

>KOG0290|consensus

Probab=99.66  E-value=1.5e-14  Score=85.61  Aligned_cols=129  Identities=19%  Similarity=0.362  Sum_probs=96.7

Q ss_pred             CeeEeecCCCce----eeEEeeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCC----------------------
Q psy6446           1 MGTVWDAVSGEE----LHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPD----------------------   53 (134)
Q Consensus         1 ~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~----------------------   53 (134)
                      |-.|||++++..    .+.+.|.+.+.. ++|...+ +.|++.+.||.+++||++...                      
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~D-Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk  252 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYD-IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK  252 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeE-EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence            457999998733    233447777777 9999854 568899999999999997321                      


Q ss_pred             -------------------------CCCeEEeCCCCCEeEEEEeeC-CCEEEEeeCCCcEEEEecCCCc------eeEEE
Q psy6446          54 -------------------------AEPTVYRGHSSGIKHVQFFKN-NTRLISCAEDKTVRLWDVSASA------EVQKL  101 (134)
Q Consensus        54 -------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~  101 (134)
                                               .+...+.+|++.|+.++|.|. ...+++++.|..+.+||+.+..      ++...
T Consensus       253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay  332 (364)
T KOG0290|consen  253 QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY  332 (364)
T ss_pred             CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh
Confidence                                     011235679999999999994 5789999999999999997532      23333


Q ss_pred             ecCCCCeEEEEccC-CcEEEEecCCeEEEE
Q psy6446         102 EFGAVPNSLEISRD-GTTITVTHGSCVTFL  130 (134)
Q Consensus       102 ~~~~~v~~~~~~~~-~~~l~~~~~~~i~i~  130 (134)
                      ..+.+|+.+.|++. +.+++++.++++.+.
T Consensus       333 ~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  333 TAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             hccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            35788999999964 578998887777654

>KOG2445|consensus

Probab=99.66  E-value=2.3e-14  Score=85.24  Aligned_cols=118  Identities=18%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             EEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC---CCeEEeCCCCCEeEEEEee--CCCEEEEeeCCCcEE
Q psy6446          15 SFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA---EPTVYRGHSSGIKHVQFFK--NNTRLISCAEDKTVR   88 (134)
Q Consensus        15 ~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   88 (134)
                      .+. ++...+.++.|++.|+.+++++.|+.++|||.+....   .....+.|.+.|..+.|.+  -|+.+++++.|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            344 4557778899999999999999999999999765332   2234678999999999965  589999999999999


Q ss_pred             EEecCCC-------c--eeEEEe-cCCCCeEEEEccC--CcEEEE-ecCCeEEEEeC
Q psy6446          89 LWDVSAS-------A--EVQKLE-FGAVPNSLEISRD--GTTITV-THGSCVTFLDA  132 (134)
Q Consensus        89 ~~d~~~~-------~--~~~~~~-~~~~v~~~~~~~~--~~~l~~-~~~~~i~i~d~  132 (134)
                      ||.-...       +  ...++. ..+.|..++|.|.  |-.+++ +.||.++||+.
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            9975211       1  111222 3678999999995  445555 47999999985

>KOG0307|consensus

Probab=99.65  E-value=4.6e-16  Score=104.71  Aligned_cols=132  Identities=23%  Similarity=0.302  Sum_probs=96.6

Q ss_pred             CeeEeecCC---Cc---eeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeE-EeCCCCCEeEEEE
Q psy6446           1 MGTVWDAVS---GE---ELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~---~~---~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~v~~~~~   71 (134)
                      +|.+||...   +.   .+.++. |.+.+.. +.|++ .++.|++|+.||.|.|||++....+... -......|.+++|
T Consensus        91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASEEVLATKSKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             ceEEecchhhccCcchHHHhhhcccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            367888754   22   344555 6667777 99999 5569999999999999999985544321 1124578999999


Q ss_pred             eeC-CCEEEEeeCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCc--EEEEec-C--CeEEEEeCC
Q psy6446          72 FKN-NTRLISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGT--TITVTH-G--SCVTFLDAN  133 (134)
Q Consensus        72 ~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~--~l~~~~-~--~~i~i~d~~  133 (134)
                      +.. ...|++++.+|...+||++..+++-.+...   ..+..+.|+|+..  .++++. |  -.|.+||+|
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            874 456778888999999999988877776643   3477999999973  344443 3  489999976

>KOG2106|consensus

Probab=99.65  E-value=4.9e-14  Score=88.74  Aligned_cols=125  Identities=13%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ++++|+  ..+++....-..+..+ +.|+|.| .++.|...|...+.|..+. ........ ..+++.++|+|+|.+|+.
T Consensus       391 ~v~lW~--~~k~~wt~~~~d~~~~-~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  391 HVRLWN--DHKLEWTKIIEDPAEC-ADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             eEEEcc--CCceeEEEEecCceeE-eeccCcc-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEE
Confidence            478899  5677766666666665 9999999 9999999999999998873 33333334 789999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEE-Ee--cCCCCeEEEEccCCcEEEE-ecCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQK-LE--FGAVPNSLEISRDGTTITV-THGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~-~~--~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d  131 (134)
                      ++.|+.|.+|.+........ ..  +.+++..+.|++|++++.+ +.|..|..|.
T Consensus       465 gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            99999999999875543332 22  3588999999999999997 4688999994

>KOG0307|consensus

Probab=99.65  E-value=1.5e-15  Score=102.38  Aligned_cols=132  Identities=16%  Similarity=0.325  Sum_probs=107.9

Q ss_pred             eeEeecCCCceeeEEe-eCC-CceeeEEEccC-CcEEEEecCCC---eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-
Q psy6446           2 GTVWDAVSGEELHSFQ-HPH-IVKSSVHFATD-SYRLATGSNDK---NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   74 (134)
                      +.|||++..+++-.+. +.. ...+.+.|+|+ .+.+++++.|.   .|.+||++....+.+++.+|...|.++.|++. 
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            5699999888877776 333 33566999995 45677776653   68999999888788888999999999999995 


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCc-EEEE-ecCCeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGT-TITV-THGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~-~~~~~i~i~d~~  133 (134)
                      ..++++++.|+.+.+|+..+++.+..+.. ...+..+.|.|... .+++ +-+|.|.||.+.
T Consensus       266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            48899999999999999999999998875 56789999999876 4444 468999999875

>KOG4328|consensus

Probab=99.65  E-value=1.5e-15  Score=94.11  Aligned_cols=132  Identities=22%  Similarity=0.243  Sum_probs=100.4

Q ss_pred             CeeEeecCCCce--eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCE
Q psy6446           1 MGTVWDAVSGEE--LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~   77 (134)
                      ||+.-|++.+..  +..++.....++.+.|+.+...++.+..=|...+||++++......+.-|...|+.++++| ...+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            355556554432  2223334455666888887778888888789999999998776666777888999999999 5567


Q ss_pred             EEEeeCCCcEEEEecCCCce-----eEEEecCCCCeEEEEccCCcEEEE-ecCCeEEEEeC
Q psy6446          78 LISCAEDKTVRLWDVSASAE-----VQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~  132 (134)
                      ++|++.|++.+|||++.-..     +..+.|...|.+..|+|.+-.|++ +.|..|+|||.
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            89999999999999986332     445557889999999998865665 58999999996

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.5e-14  Score=91.01  Aligned_cols=127  Identities=16%  Similarity=0.114  Sum_probs=85.2

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |.+||..... ...+. +...+.. ..|+|+|+.|+..+.+   ..|++||+.++...  .+....+....++|+||++.
T Consensus       186 i~i~d~dg~~-~~~lt~~~~~v~~-p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        186 VRVADYDGFN-QFIVNRSSQPLMS-PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             EEEECCCCCC-ceEeccCCCcccc-ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCCE
Confidence            6788876444 44444 4444555 9999999999887643   47999999875422  22223334457899999998


Q ss_pred             EEEee-CCCcEEEE--ecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          78 LISCA-EDKTVRLW--DVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~-~d~~i~~~--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      |+.+. .++...+|  |+.+++......+...+....|+|||+.++..  .++...+|++
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            88654 67765554  66666544433345567889999999977754  3577777765

>KOG1963|consensus

Probab=99.64  E-value=4.2e-14  Score=93.32  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=102.3

Q ss_pred             eeEeecCCCceee-EE---eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC---CCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELH-SF---QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK---PDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      +.+|+..++.... ..   .++.-.+.|.+++|++++++++..||+|.+|.--.   .......++.|...|.++.|+++
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence            4577776544111 11   13333367799999999999999999999997433   22344568889999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE-ecCCeEEEEeC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-THGSCVTFLDA  132 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~  132 (134)
                      |.+|++|+.++.+.+|.+.+++....-+..++|..+.++||+.+.+. ..|+.|++...
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            99999999999999999999985544456899999999999987665 58999988754

>KOG1063|consensus

Probab=99.63  E-value=4.1e-15  Score=96.18  Aligned_cols=118  Identities=14%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             EEeeCCCceeeEEEccCCcEEEEecCCC-----eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEE
Q psy6446          15 SFQHPHIVKSSVHFATDSYRLATGSNDK-----NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL   89 (134)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   89 (134)
                      ++-+++..+.+++.+|+++++++++...     .|++|+..+.... ..+.+|.-.|+.++|+||+++|+++++|+++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            3445666677799999999999987643     5899998876544 468899999999999999999999999999999


Q ss_pred             EecCCCcee----E-EEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          90 WDVSASAEV----Q-KLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        90 ~d~~~~~~~----~-~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |........    . .-.|..-|....|+|++.+++++ .|.+|.+|...
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            987543211    1 11255668999999999988865 79999999753

>KOG2110|consensus

Probab=99.63  E-value=3e-13  Score=82.14  Aligned_cols=94  Identities=17%  Similarity=0.277  Sum_probs=80.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCe-EEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKN-IRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l   78 (134)
                      .|.+||+.+-+++..+..++..+.|++|+++|.+||+++..|+ ||++.+.+++.....-+|. ...|.+++|+|++++|
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            3789999999999999977777888999999999999999996 5899998877665443443 3468899999999999


Q ss_pred             EEeeCCCcEEEEecCC
Q psy6446          79 ISCAEDKTVRLWDVSA   94 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~   94 (134)
                      .+.+..++|++|.+..
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            9999999999998753

>KOG1009|consensus

Probab=99.62  E-value=4.8e-14  Score=86.41  Aligned_cols=116  Identities=25%  Similarity=0.351  Sum_probs=89.5

Q ss_pred             eCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCC--------CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEE
Q psy6446          18 HPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAE--------PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVR   88 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   88 (134)
                      |....+..+.|.+++. .+++|+.|..|++|.+......        ...+..|...|+.+.|+|+|..|++|+.+|.+.
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            3333343489988665 9999999999999998753321        124567999999999999999999999999999


Q ss_pred             EEecC--------C----Cc----eeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          89 LWDVS--------A----SA----EVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        89 ~~d~~--------~----~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|...        +    .+    ..+.+. +...+..++|+|++.+++++ .|+.+++||+.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            99765        1    01    111111 56789999999999999986 68999999986

>KOG1408|consensus

Probab=99.62  E-value=1.8e-14  Score=94.19  Aligned_cols=133  Identities=15%  Similarity=0.245  Sum_probs=103.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc---CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC--------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT---DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS--------------   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~--------------   63 (134)
                      +++|||+.+-+....++.++..+.|+.++.   ..++|++++.|..|++||....-.+...+.+|.              
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            489999998888888885555555699986   346889999999999999863221222222221              


Q ss_pred             -----------------------------------CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe----cC
Q psy6446          64 -----------------------------------SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE----FG  104 (134)
Q Consensus        64 -----------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~  104 (134)
                                                         ..+..|+..|..+++++++.|+.|+|||+..++..+.++    ++
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e  641 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE  641 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence                                               245677788888889999999999999999999999987    34


Q ss_pred             CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         105 AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +..-.+..+|.|-|++++ .|.++.++|.-
T Consensus       642 G~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             CceEEEEECCCccEEEEeecCCceEEEEec
Confidence            567788999999999986 89999999974

>KOG0321|consensus

Probab=99.62  E-value=6.1e-15  Score=94.72  Aligned_cols=116  Identities=20%  Similarity=0.319  Sum_probs=85.7

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEecCCC
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~   95 (134)
                      |.+.++. +.|-|....|++++.|.++++||+.+..... ..+.+|.+.|.+++|+| +...+++|+.||.+.|||++..
T Consensus        99 H~nAifD-l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen   99 HKNAIFD-LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             ccceeEe-eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            5666666 9999977789999999999999998865332 24789999999999999 5567889999999999998743


Q ss_pred             c--------------------eeEEEe--------cCCCCeE---EEEccCCcEEEE-e-cCCeEEEEeCCC
Q psy6446          96 A--------------------EVQKLE--------FGAVPNS---LEISRDGTTITV-T-HGSCVTFLDANS  134 (134)
Q Consensus        96 ~--------------------~~~~~~--------~~~~v~~---~~~~~~~~~l~~-~-~~~~i~i~d~~t  134 (134)
                      .                    +...+.        ....+.+   +.+..|...|++ | .|+.|++||+++
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            2                    000000        1123333   555567777775 4 489999999974

>KOG0650|consensus

Probab=99.61  E-value=2.6e-15  Score=95.98  Aligned_cols=130  Identities=16%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .|+|||+..++.++.+......++.++.+|.|..|+.|+.|+.+..+|++....+.+.+.-|...+..++|++.-..+++
T Consensus       588 ~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas  667 (733)
T KOG0650|consen  588 SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS  667 (733)
T ss_pred             ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Confidence            47999999888888877555666669999999999999999999999999887777888899999999999999999999


Q ss_pred             eeCCCcEEEEe------cCCCcee---EEEe-c----CCCCeEEEEccCCcEEEE-ecCCeEEEE
Q psy6446          81 CAEDKTVRLWD------VSASAEV---QKLE-F----GAVPNSLEISRDGTTITV-THGSCVTFL  130 (134)
Q Consensus        81 ~~~d~~i~~~d------~~~~~~~---~~~~-~----~~~v~~~~~~~~~~~l~~-~~~~~i~i~  130 (134)
                      ++.|+++.++-      +.....+   ..+. |    ...|....|+|...+|++ |.||+|++|
T Consensus       668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99999998883      2222222   2222 1    234677889999999887 478999998

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.1e-14  Score=89.60  Aligned_cols=127  Identities=21%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEE--ECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIY--DLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++||+.+++............ .++|+|||+.|+.++ .+|...+|  |+.++.  ...+..+...+....|+||++.+
T Consensus       230 i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i  306 (429)
T PRK01742        230 LVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSI  306 (429)
T ss_pred             EEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEE
Confidence            7899998876533222222233 489999999888764 67765555  555433  23455666778899999999987


Q ss_pred             EEee-CCCcEEEEecCCC-ceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          79 ISCA-EDKTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +..+ .++...+|++... .....+....  ....|+|+|+.++......+.+||+.
T Consensus       307 ~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~  361 (429)
T PRK01742        307 LFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLT  361 (429)
T ss_pred             EEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECC
Confidence            7554 5677888876432 2222222222  45789999998877654556668865

>KOG1272|consensus

Probab=99.61  E-value=1.9e-15  Score=93.93  Aligned_cols=125  Identities=12%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             EeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC
Q psy6446           4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE   83 (134)
Q Consensus         4 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (134)
                      --|+.+|+.+..+....+.+..+.-+|-...+-+|...|.|.+|......++. .+..|.++|.++++.++|++++|.+.
T Consensus       235 Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv-KiLcH~g~V~siAv~~~G~YMaTtG~  313 (545)
T KOG1272|consen  235 YQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV-KILCHRGPVSSIAVDRGGRYMATTGL  313 (545)
T ss_pred             EEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH-HHHhcCCCcceEEECCCCcEEeeccc
Confidence            45778888888887555666668889988899999999999999998866554 45689999999999999999999999


Q ss_pred             CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEE
Q psy6446          84 DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus        84 d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      |..++|||++.-..+.....+.+...+++|..| .|+++....+.+|
T Consensus       314 Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  314 DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIW  359 (545)
T ss_pred             ccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeee
Confidence            999999999988877776666777888888664 5666666777777

>KOG2394|consensus

Probab=99.61  E-value=1.1e-14  Score=92.10  Aligned_cols=113  Identities=13%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             CceeeEEEcc-CCcEEEEecCCCeEEEEECCCCC---------------------------CCCeEEeCCCCCEeEEEEe
Q psy6446          21 IVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD---------------------------AEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus        21 ~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~   72 (134)
                      .-++|+.|-| +...++++..+|.+++||.....                           .+...+..-.+.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            3455699988 55667777889999999764210                           0111111224578999999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |||++|++.+.||.++|||..+.+.+..++. -+...|++|+|||++|++| .|.-|.||.+.
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            9999999999999999999988776665553 4567899999999999986 68999999864

>KOG0771|consensus

Probab=99.60  E-value=2.1e-14  Score=88.00  Aligned_cols=128  Identities=18%  Similarity=0.171  Sum_probs=99.1

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-----------------------
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-----------------------   56 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-----------------------   56 (134)
                      ++|||++.+...+.... |+..+-. +.|+|||+.|++-+.| ..+||+.+++....                       
T Consensus       167 ~lRv~~~Ps~~t~l~e~~~~~eV~D-L~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~  244 (398)
T KOG0771|consen  167 TLRVWEWPSMLTILEEIAHHAEVKD-LDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE  244 (398)
T ss_pred             eEEEEecCcchhhhhhHhhcCcccc-ceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCc
Confidence            47999988877766665 6655555 9999999999999999 89999998751100                       


Q ss_pred             --eEE---------------eCC-------------CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--cC
Q psy6446          57 --TVY---------------RGH-------------SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FG  104 (134)
Q Consensus        57 --~~~---------------~~~-------------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~  104 (134)
                        ...               ..+             ...+++++.+++|++++.|+.||.|.+++..+.+.....+  |.
T Consensus       245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~  324 (398)
T KOG0771|consen  245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHL  324 (398)
T ss_pred             eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhe
Confidence              000               001             2368999999999999999999999999998888877766  57


Q ss_pred             CCCeEEEEccCCcEEEE-ecCCeEEEE
Q psy6446         105 AVPNSLEISRDGTTITV-THGSCVTFL  130 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~-~~~~~i~i~  130 (134)
                      ..|+.+.|+|+.++++. +.+.+..+.
T Consensus       325 ~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             eeeeeEEEcCCcCcccccccCCceeEE
Confidence            78999999999988875 455555544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=5.6e-13  Score=82.90  Aligned_cols=132  Identities=17%  Similarity=0.159  Sum_probs=90.2

Q ss_pred             CeeEeecCC-Cc--eeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCCeE-EeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVS-GE--ELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEPTV-YRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~   75 (134)
                      +|++||+.+ ++  .+..++....... +.++|++++|++++ .++.|.+|+++........ .....+....+.++|++
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~-l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g   91 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVDVPGQVQP-MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG   91 (330)
T ss_pred             CEEEEEECCCCceeeeeEEecCCCCcc-EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC
Confidence            478999964 43  4455554444455 99999999987764 5788999998732221111 11233457899999999


Q ss_pred             CEEEEeeC-CCcEEEEecCC-Cc---eeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          76 TRLISCAE-DKTVRLWDVSA-SA---EVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~-d~~i~~~d~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +++++++. ++.+.+|++.+ +.   ....+.......+++++|++++++++  .++.|.+||++
T Consensus        92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            99887664 78899999864 22   22222233456788999999888654  46999999985

>KOG0290|consensus

Probab=99.60  E-value=1.2e-13  Score=81.83  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             CCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEEeeCC-CEEEEeeCCCcEEEEecCCC
Q psy6446          20 HIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        20 ~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~   95 (134)
                      ...+++..|+. +.++|.+++-|-+..|||+.++..  ....+-+|..+|..++|...+ +.+++++.||.+++||++..
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence            34455589988 888999999999999999998632  334567899999999999855 56789999999999999752


Q ss_pred             ce-------------e-----------------------------------EEE-ecCCCCeEEEEccCC-cEEEEe-cC
Q psy6446          96 AE-------------V-----------------------------------QKL-EFGAVPNSLEISRDG-TTITVT-HG  124 (134)
Q Consensus        96 ~~-------------~-----------------------------------~~~-~~~~~v~~~~~~~~~-~~l~~~-~~  124 (134)
                      +.             +                                   ..+ .|...|+.++|.|.. ..++++ .|
T Consensus       230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            21             0                                   001 145678999999987 456654 56


Q ss_pred             CeEEEEeCC
Q psy6446         125 SCVTFLDAN  133 (134)
Q Consensus       125 ~~i~i~d~~  133 (134)
                      .++.+||+.
T Consensus       310 ~qaliWDl~  318 (364)
T KOG0290|consen  310 CQALIWDLQ  318 (364)
T ss_pred             ceEEEEecc
Confidence            899999985

>KOG3881|consensus

Probab=99.60  E-value=1.3e-13  Score=84.21  Aligned_cols=133  Identities=13%  Similarity=0.208  Sum_probs=109.4

Q ss_pred             eeEeecCCCceeeEEee-CCC--------ceeeEEEccC--CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQH-PHI--------VKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~~~--------~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~   70 (134)
                      +.|||++..+.+..-+. ++.        -.+.+.|-+.  ...|++++.-+.+++||.+.+..+...+.--..+++++.
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG  254 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence            57999988766655431 111        1233677765  788999999999999999988888777777788999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEE-Ee-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQK-LE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ..|.++.++++...+.+..||++.++.... +. ..+.++++..+|..++++++ -|..++|+|++|
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            999999999999999999999999887765 33 46789999999999999975 699999999875

>KOG2139|consensus

Probab=99.59  E-value=1.3e-13  Score=83.75  Aligned_cols=129  Identities=14%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCC-------------eEEeCCCCC
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEP-------------TVYRGHSSG   65 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-------------~~~~~~~~~   65 (134)
                      +|++||-.+ +....++ .....+.|++|.| .++.|++|+.. -|.+|.........             ....+| ..
T Consensus       121 vVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~p  197 (445)
T KOG2139|consen  121 VVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NP  197 (445)
T ss_pred             EEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ce
Confidence            478898665 4444555 3445566799999 55677887765 58999865321111             112344 68


Q ss_pred             EeEEEEeeCCCEEEEeeC-CCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          66 IKHVQFFKNNTRLISCAE-DKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      |++|+|++|+..+++++- +..|.+||..++....... ....+.-+.|+||+.++++. -|+..++|+.
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            999999999999998765 5679999999988766553 45677889999999887765 7999999953

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=3.4e-13  Score=77.87  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             EEEccCCcEEEEecC----------CCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEEEEe--eCCCcEEEEec
Q psy6446          26 VHFATDSYRLATGSN----------DKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLISC--AEDKTVRLWDV   92 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~   92 (134)
                      +.|+|+|+.|++-..          -+...+|.++........+. ...++|.+++|+|+++.++..  ..++.+.+||+
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~   90 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV   90 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence            889999988765432          23455666644333333332 344579999999999987644  45678999999


Q ss_pred             CCCceeEEEecCCCCeEEEEccCCcEEEEec----CCeEEEEeCC
Q psy6446          93 SASAEVQKLEFGAVPNSLEISRDGTTITVTH----GSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~d~~  133 (134)
                      + ++.+..+. ...+..+.|+|+|+++++++    .|.|.+||++
T Consensus        91 ~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   91 K-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             c-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            6 55555554 45678999999999998752    4789999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.59  E-value=1.1e-12  Score=82.69  Aligned_cols=131  Identities=23%  Similarity=0.426  Sum_probs=100.7

Q ss_pred             CeeEeecCC-CceeeEEeeCCCceeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-E
Q psy6446           1 MGTVWDAVS-GEELHSFQHPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-R   77 (134)
Q Consensus         1 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   77 (134)
                      ++.+||... ......+..+...+..+.|+|++..++.++. ++.+++|+..... ....+.+|...+.+++|+|++. .
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceE
Confidence            478899887 6777777755555556999999998888885 9999999998743 3456677999999999999888 5


Q ss_pred             EEEeeCCCcEEEEecCCCceeE-EEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQ-KLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +++++.|+.+.+||...+.... .+. +.... ...|+|++.+++. +.++.+++||++
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            5555899999999988777666 343 22332 2279999966665 478999999975

>KOG0642|consensus

Probab=99.58  E-value=8.6e-14  Score=88.28  Aligned_cols=94  Identities=22%  Similarity=0.379  Sum_probs=74.7

Q ss_pred             CeeEeecCC--------CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC---------CCCCeEEeCCC
Q psy6446           1 MGTVWDAVS--------GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP---------DAEPTVYRGHS   63 (134)
Q Consensus         1 ~i~v~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~~   63 (134)
                      +|.+|+++.        -+++.+|+.+...+-|+.+.+++..+++|+.||.|+.|++...         ......+.||.
T Consensus       317 ~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght  396 (577)
T KOG0642|consen  317 TLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT  396 (577)
T ss_pred             chhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc
Confidence            366888822        2467888855555555999999999999999999999966421         12334678999


Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      ..+..+++++....|++++.||++++|+...
T Consensus       397 davw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  397 DAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             cceeeeeecccccceeeecCCceEEeeccCC
Confidence            9999999999888999999999999998754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.2e-13  Score=85.51  Aligned_cols=128  Identities=13%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |.++|... .....+. +...+.. ..|+|||+.|+..+.   +..|++||+.++..  ..+..+.+.+...+|+||++.
T Consensus       184 l~~~d~dg-~~~~~lt~~~~~v~~-p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        184 LAIMDQDG-ANVRYLTDGSSLVLT-PRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEECCCC-CCcEEEecCCCCeEe-eEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence            56777654 4444444 4444554 999999999887653   46899999987643  334556677888999999998


Q ss_pred             EE-EeeCCCc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--C--CeEEEEeCC
Q psy6446          78 LI-SCAEDKT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--G--SCVTFLDAN  133 (134)
Q Consensus        78 l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~d~~  133 (134)
                      ++ +.+.++.  |.++|+.+++...............|+|||+.++..+  +  ..|+++|+.
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence            75 5555554  7778888776654333445567799999999887543  2  378888764

>KOG4328|consensus

Probab=99.57  E-value=1.1e-13  Score=85.94  Aligned_cols=131  Identities=20%  Similarity=0.270  Sum_probs=97.0

Q ss_pred             eeEeecCCCce-eeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC---CeEEeCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEE-LHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~   75 (134)
                      ..+||.+++.- ...+. |...+.+ ++++| ...+|++++.|++.+|||++.....   ......|...|.+..|+|.+
T Consensus       303 f~~iD~R~~~s~~~~~~lh~kKI~s-v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  303 FNVIDLRTDGSEYENLRLHKKKITS-VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             eEEEEeecCCccchhhhhhhcccce-eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            35788876554 44555 5555555 99999 6677899999999999999863321   12345799999999999987


Q ss_pred             CEEEEeeCCCcEEEEecC----CCceeEEEecCC------CCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVS----ASAEVQKLEFGA------VPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      -.|++-+.|..|+|||..    ...+...+.|..      ......|.|+..+++++. -..|-++|-+
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence            779999999999999983    445555666532      235678999999998873 4667777753

>KOG1538|consensus

Probab=99.57  E-value=7e-15  Score=95.58  Aligned_cols=125  Identities=21%  Similarity=0.315  Sum_probs=100.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +.+||...|..+.+++++...+.|++|+.+|+.+++|+.|..|.+|.-.-...   ..-.|...|.+|.|+|-...|+++
T Consensus        35 lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFNP~~h~LasC  111 (1081)
T KOG1538|consen   35 LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFNPITHQLASC  111 (1081)
T ss_pred             EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---eeeccCCeeeEeecCchHHHhhhc
Confidence            57999999999999997777777799999999999999999999998654322   234699999999999988889988


Q ss_pred             eCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +-. ..-+|..... .+...+....+.+.+|..||++++.| .+|+|.+-+
T Consensus       112 sLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen  112 SLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             chh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            764 3567765432 23333345678899999999999998 689998865

>KOG1272|consensus

Probab=99.57  E-value=9.5e-15  Score=90.96  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=108.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      ++||| ..|..++.++....+.. +.|-|..-+|++++..|.++.-|+.+++... .+..-.+.+..|.-+|-+..+-+|
T Consensus       193 ~yvYD-~~GtElHClk~~~~v~r-LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa-~~~t~~G~~~vm~qNP~NaVih~G  269 (545)
T KOG1272|consen  193 VYVYD-NNGTELHCLKRHIRVAR-LEFLPYHFLLVAASEAGFLKYQDVSTGKLVA-SIRTGAGRTDVMKQNPYNAVIHLG  269 (545)
T ss_pred             EEEec-CCCcEEeehhhcCchhh-hcccchhheeeecccCCceEEEeechhhhhH-HHHccCCccchhhcCCccceEEEc
Confidence            57888 45788888887777776 9999998899999999999999999877544 344456788889989988888999


Q ss_pred             eCCCcEEEEecCCCceeEEE-ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ..+|+|.+|.....+++..+ .|.++|.++++.++|++++++ .|..++|||+++
T Consensus       270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            99999999998877766544 478999999999999999975 799999999974

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.1e-12  Score=84.16  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+||+.+++........... .+..|+|||+.|+ +.+.++...+|.++........+..+........|+||++.++.
T Consensus       222 I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f  300 (427)
T PRK02889        222 VYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYF  300 (427)
T ss_pred             EEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEE
Confidence            788999888765433233333 3499999999886 45777776666543322222334445555677899999998876


Q ss_pred             eeC-CCcEEEEec--CCCceeEEEecCCCCeEEEEccCCcEEEEe-cC---CeEEEEeCC
Q psy6446          81 CAE-DKTVRLWDV--SASAEVQKLEFGAVPNSLEISRDGTTITVT-HG---SCVTFLDAN  133 (134)
Q Consensus        81 ~~~-d~~i~~~d~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---~~i~i~d~~  133 (134)
                      .+. ++...+|.+  .+++...............|+|+|++++.. .+   ..|.+||+.
T Consensus       301 ~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        301 TSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             EecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence            554 455566654  444433322223334568899999988754 32   379999975

>KOG1539|consensus

Probab=99.56  E-value=7.2e-13  Score=87.65  Aligned_cols=129  Identities=10%  Similarity=0.182  Sum_probs=107.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE-EE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-IS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~   80 (134)
                      +.+||+++++.+.++++....++++.-+|--..++.|..+|.|.+++++.++.+ ..++...+.|+.++|.-||..+ ++
T Consensus       184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil-~sFk~d~g~VtslSFrtDG~p~las  262 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL-MSFKQDWGRVTSLSFRTDGNPLLAS  262 (910)
T ss_pred             EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE-EEEEccccceeEEEeccCCCeeEEe
Confidence            679999999999999977677777999998889999999999999999987654 4565446999999999999765 56


Q ss_pred             eeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++..|.+.+||+...+....+.  |.+.+....|.|....+++. .|+.+++|=
T Consensus       263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV  316 (910)
T ss_pred             ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence            6667999999999888777665  56788899999988888864 677766663

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.56  E-value=2e-12  Score=81.47  Aligned_cols=132  Identities=27%  Similarity=0.430  Sum_probs=101.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      ++++|+...++.+..+..+...+.+++|+|++. .+++++.|+.+++||...+......+.+|.... ...|+|++..++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  257 (466)
T COG2319         179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLA  257 (466)
T ss_pred             ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEE
Confidence            478999998888888886666666699999988 455558999999998875443322466777665 448999998888


Q ss_pred             EeeCCCcEEEEecCCCce-eEEE-ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAE-VQKL-EFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.|+.+++|+...... .... .+...+.++.|+|++..++++ .|+.+.+||.+
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence            999999999999987664 3333 356789999999977776654 56789999875

>KOG4227|consensus

Probab=99.56  E-value=1e-13  Score=85.33  Aligned_cols=116  Identities=20%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCC------CCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK------PDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      .+...++++.|+.++++|++|+.|..+++|.+..      ++++..+-..|...|.+++|....+++++|..++++.+.|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            4556777799999999999999999999999863      2333222344668999999999899999999999999999


Q ss_pred             cCCCceeEEEecC---CCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          92 VSASAEVQKLEFG---AVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        92 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +.+.+.+..+.+.   +.|..+..+|....+++ +.++.|.+||.+
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            9999988888764   48999999998776665 567999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.8e-12  Score=83.22  Aligned_cols=129  Identities=13%  Similarity=0.073  Sum_probs=86.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec---CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS---NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.++|...........+...... .+|+|||+.|+..+   .+..+.++++.++..  ..+....+.+....|+||++.|
T Consensus       181 l~~~d~dg~~~~~lt~~~~~~~~-p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        181 LRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             EEEEcCCCCCCEEeecCCCceee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCEE
Confidence            66778764444333334444445 99999999988653   345799999987542  2223334445678999999988


Q ss_pred             EEe-eCCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CC--eEEEEeCC
Q psy6446          79 ISC-AEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GS--CVTFLDAN  133 (134)
Q Consensus        79 ~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~d~~  133 (134)
                      +.. ..++  .|.+||+.+++..........+....|+|||+.|+...  ++  .|.++|+.
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~  319 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN  319 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence            754 4444  58899998877655444455678899999999887543  23  45555553

>KOG0649|consensus

Probab=99.55  E-value=1.1e-12  Score=76.16  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC---------CC-CCEeEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG---------HS-SGIKHVQF   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---------~~-~~v~~~~~   71 (134)
                      ++-||+++|+....++++...+.++.-......+++|+.||.+++||.++.+... ++..         |- ..|-+++.
T Consensus       138 ~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wigala~  216 (325)
T KOG0649|consen  138 IYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWIGALAV  216 (325)
T ss_pred             EEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE-EeccccChhhcCcccCceeEEEec
Confidence            5789999999999999777777767765556689999999999999999876542 2221         11 22444443


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                        +..+++.|+ ...+.+|.++..++...++.+..+..+.|..+ ..++.|..+.+.-|.+
T Consensus       217 --~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  217 --NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTL  273 (325)
T ss_pred             --cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeee
Confidence              566776654 45689999999999999998999999988754 3344444455555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=8.3e-13  Score=84.87  Aligned_cols=129  Identities=16%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+||...+.+.....+...+.. ..|+|+|+.|+..+.   +..+++|++.++..  ..+....+.....+|+||++.+
T Consensus       186 l~i~D~~g~~~~~lt~~~~~v~~-p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEPILS-PAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEECCCCCCceEeecCCCcccc-ccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCEE
Confidence            67888764444433335545555 999999999987763   34699999987543  2233444556688999999987


Q ss_pred             E-EeeCCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CC--eEEEEeCC
Q psy6446          79 I-SCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GS--CVTFLDAN  133 (134)
Q Consensus        79 ~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~d~~  133 (134)
                      + +.+.++  .|.+||+.+++......+.......+|+|||+.++.++  +|  .|.++|+.
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            5 445554  59999998877544333344456789999999887653  33  46666653

>KOG1523|consensus

Probab=99.54  E-value=2.8e-13  Score=81.07  Aligned_cols=130  Identities=10%  Similarity=0.154  Sum_probs=99.4

Q ss_pred             eeEeecCCCc---eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGE---ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      |.||......   ..+++..+...++.+.|+|..+.|.+++.|..-++|....+.  .+...+..+....+++.|+|.++
T Consensus        34 vhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en  113 (361)
T KOG1523|consen   34 VHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN  113 (361)
T ss_pred             EEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc
Confidence            4566655433   456677556666669999999999999999999999984432  22234567889999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEE-----EecCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQK-----LEFGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      .+++++..+.|.+|-+...+--..     .+..+.|.++.|+|++-++++| .|+..+++.
T Consensus       114 kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  114 KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            999999999999997765432211     1245778999999999988886 589888875

>KOG2106|consensus

Probab=99.53  E-value=8.1e-13  Score=83.42  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC--eEEeC-CCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP--TVYRG-HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l   78 (134)
                      +.+||++.+......+..+.++....|+|.+..++.....+.+.+|+++.+....  ..+.. .+..|.+++|.++++ +
T Consensus       182 lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-v  260 (626)
T KOG2106|consen  182 LSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-V  260 (626)
T ss_pred             cchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-E
Confidence            5689999988888888777787779999965555555556899999988754221  11222 236799999999887 5


Q ss_pred             EEeeCCCcEEEEecCCCceeEEE-ecCCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      +++..+|.|.+|+..+.+..+.. .|+..|.+++...+|.++..+.|..|..||
T Consensus       261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd  314 (626)
T KOG2106|consen  261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD  314 (626)
T ss_pred             EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc
Confidence            68999999999998776554443 478899999999999988856799999998

>KOG0642|consensus

Probab=99.52  E-value=1.6e-13  Score=87.09  Aligned_cols=119  Identities=17%  Similarity=0.246  Sum_probs=91.7

Q ss_pred             EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC-------CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcE
Q psy6446          15 SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP-------DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV   87 (134)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   87 (134)
                      ++..+...+.++.|.|....|++++.||.+.+|.++..       ..+...+.+|.++|.++.+.++++.+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            33434444555899998899999999999999999431       12345688999999999999999999999999999


Q ss_pred             EEEecCCCc------eeE-----EEecCCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          88 RLWDVSASA------EVQ-----KLEFGAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        88 ~~~d~~~~~------~~~-----~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +.|++....      -..     ...+...++.+++++....|+. +.||+++.|+..
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence            999765211      111     1225678899999998877765 479999999864

>KOG1524|consensus

Probab=99.52  E-value=8.3e-14  Score=88.51  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=65.4

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC-------------------------------------
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP-------------------------------------   52 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-------------------------------------   52 (134)
                      ++....+..+...+.|-.|+|+|.-|++++.||.|++|.-...                                     
T Consensus        94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL  173 (737)
T KOG1524|consen   94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPL  173 (737)
T ss_pred             chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeec
Confidence            3344444545556666999999999999999999999975310                                     


Q ss_pred             --CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          53 --DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        53 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                        .......+.|.+-|.+++|++..+.+++|++|-..++||-..
T Consensus       174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence              000113467999999999999999999999999999999654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.51  E-value=9.7e-12  Score=77.42  Aligned_cols=131  Identities=13%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             eeEeecC-CCce--eeEEeeCCCceeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCeEE--eCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAV-SGEE--LHSFQHPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVY--RGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~   75 (134)
                      |.+|++. +++.  +........... +.++|+++.+++++. ++.+.+|++++........  ..+......++++|++
T Consensus        59 i~~~~~~~~g~l~~~~~~~~~~~p~~-i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g  137 (330)
T PRK11028         59 VLSYRIADDGALTFAAESPLPGSPTH-ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN  137 (330)
T ss_pred             EEEEEECCCCceEEeeeecCCCCceE-EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC
Confidence            5678876 3432  222333334444 999999998887764 7899999997532221111  1222446778899999


Q ss_pred             CEEEEe-eCCCcEEEEecCCCceeE-------EEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          76 TRLISC-AEDKTVRLWDVSASAEVQ-------KLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~-~~d~~i~~~d~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++++++ ..++.|.+||+.+...+.       ..........+.|+|+|+++++.  .++.|.+||++
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            988654 456899999997633221       12234557889999999988765  37999999974

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.5e-12  Score=81.59  Aligned_cols=130  Identities=14%  Similarity=0.126  Sum_probs=87.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCe--EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKN--IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~--v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      .|++||+.+++............ ...|+|+|+.|+ +.+.++.  |+++|+.++..  ..+..+........|+||++.
T Consensus       227 ~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~  303 (435)
T PRK05137        227 RVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQ  303 (435)
T ss_pred             EEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCE
Confidence            37899998887643333443334 499999998875 4455554  77778876542  334455566778999999998


Q ss_pred             EEEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-C--CeEEEEeCC
Q psy6446          78 LISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-G--SCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~--~~i~i~d~~  133 (134)
                      ++..+. ++  .|.++|+..++...............|+|+|+.++.. . .  ..|.+||+.
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence            886653 33  5888887766554433334556678999999988764 2 2  468888863

>KOG0644|consensus

Probab=99.50  E-value=1.3e-14  Score=95.98  Aligned_cols=112  Identities=21%  Similarity=0.364  Sum_probs=97.1

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE   97 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   97 (134)
                      ++...+.|+.|...|.++++|+.|..++||.+.+..+. ....||.+.++.++.+.+...+++++.|..|++|.+.++.+
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhh-ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            34445556999999999999999999999998886655 46899999999999998888999999999999999999998


Q ss_pred             eEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          98 VQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        98 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +..+. |.+.|++++|+|-.   .++.||++++||.+
T Consensus       267 vsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence            88776 68899999999975   34568999999975

>KOG3881|consensus

Probab=99.50  E-value=3.1e-13  Score=82.60  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=99.5

Q ss_pred             CeeEeecCCC-ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSG-EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      .+++||.+.+ +++..+...+..++++...|.++.+++|...+.+..||++.+......+++..+.+.++..+|..++++
T Consensus       227 qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la  306 (412)
T KOG3881|consen  227 QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA  306 (412)
T ss_pred             eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence            3789999855 578999977777777999999999999999999999999998777666889999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD  115 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~  115 (134)
                      +++-|+.++|+|+.+.+.+......+..+++-+.++
T Consensus       307 s~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  307 SCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             eeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999777666666677777777554

>KOG2111|consensus

Probab=99.50  E-value=1.2e-11  Score=74.16  Aligned_cols=93  Identities=18%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             eeEeecCCCce--eeEEeeCCCceeeEEEccCCcEEEEecCCCe-EEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEE--LHSFQHPHIVKSSVHFATDSYRLATGSNDKN-IRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~   77 (134)
                      |.|-|+...+.  -..+..+...+.|++.+.+|..+|++|..|+ |+|||..++..+...-+|. ...+.+++|+|+..+
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW  240 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence            56777765554  2556656666777999999999999999996 6999999987665443443 357999999999999


Q ss_pred             EEEeeCCCcEEEEecCC
Q psy6446          78 LISCAEDKTVRLWDVSA   94 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~   94 (134)
                      |+.++.-|++++|.++.
T Consensus       241 LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  241 LAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEcCCCeEEEEEeec
Confidence            99999999999998875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=79.66  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++||+.+++............. ..|+|||+.|+.. +.+|  .|++||+.++..  ..+..+...+....|+||++.|
T Consensus       225 i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I  301 (429)
T PRK03629        225 LVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNL  301 (429)
T ss_pred             EEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEE
Confidence            67888887765443333333334 8999999988764 4444  588899887542  2333444567889999999988


Q ss_pred             EEeeCC-Cc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-C--CeEEEEeCC
Q psy6446          79 ISCAED-KT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-G--SCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~--~~i~i~d~~  133 (134)
                      +..+.+ +.  |.++|+.+++...............|+|||++++.. . +  ..|.+||++
T Consensus       302 ~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        302 AYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             EEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence            766653 44  555566666543332234455678999999988753 2 2  468888875

>KOG2321|consensus

Probab=99.49  E-value=9.3e-13  Score=84.28  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=104.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeE-----EeCCCC-----CEeEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-----YRGHSS-----GIKHVQF   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-----~~~~~~-----~v~~~~~   71 (134)
                      |+-+++..|..+..+......++++..++...+|++|+.+|.|..||.+........     ...|.+     .|+++.|
T Consensus       157 vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F  236 (703)
T KOG2321|consen  157 VYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF  236 (703)
T ss_pred             eEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe
Confidence            455677788888888877677888999998889999999999999999875433211     122333     4999999


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEec--CCCCeEEEEccC--CcEEEEecCCeEEEEeCC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRD--GTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~~~i~i~d~~  133 (134)
                      +.+|-.++.|..+|.+.+||+++.+++..-.|  ..+|..+.|.+.  +..+++.....++|||-.
T Consensus       237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~  302 (703)
T KOG2321|consen  237 RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDEC  302 (703)
T ss_pred             cCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccc
Confidence            99999999999999999999999998887776  467788888775  345666666889999853

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=3.1e-11  Score=76.03  Aligned_cols=131  Identities=12%  Similarity=0.141  Sum_probs=91.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|.+.|..+.+.+..++........+.|+|||+++++.+.||.|.++|+.+.+... ..+ ......++++++||+++++
T Consensus        17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~-~i~-~G~~~~~i~~s~DG~~~~v   94 (369)
T PF02239_consen   17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA-TIK-VGGNPRGIAVSPDGKYVYV   94 (369)
T ss_dssp             EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE-EEE--SSEEEEEEE--TTTEEEE
T ss_pred             EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE-EEe-cCCCcceEEEcCCCCEEEE
Confidence            36789999999999998554443337899999999999999999999999876443 333 2345788999999999886


Q ss_pred             ee-CCCcEEEEecCCCceeEEEecC--------CCCeEEEEccCCcEEE-EecC-CeEEEEeCC
Q psy6446          81 CA-EDKTVRLWDVSASAEVQKLEFG--------AVPNSLEISRDGTTIT-VTHG-SCVTFLDAN  133 (134)
Q Consensus        81 ~~-~d~~i~~~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~-~~~~-~~i~i~d~~  133 (134)
                      +. .++.+.++|.++.+.++.+...        ..+..+..+|....++ .-.+ +.|.+.|..
T Consensus        95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            64 6889999999999999887632        3456777788887444 4444 888888753

...

>KOG2139|consensus

Probab=99.48  E-value=3.1e-12  Score=77.98  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             eCCCceeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC-CC
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS-AS   95 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~   95 (134)
                      ++..+.+ +.|++||..+++++. |..|.+||..++...... .--.+.++-+.|+||+.+|+++.-|+..++|+.. +.
T Consensus       194 gh~pVts-mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w  271 (445)
T KOG2139|consen  194 GHNPVTS-MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW  271 (445)
T ss_pred             CCceeeE-EEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence            3444444 999999999998875 568999999987755432 2345778999999999999999999999999654 33


Q ss_pred             ceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          96 AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        96 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      ...+-....+.+...+|+|+|++++....|.=++|.
T Consensus       272 t~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lys  307 (445)
T KOG2139|consen  272 TKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYS  307 (445)
T ss_pred             eecceeccCCceeeeeecCCCCEEEEEEcCCceEEE
Confidence            333333345689999999999988765444444443

>KOG1523|consensus

Probab=99.48  E-value=5.7e-12  Score=75.60  Aligned_cols=119  Identities=13%  Similarity=0.281  Sum_probs=94.1

Q ss_pred             EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          15 SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      .+......+.|.+|++|++.++++.....+.||......  ....++..|...|+.++|+|..+.|++++.|..-.+|..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            343334456669999999999999999999999987654  344567889999999999999999999999999999988


Q ss_pred             C-CCce---eEEEecCCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          93 S-ASAE---VQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        93 ~-~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      . .++-   +..+.......++.|+|.+..+++++ ...|.+|-++
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            4 3332   22334678899999999999888875 4677776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=1.8e-11  Score=78.42  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=86.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEE-ecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++||+.+++............. +.|+|+++.|+. .+.++  .+++|++.++..  ..+..+........|+|+++.|
T Consensus       216 i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l  292 (417)
T TIGR02800       216 IYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSI  292 (417)
T ss_pred             EEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEE
Confidence            78899988766544334433444 899999987764 44444  588888876532  2333444455677899999988


Q ss_pred             EEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCC---eEEEEeCC
Q psy6446          79 ISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGS---CVTFLDAN  133 (134)
Q Consensus        79 ~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~---~i~i~d~~  133 (134)
                      +..+. ++  .|.++|+.+++.............+.|+|+|++++.+ .++   .|.+||+.
T Consensus       293 ~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       293 AFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            76554 33  5778888776654433345566788999999988865 333   78888875

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.4e-11  Score=78.17  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.++|...+.......+...+.. ..|+|+|+.|+..+.+   ..|.+|++.++...  .+....+......|+||++.+
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~~-p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--~l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPILS-PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--QITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEECCCCCCceEEecCCCceee-eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--EccCCCCCcCCeEECCCCCEE
Confidence            55667664444333345444455 9999999998776543   36889999875432  233334455678999999988


Q ss_pred             E-EeeCCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--C--CeEEEEeCC
Q psy6446          79 I-SCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--G--SCVTFLDAN  133 (134)
Q Consensus        79 ~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~d~~  133 (134)
                      + +...++  .|.++|+.+++...............|+|||+.++...  +  ..|+++|+.
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            7 444444  58888998876554333444556789999998776542  2  367777764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.4e-11  Score=78.22  Aligned_cols=129  Identities=17%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEE-ecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++||+.+++......... ...+..|+|+|+.++. .+.+|  .|++||+.++..  ..+..+.......+|+||++.+
T Consensus       230 l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l  306 (433)
T PRK04922        230 IYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSI  306 (433)
T ss_pred             EEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEE
Confidence            6789998777644333333 3334899999998764 44454  689999887542  2344455556788999999988


Q ss_pred             EEeeC-CCc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cC---CeEEEEeCC
Q psy6446          79 ISCAE-DKT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG---SCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---~~i~i~d~~  133 (134)
                      +..+. ++.  +.++|+.+++..............+|+|+|+.++.. .+   ..|.+||+.
T Consensus       307 ~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        307 YFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             EEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            86653 444  666677666544333333445578999999988764 22   368999975

>KOG0322|consensus

Probab=99.45  E-value=4.3e-13  Score=78.54  Aligned_cols=75  Identities=25%  Similarity=0.391  Sum_probs=65.7

Q ss_pred             eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          17 QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      +-.+..++-+...||++.+++++.|+.+++|..++...+ ..++-|...|++++|+|+...+++++.|+.|.+|++
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            334444555889999999999999999999999997654 578899999999999999999999999999999986

>KOG0650|consensus

Probab=99.45  E-value=1.7e-11  Score=79.03  Aligned_cols=131  Identities=16%  Similarity=0.225  Sum_probs=95.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCc--EEEEecCCCeEEEEECCCCC-------------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSY--RLATGSNDKNIRIYDLNKPD-------------------------   53 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~-------------------------   53 (134)
                      ||+||.+.+|.+++++.....+.+ ++|+|.+.  .|+++... .+.+-+..-+.                         
T Consensus       423 tvriWEi~TgRcvr~~~~d~~I~~-vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~  500 (733)
T KOG0650|consen  423 TVRIWEIATGRCVRTVQFDSEIRS-VAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV  500 (733)
T ss_pred             cEEEEEeecceEEEEEeecceeEE-EEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccce
Confidence            689999999999999987765555 99999654  34444333 24443321110                         


Q ss_pred             -----------CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC---CcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcE
Q psy6446          54 -----------AEPTVYRGHSSGIKHVQFFKNNTRLISCAED---KTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT  118 (134)
Q Consensus        54 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~  118 (134)
                                 .-....-.|...|.++.|+..|.+|++...+   ..|.|.++...+....+. ..+.+.++.|+|...+
T Consensus       501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence                       0001223467889999999999999987664   468999988776655553 4678999999999999


Q ss_pred             EEEecCCeEEEEeCC
Q psy6446         119 ITVTHGSCVTFLDAN  133 (134)
Q Consensus       119 l~~~~~~~i~i~d~~  133 (134)
                      ++++....|++||+.
T Consensus       581 lfVaTq~~vRiYdL~  595 (733)
T KOG0650|consen  581 LFVATQRSVRIYDLS  595 (733)
T ss_pred             EEEEeccceEEEehh
Confidence            999999999999974

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.2e-11  Score=79.42  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=79.6

Q ss_pred             eeEeecCCCceeeEE-eeCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSF-QHPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |.++|.. +.....+ .+...+.. .+|+|+|+.|+..+.+   ..|.+||+.++...  .+....+......|+||++.
T Consensus       178 L~~~D~d-G~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        178 LQISDAD-GQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEECCC-CCCceEeccCCCCccc-ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCE
Confidence            4566654 4443333 34444445 9999999998876542   46999999876532  23334456678999999998


Q ss_pred             EE-EeeCCCcEEEEe--cCCCceeEEEe-cCCCCeEEEEccCCcEEEEec--CCeEEEEe
Q psy6446          78 LI-SCAEDKTVRLWD--VSASAEVQKLE-FGAVPNSLEISRDGTTITVTH--GSCVTFLD  131 (134)
Q Consensus        78 l~-~~~~d~~i~~~d--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~d  131 (134)
                      ++ +.+.++...+|.  ...+.. ..+. .........|+|||+.++..+  ++...+|.
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            86 556677655554  444443 3333 333456788999999877543  35445553

>KOG0974|consensus

Probab=99.44  E-value=3.6e-12  Score=85.89  Aligned_cols=127  Identities=21%  Similarity=0.351  Sum_probs=98.9

Q ss_pred             eeEeecC-CCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAV-SGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |.+|+.. +..++ .+. |.+.++. +.++-+|.++++.|.|..+++|++.+.+......-+|...+.++.|.|+  .++
T Consensus       157 iivW~~~~dn~p~-~l~GHeG~iF~-i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~  232 (967)
T KOG0974|consen  157 IIVWKPHEDNKPI-RLKGHEGSIFS-IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII  232 (967)
T ss_pred             EEEEeccccCCcc-eecccCCceEE-EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence            5678876 23334 344 5555555 9999999999999999999999999977666566789999999999988  999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-c-CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-F-GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++|-+.++|+... .....+. | ...+..++..++....+++ .|+.+++||+.
T Consensus       233 t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            999999999996543 3333333 2 4568889988887777765 68999999874

>KOG2445|consensus

Probab=99.44  E-value=3.2e-11  Score=72.21  Aligned_cols=131  Identities=17%  Similarity=0.233  Sum_probs=91.0

Q ss_pred             CeeEeecCCCc----eeeEEe-eCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCC--------CCeEEeCCCCC
Q psy6446           1 MGTVWDAVSGE----ELHSFQ-HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDA--------EPTVYRGHSSG   65 (134)
Q Consensus         1 ~i~v~d~~~~~----~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~--------~~~~~~~~~~~   65 (134)
                      +|.|||..+..    +....+ |...+.. +.|-+  -|+.+++++.|+.+.||.-.....        ....+...++.
T Consensus        36 ~vkI~d~~~~s~~W~~Ts~Wrah~~Si~r-V~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss  114 (361)
T KOG2445|consen   36 TVKIWDSTSDSGTWSCTSSWRAHDGSIWR-VVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS  114 (361)
T ss_pred             cEEEEeccCCCCceEEeeeEEecCCcEEE-EEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc
Confidence            57899965332    344455 4555555 88865  689999999999999998632111        11234566789


Q ss_pred             EeEEEEee--CCCEEEEeeCCCcEEEEecCCCceeEEE------e--------cCCCCeEEEEccCC---cEEEEecCC-
Q psy6446          66 IKHVQFFK--NNTRLISCAEDKTVRLWDVSASAEVQKL------E--------FGAVPNSLEISRDG---TTITVTHGS-  125 (134)
Q Consensus        66 v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~--------~~~~v~~~~~~~~~---~~l~~~~~~-  125 (134)
                      |+.++|.|  -|-.+++++.||.++||+....-.+...      .        +..+..|+.|+|..   +++++|.+. 
T Consensus       115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~  194 (361)
T KOG2445|consen  115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED  194 (361)
T ss_pred             eeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccC
Confidence            99999999  5778899999999999987654332222      1        23456799999753   578877554 


Q ss_pred             -----eEEEEeC
Q psy6446         126 -----CVTFLDA  132 (134)
Q Consensus       126 -----~i~i~d~  132 (134)
                           .+.||..
T Consensus       195 a~~~~~~~Iye~  206 (361)
T KOG2445|consen  195 APHLNKVKIYEY  206 (361)
T ss_pred             CccccceEEEEe
Confidence                 8888864

>KOG1538|consensus

Probab=99.43  E-value=6.4e-13  Score=86.74  Aligned_cols=99  Identities=16%  Similarity=0.308  Sum_probs=82.3

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK  100 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  100 (134)
                      .+.. ++|.|||..|+.+.. ..+.+||.+.+... ..+++|...|.+++|+.||+.+++|+.|..+.+|..+ .+-...
T Consensus        14 ci~d-~afkPDGsqL~lAAg-~rlliyD~ndG~ll-qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk   89 (1081)
T KOG1538|consen   14 CIND-IAFKPDGTQLILAAG-SRLLVYDTSDGTLL-QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK   89 (1081)
T ss_pred             chhe-eEECCCCceEEEecC-CEEEEEeCCCcccc-cccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence            4445 999999999888754 57999999987754 6789999999999999999999999999999999753 344455


Q ss_pred             EecCCCCeEEEEccCCcEEEEec
Q psy6446         101 LEFGAVPNSLEISRDGTTITVTH  123 (134)
Q Consensus       101 ~~~~~~v~~~~~~~~~~~l~~~~  123 (134)
                      ..|...|.|+.|+|-...+++++
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCs  112 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCS  112 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcc
Confidence            66888999999999887777653

>KOG0974|consensus

Probab=99.43  E-value=1.4e-11  Score=83.20  Aligned_cols=129  Identities=16%  Similarity=0.213  Sum_probs=101.7

Q ss_pred             eeEeecCCCceeeEEeeCCCce--ee--EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVK--SS--VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +.+||...+.....+.+.+...  ++  +.++++.-++++|+--+.+.+|+......+ ..+.+|.+.+..+.++.|+++
T Consensus       111 ~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~i~~s~dg~~  189 (967)
T KOG0974|consen  111 LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFSIVTSLDGRY  189 (967)
T ss_pred             EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-ceecccCCceEEEEEccCCcE
Confidence            5677877766666666544432  11  445667778899999999999999854444 367899999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCceeE--EEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQ--KLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      +++++.|+++++|++.+.+...  .+.|...+..++|+|+ ..+..+.|-+.++|+.
T Consensus       190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGV  245 (967)
T ss_pred             EEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEec
Confidence            9999999999999999887665  4557889999999999 5555578999999954

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=5.9e-11  Score=76.06  Aligned_cols=129  Identities=17%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.++|...+.......+...+.. ..|+|+|+.|+....+   ..+++|++.++..  ..+..+.+.+..+.|+|+++.|
T Consensus       172 l~~~d~~g~~~~~l~~~~~~~~~-p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREPILS-PAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCceec-ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCCEE
Confidence            56777654443333334434444 8999999999876543   4799999987543  2334455667789999999877


Q ss_pred             EE-eeCCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--C--CeEEEEeCC
Q psy6446          79 IS-CAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--G--SCVTFLDAN  133 (134)
Q Consensus        79 ~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~d~~  133 (134)
                      +. .+.++  .|.+||+.+++......+........|+|+|+.++...  +  ..|.++|+.
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~  310 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD  310 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence            64 44443  58889988776544433444455789999998877542  2  367777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240|consensus

Probab=99.41  E-value=8.2e-12  Score=85.88  Aligned_cols=124  Identities=17%  Similarity=0.281  Sum_probs=89.2

Q ss_pred             CCceeeEEe-eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC------CeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           9 SGEELHSFQ-HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE------PTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         9 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .|..++.+. |...+.. ++.++ ++.++++|+.||.|++|+.+.....      ...+......+..+.+.+.++.++.
T Consensus      1037 ~G~lVAhL~Ehs~~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             cceEeehhhhccccccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            367777776 6555665 66665 5599999999999999998763211      1123334577888999999999999


Q ss_pred             eeCCCcEEEEecCCCce-------------------e----------------------------------EEEe---cC
Q psy6446          81 CAEDKTVRLWDVSASAE-------------------V----------------------------------QKLE---FG  104 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~-------------------~----------------------------------~~~~---~~  104 (134)
                      ++.||.|.+.++.....                   +                                  ..++   ..
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            99999999887754100                   0                                  0000   12


Q ss_pred             CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         105 AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +.|++++.+|.+.++++| ..|.+.+||++
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEee
Confidence            467889999999999988 56999999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=8.8e-11  Score=75.91  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.++|...............+.. ..|+|||+.|+..+.+   ..|+++|+.++...  .+....+......|+||++.|
T Consensus       200 l~i~d~dG~~~~~l~~~~~~~~~-p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        200 LMIADYDGYNEQMLLRSPEPLMS-PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEeCCCCCceEeecCCCcccC-ceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEE
Confidence            34556543333222334444444 9999999998876432   36888898775432  222233444578999999988


Q ss_pred             EE-eeCCCc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--C--CeEEEEeCC
Q psy6446          79 IS-CAEDKT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--G--SCVTFLDAN  133 (134)
Q Consensus        79 ~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~d~~  133 (134)
                      +. ...++.  |.++|+.+++...............|+|||+.++...  +  ..|.++|++
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~  338 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA  338 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            64 455554  7888888776544333444567789999999887542  2  357666764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.6e-10  Score=74.27  Aligned_cols=130  Identities=13%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             EeecCC---CceeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEE--ECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           4 VWDAVS---GEELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIY--DLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         4 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +||+.+   ++................|+|||+.|+..+ .+|...+|  ++.........+..+...+....|+|||+.
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence            356554   233333333323333489999999877654 45644444  443222222334444456778999999999


Q ss_pred             EEEeeCC---CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c---CCeEEEEeCC
Q psy6446          78 LISCAED---KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H---GSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~~~i~i~d~~  133 (134)
                      |+..+.+   ..|.+||+.+++..........+....|+|||+.|+.. .   ...|.++|+.
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            8866543   36899999888765443334456789999999887743 2   3578888864

>KOG4547|consensus

Probab=99.38  E-value=9e-11  Score=75.15  Aligned_cols=128  Identities=9%  Similarity=0.074  Sum_probs=104.3

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      .|.+|+...|+..+.+.  .+...+.++.++.+-..|.+++.|..+..|+..... ......+....+.+++.+||+..+
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEE
Confidence            36788999999888886  344455558888888999999999999999998754 456677888899999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccC-----CcEEEEec--CCeEEEEe
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRD-----GTTITVTH--GSCVTFLD  131 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~l~~~~--~~~i~i~d  131 (134)
                      ++++  ++|++||+.+.+.+..+. |.++|+++.|-.+     |.+++++.  +.-+.+|-
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            9887  579999999999999998 5789999999876     67777653  34555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.5e-10  Score=73.57  Aligned_cols=130  Identities=16%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEE-ecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+||+.+++.......... .....|+|+|+.|+. .+.++  .|+++|+.++..  ..+..+........|+||++.+
T Consensus       225 l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i  301 (430)
T PRK00178        225 IFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTL  301 (430)
T ss_pred             EEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEE
Confidence            67888887765443322322 334899999998874 44444  688889887542  2344455566778999999988


Q ss_pred             EEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-CC--eEEEEeCCC
Q psy6446          79 ISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-GS--CVTFLDANS  134 (134)
Q Consensus        79 ~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~~--~i~i~d~~t  134 (134)
                      +..+. ++  .|.++|+.+++...............|+|+|+.++.. . ++  .|.++|+.+
T Consensus       302 ~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        302 YFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            75553 33  5777788777654333223334567899999988764 2 33  688888753

>KOG3914|consensus

Probab=99.35  E-value=5.2e-12  Score=77.49  Aligned_cols=98  Identities=22%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA   82 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (134)
                      .+|....+.+...+.|-..... ++|+||+++|+++.+|..|++-.+.........+.||..-|..++.-++ +.|++++
T Consensus       135 di~s~~~~~~~~~lGhvSml~d-VavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s  212 (390)
T KOG3914|consen  135 DILSADSGRCEPILGHVSMLLD-VAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS  212 (390)
T ss_pred             eeecccccCcchhhhhhhhhhe-eeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC
Confidence            3444444555545545555555 9999999999999999999998776655555567799999999998754 4589999


Q ss_pred             CCCcEEEEecCCCceeEEEe
Q psy6446          83 EDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        83 ~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .|+++++||+.+++++..+.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999999876554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=4e-10  Score=72.90  Aligned_cols=129  Identities=17%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEE-ecCCCe--EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDKN--IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |++||+.+++.......... .....|+|+|+.|+. .+.++.  |+++|+.++..  ..+..+........|+||++.+
T Consensus       244 L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        244 IFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             EEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe--EECccCCCCccceEECCCCCEE
Confidence            67888887765433222222 234899999998865 455564  77778876432  2334455566788999999988


Q ss_pred             EEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-CC--eEEEEeCC
Q psy6446          79 ISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-GS--CVTFLDAN  133 (134)
Q Consensus        79 ~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~~--~i~i~d~~  133 (134)
                      +..+. ++  .|.++|+.+++..............+|+|||++++.. . ++  .|.++|+.
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence            75543 33  4667777777654432233334567899999888754 2 33  56666764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=1.1e-10  Score=73.56  Aligned_cols=101  Identities=17%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             cEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEE
Q psy6446          33 YRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE  111 (134)
Q Consensus        33 ~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~  111 (134)
                      +++ ++-..++.|.+.|..+.+.. ..+......-..+.++||+++++..+.|+.+.++|+.+.+.+..+.......+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~-~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV-ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE-EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE-EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence            444 45566899999999885543 3444333334557899999999999999999999999999999999888889999


Q ss_pred             EccCCcEEEEe--cCCeEEEEeCCC
Q psy6446         112 ISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus       112 ~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      +++||++++++  ..+.+.++|.+|
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT
T ss_pred             EcCCCCEEEEEecCCCceeEecccc
Confidence            99999998876  469999999865

...

>KOG1587|consensus

Probab=99.33  E-value=2.9e-10  Score=74.45  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=90.8

Q ss_pred             eeEeecCCC-ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC-----CeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSG-EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE-----PTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~   74 (134)
                      +.+|++... .+...+.....+.+ +.|+| +.+.++.|..+|+|.+||++.+...     ......|..++..+.|..+
T Consensus       224 ~~vW~~~~p~~Pe~~~~~~s~v~~-~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLESPSEVTC-LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             EEEEecCCCCCceEEEecCCceeE-EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            679999865 56666666666555 99999 7788899999999999999876542     1223468889999999774


Q ss_pred             C--CEEEEeeCCCcEEEEecCCCceeEEE------e-------cCCCCeEEEEccCC--cEEEEecCCeEEE
Q psy6446          75 N--TRLISCAEDKTVRLWDVSASAEVQKL------E-------FGAVPNSLEISRDG--TTITVTHGSCVTF  129 (134)
Q Consensus        75 ~--~~l~~~~~d~~i~~~d~~~~~~~~~~------~-------~~~~v~~~~~~~~~--~~l~~~~~~~i~i  129 (134)
                      .  .-+++++.||.|..|+++.-......      .       ....+.+++|.+..  .+++.+.+|.|..
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            4  44899999999999988754331111      1       12356889998865  3444446687765

>KOG1587|consensus

Probab=99.33  E-value=2.4e-11  Score=79.37  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=85.1

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-CCEEEEeeCCCcEEEEecCCCc--
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-NTRLISCAEDKTVRLWDVSASA--   96 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~--   96 (134)
                      ...+.++.++|-+..++..+.|..+++|.......+...+..+...+++++|||. ...++++..||.+.+||+....  
T Consensus       398 ~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  398 IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence            3444459999966666555559999999987444455556677778999999994 5667888899999999997544  


Q ss_pred             eeEEEec-CCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          97 EVQKLEF-GAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        97 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      +...... ......+.|+++|+.+++|. .|++++|++.
T Consensus       478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            3333332 34557788899999999985 5999999974

>KOG1310|consensus

Probab=99.32  E-value=9e-12  Score=79.75  Aligned_cols=131  Identities=22%  Similarity=0.300  Sum_probs=97.2

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCC---------CCCCCeEEeCCCCCEeEE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNK---------PDAEPTVYRGHSSGIKHV   69 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~---------~~~~~~~~~~~~~~v~~~   69 (134)
                      +.|||....+++..+. ++..-+.++.|-|  +.+.+++|..|..|+++|+..         .......+..|...|..+
T Consensus        74 ~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri  153 (758)
T KOG1310|consen   74 LIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI  153 (758)
T ss_pred             EEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhe
Confidence            5799999889988887 4444444499988  556788999999999999984         223334566788899999


Q ss_pred             EEeeCC-CEEEEeeCCCcEEEEecCCCcee-EE--Ee------c--CCCCeEEEEccCC-cEEEEe-cCCeEEEEeC
Q psy6446          70 QFFKNN-TRLISCAEDKTVRLWDVSASAEV-QK--LE------F--GAVPNSLEISRDG-TTITVT-HGSCVTFLDA  132 (134)
Q Consensus        70 ~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~-~~--~~------~--~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~  132 (134)
                      +-.|++ ..+.++++||+++-+|++....- ..  ..      +  --...|+..+|.. .++++| ++-..++||.
T Consensus       154 a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  154 ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            999987 77889999999999999863211 11  10      1  1234688999976 456666 5678888884

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=7.3e-10  Score=71.33  Aligned_cols=132  Identities=13%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC-CC--eE--EEEECCCC--CCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN-DK--NI--RIYDLNKP--DAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~v--~i~~~~~~--~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      |.+.++.+++............. ..|+|||+.|+..+. +|  .+  ..|++..+  ...........+.....+|+||
T Consensus       213 I~~~~l~~g~~~~lt~~~g~~~~-p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD  291 (428)
T PRK01029        213 IFLGSLENPAGKKILALQGNQLM-PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD  291 (428)
T ss_pred             EEEEECCCCCceEeecCCCCccc-eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC
Confidence            56677776665443333333344 899999998876543 23  23  33666542  1222222233334567899999


Q ss_pred             CCEEEEee-CCCcEEEE--ecCC-CceeEEEe-cCCCCeEEEEccCCcEEEEe-c---CCeEEEEeCCC
Q psy6446          75 NTRLISCA-EDKTVRLW--DVSA-SAEVQKLE-FGAVPNSLEISRDGTTITVT-H---GSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~-~d~~i~~~--d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~---~~~i~i~d~~t  134 (134)
                      |+.|+..+ .++...+|  ++.. +.....+. ....+....|+|||+.|+.. .   ...|.+||+.+
T Consensus       292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            99887654 45654455  4432 22233333 23456788999999988754 2   24799999753

>KOG3914|consensus

Probab=99.30  E-value=1.4e-10  Score=71.44  Aligned_cols=107  Identities=11%  Similarity=0.191  Sum_probs=77.8

Q ss_pred             EEEccCCcEEEEecCCC---eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          26 VHFATDSYRLATGSNDK---NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      +.|..+......+...|   .+.+|....+..  ....+|-.-+.+++++||+++++++..|..|++-.......+..+.
T Consensus       113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~--~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  113 ISFIREDTSVLVADKAGDVYSFDILSADSGRC--EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             eeeeeccceEEEEeecCCceeeeeecccccCc--chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            55555555555444444   444444443332  3456899999999999999999999999999998877665555444


Q ss_pred             --cCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446         103 --FGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus       103 --~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                        |..-|..++.-++..++.+|+|++|++||+++
T Consensus       191 lGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             cccHhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence              67789999988776655567899999999864

>KOG4227|consensus

Probab=99.30  E-value=2.3e-10  Score=71.01  Aligned_cols=131  Identities=15%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             eeEeecC------CCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CCCCCEeEEEEe
Q psy6446           2 GTVWDAV------SGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~   72 (134)
                      +++|++.      +.+++.... ++..-+.|++|+...+++++|..+++|...|+.+.+.+. .+.  ...+.|..+..+
T Consensus        80 ~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~-V~~~~~~~~~VY~m~~~  158 (609)
T KOG4227|consen   80 GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY-VANENNNRGDVYHMDQH  158 (609)
T ss_pred             eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee-eecccCcccceeecccC
Confidence            4688873      346666555 343455559999989999999999999999999865432 222  234589999999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCc-ee---EEEecCCCCeEEEEccCCcEEE-Ee-cCCeEEEEeCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASA-EV---QKLEFGAVPNSLEISRDGTTIT-VT-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~-~~---~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~d~~  133 (134)
                      |..+.+++.+.++.+.+||.+... +.   .....+.....+.|+|....|+ +. ..+.+-+||.+
T Consensus       159 P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  159 PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence            999999999999999999998755 22   2222456678899999876544 43 45888899976

>KOG4714|consensus

Probab=99.30  E-value=2.8e-11  Score=71.02  Aligned_cols=72  Identities=21%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             eeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEecCC
Q psy6446          23 KSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        23 ~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      +.+++-+| +...+++|+.||.+-+||.+....+...++.|+.++..+-|+| ++..|+++++||.+..||-.+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            55578788 4566788899999999999998777777899999999999999 788999999999999999763

>KOG2321|consensus

Probab=99.30  E-value=1.1e-10  Score=75.15  Aligned_cols=129  Identities=15%  Similarity=0.275  Sum_probs=97.1

Q ss_pred             eeEeecCCCceeeEEeeCC-----------CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPH-----------IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~   70 (134)
                      |..||.++...+..+....           ..++++.|+.+|-.+++|..+|.+.|||++...+....-.+..-+|..+.
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            6789998877776665221           23566999999999999999999999999997665433334456789999


Q ss_pred             EeeC--CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          71 FFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        71 ~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      |.+.  +..+++. ....++|||-.+|+....+.....++.+++-|++-.++.+ .+..+..|-
T Consensus       279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  279 WQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY  341 (703)
T ss_pred             ccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence            9875  3344433 3357999999999999988888889999999998777766 445555553

>KOG2315|consensus

Probab=99.29  E-value=8.3e-10  Score=70.72  Aligned_cols=126  Identities=12%  Similarity=0.136  Sum_probs=88.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe--cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG--SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +++++++..++.-.+...+++ .++.|+|+++.+++.  -.-..+.++|++-.  +  .+.--.++-+++-|+|.|++++
T Consensus       253 Lyll~t~g~s~~V~L~k~GPV-hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~--v~df~egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLLKEGPV-HDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--P--VFDFPEGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             EEEEEecCceEEEecCCCCCc-eEEEECCCCCEEEEEEecccceEEEEcCCCC--E--eEeCCCCCccceEECCCCCEEE
Confidence            455555533344444444444 459999999887664  44568999998752  2  2333557778999999999988


Q ss_pred             EeeC---CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--c-----CCeEEEEeCC
Q psy6446          80 SCAE---DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--H-----GSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~---d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-----~~~i~i~d~~  133 (134)
                      .++-   .|.+-+||..+.+++..+.... .+-..|+|||++++++  .     |+.++||+..
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            6654   4789999999977777665432 3567899999988864  2     6889999863

>KOG4497|consensus

Probab=99.29  E-value=3.1e-10  Score=68.87  Aligned_cols=128  Identities=18%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+|++...+-...++.....++++.|+|+|+.|+ +...+-.|.+|.+.+....  .+......+..++|+|+|++.+.
T Consensus        73 vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   73 VQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             EEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCceeee
Confidence            67899887777777775555555699999997665 5556889999999985533  22333455688999999998876


Q ss_pred             eeCCC------------------------------------cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c
Q psy6446          81 CAEDK------------------------------------TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H  123 (134)
Q Consensus        81 ~~~d~------------------------------------~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  123 (134)
                      .++..                                    .+.+||---.-.+.....+-.+..++|+|.++++++| .
T Consensus       151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence            65421                                    1122221111111122223456788899999999887 5


Q ss_pred             CCeEEEEe
Q psy6446         124 GSCVTFLD  131 (134)
Q Consensus       124 ~~~i~i~d  131 (134)
                      |+.+++.|
T Consensus       231 D~~lrvln  238 (447)
T KOG4497|consen  231 DQMLRVLN  238 (447)
T ss_pred             chhhhhhc
Confidence            77777654

>KOG1517|consensus

Probab=99.28  E-value=1.6e-10  Score=79.05  Aligned_cols=130  Identities=12%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             CeeEeecCCCc---eeeEEe-eCCC--ceeeEEEccCCc-EEEEecCCCeEEEEECCCCC-CCCeEEeCCC--C-CEeEE
Q psy6446           1 MGTVWDAVSGE---ELHSFQ-HPHI--VKSSVHFATDSY-RLATGSNDKNIRIYDLNKPD-AEPTVYRGHS--S-GIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~~~---~~~~~~-~~~~--~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~--~-~v~~~   69 (134)
                      +|++||.+...   .+...+ |...  ++. +.+.+.|- .|++|+.+|.|++||++... ........|.  + ..+++
T Consensus      1232 svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~-~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYREHNDVEPIVH-LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred             ceEEeecccCCccccceeecccCCccccee-EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceee
Confidence            47899987443   344454 4433  666 88888654 49999999999999999842 1111122222  3 59999


Q ss_pred             EEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          70 QFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--------FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        70 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..+++...+++|+. +.|+||++...+ +..+.        ....+.|++|+|....+++| .|..|.+|..+
T Consensus      1311 ~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             eeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            99999999999998 899999986433 22222        12457899999998888887 57999999754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.24  E-value=1e-09  Score=69.64  Aligned_cols=117  Identities=12%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +-|||..+++.....+.-+.+.. +..+++|+.++++.....+.+.|+.++... ..-+...+-|+...|+|++++++-+
T Consensus       384 l~iyd~~~~e~kr~e~~lg~I~a-v~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYa  461 (668)
T COG4946         384 LGIYDKDGGEVKRIEKDLGNIEA-VKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYA  461 (668)
T ss_pred             EEEEecCCceEEEeeCCccceEE-EEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEe
Confidence            56888877765544445555555 999999999999999999999999987643 3345566889999999999999987


Q ss_pred             eCCC----cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE
Q psy6446          82 AEDK----TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT  120 (134)
Q Consensus        82 ~~d~----~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  120 (134)
                      -.+|    .|+++|+.+++..........-.+-+|.|++++|.
T Consensus       462 fP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         462 FPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             cCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            7665    58999999888877666566667889999998765

>KOG4532|consensus

Probab=99.24  E-value=3.6e-09  Score=62.72  Aligned_cols=112  Identities=15%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-e-EEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-T-VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK  100 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  100 (134)
                      ...+..+++++++++.+....|..|.++...... . ........-.+..|+.....++++..||++.+||++.......
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            4449999999999999999999999987644322 2 1223344557888999899999999999999999987543332


Q ss_pred             Ee------cCCCCeEEEEccCCc--EEEEec-CCeEEEEeCCC
Q psy6446         101 LE------FGAVPNSLEISRDGT--TITVTH-GSCVTFLDANS  134 (134)
Q Consensus       101 ~~------~~~~v~~~~~~~~~~--~l~~~~-~~~i~i~d~~t  134 (134)
                      ..      +.+.++.+.|++-|.  +|+.+. -+.+++.|+++
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            21      567899999998774  555564 48899998874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.22  E-value=3.9e-09  Score=68.23  Aligned_cols=119  Identities=16%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             eeEEeeCCCceeeEEEcc-CCcEEEEe----cCCCe----EEEEECCCCCC--CCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446          13 LHSFQHPHIVKSSVHFAT-DSYRLATG----SNDKN----IRIYDLNKPDA--EPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~-~~~~l~~~----~~d~~----v~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +..++.+...+. +.|+. +++.+.+.    +.+|.    -++|+....+.  ....--..+..+.+.+++|+...++.|
T Consensus       199 L~yirTE~dPl~-~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlG  277 (545)
T PF11768_consen  199 LSYIRTENDPLD-VEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLG  277 (545)
T ss_pred             EEEEEecCCcEE-EEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEE
Confidence            333445556666 88887 45555543    33443    34566544321  111122466789999999999999999


Q ss_pred             eCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecC-CeEEEEeCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDAN  133 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~~  133 (134)
                      ..||.|.+||...+.... ....-.+..++|+|+|..++++++ |.+.+||+.
T Consensus       278 C~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  278 CEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            999999999987653332 244566789999999999888755 999999973

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.22  E-value=1.2e-10  Score=49.90  Aligned_cols=39  Identities=31%  Similarity=0.536  Sum_probs=34.7

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEE
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYD   48 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~   48 (134)
                      ++++..++++...+.+++|+|+++.|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467888997777777799999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.21  E-value=7.5e-11  Score=50.55  Aligned_cols=36  Identities=36%  Similarity=0.668  Sum_probs=33.7

Q ss_pred             CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe
Q psy6446          56 PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      ...+.+|.+.|.+++|+|+++.+++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547|consensus

Probab=99.21  E-value=4e-09  Score=67.87  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=102.0

Q ss_pred             eeEeecCCCceeeEEe---eCCCceeeEEEcc--------------------CCcEEEEecCCCeEEEEECCCCCCCCeE
Q psy6446           2 GTVWDAVSGEELHSFQ---HPHIVKSSVHFAT--------------------DSYRLATGSNDKNIRIYDLNKPDAEPTV   58 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~--------------------~~~~l~~~~~d~~v~i~~~~~~~~~~~~   58 (134)
                      +++||...++....|.   +......+..|.-                    +-..++-|...|.|.+|+...++.....
T Consensus        17 l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~   96 (541)
T KOG4547|consen   17 LRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL   96 (541)
T ss_pred             EEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE
Confidence            7899999998877775   2222222244431                    2235778888999999999887644333


Q ss_pred             E-eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          59 Y-RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        59 ~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      . ..|.+.|.++.++.+-..|.+++.|..+..|+....+.++.... ...+.+++.+|||..++++ .++|.+||+++
T Consensus        97 st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~  173 (541)
T KOG4547|consen   97 STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA-SRQIKVLDIET  173 (541)
T ss_pred             ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec-cceEEEEEccC
Confidence            2 47899999999998889999999999999999999998888875 4567899999998877664 47899999874

>KOG0644|consensus

Probab=99.20  E-value=7.2e-12  Score=83.47  Aligned_cols=87  Identities=25%  Similarity=0.447  Sum_probs=76.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      ++||.+.++.++..+.++..-++-++.+.+..++++++.|..|++|.+..+.. ...+.+|.+.|++++|+|-.    +.
T Consensus       214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p-vsvLrghtgavtaiafsP~~----ss  288 (1113)
T KOG0644|consen  214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP-VSVLRGHTGAVTAIAFSPRA----SS  288 (1113)
T ss_pred             eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch-HHHHhccccceeeeccCccc----cC
Confidence            68999999999999996666666699999888999999999999999998654 46789999999999999965    67


Q ss_pred             eCCCcEEEEecC
Q psy6446          82 AEDKTVRLWDVS   93 (134)
Q Consensus        82 ~~d~~i~~~d~~   93 (134)
                      +.||++++||.+
T Consensus       289 s~dgt~~~wd~r  300 (1113)
T KOG0644|consen  289 SDDGTCRIWDAR  300 (1113)
T ss_pred             CCCCceEecccc
Confidence            889999999987

>KOG0280|consensus

Probab=99.20  E-value=2.4e-10  Score=68.17  Aligned_cols=101  Identities=15%  Similarity=0.200  Sum_probs=77.0

Q ss_pred             EeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC-CeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEec
Q psy6446          16 FQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        16 ~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~   92 (134)
                      .+.++.......|+. +.+.+.+|+.|+.+..||++.+... ....+.|...|.++.-+| .+.++++|+.|..|++||.
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT  240 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence            343444444467766 5678899999999999999954322 222456888999999887 6789999999999999999


Q ss_pred             C-CCceeEEEecCCCCeEEEEccCC
Q psy6446          93 S-ASAEVQKLEFGAVPNSLEISRDG  116 (134)
Q Consensus        93 ~-~~~~~~~~~~~~~v~~~~~~~~~  116 (134)
                      + -++++..-...+.|..++++|.-
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             hcccCccccCccccceEEEEecchh
Confidence            9 46777766677888899988853

>KOG1334|consensus

Probab=99.17  E-value=1.7e-10  Score=72.92  Aligned_cols=120  Identities=17%  Similarity=0.311  Sum_probs=95.1

Q ss_pred             eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee--CCCEEEEeeCCCcEEEEe
Q psy6446          14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d   91 (134)
                      ..+..+.+.+..+.|+..|..|++|+.|..+.+||............+|...|.+..|.|  +.+.+++++.||.+++-.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            345544455555999999999999999999999999887777777789999999999999  567899999999999887


Q ss_pred             cCCCcee----EEEecCCCCeEEEEccCCcE--EEEecCCeEEEEeCC
Q psy6446          92 VSASAEV----QKLEFGAVPNSLEISRDGTT--ITVTHGSCVTFLDAN  133 (134)
Q Consensus        92 ~~~~~~~----~~~~~~~~v~~~~~~~~~~~--l~~~~~~~i~i~d~~  133 (134)
                      +......    +.-+|.+++..++.-|+..+  +.+|.|+.+.-+|++
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            7543322    23347889999999998753  445678888888875

>KOG1963|consensus

Probab=99.13  E-value=8.5e-09  Score=69.07  Aligned_cols=117  Identities=17%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             EEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC
Q psy6446          15 SFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        15 ~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   93 (134)
                      .+. |+..+.. +.|+++|.+|++|+..+.+.+|.+.+++  .+.+.--.++|..+.++||+...+...+|+.|.+....
T Consensus       246 ~lHWH~~~V~~-L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  246 LLHWHHDEVNS-LSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             EEEecccccce-eEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            344 5556666 9999999999999999999999999876  34566677899999999999999999999999998776


Q ss_pred             CCceeEEEec------------CCCCeEEEEccCC-cEEEEecCCeEEEEeCCC
Q psy6446          94 ASAEVQKLEF------------GAVPNSLEISRDG-TTITVTHGSCVTFLDANS  134 (134)
Q Consensus        94 ~~~~~~~~~~------------~~~v~~~~~~~~~-~~l~~~~~~~i~i~d~~t  134 (134)
                      +......+..            ..-.+.++++|-. ..++.+..|.|.+||+-+
T Consensus       323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            5444333321            2335678889844 444556789999999753

>KOG1524|consensus

Probab=99.12  E-value=2.7e-09  Score=68.67  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          17 QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      +.+.+.+-++.|++..+.+++|+.|-..++||-.. .. ...-..|..+|++++|+|+ ..++.++. ++++        
T Consensus       183 kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~-Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R--------  250 (737)
T KOG1524|consen  183 RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-AN-LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR--------  250 (737)
T ss_pred             eccCcEEEEeecCccccceeecCCceeEEeecccC-cc-cccCChhccceeeeeeccc-cceeeeee-eeee--------
Confidence            34556666699999999999999999999999764 22 2344578899999999999 44444443 2333        


Q ss_pred             eeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEE
Q psy6446          97 EVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTF  129 (134)
Q Consensus        97 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i  129 (134)
                        ..-+..+.|..++|++||..++++ +.|.+.+
T Consensus       251 --~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  251 --FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             --ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence              111234668899999999999886 4565543

>KOG4497|consensus

Probab=99.09  E-value=3.1e-09  Score=64.69  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=89.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC------------------------C--
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA------------------------E--   55 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~------------------------~--   55 (134)
                      +.|||..-.-.+..++..-++.. +.|+|.+++|++|+.|+.+++.+--+.+.                        +  
T Consensus       193 laVwd~~Leykv~aYe~~lG~k~-v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  193 LAVWDNVLEYKVYAYERGLGLKF-VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             EEEecchhhheeeeeeeccceeE-EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence            45666443333334444445555 99999999999999999888754211000                        0  


Q ss_pred             ------------------------------Ce---EE------eCCCCCEeEEEEeeCCCEEEEeeC--CCcEEEEecCC
Q psy6446          56 ------------------------------PT---VY------RGHSSGIKHVQFFKNNTRLISCAE--DKTVRLWDVSA   94 (134)
Q Consensus        56 ------------------------------~~---~~------~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~   94 (134)
                                                    ..   .+      ......+.-++|++|..+++|-..  -+.+.+||++.
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence                                          00   00      011235677999999999987654  35799999998


Q ss_pred             CceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          95 SAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        95 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+....+....+|....|+|....++.+ +..++.+|..
T Consensus       352 l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  352 LKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             hhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            8887777778899999999998766654 5678888864

>KOG2695|consensus

Probab=99.09  E-value=1.6e-09  Score=66.16  Aligned_cols=114  Identities=15%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC----CCCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEec
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP----DAEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~   92 (134)
                      ....++. +.|...++.++.|.++|.|..+|++..    .... ...-|...|++++.-. ++++|++.+.+|.|.+||+
T Consensus       251 sksDVfA-lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFA-LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHH-HHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            3444554 888888999999999999999999875    2222 2345889999999877 8899999999999999999


Q ss_pred             CCCce---eEEEe-cC--CCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          93 SASAE---VQKLE-FG--AVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~---~~~~~-~~--~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +.-++   +.... |-  ..-.-+-..+....+++ |.|.-.+||.++
T Consensus       329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            97766   44443 21  11122333455555555 567899999876

>KOG0280|consensus

Probab=99.09  E-value=5.1e-09  Score=62.68  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEee-CCCEEEEeeCCCcEEEEecCCC-ceeEE--
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFK-NNTRLISCAEDKTVRLWDVSAS-AEVQK--  100 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~--  100 (134)
                      +.|++.+..++++..+|.+.+-+..... +..+..++|.-+.....|+. +.+.+.+|+.|+.+..||++-. +.+..  
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~  206 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS  206 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence            8899989999999999998865544322 22236788999999999987 4567889999999999999933 33322  


Q ss_pred             EecCCCCeEEEEccC-CcEEEEe-cCCeEEEEeCCC
Q psy6446         101 LEFGAVPNSLEISRD-GTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       101 ~~~~~~v~~~~~~~~-~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ..|...|.++.-+|. +.++++| .|..|++||.++
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            225678888887765 5678877 689999999873

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.08  E-value=1e-08  Score=66.34  Aligned_cols=88  Identities=13%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             eEeecCCCce--e--eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           3 TVWDAVSGEE--L--HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         3 ~v~d~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      .+|+....+.  +  ..+..+..+.+ ++++|+...++.|+.||.|.+||...+..   ......-.++.++|+|+|..+
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~-ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVIC-CARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceE-EecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEE
Confidence            4667654442  2  22234455555 99999999999999999999999876432   223344668999999999999


Q ss_pred             EEeeCCCcEEEEecCC
Q psy6446          79 ISCAEDKTVRLWDVSA   94 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~   94 (134)
                      +.|+..|.+.+||+.-
T Consensus       315 ~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  315 VVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEcCCceEEEEEeec
Confidence            9999999999999853

>KOG1409|consensus

Probab=99.07  E-value=4.1e-09  Score=64.33  Aligned_cols=86  Identities=16%  Similarity=0.420  Sum_probs=72.6

Q ss_pred             CCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEE
Q psy6446           9 SGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVR   88 (134)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   88 (134)
                      .-.++.++.++...+.++.|.+....|++|..|..+.+||+.........+.+|...|..+...+.-+.+.+++.||.|.
T Consensus       186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence            34456666755666666999999999999999999999999876666667789999999999988889999999999999


Q ss_pred             EEecCC
Q psy6446          89 LWDVSA   94 (134)
Q Consensus        89 ~~d~~~   94 (134)
                      +||...
T Consensus       266 ~w~mn~  271 (404)
T KOG1409|consen  266 VWNMNV  271 (404)
T ss_pred             EEeccc
Confidence            999764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=5.7e-08  Score=62.55  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=72.4

Q ss_pred             CCceeeEEEccCCcE-EEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE-eeCC--CcEEEEec
Q psy6446          20 HIVKSSVHFATDSYR-LATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS-CAED--KTVRLWDV   92 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~-l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~~~d~   92 (134)
                      ..... ..|+|+|+. ++..+.   +..|+++|+.++...  .+....+......|+||++.++. .+.+  ..|.++|+
T Consensus       188 ~~~~~-p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        188 GLNIF-PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CCeEe-EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            33444 999999985 554333   357888998775532  33345566677889999987764 3333  46888888


Q ss_pred             CCCceeEEEecCCCCeEEEEccCCcEEEEecC----CeEEEEeCC
Q psy6446          93 SASAEVQKLEFGAVPNSLEISRDGTTITVTHG----SCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~i~i~d~~  133 (134)
                      .+++...............|+|||+.++..++    ..|.++|+.
T Consensus       265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            77764443333333456789999987775432    277777764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=7.6e-08  Score=68.17  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=76.7

Q ss_pred             EEEccCCcEE-EEecCCCeEEEEECCCCCCCCeE------------Ee--------CCCCCEeEEEEeeCCCEEEEeeCC
Q psy6446          26 VHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTV------------YR--------GHSSGIKHVQFFKNNTRLISCAED   84 (134)
Q Consensus        26 ~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~------------~~--------~~~~~v~~~~~~~~~~~l~~~~~d   84 (134)
                      ++++|+++.| ++-+.++.|++||+.++......            +-        ..-.....++++++++.+++-..+
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N  824 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN  824 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence            8899998855 45566789999998764321000            00        001134688999999988888889


Q ss_pred             CcEEEEecCCCceeEEEecC--------------CCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +.|++||..++.........              .....++++++|+.+++. .++.|++||+++
T Consensus       825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            99999999876654332211              246789999999877765 679999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=1.2e-07  Score=59.38  Aligned_cols=103  Identities=15%  Similarity=0.078  Sum_probs=77.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC----------CCeEEEEECCCCCCCCeEEeCC------CC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN----------DKNIRIYDLNKPDAEPTVYRGH------SS   64 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~------~~   64 (134)
                      +|.+.|..+++.+.++........ + ++||++.|+++..          +..|.+||..+.+.......+.      ..
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            478999999999999985445544 5 9999999887755          6799999999866443222111      12


Q ss_pred             CEeEEEEeeCCCEEEEeeC--CCcEEEEecCCCceeEEEecCC
Q psy6446          65 GIKHVQFFKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFGA  105 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~  105 (134)
                      ....++++|||++++....  +..+.+.|+.+++.+..+..+.
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence            3347899999999987663  6889999999999998887544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041|consensus

Probab=99.03  E-value=3.1e-09  Score=70.72  Aligned_cols=110  Identities=17%  Similarity=0.292  Sum_probs=87.3

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--------------CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--------------EPTVYRGHSSGIKHVQFFKNNTRLISCAEDK   85 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   85 (134)
                      +....|+.|+.+..++++|+.||.+++..+.+...              ..+.+.+|...|.-+.|+.+.+.|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            44567899999999999999999999998865321              1235679999999999999999999999999


Q ss_pred             cEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEe-cCCeEEE
Q psy6446          86 TVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVT-HGSCVTF  129 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i  129 (134)
                      .|.+|-+-.+.....+.   ..+-|.+++|..+|..+++. .||.|.+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            99999887776544332   35678899999999877765 5666654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1e-07  Score=61.46  Aligned_cols=127  Identities=12%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCC--CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SND--KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d--~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.++|+.+++............ ...|+|||+.++.. +.+  ..+.++++.++..  ..+..+........|+|||+.+
T Consensus       215 Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~LT~~~~~d~~p~~SPDG~~I  291 (419)
T PRK04043        215 LYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQITNYPGIDVNGNFVEDDKRI  291 (419)
T ss_pred             EEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEcccCCCccCccEECCCCCEE
Confidence            6788988887665554333333 48899999877643 333  5677888776542  2233333334566899999988


Q ss_pred             EEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-C--------CeEEEEeCC
Q psy6446          79 ISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-G--------SCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~--------~~i~i~d~~  133 (134)
                      +-.+. .+  .|.+.|+.+++..+.......  ...|+|+|+.++.. . .        ..|.+.|+.
T Consensus       292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN  357 (419)
T ss_pred             EEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence            75543 33  577888877766443322222  24899999988753 2 1        367777764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.02  E-value=1.2e-07  Score=59.69  Aligned_cols=130  Identities=16%  Similarity=0.249  Sum_probs=82.3

Q ss_pred             eeEeecCCCc--ee--eEEe--eCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCCCCe---EEe----CC--CCC
Q psy6446           2 GTVWDAVSGE--EL--HSFQ--HPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDAEPT---VYR----GH--SSG   65 (134)
Q Consensus         2 i~v~d~~~~~--~~--~~~~--~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~---~~~----~~--~~~   65 (134)
                      |.+|++....  ..  ..+.  ....... +.|+|+++++++. -.++.|.++++........   ...    +.  ...
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh-~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRH-LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEE-EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcE-EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            6677776544  32  2233  3344556 9999999988655 4578899999883221111   111    11  125


Q ss_pred             EeEEEEeeCCCEEEEee-CCCcEEEEecC--CCce--eEEEec-CCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          66 IKHVQFFKNNTRLISCA-EDKTVRLWDVS--ASAE--VQKLEF-GAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~-~d~~i~~~d~~--~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      ...+.++||+++|+.+. ..+.|.+|++.  +++.  +..... ....+.+.++|+|++|+++  .++.|.+|++
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            78999999999987665 45689999983  2332  333333 4457999999999998876  4589999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=1.5e-07  Score=60.20  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCC-eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDK-NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      +...+.- ..+..+++.++.|..|| .+-++|.+++..  ..+...-+.|.++..+++|++++.+.....+.+.|+.+++
T Consensus       358 ~~~~VrY-~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         358 KKGGVRY-RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CCCceEE-EEEccCCcceEEeccCCceEEEEecCCceE--EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            3444333 56666777889999999 899999988652  3345566889999999999999999999999999999988


Q ss_pred             eeEEEe-cCCCCeEEEEccCCcEEEEe-c----CCeEEEEeCC
Q psy6446          97 EVQKLE-FGAVPNSLEISRDGTTITVT-H----GSCVTFLDAN  133 (134)
Q Consensus        97 ~~~~~~-~~~~v~~~~~~~~~~~l~~~-~----~~~i~i~d~~  133 (134)
                      ....-+ ...-|....|+|++++++-+ -    ...|++||+.
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            765443 35678999999999999976 2    2589999875

>KOG1240|consensus

Probab=99.01  E-value=1.5e-08  Score=70.66  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC---C
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN---T   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~   76 (134)
                      |..||+......+.++  ...+.+++++.+|.+++++.|...|.+.+||++-..........+..++..+..+|-.   .
T Consensus      1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             eEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc
Confidence            5678988777776665  3445566699999999999999999999999997665544444566788888887733   3


Q ss_pred             EEEEee--CCCcEEEEecCCCceeEEEecCCC--------------------CeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          77 RLISCA--EDKTVRLWDVSASAEVQKLEFGAV--------------------PNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~--------------------v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      ..++++  ..+.+.+|++.+|.+...+-....                    .....+...+.++.+ +.|..|+.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            444443  567899999999876665542211                    011122222344454 578999999974

>KOG1064|consensus

Probab=98.98  E-value=8.2e-09  Score=74.35  Aligned_cols=129  Identities=12%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++|.+..++.+..++ ....-++.+.|+.+|+.+..+..||.+.+|....  .+....+.|........|-.  ..++
T Consensus      2231 sv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~qchnk~~~Df~Fi~--s~~~ 2306 (2439)
T KOG1064|consen 2231 SVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSWQCHNKALSDFRFIG--SLLA 2306 (2439)
T ss_pred             eEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cceeccccCCccccceeeee--hhhh
Confidence            47899999899888887 2224555599999999999999999999999873  34445677888888888864  5566


Q ss_pred             EeeC---CCcEEEEecCCCc--eeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAE---DKTVRLWDVSASA--EVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~---d~~i~~~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.   ++.+.+||..-..  ..-...|.+..+++++.|..+.+++| .+|.|.+||++
T Consensus      2307 tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             ccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence            5543   5679999975322  22223478889999999999888876 57999999985

>KOG2314|consensus

Probab=98.90  E-value=3.8e-08  Score=63.70  Aligned_cols=108  Identities=14%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC-----------CcEEEE
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED-----------KTVRLW   90 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~   90 (134)
                      .-+.+.|||.|.+|++-...| |.+|-=..-....+.  .| ..|.-+.|||..++|+|-+..           ..+.||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            344599999999999988766 778865443333332  24 468999999999999986531           368999


Q ss_pred             ecCCCceeEEEec---CCCC-eEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          91 DVSASAEVQKLEF---GAVP-NSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~~~~~~~---~~~v-~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |+.+|...+.+..   +..+ .-..||.|+++++.-....|.||+..
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp  334 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP  334 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecC
Confidence            9999999888875   2222 45689999999998777889998764

>KOG1354|consensus

Probab=98.89  E-value=6.1e-08  Score=59.50  Aligned_cols=116  Identities=18%  Similarity=0.332  Sum_probs=83.8

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC----CCeEEeCCC------------CCEeEEEEeeCC--CEEE
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA----EPTVYRGHS------------SGIKHVQFFKNN--TRLI   79 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~--~~l~   79 (134)
                      ....+++++.|...|.+|++|..+|.|-++.-.....    ....+..|.            ..|..+.|.+++  ..++
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            3456778899999999999999999999987544222    122333343            357889998754  4677


Q ss_pred             EeeCCCcEEEEecCCCceeE-----------------------------------EEe--cCCCCeEEEEccCCcEEEEe
Q psy6446          80 SCAEDKTVRLWDVSASAEVQ-----------------------------------KLE--FGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~-----------------------------------~~~--~~~~v~~~~~~~~~~~l~~~  122 (134)
                      ....|.+|++|.++......                                   .+.  |..-+++++++.|+..++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88999999999876422111                                   000  23457889999999999999


Q ss_pred             cCCeEEEEeCC
Q psy6446         123 HGSCVTFLDAN  133 (134)
Q Consensus       123 ~~~~i~i~d~~  133 (134)
                      .|=+|.+|+++
T Consensus       183 DdLRINLWnle  193 (433)
T KOG1354|consen  183 DDLRINLWNLE  193 (433)
T ss_pred             cceeeeecccc
Confidence            89999999875

>KOG2315|consensus

Probab=98.88  E-value=3.7e-08  Score=63.45  Aligned_cols=106  Identities=9%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +.|||++ +.++..+  .....+++.|+|.|++|+.++.   .|.+-+||..+.+.+. .+..  ...+-..|+|||+++
T Consensus       296 vtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~-~~~a--~~tt~~eW~PdGe~f  369 (566)
T KOG2315|consen  296 VTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA-KFKA--ANTTVFEWSPDGEYF  369 (566)
T ss_pred             EEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc-cccc--CCceEEEEcCCCcEE
Confidence            4567754 5555544  3344556999999999887654   4789999998855443 3332  345778999999999


Q ss_pred             EEeeC------CCcEEEEecCCCceeEEEecCCCCeEEEEcc
Q psy6446          79 ISCAE------DKTVRLWDVSASAEVQKLEFGAVPNSLEISR  114 (134)
Q Consensus        79 ~~~~~------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~  114 (134)
                      +|+.-      |+.++||++. |+.+......++...+.|-|
T Consensus       370 lTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  370 LTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             EEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeee
Confidence            98754      6789999975 44433332333455566654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.86  E-value=7.6e-07  Score=55.92  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=76.1

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCC----CCeEE-------eCCCCCEeEEEEeeCCCEEEEee----------CCCcEEE
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDA----EPTVY-------RGHSSGIKHVQFFKNNTRLISCA----------EDKTVRL   89 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~   89 (134)
                      +++++.+... |.|.+.|+.....    ....+       ....+...-++++|+++.++...          ..+.|.+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            7777777766 9999999644221    11111       11334556699999998887632          1257999


Q ss_pred             EecCCCceeEEEecCCCCeEEEEccCCc-EEEEe--cCCeEEEEeCCC
Q psy6446          90 WDVSASAEVQKLEFGAVPNSLEISRDGT-TITVT--HGSCVTFLDANS  134 (134)
Q Consensus        90 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~--~~~~i~i~d~~t  134 (134)
                      +|..+++.+..+..+..+..++++||++ ++++.  .++.|.++|+.+
T Consensus       284 iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       284 VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            9999999999999899999999999998 77654  468899999864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.86  E-value=1.6e-07  Score=60.43  Aligned_cols=128  Identities=16%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEE-ecCCCe--EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDKN--IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +.++|+.+++....+........ .+|+|||+.++. ...||.  |+++|+.... . ..+..-.+.-..-.|+|||+++
T Consensus       220 i~~~~l~~g~~~~i~~~~g~~~~-P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~-~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         220 IYYLDLNTGKRPVILNFNGNNGA-PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L-PRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             EEEEeccCCccceeeccCCccCC-ccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c-eecccCCccccCccCCCCCCEE
Confidence            56778887776665554434444 899999988765 455665  5566666544 2 2233334444578899999998


Q ss_pred             EEee-CCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CCe--EEEEeC
Q psy6446          79 ISCA-EDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSC--VTFLDA  132 (134)
Q Consensus        79 ~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~--i~i~d~  132 (134)
                      +-.+ ..|  .|.+.|.......+.......-....|+|||++++...  +|.  |.+.|+
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            7544 444  46667766655533333333333788999999888643  454  555544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.5e-06  Score=52.67  Aligned_cols=130  Identities=8%  Similarity=0.150  Sum_probs=86.8

Q ss_pred             eeEeecCCCceee----EEeeCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCCeEEeC---------CCCCEe
Q psy6446           2 GTVWDAVSGEELH----SFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEPTVYRG---------HSSGIK   67 (134)
Q Consensus         2 i~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~---------~~~~v~   67 (134)
                      |.+|++..|+...    .++....... +.|+|++++..+.. .+++|-+|..+........+..         -.....
T Consensus       169 i~~y~~~dg~L~~~~~~~v~~G~GPRH-i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         169 IFLYDLDDGKLTPADPAEVKPGAGPRH-IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             EEEEEcccCccccccccccCCCCCcce-EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            6788888776533    2334555667 99999999987655 5889999998874211111111         124567


Q ss_pred             EEEEeeCCCEEEEeeC-CCcEEEEecCCC-ceeEEEe----cCCCCeEEEEccCCcEEEEe-c-CCeEEEEeC
Q psy6446          68 HVQFFKNNTRLISCAE-DKTVRLWDVSAS-AEVQKLE----FGAVPNSLEISRDGTTITVT-H-GSCVTFLDA  132 (134)
Q Consensus        68 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~-~~~i~i~d~  132 (134)
                      .+..++||++|.++.+ ...|.+|.+... ..+....    +....+...+++.+++|++. . +..|.+|..
T Consensus       248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            8889999999988765 346888877543 2222222    23447899999999998876 3 367888764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.84  E-value=2.2e-06  Score=54.09  Aligned_cols=131  Identities=14%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             eeEeec--CCCcee--eEEeeCCCceeeEEEccCCcEEEEecC----CCeEEEEECCCCC-CC--CeEEeCCCCCEeEEE
Q psy6446           2 GTVWDA--VSGEEL--HSFQHPHIVKSSVHFATDSYRLATGSN----DKNIRIYDLNKPD-AE--PTVYRGHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~-~~--~~~~~~~~~~v~~~~   70 (134)
                      |++|++  .+++..  ..+........ ++++|++++|.+...    ++.|..|.+.... .+  ...........+.++
T Consensus        15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~   93 (345)
T PF10282_consen   15 IYVFRFDEETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA   93 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred             EEEEEEcCCCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence            445555  555543  33334444455 999999999988866    5789988887641 11  112222445678999


Q ss_pred             EeeCCCEEEEee-CCCcEEEEecCC-CceeEE---Eec-----------CCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          71 FFKNNTRLISCA-EDKTVRLWDVSA-SAEVQK---LEF-----------GAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        71 ~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      ++|++++++++. .+|.+.++++.. +.....   ..+           .....++.++|+++++++.  +...|.+|++
T Consensus        94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen   94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            999999988776 588999999986 333222   211           2335789999999988875  4578999987


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      .
T Consensus       174 ~  174 (345)
T PF10282_consen  174 D  174 (345)
T ss_dssp             -
T ss_pred             e
Confidence            4

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275|consensus

Probab=98.84  E-value=2.7e-07  Score=63.05  Aligned_cols=124  Identities=17%  Similarity=0.254  Sum_probs=88.7

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA   82 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (134)
                      -.+|+.+.+..+...-....+  .....+++.+++|...|+|.+-|.++-+ ....+..|.+.+.+++.  .|+.|++++
T Consensus       160 i~~Dl~~~~e~r~~~v~a~~v--~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSDfDv--~GNlLitCG  234 (1118)
T KOG1275|consen  160 IHIDLNTEKETRTTNVSASGV--TIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISDFDV--QGNLLITCG  234 (1118)
T ss_pred             eeeecccceeeeeeeccCCce--EEEEecCcEEEeecccceEEeecCCcCc-eeeeeeccccceeeeec--cCCeEEEee
Confidence            356777666666555333233  3334578999999999999999998854 45678999999988777  689999887


Q ss_pred             C---------CCcEEEEecCCCceeEEE-----------------------------------------------ecCCC
Q psy6446          83 E---------DKTVRLWDVSASAEVQKL-----------------------------------------------EFGAV  106 (134)
Q Consensus        83 ~---------d~~i~~~d~~~~~~~~~~-----------------------------------------------~~~~~  106 (134)
                      .         |..+++||++.-+.+..+                                               +..+.
T Consensus       235 ~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~  314 (1118)
T KOG1275|consen  235 YSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG  314 (1118)
T ss_pred             cccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc
Confidence            5         456899998863321000                                               01224


Q ss_pred             CeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446         107 PNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus       107 v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +..+.+++++..++.+ .+|.|.+|-
T Consensus       315 i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  315 ISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeEEecCCCceEEEecccCcEeeec
Confidence            6788899999999988 579999995

>KOG1064|consensus

Probab=98.84  E-value=9.8e-09  Score=73.99  Aligned_cols=92  Identities=17%  Similarity=0.244  Sum_probs=69.8

Q ss_pred             cEEEEe---cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeE
Q psy6446          33 YRLATG---SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNS  109 (134)
Q Consensus        33 ~~l~~~---~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~  109 (134)
                      ..++++   +.++++.+||...........+.|.+.++++++.|..+.|++|+.+|.+++||++..+....++.      
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------ 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------ 2376 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------
Confidence            445554   34678999997654433334488999999999999999999999999999999998776654432      


Q ss_pred             EEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         110 LEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       110 ~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                        ++ ...+++.+ ..|.++||++.
T Consensus      2377 --~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             --hh-hhheeeccCcccceEEEEcc
Confidence              44 44566665 56999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.82  E-value=4e-06  Score=51.44  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             eeEeecCCCceeeEEee-CCCc-eeeEEEccCCcEEEEecC-----CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQH-PHIV-KSSVHFATDSYRLATGSN-----DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      ..+||..+++....+.. .+.- ..-..|++||++|++.-+     .|.|-|||....-.....+..+.-....+.+.||
T Consensus        30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD  109 (305)
T PF07433_consen   30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD  109 (305)
T ss_pred             EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC
Confidence            46899999999888863 2222 223889999999998633     5789999998433333455666666677888888


Q ss_pred             CCEEEEe
Q psy6446          75 NTRLISC   81 (134)
Q Consensus        75 ~~~l~~~   81 (134)
                      ++.|+.+
T Consensus       110 G~tLvVA  116 (305)
T PF07433_consen  110 GETLVVA  116 (305)
T ss_pred             CCEEEEE
Confidence            8766643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.8e-06  Score=53.23  Aligned_cols=131  Identities=15%  Similarity=0.131  Sum_probs=86.3

Q ss_pred             eeEeecCC--Cc--eeeEEeeCCCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEE---eCCCCCEeEEEE
Q psy6446           2 GTVWDAVS--GE--ELHSFQHPHIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVY---RGHSSGIKHVQF   71 (134)
Q Consensus         2 i~v~d~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~---~~~~~~v~~~~~   71 (134)
                      |++|++.+  |+  .+..+........ ++|+|+++.|.++..+   |.|.-|.++...-....+   .....+.+.+++
T Consensus        18 I~v~~ld~~~g~l~~~~~v~~~~npty-l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv   96 (346)
T COG2706          18 IYVFNLDTKTGELSLLQLVAELGNPTY-LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV   96 (346)
T ss_pred             eEEEEEeCcccccchhhhccccCCCce-EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE
Confidence            67787762  22  2333445555556 9999999999887554   667777766421111111   122334489999


Q ss_pred             eeCCCEEEEeeC-CCcEEEEecCC-Cce---eEEEecCCC----------CeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          72 FKNNTRLISCAE-DKTVRLWDVSA-SAE---VQKLEFGAV----------PNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        72 ~~~~~~l~~~~~-d~~i~~~d~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++++++++++.. -|.|.++.++. |..   .....+...          +....+.|+++++++.  +..+|.+|++.
T Consensus        97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~  175 (346)
T COG2706          97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD  175 (346)
T ss_pred             CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence            999999987765 57899999865 332   233334333          7788999999998876  45789999874

>KOG1354|consensus

Probab=98.78  E-value=1.3e-07  Score=58.07  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CC-----CCCEeEEEEee-CCCEEEEeeCCCcEEEE
Q psy6446          19 PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GH-----SSGIKHVQFFK-NNTRLISCAEDKTVRLW   90 (134)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~~~   90 (134)
                      +...++++.++.|+..++++ .|=.|.+|++.-.........  .+     ..-|++..|+| ..+.++..+..|+|++.
T Consensus       163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            44556669999988887776 567899999875443222221  11     23578899999 56788888999999999


Q ss_pred             ecCCCce----eEEEe--c-----------CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          91 DVSASAE----VQKLE--F-----------GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~----~~~~~--~-----------~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |++....    ...+.  .           -..|..++|+++|+++++-.=-+|++||+.
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~n  301 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLN  301 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecc
Confidence            9985321    11111  0           135788999999999988655899999984

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.78  E-value=1.2e-06  Score=60.08  Aligned_cols=129  Identities=14%  Similarity=0.161  Sum_probs=86.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccC-------CcEEEEecCCCeEEEEECCCCCCCCeEEe----CCCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATD-------SYRLATGSNDKNIRIYDLNKPDAEPTVYR----GHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----~~~~~v~~~~   70 (134)
                      |+-.|+..|+.+...+.+.... ...+.|+       ....+.|-.++.+..||.+........-.    ......++++
T Consensus       506 ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a  584 (794)
T PF08553_consen  506 LYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA  584 (794)
T ss_pred             eEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence            5678999999998888433331 1334442       34467777788899999987432111101    1233456666


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      -+.+ -+++.|+.+|.|++||-...+....++ .+.+|.++..+.||++++++.+.-|.++++
T Consensus       585 Tt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  585 TTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             ecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            5544 478999999999999943322222333 378999999999999999988887877775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.76  E-value=3.1e-06  Score=56.49  Aligned_cols=130  Identities=18%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------------------------------------CC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------------------------------------ND   41 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------------------~d   41 (134)
                      +.+.|..+.+...++.-....-. +.++|+|+++++.+                                        .+
T Consensus       217 vSvID~etmeV~~qV~Vdgnpd~-v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g  295 (635)
T PRK02888        217 FTAVDAETMEVAWQVMVDGNLDN-VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG  295 (635)
T ss_pred             EEEEECccceEEEEEEeCCCccc-ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence            45667777777777775445555 77888888877765                                        12


Q ss_pred             CeEEEEECCC----CCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCce------------eEEEecC
Q psy6446          42 KNIRIYDLNK----PDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAE------------VQKLEFG  104 (134)
Q Consensus        42 ~~v~i~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------------~~~~~~~  104 (134)
                      +.|.+.|..+    +.... .+-.-......+.++|||++++..+ .++++.+.|+.+.+.            .......
T Consensus       296 n~V~VID~~t~~~~~~~v~-~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALT-RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceE-EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            4467777665    22221 2223445678899999999987655 488999999987553            3333345


Q ss_pred             CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         105 AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ......+|+++|....+- -|.+|..||+.
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            556788999998754443 68899999975

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.76  E-value=2.2e-06  Score=51.09  Aligned_cols=131  Identities=17%  Similarity=0.150  Sum_probs=81.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeE-EEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSV-HFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|..+|..+|+.+.........-..+ ...+++..+++++.++.+..+|..+++.... ... .+.+.... ..++..++
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~-~~~-~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWR-FDL-PGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEE-EEC-SSCGGSGE-EEETTEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEE-eec-ccccccee-eecccccc
Confidence            47889999999999987422121111 1333567788878999999999988764332 222 22222212 23566667


Q ss_pred             EeeCCCcEEEEecCCCceeEEE-ecCCC----CeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKL-EFGAV----PNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~-~~~~~----v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+..++.+..+|..+++..... ....+    .........+..++++ .++.|..+|+++
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC
Confidence            7778889999999999998884 32211    1222223335555554 589999998764

...

>KOG3621|consensus

Probab=98.74  E-value=1.4e-07  Score=62.53  Aligned_cols=107  Identities=11%  Similarity=0.080  Sum_probs=81.1

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe---
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE---  102 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---  102 (134)
                      -+++..+++++.|+..|.+++|+-..+........+..+.+.....+++..+++.++..|.|.++.+..+.+.....   
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            44566789999999999999999877654443344455677778888888888999999999999887643322111   


Q ss_pred             ----cCCCCeEEEEccCCcEEEEec-CCeEEEEeC
Q psy6446         103 ----FGAVPNSLEISRDGTTITVTH-GSCVTFLDA  132 (134)
Q Consensus       103 ----~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~  132 (134)
                          ++..|++++|++++..+..|. .|+|..-.+
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence                466799999999999999985 488776543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=3.1e-06  Score=50.87  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCC----------------------------------CC--------e---
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDA----------------------------------EP--------T---   57 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------~~--------~---   57 (134)
                      -..++|+||+..|+.+...|.|+++|+.....                                  +.        +   
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            34499999999999999999999999852100                                  00        0   


Q ss_pred             ---------------EE-eCCCCCEeEEEEeeCCCEEEEeeCC-C----------cEEEEecCCCceeEE----------
Q psy6446          58 ---------------VY-RGHSSGIKHVQFFKNNTRLISCAED-K----------TVRLWDVSASAEVQK----------  100 (134)
Q Consensus        58 ---------------~~-~~~~~~v~~~~~~~~~~~l~~~~~d-~----------~i~~~d~~~~~~~~~----------  100 (134)
                                     .+ ..+...|.++.++|..+.|+.++.. .          -+.-|.+-++.+...          
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence                           00 0124578888999887877765532 1          255665433221100          


Q ss_pred             ----------Ee----------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         101 ----------LE----------FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       101 ----------~~----------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                                +.          ....|..|+.+|||..|++. .+|.|.+|++.
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                      00          13467899999999999976 68999999975

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.72  E-value=1.5e-06  Score=61.07  Aligned_cols=129  Identities=12%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEe--CCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~   76 (134)
                      ++||+- .|+....-+.-.+.-.+++|.|.|++|++...   ...|.+|.-+....-...++  .....|..+.|++++.
T Consensus       239 iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  239 IRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             EEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            788984 47766666544444556999999999998765   34566666443221111122  3456799999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeE--EEe--cCCCCeEEEEccCCc-EEE-EecCCeEEEEeC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQ--KLE--FGAVPNSLEISRDGT-TIT-VTHGSCVTFLDA  132 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~--~~~--~~~~v~~~~~~~~~~-~l~-~~~~~~i~i~d~  132 (134)
                      .|+....|. |.+|-..+-....  .+.  ....+..+.|+|... .+. .+.+|.+..++.
T Consensus       318 iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  318 ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            999877665 9999877655332  222  234456699999753 333 345576666553

>KOG4714|consensus

Probab=98.71  E-value=3.2e-08  Score=58.54  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEEEeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCC--c
Q psy6446          43 NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDG--T  117 (134)
Q Consensus        43 ~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~--~  117 (134)
                      ..+.|+++..+......+ ....|.+++-+|..+ .+++|+.||.+.+||.++......+.  ++.++..+-|+|..  +
T Consensus       160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            445566654332221111 223489999999554 55678889999999998874333222  67899999999965  3


Q ss_pred             EEEEecCCeEEEEeCC
Q psy6446         118 TITVTHGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~~~~~i~i~d~~  133 (134)
                      ++.++.||.+..||..
T Consensus       239 Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAS  254 (319)
T ss_pred             eeEecCCCcEEEEcCC
Confidence            5556689999999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.71  E-value=2.4e-06  Score=54.54  Aligned_cols=122  Identities=11%  Similarity=-0.021  Sum_probs=78.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      ++.+|..+|+.+...+.... .. ..  ..+..++.++.+|.+..+|..+++..................  .+..++++
T Consensus       253 l~a~d~~tG~~~W~~~~~~~-~~-p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~  326 (377)
T TIGR03300       253 VAALDLRSGRVLWKRDASSY-QG-PA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVG  326 (377)
T ss_pred             EEEEECCCCcEEEeeccCCc-cC-ce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEE
Confidence            56788888888776653221 11 22  246778888899999999998865432110111111222222  46788899


Q ss_pred             eCCCcEEEEecCCCceeEEEecCC-CC-eEEEEccCCcEEEEecCCeEEEE
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFGA-VP-NSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      +.+|.+.++|..+++.+..+.... .+ ....+ .++++++.+.||.|..+
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence            999999999999999998887543 33 22333 35566677788988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.71  E-value=2.4e-06  Score=55.03  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=77.6

Q ss_pred             CCCceeeEEEccCCcEEEEec--CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC---CcEEEEecC
Q psy6446          19 PHIVKSSVHFATDSYRLATGS--NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED---KTVRLWDVS   93 (134)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~   93 (134)
                      .+.+.. ..|+|.++.+++.+  ....+.++|++..  +  .+......=+.+-|+|.+++++.++-|   |.+.+||..
T Consensus       274 ~~pVhd-f~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         274 KDPVHD-FTWEPLSSRFAVISGYMPASVSVFDLRGN--L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccee-eeecccCCceeEEecccccceeecccccc--e--EEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            344444 99999888876654  6678888998863  2  233444556788999999999887654   579999977


Q ss_pred             CCceeEEEecCCCCeEEEEccCCcEEEEe-------cCCeEEEEeCC
Q psy6446          94 ASAEVQKLEFGAVPNSLEISRDGTTITVT-------HGSCVTFLDAN  133 (134)
Q Consensus        94 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~~~~i~i~d~~  133 (134)
                      .......-.......-+.|+|+++++...       .|..|.+||+.
T Consensus       349 ~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         349 GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             CceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            65444423334445667899999988753       16789999974

>KOG0309|consensus

Probab=98.70  E-value=6.6e-08  Score=64.74  Aligned_cols=130  Identities=15%  Similarity=0.307  Sum_probs=90.0

Q ss_pred             EeecCC--CceeeEE-eeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           4 VWDAVS--GEELHSF-QHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         4 v~d~~~--~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++..  .+.+..+ .++...+.-+-|+| ....+++++-|..+..||++....+.............++|+.....+.
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            566542  2233333 34555555599998 5567899999999999999998776666666667789999998555566


Q ss_pred             EeeCCCcEEEEecCCCce-eEEEe-cCCCCeEEEEccC--CcEEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAE-VQKLE-FGAVPNSLEISRD--GTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~-~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~i~i~d~~  133 (134)
                      +.+..+.+.+||.+.+.. +..++ +-..+..+.|..-  +..+.++.|++|+.||..
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            667777899999987653 33333 3455666666643  344445678999999864

>KOG1334|consensus

Probab=98.69  E-value=7e-08  Score=61.51  Aligned_cols=132  Identities=20%  Similarity=0.281  Sum_probs=97.9

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCC--CeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAE--PTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~   74 (134)
                      .|.+||+.++++...+.  |...+.. ..|-|  +..-+++++.||.+++=.+......  ...+..|.++|.-++.-|+
T Consensus       165 ~vv~WdW~~~~~~l~f~SGH~~NvfQ-aKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~  243 (559)
T KOG1334|consen  165 QVVVWDWVSGSPKLSFESGHCNNVFQ-AKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD  243 (559)
T ss_pred             eEEeehhhccCcccccccccccchhh-hhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCC
Confidence            36799999999988887  5666666 66877  4467899999999998776543322  2335578999999999995


Q ss_pred             C-CEEEEeeCCCcEEEEecCCCceeEEEec---C-C---CCeEEEEccCCc-EEEEe-cCCeEEEEeCC
Q psy6446          75 N-TRLISCAEDKTVRLWDVSASAEVQKLEF---G-A---VPNSLEISRDGT-TITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 ~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~-~---~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~  133 (134)
                      . ..|.++++|+.+.-+|++++.+...+..   . .   ....++..|-.. .++++ .|..+++||.+
T Consensus       244 sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R  312 (559)
T KOG1334|consen  244 SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR  312 (559)
T ss_pred             CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence            5 5688999999999999998776555442   1 1   346778888665 45554 67888888875

>KOG2695|consensus

Probab=98.67  E-value=2.8e-07  Score=56.69  Aligned_cols=111  Identities=17%  Similarity=0.220  Sum_probs=79.2

Q ss_pred             eeEeecCCC-----ceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCC--CCeEEeCCCCCEeEEEE--
Q psy6446           2 GTVWDAVSG-----EELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDA--EPTVYRGHSSGIKHVQF--   71 (134)
Q Consensus         2 i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~v~~~~~--   71 (134)
                      |..+|++.+     .+...+-|+..+.+ +..-. ++++|.+.+.+|.|++||++..++  ....+.+|...-..+-+  
T Consensus       276 I~~iDLR~rnqG~~~~a~rlyh~Ssvts-lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v  354 (425)
T KOG2695|consen  276 IFVIDLRCRNQGNGWCAQRLYHDSSVTS-LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV  354 (425)
T ss_pred             EEEEEeeecccCCCcceEEEEcCcchhh-hhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc
Confidence            567777643     45666667766655 55444 678899999999999999987554  23456777654443333  


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEecCC-----CCeEEEEc
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA-----VPNSLEIS  113 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~v~~~~~~  113 (134)
                      .+....+++++.|-..++|.++.+..+.+++.+.     .+.+++|+
T Consensus       355 ~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  355 KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            4566788899999999999999999998887532     34556654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=1.6e-05  Score=56.95  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=71.8

Q ss_pred             eEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeC---------------CCCCEeEEEEeeCCCEEE-EeeCCCcE
Q psy6446          25 SVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRG---------------HSSGIKHVQFFKNNTRLI-SCAEDKTV   87 (134)
Q Consensus        25 ~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~d~~i   87 (134)
                      .++++| ++..+++.+.++.|++||..++..  ..+.+               .-.....++++|+++.|+ +-..++.|
T Consensus       687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             EEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            388999 566667777788999999876431  11111               112456799999988554 55567899


Q ss_pred             EEEecCCCceeEEEe-----------c-----------CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          88 RLWDVSASAEVQKLE-----------F-----------GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~-----------~-----------~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++||+.++.......           .           -....+++++++|..+++. .++.|++||..
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            999998765321110           0           1134689999999876664 67999999975

>KOG4190|consensus

Probab=98.65  E-value=2.8e-07  Score=60.25  Aligned_cols=132  Identities=17%  Similarity=0.336  Sum_probs=87.5

Q ss_pred             CeeEeecCC-------CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEe
Q psy6446           1 MGTVWDAVS-------GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~   72 (134)
                      ||++|.++.       ..+..+++.+...+..+.|-.+-+.+++  .||.+.+||.--+....++... ..+.+..+.--
T Consensus       758 TVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl  835 (1034)
T KOG4190|consen  758 TVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL  835 (1034)
T ss_pred             eEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEec
Confidence            578898753       2255666644444444888777666655  4789999997665544333221 12333333333


Q ss_pred             e--CCCEEEE-eeCCCcEEEEecCCCceeEEEec------CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          73 K--NNTRLIS-CAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        73 ~--~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +  +...++. ++...+++++|-+.+.....++.      ...+++++..+.|+.++++ ++|.|.+.|.++
T Consensus       836 ~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  836 ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            3  3334444 47788999999998887776663      2457899999999999987 779999998764

>KOG4640|consensus

Probab=98.65  E-value=4.2e-07  Score=59.75  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEe-EEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIK-HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      .+.. +.|+|.-..||.+..+|.+-+..++ ..+. ..+.-+...++ +++|.|||+.|+.|-.||+|++.|..++..+.
T Consensus        22 ~i~~-~ewnP~~dLiA~~t~~gelli~R~n-~qRl-wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKR-IEWNPKMDLIATRTEKGELLIHRLN-WQRL-WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEE-EEEcCccchhheeccCCcEEEEEec-ccee-EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3344 9999999999999999999988887 3443 34454666666 99999999999999999999999999988777


Q ss_pred             E--EecCCCCeEEEEcc
Q psy6446         100 K--LEFGAVPNSLEISR  114 (134)
Q Consensus       100 ~--~~~~~~v~~~~~~~  114 (134)
                      .  +.....+.++-|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            6  34566777777763

>KOG4532|consensus

Probab=98.61  E-value=8.8e-06  Score=48.85  Aligned_cols=102  Identities=13%  Similarity=0.085  Sum_probs=71.3

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe----EEeCCCCCEeEEEEeeCCC--EEEEeeCCCcEEEEecC
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT----VYRGHSSGIKHVQFFKNNT--RLISCAEDKTVRLWDVS   93 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~   93 (134)
                      ..... ..|+.....+|++..||.+.|||++....+..    ....|.+.+..+.|++.|.  .|+..-.-+.+.+.|++
T Consensus       204 D~gF~-~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  204 DHGFY-NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCcee-eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            34444 89999999999999999999999987543221    2345889999999998553  44555556789999999


Q ss_pred             CCceeEEEec---------CCCCeEEEEccCCcEEEEe
Q psy6446          94 ASAEVQKLEF---------GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        94 ~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~  122 (134)
                      +++..+.+..         ...+..-.|+.++.-+.+.
T Consensus       283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK  320 (344)
T ss_pred             cCceeeEEecCccccccccccccccccccCCCcccccc
Confidence            9876655542         1235666676666544443

>KOG1912|consensus

Probab=98.61  E-value=3.7e-06  Score=57.04  Aligned_cols=129  Identities=12%  Similarity=0.183  Sum_probs=94.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCC------------cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDS------------YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHV   69 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~   69 (134)
                      |.+-|..+-+.+..++++...+..+.|.|..            -.|+++...|.|.+||....... ..+..|..++.++
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-~~l~~~~~~~qdl  115 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-NWLSHSNDSVQDL  115 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-hhhcCCCcchhhe
Confidence            5677888888888888666666669998731            24677778899999999886543 3566788899999


Q ss_pred             EEee---CC-CEEEEeeCCCcEEEEecCCCceeEEEecC-CCCeEEEEccCC-cEE-EEecCCeEEEEe
Q psy6446          70 QFFK---NN-TRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDG-TTI-TVTHGSCVTFLD  131 (134)
Q Consensus        70 ~~~~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~v~~~~~~~~~-~~l-~~~~~~~i~i~d  131 (134)
                      +|-+   +. ..|+......++.+|+..+|+.+...... ....|+.++|-. +.+ +.+..|.+.+-+
T Consensus       116 ~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  116 CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence            9987   33 45667777789999999999998887754 444668888843 433 345666665543

>KOG1409|consensus

Probab=98.60  E-value=1.8e-06  Score=53.25  Aligned_cols=79  Identities=15%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee--EEEecCCCCeEEEEccCCcEEEE-ecCCeEEEEe
Q psy6446          55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV--QKLEFGAVPNSLEISRDGTTITV-THGSCVTFLD  131 (134)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d  131 (134)
                      +...+.+|.+.+.+++|.|..+.|.++..|..+.+||+..++-.  ....+...+..+...+.-+.+.+ +.||.|.+||
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            34567899999999999999999999999999999999754433  33346677888887777666555 5789999999


Q ss_pred             CC
Q psy6446         132 AN  133 (134)
Q Consensus       132 ~~  133 (134)
                      ++
T Consensus       269 mn  270 (404)
T KOG1409|consen  269 MN  270 (404)
T ss_pred             cc
Confidence            75

>KOG1645|consensus

Probab=98.59  E-value=5.1e-07  Score=56.55  Aligned_cols=89  Identities=16%  Similarity=0.101  Sum_probs=70.1

Q ss_pred             EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEEE
Q psy6446          44 IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TITV  121 (134)
Q Consensus        44 v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  121 (134)
                      +++.+..+.+. ...+..+...|..++|+|..+ .+..++.+..|++.|+++......+.....+.+.+|+-|.. ++.+
T Consensus       175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence            44444333332 235667888999999999776 56788889999999999999988888889999999998874 5666


Q ss_pred             e-cCCeEEEEeCC
Q psy6446         122 T-HGSCVTFLDAN  133 (134)
Q Consensus       122 ~-~~~~i~i~d~~  133 (134)
                      | ..|.|.+||++
T Consensus       254 Gl~nG~VlvyD~R  266 (463)
T KOG1645|consen  254 GLQNGMVLVYDMR  266 (463)
T ss_pred             eccCceEEEEEcc
Confidence            6 46999999986

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=2.1e-05  Score=46.95  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC---CCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS---SGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l   78 (134)
                      +..||..+|+.+..+..........  ...+..+++++.++.++.+|..+++..........   ..........++..+
T Consensus        48 l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  125 (238)
T PF13360_consen   48 LYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRL  125 (238)
T ss_dssp             EEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEE
T ss_pred             EEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEE
Confidence            6789999999999888655544422  22456667777888999999888775543222221   112233333458888


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEec
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      +.+..++.+..+|.++|+.+.....
T Consensus       126 ~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen  126 YVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEETCSEEEEEETTTTEEEEEEES
T ss_pred             EEEeccCcEEEEecCCCcEEEEeec
Confidence            8888899999999999999887764

...

>KOG2066|consensus

Probab=98.57  E-value=5.4e-06  Score=56.15  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=73.8

Q ss_pred             cCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-----CCEEEEeeCCCcEEEEecC---CCceeEEE
Q psy6446          30 TDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-----NTRLISCAEDKTVRLWDVS---ASAEVQKL  101 (134)
Q Consensus        30 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~---~~~~~~~~  101 (134)
                      .+|.++++++.||.|.|-.+.+..... .+ ....++.+++++|+     .+.+++|+..| +.++.-+   ....+...
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~-~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEIT-QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccce-eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            369999999999999999988766442 22 34568999999997     46788898888 7776532   12222222


Q ss_pred             ecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446         102 EFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus       102 ~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ...++|.+++|.  |.+++=+.|-.|++||+.+
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~  188 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT  188 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCCcEEEeccc
Confidence            246889999997  7788888888899999753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.52  E-value=2.4e-05  Score=50.70  Aligned_cols=128  Identities=11%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEe------cC-----CCeEEEEECCCCCCCCeEEeCCCCCEeE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATG------SN-----DKNIRIYDLNKPDAEPTVYRGHSSGIKH   68 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~------~~-----d~~v~i~~~~~~~~~~~~~~~~~~~v~~   68 (134)
                      ++++|.+..++.+.+-. ..-..+. +.|++.|++|++-      +.     ..++++++++.....  ....-.++|..
T Consensus       203 ~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~--V~~~~~~pVhd  279 (561)
T COG5354         203 MVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP--VEKDLKDPVHD  279 (561)
T ss_pred             EEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc--eecccccccee
Confidence            36778877666665444 2333445 8999999887642      11     246788888754332  23356789999


Q ss_pred             EEEeeCCCEEEE--eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE-ec---CCeEEEEeCC
Q psy6446          69 VQFFKNNTRLIS--CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-TH---GSCVTFLDAN  133 (134)
Q Consensus        69 ~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~~~i~i~d~~  133 (134)
                      .+|.|.++.+++  |..+-.+.++|++..  +.....+..=+.+.|+|.+++++. |-   .|.+.+||..
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            999998877664  456778999998865  333333445567888999888775 32   3788888753

>KOG2314|consensus

Probab=98.50  E-value=6.6e-06  Score=53.85  Aligned_cols=119  Identities=8%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCC-CCCCCeEEeCCCCCEeEEEEeeCCCEEEEe---eCCC
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNK-PDAEPTVYRGHSSGIKHVQFFKNNTRLISC---AEDK   85 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~   85 (134)
                      +..++-...++. .+|-|.|+.+++-+.   ..++.+|.+.+ ...+.....-.....+.+.|+|.|++++.+   +..|
T Consensus       439 ve~velke~vi~-FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  439 VEVVELKESVIA-FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             ceeeecchheee-eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccccc
Confidence            444445566666 999999998876543   35788888874 222211111223557889999999998754   4578


Q ss_pred             cEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEec-------CCeEEEEeC
Q psy6446          86 TVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-------GSCVTFLDA  132 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~~~i~i~d~  132 (134)
                      .+..+|+........-. .....+.+.|+|.|+|+++++       |...++|+.
T Consensus       518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             ceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            89999987533222211 234567899999999999752       345666665

>KOG2041|consensus

Probab=98.48  E-value=4.4e-07  Score=60.96  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=86.2

Q ss_pred             eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE-eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY-RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      +++++++..+..+.|+.+.+.|-++..+|.|.+|-+-.+.-...+. ....+.|.+|+|+.+|..+....+||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            3456555555559999999999999999999999987754322222 234567899999999999999999998877655


Q ss_pred             CCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          93 SASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .. ..+..-. .......+.|++|.+.++.+ ..|.+++||..
T Consensus       145 dG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  145 DG-NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             cc-ceecchhcchheccceeecccHHHHHhhhcCCcEEEeccc
Confidence            43 3332222 23345688999998877765 67999999864

>KOG0309|consensus

Probab=98.48  E-value=1.2e-06  Score=59.03  Aligned_cols=115  Identities=20%  Similarity=0.283  Sum_probs=84.7

Q ss_pred             eeEeecCCC-ceeeEEeeC-CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEE
Q psy6446           2 GTVWDAVSG-EELHSFQHP-HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRL   78 (134)
Q Consensus         2 i~v~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l   78 (134)
                      +..||+++. .++..+... ..... ++|+.....+.+.+....+++||++.+..+...+++|...+..++|.. -...+
T Consensus       139 vh~wd~rSp~~p~ys~~~w~s~asq-Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  139 VHAWDMRSPHRPFYSTSSWRSAASQ-VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             ceeeeccCCCcceeeeecccccCce-eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh
Confidence            567898764 356555533 33444 999984445555566678999999998888888899999999999976 45568


Q ss_pred             EEeeCCCcEEEEecCCCc--eeEEEecCCCCeEEEEccCCc
Q psy6446          79 ISCAEDKTVRLWDVSASA--EVQKLEFGAVPNSLEISRDGT  117 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~--~~~~~~~~~~v~~~~~~~~~~  117 (134)
                      .+++.|++++.||.....  .........++....+-|-|.
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             cccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            899999999999987543  344445567788788888664

>KOG4640|consensus

Probab=98.48  E-value=1.9e-06  Score=56.79  Aligned_cols=71  Identities=14%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCe-EEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPN-SLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ...+..+.|+|.-..++++..+|.+.+..+. .+.+..++ ++..+. +++|.|||+.++++ .||+|++-|+++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            4568889999999999999999999999887 78888888 555565 99999999999999 789999999864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.48  E-value=5e-05  Score=45.76  Aligned_cols=125  Identities=17%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEc-cCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-----CCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFA-TDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-----HSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~   75 (134)
                      |..||..+++.. .+.... ... +.+. +++ .++.+...+ +.++|..+++.. .....     .....+.+++.|+|
T Consensus        24 i~~~~~~~~~~~-~~~~~~-~~G-~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G   97 (246)
T PF08450_consen   24 IYRVDPDTGEVE-VIDLPG-PNG-MAFDRPDG-RLYVADSGG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDG   97 (246)
T ss_dssp             EEEEETTTTEEE-EEESSS-EEE-EEEECTTS-EEEEEETTC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS
T ss_pred             EEEEECCCCeEE-EEecCC-Cce-EEEEccCC-EEEEEEcCc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCC
Confidence            444555544332 233222 444 7777 565 455555544 455588775422 12221     33567899999999


Q ss_pred             CEEEEeeCC--------CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          76 TRLISCAED--------KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +..++....        +.+..++.. ++.......-...+.++|+|+++.|..+  ..+.|..|++.
T Consensus        98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen   98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecc
Confidence            977765543        446666666 4544444344556899999999877654  45888888863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.46  E-value=5.5e-05  Score=45.57  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCC-CC--eEE-eCCC--CCEeEEEEeeCC
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDA-EP--TVY-RGHS--SGIKHVQFFKNN   75 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~-~~--~~~-~~~~--~~v~~~~~~~~~   75 (134)
                      ..++.. ++.......-... +.++|+|+++.|+ +-+..+.|..+++..... ..  ..+ ....  +..-.+++..+|
T Consensus       118 ~~~~~~-~~~~~~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  118 YRIDPD-GKVTVVADGLGFP-NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEETT-SEEEEEEEEESSE-EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             EEECCC-CeEEEEecCcccc-cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            344444 4443333343333 4499999998775 557788899999865332 11  112 1122  247789999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEecC-CCCeEEEEc-cCCcEEEE
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEIS-RDGTTITV  121 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~~  121 (134)
                      +..++....+.|.++|.. ++.+..+..+ ..+.+++|. ++...|.+
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            988888888999999987 8888877765 678999994 66555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832|consensus

Probab=98.45  E-value=3.2e-07  Score=62.97  Aligned_cols=118  Identities=16%  Similarity=0.262  Sum_probs=86.6

Q ss_pred             eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC--cEEEE
Q psy6446          13 LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK--TVRLW   90 (134)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~   90 (134)
                      .+.|..+...++|++|+.+.++|+.|+..|.|++++..++... ....+|..+++.+.-+.+|..+++.+.-.  ...+|
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-ccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            4455555677788999999999999999999999999997655 35688999999999999998877655433  46789


Q ss_pred             ecCC-CceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          91 DVSA-SAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        91 d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +... +.....   -..-.+++|+...+.-+.| ......+||+.|
T Consensus      1173 ~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1173 DASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred             ccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEeccc
Confidence            8764 222222   2344678888775544443 456788899875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.45  E-value=5.6e-05  Score=48.36  Aligned_cols=126  Identities=16%  Similarity=0.124  Sum_probs=77.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +..+|..+|+.+..++....+......  ++..+++++.++.+..+|..+++..... . ..+.+.+.-.. .+..++.+
T Consensus        77 v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~-~-~~~~~~~~p~v-~~~~v~v~  151 (377)
T TIGR03300        77 VVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA-K-LSSEVLSPPLV-ANGLVVVR  151 (377)
T ss_pred             EEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee-c-cCceeecCCEE-ECCEEEEE
Confidence            567888899998887744444332333  4678888889999999999887644321 1 11222211111 34567777


Q ss_pred             eCCCcEEEEecCCCceeEEEecCCCCe------EEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFGAVPN------SLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ..++.+..+|..+++.+.......+..      +.... ++..++...++.+..+|.+
T Consensus       152 ~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       152 TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEcc
Confidence            889999999999999887765433221      11111 2333333356778777764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=98.41  E-value=2.7e-06  Score=35.17  Aligned_cols=39  Identities=33%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEE
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYD   48 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~   48 (134)
                      ++++..+..+...+.++.|++++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455666775555666699999989999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.41  E-value=3.6e-06  Score=51.52  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE--eCC-----CCCEeEEEEee-CCCEEEEeeCCCcEEEEec
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY--RGH-----SSGIKHVQFFK-NNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~   92 (134)
                      ..+.++.|+.|...++++ .|-.|.+|++..........  +.|     ..-|++..|+| ....+...+..|.|++-|+
T Consensus       173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            344558888877777665 56789999987544322221  222     23578889999 4566777888899999999


Q ss_pred             CCCce------eEEEe-----c------CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          93 SASAE------VQKLE-----F------GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        93 ~~~~~------~~~~~-----~------~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +....      .....     +      -..|..+.|+++|+++++-.--++.+||++
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvn  309 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN  309 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecc
Confidence            85321      11111     0      246788999999999988666899999986

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.32  E-value=7.2e-05  Score=50.29  Aligned_cols=92  Identities=15%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             eeEeecCC-----CceeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCC----------eEEeCCCCC
Q psy6446           2 GTVWDAVS-----GEELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEP----------TVYRGHSSG   65 (134)
Q Consensus         2 i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~----------~~~~~~~~~   65 (134)
                      |.+.|..+     .+.+..+.-....-. +.++|||+++++++ .+..+.+.|+.+.+...          .....-...
T Consensus       298 V~VID~~t~~~~~~~v~~yIPVGKsPHG-V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG  376 (635)
T PRK02888        298 VPVVDGRKAANAGSALTRYVPVPKNPHG-VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG  376 (635)
T ss_pred             EEEEECCccccCCcceEEEEECCCCccc-eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence            66788877     355666665566666 99999999987765 48899999998744210          000111334


Q ss_pred             EeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          66 IKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      ....+|.++|....+-.-|..|..||+..
T Consensus       377 PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            56788888888888888999999999875

>smart00320 WD40 WD40 repeats

Probab=98.31  E-value=2.6e-06  Score=35.18  Aligned_cols=35  Identities=31%  Similarity=0.675  Sum_probs=30.7

Q ss_pred             eEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe
Q psy6446          57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      ..+..|...+.++.|.++++.+++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34567888999999999899999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621|consensus

Probab=98.31  E-value=1e-05  Score=54.13  Aligned_cols=93  Identities=17%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             eeEeecCCCceee-EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE-----eCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELH-SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY-----RGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~   75 (134)
                      +++|+-..++... ...+...++.....+++..+.+.|+..|.|.++.++...+....+     +.|...|++++|++++
T Consensus        57 lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~  136 (726)
T KOG3621|consen   57 VYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG  136 (726)
T ss_pred             EEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc
Confidence            5666655444322 222455566668889999999999999999999988744333222     2367889999999999


Q ss_pred             CEEEEeeCCCcEEEEecCC
Q psy6446          76 TRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~   94 (134)
                      ..+++|...|.|..-.+..
T Consensus       137 ~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  137 MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cEEeecCCCceEEEEEech
Confidence            9999999999998887766

>KOG1645|consensus

Probab=98.29  E-value=6.1e-06  Score=51.93  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-CEEEE
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLIS   80 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~   80 (134)
                      ++.+..+-+....+..+...+..++|+|..+ ++..++.+..|++.|+.+... ...+..+ ..+.+.+|.-|. .++..
T Consensus       176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeEE
Confidence            3444444444444444455555599999665 788899999999999998554 3455556 788999998755 56778


Q ss_pred             eeCCCcEEEEecCCCc
Q psy6446          81 CAEDKTVRLWDVSASA   96 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~   96 (134)
                      |..+|.|.+||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8889999999998644

>KOG2066|consensus

Probab=98.28  E-value=0.00014  Score=49.71  Aligned_cols=124  Identities=13%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             EeecCCCceeeEEeeCCCceeeEEEccC-----CcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           4 VWDAVSGEELHSFQHPHIVKSSVHFATD-----SYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         4 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |-.+-+.+...++..+..+.+ ++++|+     .+++++|+..| +.++.-+.... ....+..-.++|.++.|  .|++
T Consensus        97 I~sl~~~~~~~~~df~rpiks-ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~l  172 (846)
T KOG2066|consen   97 IGSLFTDDEITQYDFKRPIKS-IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNL  172 (846)
T ss_pred             EeeccCCccceeEecCCccee-EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcE
Confidence            333444444444554555555 999987     56799999988 77765443221 12235666789999999  4777


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecC-------CCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++=++.+| +++||+.+++.+..++.+       .....+.|.++ ..+++|...+|++..++
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence            77776666 899999988887766532       22356777655 56777766777776543

>KOG0882|consensus

Probab=98.26  E-value=8.2e-05  Score=47.82  Aligned_cols=97  Identities=18%  Similarity=0.156  Sum_probs=72.8

Q ss_pred             ecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC------CceeEEEe--------
Q psy6446          38 GSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA------SAEVQKLE--------  102 (134)
Q Consensus        38 ~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~--------  102 (134)
                      ...++.+.++|-....+ ......-|..+|..+.+++-+...++....|.|.-|....      .+....++        
T Consensus       118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f  197 (558)
T KOG0882|consen  118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF  197 (558)
T ss_pred             cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence            34578999999776553 3334456889999999999999999999999999998762      11111222        


Q ss_pred             --cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446         103 --FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus       103 --~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                        ......++.|+|++..+.. +.|..|++++.++
T Consensus       198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             cccccCccceEEccccCcccccCcccEEEEEEecc
Confidence              2456789999999988886 5789999998764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.24  E-value=9.8e-05  Score=38.69  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             EeEEEEee-CC---CEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          66 IKHVQFFK-NN---TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~-~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      |++|++.. ++   +.|+.|+.|..|++|+  ....+..+.....+.+++-...+++..+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            56666665 22   6799999999999996  457788888888999999888877666667888888764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.23  E-value=3.6e-05  Score=49.97  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec-CCCe--EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS-NDKN--IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |+++|+.++. +..+.+...+...-.|+|+|+.++..+ ..|.  |.+++.+....  ..+....+.-....|+|||+++
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEE
Confidence            6788888766 333554444444589999999987654 4454  55555554332  3333343444488899999999


Q ss_pred             EEeeCC-Cc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE
Q psy6446          79 ISCAED-KT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV  121 (134)
Q Consensus        79 ~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  121 (134)
                      +..+.. |.  |.+.|+.++...+.+..........|.+++..+..
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence            866643 44  66777766654555555555566777888876654

>KOG2395|consensus

Probab=98.22  E-value=0.00012  Score=48.05  Aligned_cols=129  Identities=14%  Similarity=0.178  Sum_probs=83.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCc-------EEEEecCCCeEEEEECCCCCC-CCeEEeCCC----CCEeEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-------RLATGSNDKNIRIYDLNKPDA-EPTVYRGHS----SGIKHV   69 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~----~~v~~~   69 (134)
                      ++-.|++.|+.+...+.+.. ++-+.+.|+.+       .-+.|-.|..|+-||++-... ......+|.    ....|.
T Consensus       358 l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~  436 (644)
T KOG2395|consen  358 LYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCF  436 (644)
T ss_pred             ceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccccee
Confidence            34567888888877774444 33366766542       234566678899999885332 111222221    223333


Q ss_pred             EEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          70 QFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        70 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      +-. ..-+++.|+.+|.|++||-...+....++ .+.+|..+..+.+|.+++++.+..+.+-++
T Consensus       437 aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  437 ATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            333 34578999999999999963333333333 478999999999999999887777766654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.00034  Score=45.20  Aligned_cols=124  Identities=9%  Similarity=-0.030  Sum_probs=75.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      +..+|..+|+.+...+.... .. +.  ..+..++.++.+|.+..+|..+++..................  .+..++.+
T Consensus       268 l~ald~~tG~~~W~~~~~~~-~~-~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~  341 (394)
T PRK11138        268 LVALDLRSGQIVWKREYGSV-ND-FA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVG  341 (394)
T ss_pred             EEEEECCCCCEEEeecCCCc-cC-cE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEE
Confidence            44567777777665542211 11 11  246678888889999999998765322111000111122222  35677888


Q ss_pred             eCCCcEEEEecCCCceeEEEecC-CCCe-EEEEccCCcEEEEecCCeEEEEeC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFG-AVPN-SLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~-~~v~-~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      +.+|.+...|..+++.+...... ..+. ...+ .+++.++.+.+|.|..++.
T Consensus       342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence            99999999999999988777642 2232 2222 3566666778899988764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00052  Score=44.20  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+.|..+.+......-...... ++++|+++.+.++..   ++.+.+.|..+.........+. .+ ..+++.|+++.+
T Consensus        98 v~vid~~~~~~~~~~~vG~~P~~-~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~v  174 (381)
T COG3391          98 VSVIDTATNTVLGSIPVGLGPVG-LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKV  174 (381)
T ss_pred             EEEEcCcccceeeEeeeccCCce-EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeE
Confidence            56677666666666664445556 999999988877655   6788888887765444333332 23 899999999977


Q ss_pred             EEee-CCCcEEEEecCCCceeE-----EEecCCCCeEEEEccCCcEEEEe--cC--CeEEEEeCC
Q psy6446          79 ISCA-EDKTVRLWDVSASAEVQ-----KLEFGAVPNSLEISRDGTTITVT--HG--SCVTFLDAN  133 (134)
Q Consensus        79 ~~~~-~d~~i~~~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~--~~--~~i~i~d~~  133 (134)
                      +... .++.+.+.|........     ..........+.++|+|..+...  .+  +.+...|..
T Consensus       175 yv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         175 YVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             EEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence            6554 67899999976655443     12234556789999999866543  22  577777764

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.16  E-value=9.9e-05  Score=49.93  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=61.6

Q ss_pred             eeeEEEccCCcEEEEec------CCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC----------
Q psy6446          23 KSSVHFATDSYRLATGS------NDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED----------   84 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~------~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   84 (134)
                      +...+.+|+|+.++...      .|.  .+.+.+..  ........+  .......|+|+++.+++....          
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            34488999999887654      243  45555542  222222233  247889999998887776432          


Q ss_pred             --CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEE
Q psy6446          85 --KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF  129 (134)
Q Consensus        85 --~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i  129 (134)
                        +.+.+.++..+....  ..+..|..+.|+|||..++...+++|.+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~V  472 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYL  472 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEE
Confidence              223333333332222  2356799999999999887655666655

>KOG4190|consensus

Probab=98.14  E-value=6.6e-06  Score=54.15  Aligned_cols=107  Identities=18%  Similarity=0.325  Sum_probs=73.0

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      +.--.+.+.+++++.|.+|++|.++...      ....++..|..+|.++.|-.+-+++++  -|+.|.+||.--++.+.
T Consensus       741 i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~La  818 (1034)
T KOG4190|consen  741 IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLA  818 (1034)
T ss_pred             HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhH
Confidence            4444467889999999999999987532      123457789999999999988888765  46789999987666665


Q ss_pred             EEe---cCCCCeEEEEccC--CcEEEEe--cCCeEEEEeCCC
Q psy6446         100 KLE---FGAVPNSLEISRD--GTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus       100 ~~~---~~~~v~~~~~~~~--~~~l~~~--~~~~i~i~d~~t  134 (134)
                      .+.   ..+.+..+.--|+  ...+.++  ...+|+++|.++
T Consensus       819 q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  819 QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             hhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            443   1233333333343  3344333  457888888753

>KOG2114|consensus

Probab=98.13  E-value=0.001  Score=46.21  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             eeEeecCCC------cee---eEEeeC----CCceeeEEEccCCcEEEEecCCCeEEEEECCC---CCCCCeEEeCCCCC
Q psy6446           2 GTVWDAVSG------EEL---HSFQHP----HIVKSSVHFATDSYRLATGSNDKNIRIYDLNK---PDAEPTVYRGHSSG   65 (134)
Q Consensus         2 i~v~d~~~~------~~~---~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~~   65 (134)
                      ++|||++.-      .++   ..+.+.    ..+.++++.+.+-+.+++|-.+|.|..+.=+-   ...-......-..+
T Consensus        94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p  173 (933)
T KOG2114|consen   94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP  173 (933)
T ss_pred             EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence            789998532      233   222212    34566699999999999999999999875321   11111112223568


Q ss_pred             EeEEEEeeCCCEEEEeeCCCcEEEEecCCCce-eEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          66 IKHVQFFKNNTRLISCAEDKTVRLWDVSASAE-VQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |+.+.+..+++.++-+..-..|.+|.+....+ ...+. ++....|..+++....++++++..+.+||..
T Consensus       174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd  243 (933)
T KOG2114|consen  174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD  243 (933)
T ss_pred             ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence            99999998888744344445689998874442 22233 4667889999887665677777778888753

>KOG3617|consensus

Probab=98.13  E-value=3.5e-06  Score=57.86  Aligned_cols=84  Identities=20%  Similarity=0.313  Sum_probs=67.1

Q ss_pred             CCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcE
Q psy6446           8 VSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTV   87 (134)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   87 (134)
                      .+|++...+..+-.+.+ ++|+|..-.|+.|=.-|.+.+|..++.+ .......|..++..+.|+|+|..++++..-|.+
T Consensus        48 dtGEPqr~Vt~P~hatS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v  125 (1416)
T KOG3617|consen   48 DTGEPQRDVTYPVHATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSV  125 (1416)
T ss_pred             cCCCCCcccccceehhh-hccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCCCCeEEEcCCCcee
Confidence            34555444444444455 9999988888999889999999987744 345567799999999999999999999999999


Q ss_pred             EEEecC
Q psy6446          88 RLWDVS   93 (134)
Q Consensus        88 ~~~d~~   93 (134)
                      .+|.+.
T Consensus       126 ~lwr~d  131 (1416)
T KOG3617|consen  126 HLWRYD  131 (1416)
T ss_pred             EEEEee
Confidence            999876

>KOG1008|consensus

Probab=98.12  E-value=4.4e-07  Score=59.98  Aligned_cols=112  Identities=15%  Similarity=0.274  Sum_probs=78.5

Q ss_pred             CCceeeEEEcc-CCcEEEEec----CCCeEEEEECCCC----CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEE
Q psy6446          20 HIVKSSVHFAT-DSYRLATGS----NDKNIRIYDLNKP----DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW   90 (134)
Q Consensus        20 ~~~~~~~~~~~-~~~~l~~~~----~d~~v~i~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   90 (134)
                      ....++++|++ |.+.|++|-    .|..+.|||+.+.    +....+..+.......++|-.+.+.+++|...+.+.++
T Consensus       102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if  181 (783)
T KOG1008|consen  102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF  181 (783)
T ss_pred             cccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhh
Confidence            34455699998 667777773    3568999999875    11112222244456688888788888899988899999


Q ss_pred             ecCCCceeEEEecCCCCeEEEEcc-CCcEEEEecCCeEEEEe
Q psy6446          91 DVSASAEVQKLEFGAVPNSLEISR-DGTTITVTHGSCVTFLD  131 (134)
Q Consensus        91 d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~i~i~d  131 (134)
                      |++........-....+..+..+| .+.+++...||.|.+||
T Consensus       182 dlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD  223 (783)
T KOG1008|consen  182 DLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeecc
Confidence            998433222222234677888889 67888888899999999

>KOG1912|consensus

Probab=98.09  E-value=0.00043  Score=47.67  Aligned_cols=132  Identities=10%  Similarity=0.107  Sum_probs=90.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC---C---eEEeCCCC---------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE---P---TVYRGHSS---------   64 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---~---~~~~~~~~---------   64 (134)
                      ++.+|+..+|+...++.....+.+|+.+.| |.+.+..-+..|.+.+.+.-...++   .   +....|..         
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            478999999999999997778888899999 7778877777787777664321111   0   11111111         


Q ss_pred             ----------------CEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCC--cEEEEe-cC
Q psy6446          65 ----------------GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDG--TTITVT-HG  124 (134)
Q Consensus        65 ----------------~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~--~~l~~~-~~  124 (134)
                                      -...++|+|.-+.++-..-...+.++|++-..++..... .+.+.-+.+-|++  ..+.+. .+
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n  295 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN  295 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence                            013456788766666566667899999998888887774 3445567777776  356665 68


Q ss_pred             CeEEEEeC
Q psy6446         125 SCVTFLDA  132 (134)
Q Consensus       125 ~~i~i~d~  132 (134)
                      |.+.+|-.
T Consensus       296 G~ltirvr  303 (1062)
T KOG1912|consen  296 GRLTIRVR  303 (1062)
T ss_pred             CeEEEEEe
Confidence            99988854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.07  E-value=0.0001  Score=45.50  Aligned_cols=114  Identities=18%  Similarity=0.344  Sum_probs=78.6

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCC-CCC---eEEeCCC------------CCEeEEEEeeCC--CEEEEe
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEP---TVYRGHS------------SGIKHVQFFKNN--TRLISC   81 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~---~~~~~~~------------~~v~~~~~~~~~--~~l~~~   81 (134)
                      ...++++.|...|.++++|...|.|.+|.-.... +..   ..+.+|.            ..|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3456679999999999999999999998765422 111   1233443            357788887643  457788


Q ss_pred             eCCCcEEEEecCCCce-------------------------------------eEE-------EecCCCCeEEEEccCCc
Q psy6446          82 AEDKTVRLWDVSASAE-------------------------------------VQK-------LEFGAVPNSLEISRDGT  117 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~-------------------------------------~~~-------~~~~~~v~~~~~~~~~~  117 (134)
                      +.|.+|++|.+.....                                     +..       -.|...+.+++|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998754310                                     000       00223467888988888


Q ss_pred             EEEEecCCeEEEEeCC
Q psy6446         118 TITVTHGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~~~~~i~i~d~~  133 (134)
                      .++++.+-+|.+|+++
T Consensus       186 t~lSaDdLrINLWnl~  201 (460)
T COG5170         186 TLLSADDLRINLWNLE  201 (460)
T ss_pred             eeeeccceeeeecccc
Confidence            8888888899999874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.07  E-value=0.00026  Score=37.12  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEE
Q psy6446          33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI  112 (134)
Q Consensus        33 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~  112 (134)
                      +.|++|+.|..|++|+-..   ....... ...|..+.-... ..++.+.++|+|-+|+-  ...+...+.+..+.++.+
T Consensus        16 ~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~   88 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAF   88 (111)
T ss_pred             ceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEE
Confidence            6799999999999998543   3333333 356777766654 66888999999999974  445555666666777665


Q ss_pred             cc-C--C-cEEEEe-cCCeEEE
Q psy6446         113 SR-D--G-TTITVT-HGSCVTF  129 (134)
Q Consensus       113 ~~-~--~-~~l~~~-~~~~i~i  129 (134)
                      .. +  | .-|+++ ++|.|-+
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEEe
Confidence            43 3  3 356666 6787743

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.06  E-value=0.00015  Score=51.49  Aligned_cols=108  Identities=11%  Similarity=0.088  Sum_probs=73.3

Q ss_pred             CceeeEEEccCCcEEEEecC------CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC---CCcEEEEe
Q psy6446          21 IVKSSVHFATDSYRLATGSN------DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE---DKTVRLWD   91 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d   91 (134)
                      ..+. +.|..||.++++.+-      ...+++|+-. +. +...-..-.+--..++|.|.|+.+++.-.   ...|.+|.
T Consensus       211 ~~~~-ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  211 GRVR-ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CceE-EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            3444 999999999998764      2578999865 22 21121222344467899999999987654   33567775


Q ss_pred             cCCCceeEEEec-----CCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          92 VSASAEVQKLEF-----GAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        92 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                       ++|-....+..     ...+..+.|++++..|+.--...|.+|-.
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~  332 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTR  332 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEe
Confidence             44544444432     45789999999999999865555999865

>KOG1008|consensus

Probab=98.01  E-value=1.5e-06  Score=57.55  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=81.3

Q ss_pred             CeeEeecCCC--ceee--EEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-C
Q psy6446           1 MGTVWDAVSG--EELH--SFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-N   74 (134)
Q Consensus         1 ~i~v~d~~~~--~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~   74 (134)
                      .+.|||+.++  .+..  .+.. ......+++|-.+.+.+++|.....+.++|++......  .......+..+...| .
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--~svnTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--SSVNTKYVQGITVDPFS  207 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh--hhhhhhhcccceecCCC
Confidence            3679999876  2222  2221 22222347888888899999998899999998432111  112334566777888 6


Q ss_pred             CCEEEEeeCCCcEEEEe-cCCCc-eeEEEec-----CCCCeEEEEccCCc--EEEEecC-CeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWD-VSASA-EVQKLEF-----GAVPNSLEISRDGT--TITVTHG-SCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d-~~~~~-~~~~~~~-----~~~v~~~~~~~~~~--~l~~~~~-~~i~i~d~~  133 (134)
                      ..++++.. |+.+.+|| .++-+ ++..+.+     ...+..++|.|...  ..+...| +.|+.||+.
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            77776655 99999999 33322 2222222     12478899999653  3333444 899999874

>KOG3617|consensus

Probab=97.99  E-value=4.9e-05  Score=52.63  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=78.9

Q ss_pred             CceeeEEEccCCcEEEEecC----CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          21 IVKSSVHFATDSYRLATGSN----DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      .+.+...|+|...++++++.    .|.|.||- +++.+...  ...+-.+++++|+|..-.|+.+=+-|.+.+|...+.+
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~--Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD--VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc--cccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            34444789999999887753    57888874 34442211  1223345779999988888888888999999876544


Q ss_pred             ee-EEEecCCCCeEEEEccCCcEEEEecC-CeEEEEeC
Q psy6446          97 EV-QKLEFGAVPNSLEISRDGTTITVTHG-SCVTFLDA  132 (134)
Q Consensus        97 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~d~  132 (134)
                      .. ....|+.++..+.|+|+|..++++.. |.+.+|..
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            32 23347889999999999999998854 99999865

>KOG1920|consensus

Probab=97.97  E-value=0.00047  Score=49.34  Aligned_cols=129  Identities=14%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec---CCCeEEEEECCCCCCC--CeEEeCCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS---NDKNIRIYDLNKPDAE--PTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      |+|||-+ |..-..-+.....-.+++|.|.|..+++-.   .|+.|.++.-+.-..-  ...+.....++..++|+.++.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence            6788865 544433334444556699999999998753   4557888875542211  111223334589999999999


Q ss_pred             EEEE---eeCCCcEEEEecCCCceeEEE--ecCCCCeEEEEccCCc--EEEEecCCeEEEEeC
Q psy6446          77 RLIS---CAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDGT--TITVTHGSCVTFLDA  132 (134)
Q Consensus        77 ~l~~---~~~d~~i~~~d~~~~~~~~~~--~~~~~v~~~~~~~~~~--~l~~~~~~~i~i~d~  132 (134)
                      .|+.   ......|++|-+.+-......  ..+... -+.|+|...  ..+...+|...++|.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence            9987   444455999987765433222  222222 277887542  233345566666553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.95  E-value=0.00064  Score=43.93  Aligned_cols=97  Identities=10%  Similarity=-0.055  Sum_probs=58.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC----CEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS----GIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~   77 (134)
                      +..+|.++|+.+...+......+....  .+..++.+..++.+..+|..+++...........    .......  .+..
T Consensus       132 l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~  207 (394)
T PRK11138        132 VYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGG  207 (394)
T ss_pred             EEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCE
Confidence            567888899988887744433332222  2456777888899999999887654322111000    0011111  2345


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      ++.+..++.+...|..+++......
T Consensus       208 v~~~~~~g~v~a~d~~~G~~~W~~~  232 (394)
T PRK11138        208 AIVGGDNGRVSAVLMEQGQLIWQQR  232 (394)
T ss_pred             EEEEcCCCEEEEEEccCChhhheec
Confidence            6667788888888888887665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.94  E-value=0.00019  Score=49.84  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             eeEeecCC-Cc-eee-EEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVS-GE-ELH-SFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~-~~-~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +..||.+- +. ++. ...  ....-++|++-+.+| +|++|+.+|.||+||- .+......+.+-..+|.+++.+.||+
T Consensus       554 lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGk  631 (794)
T PF08553_consen  554 LFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGK  631 (794)
T ss_pred             eEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCc
Confidence            56778763 22 221 111  234445656665555 7999999999999994 34444455677789999999999999


Q ss_pred             EEEEeeCCCcEEEEec
Q psy6446          77 RLISCAEDKTVRLWDV   92 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~   92 (134)
                      ++++.+. ..+.+++.
T Consensus       632 wilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  632 WILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEEeec-ceEEEEEE
Confidence            9876554 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.0015  Score=40.20  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=77.7

Q ss_pred             eEeecCCCceeeEEee-C-CCceeeEEEccCCcEEEEecC-----CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           3 TVWDAVSGEELHSFQH-P-HIVKSSVHFATDSYRLATGSN-----DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      .++|....+....+.. . .....--.|+|||.+|...-+     .|.|=+||.+.+-...-.+..|.-....+.+.+||
T Consensus        94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG  173 (366)
T COG3490          94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG  173 (366)
T ss_pred             EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence            5778777766555541 1 122223678999999987644     36899999987554445677788788999999999


Q ss_pred             CEEEEeeC------------------CCcEEEEecCCCceeEEEec-----CCCCeEEEEccCCcEEEEe
Q psy6446          76 TRLISCAE------------------DKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        76 ~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~  122 (134)
                      +.++.+..                  ..++.+.|-.+++.+.+...     .-.++.++..+||..++.+
T Consensus       174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            99876543                  11334444445554443322     2356777788888766654

>KOG4649|consensus

Probab=97.87  E-value=0.0016  Score=39.54  Aligned_cols=94  Identities=12%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCC-eE
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NS  109 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v-~~  109 (134)
                      -|++++.|...|.+++.+..++..... +..-..-=......+++..+..++.|+.....|.++..++...+.++.+ .+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~-f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWN-FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheee-eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence            367799999999999999999865432 2222211123445568999999999999999999999888887754433 33


Q ss_pred             EEEcc-CCcEEEEecCC
Q psy6446         110 LEISR-DGTTITVTHGS  125 (134)
Q Consensus       110 ~~~~~-~~~~l~~~~~~  125 (134)
                      -+..| ++.+.++...|
T Consensus       141 P~i~~g~~sly~a~t~G  157 (354)
T KOG4649|consen  141 PVIAPGDGSLYAAITAG  157 (354)
T ss_pred             ceecCCCceEEEEeccc
Confidence            44455 44444443333

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.87  E-value=0.0033  Score=42.97  Aligned_cols=105  Identities=13%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe--eCCCEEEEeeCCCcEEEEecC---------C
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLWDVS---------A   94 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~---------~   94 (134)
                      +.-+.-++..++-+....+.|||.+.+.......-...+.|.+++|.  |+++.+++.+-.+.|.++--.         .
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            44444455555555566899999987652222111446889999996  589999999988888888431         1


Q ss_pred             CceeEEEe----cCCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          95 SAEVQKLE----FGAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        95 ~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      ...++.+.    .+.+|....|.++|.+++++ ++.+.++|
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~d  154 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFD  154 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEEC
Confidence            22333333    24678899999998766554 56777775

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079|consensus

Probab=97.85  E-value=0.00014  Score=51.34  Aligned_cols=92  Identities=12%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-CCCCeE
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNS  109 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~  109 (134)
                      .+..++.|+..|.+-..|+...-.+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++....+.. ..+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3556888888899988888763222111223457899999999999999999999999999999888887763 334333


Q ss_pred             ---EEEccCCcEEEEe
Q psy6446         110 ---LEISRDGTTITVT  122 (134)
Q Consensus       110 ---~~~~~~~~~l~~~  122 (134)
                         +.+..++..+.++
T Consensus       178 vi~v~~t~~nS~llt~  193 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTS  193 (1206)
T ss_pred             EEEEEEeCCCcEEEEc
Confidence               3334444544444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.00039  Score=45.52  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      |..|...+.+ .|.+||..+++.++.+.... +..+.|+++|.+++...+..+.+++.
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            6666555544 89999999999999887553 89999999999999877777777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114|consensus

Probab=97.84  E-value=0.00064  Score=47.11  Aligned_cols=104  Identities=15%  Similarity=0.237  Sum_probs=70.9

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC-EeEEEEeeCCCEEEEeeCCC-----cEEEEecCCC----
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG-IKHVQFFKNNTRLISCAEDK-----TVRLWDVSAS----   95 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~----   95 (134)
                      -.|++.+..++.|+.+|.|.+.+-.  ......+.++... |..+....+..+|++.++|+     .+++||+...    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            4567888899999999988877643  2332345556555 55555544557888877765     4899998632    


Q ss_pred             --cee---EEEe-----cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          96 --AEV---QKLE-----FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        96 --~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                        .+.   +.+.     .+.++.+++.+.+-..+++| .+|.|..+.
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence              223   2222     24567899999998899999 678887763

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0027  Score=41.04  Aligned_cols=106  Identities=14%  Similarity=0.260  Sum_probs=78.1

Q ss_pred             EEEccCCcEEEE-ecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC---CCcEEEEecCCCceeEEE
Q psy6446          26 VHFATDSYRLAT-GSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE---DKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        26 ~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~  101 (134)
                      +..++.++.++. ...++.+.+.|..+.........+.  ....++++|+++.+..+..   ++.+.+.|..+.+.....
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            777787775544 4456889999976654433333333  6788999999988776555   688999999999988886


Q ss_pred             ecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         102 EFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       102 ~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ........++++|+|..+...  .++.|.+.|..
T Consensus       157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            655444899999999876654  46899998864

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.84  E-value=0.00014  Score=32.16  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE   97 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   97 (134)
                      ...|..++|+|....++.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999988 5544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.79  E-value=0.0028  Score=39.72  Aligned_cols=112  Identities=11%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCceeeEEeeCCCceeeEEEccCCcEEEEecC-CCeEEEEECCC--CC---C-CCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           9 SGEELHSFQHPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNK--PD---A-EPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~--~~---~-~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      .+..++.+...-.+-+.++||||++.++.+.. .+.+.-+++..  ..   . .........+..-.++...+|.+.+++
T Consensus       151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence            45555555443344455999999987776644 47788887762  11   1 111222334566677777788877644


Q ss_pred             eCCC-cEEEEecCCCceeEEEecC-CCCeEEEEc-cCCcEEEE
Q psy6446          82 AEDK-TVRLWDVSASAEVQKLEFG-AVPNSLEIS-RDGTTITV  121 (134)
Q Consensus        82 ~~d~-~i~~~d~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~~  121 (134)
                      ..+| .|..|+.. ++.+.....+ ..+.+++|- |+.+.|.+
T Consensus       231 ~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         231 VWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             ccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            4444 89999987 8888888876 777888885 44555544

>KOG0882|consensus

Probab=97.77  E-value=0.0015  Score=42.43  Aligned_cols=115  Identities=11%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC-----CCCCe---------EEeCCCCCEeEEEEeeCCCEEEEeeC
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP-----DAEPT---------VYRGHSSGIKHVQFFKNNTRLISCAE   83 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-----~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (134)
                      |..++.. +..++-+..+.+....|.|..|.....     .....         .+........++.|+|++..+.+-+.
T Consensus       143 H~sPV~~-i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  143 HFSPVKK-IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             ccCceEE-EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            4445554 999999999999998999999987731     00100         11223456789999999999999999


Q ss_pred             CCcEEEEecCCCceeEEEec---------------------------------C-CCCeEEEEccCCcEEEEecCCeEEE
Q psy6446          84 DKTVRLWDVSASAEVQKLEF---------------------------------G-AVPNSLEISRDGTTITVTHGSCVTF  129 (134)
Q Consensus        84 d~~i~~~d~~~~~~~~~~~~---------------------------------~-~~v~~~~~~~~~~~l~~~~~~~i~i  129 (134)
                      |..|++++.++++..+.+..                                 + ..-....|+..|++++-+.-=.|++
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikv  301 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKV  301 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEE
Confidence            99999999998875543321                                 0 1224567888888887664444555


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      .++.
T Consensus       302 in~~  305 (558)
T KOG0882|consen  302 INLD  305 (558)
T ss_pred             EEee
Confidence            5543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.76  E-value=0.0033  Score=39.67  Aligned_cols=128  Identities=13%  Similarity=0.063  Sum_probs=77.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC----------CCeEEEEECCCCCCCCeE-EeC-CC----CC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN----------DKNIRIYDLNKPDAEPTV-YRG-HS----SG   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~-~~~-~~----~~   65 (134)
                      ++++|..+++.+-.+...-.. . +..+|+++.+++++.          .-.|.+||..+....... +.. ++    ..
T Consensus        19 v~viD~d~~k~lGmi~~g~~~-~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   19 VYVIDADSGKLLGMIDTGFLG-N-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEETTTTEEEEEEEEESSE-E-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             EEEEECCCCcEEEEeecccCC-c-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            678999999988887743222 2 567899999887532          336899999875322111 111 11    22


Q ss_pred             EeEEEEeeCCCEEEEee--CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          66 IKHVQFFKNNTRLISCA--EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ....+++.|+++++...  -...|.+.|+..++.+..+..+++..-.- .++..+...|+||.+.-..+
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP-~~~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP-SGNRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE-EETTEEEEEETTSCEEEEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe-cCCCceEEEecCCceEEEEE
Confidence            34567888999887543  34579999999998888776554322211 22334556677776665544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.00024  Score=45.21  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             ccCCcEEEEe---------cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          29 ATDSYRLATG---------SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        29 ~~~~~~l~~~---------~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      |||+++++..         +..+...++|+.++...  .+......+....|+|+++.++... ++.|.+.+..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            4666666553         22457889999885321  1222256789999999999988775 4679999887764333


Q ss_pred             EEecC------------------CCCeEEEEccCCcEEEEe--cCCeEEE
Q psy6446         100 KLEFG------------------AVPNSLEISRDGTTITVT--HGSCVTF  129 (134)
Q Consensus       100 ~~~~~------------------~~v~~~~~~~~~~~l~~~--~~~~i~i  129 (134)
                      ....+                  ..-..+-||||+++|+..  .+..|..
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~  127 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE  127 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce
Confidence            22111                  123678899999988864  3344433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.004  Score=40.41  Aligned_cols=108  Identities=17%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             eeEEEccCCcEEEEecCCCeEEEEECCCCCC------------------------------------------CCeEEeC
Q psy6446          24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDA------------------------------------------EPTVYRG   61 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~------------------------------------------~~~~~~~   61 (134)
                      ..+.|.++...|++|...|.|-+|.....+.                                          +...+..
T Consensus         5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~   84 (395)
T PF08596_consen    5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA   84 (395)
T ss_dssp             EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred             EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence            3477777777788887888777765432110                                          0012233


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec---------CCCCeEEEEcc-----CC---cEEEEe-c
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---------GAVPNSLEISR-----DG---TTITVT-H  123 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---------~~~v~~~~~~~-----~~---~~l~~~-~  123 (134)
                      ..++|++++.+ |--+++.|+++|.+.+.|++....+..-..         ...+.++.|..     |+   -.+++| .
T Consensus        85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn  163 (395)
T PF08596_consen   85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN  163 (395)
T ss_dssp             -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred             cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence            46789999987 667899999999999999998887776442         23466777762     33   245555 5


Q ss_pred             CCeEEEEeC
Q psy6446         124 GSCVTFLDA  132 (134)
Q Consensus       124 ~~~i~i~d~  132 (134)
                      .|.+.+|.+
T Consensus       164 ~G~v~~fkI  172 (395)
T PF08596_consen  164 SGNVLTFKI  172 (395)
T ss_dssp             TSEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            699988865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1275|consensus

Probab=97.72  E-value=0.0001  Score=51.17  Aligned_cols=89  Identities=21%  Similarity=0.244  Sum_probs=66.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCC-C--eEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAE-P--TVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |+|||++..+.+.-++-+...-. +.|.| -...+++++..|...+-|..+...+ .  .........+..++++++++.
T Consensus       248 vkVYDLRmmral~PI~~~~~P~f-lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a  326 (1118)
T KOG1275|consen  248 VKVYDLRMMRALSPIQFPYGPQF-LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA  326 (1118)
T ss_pred             hhhhhhhhhhccCCcccccCchh-hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCce
Confidence            57899988887777764444444 88888 4567888888999999884432222 2  233334456899999999999


Q ss_pred             EEEeeCCCcEEEEe
Q psy6446          78 LISCAEDKTVRLWD   91 (134)
Q Consensus        78 l~~~~~d~~i~~~d   91 (134)
                      ++.+..+|.|.+|.
T Consensus       327 lafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  327 LAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEEecccCcEeeec
Confidence            99999999999997

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.71  E-value=0.00024  Score=30.60  Aligned_cols=28  Identities=11%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             CCeEEEEccCC---cEEEEecC-CeEEEEeCC
Q psy6446         106 VPNSLEISRDG---TTITVTHG-SCVTFLDAN  133 (134)
Q Consensus       106 ~v~~~~~~~~~---~~l~~~~~-~~i~i~d~~  133 (134)
                      .+++++|+|++   .+|+.+.+ |.|.++|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            57899999854   47777754 999999997

It contains a characteristic DLL sequence motif.

>KOG1920|consensus

Probab=97.70  E-value=0.0063  Score=44.09  Aligned_cols=68  Identities=15%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEE
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW   90 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   90 (134)
                      ..+++ +.|..+.+.++.+..+|.|.+-|..+...  .....-...|.+++|+||++.++.....+++.+-
T Consensus        69 ~~i~s-~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVS-VQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEE-EEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence            34555 88888999999999999999988776432  2233456789999999999999988887776554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.69  E-value=0.0034  Score=38.31  Aligned_cols=42  Identities=12%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG  104 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  104 (134)
                      ...|..|..+||++.|++..-+|.|.+|++..-+.......+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            467999999999999999999999999999987777766543

>KOG4649|consensus

Probab=97.69  E-value=0.0035  Score=38.16  Aligned_cols=101  Identities=11%  Similarity=0.025  Sum_probs=71.7

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCC-eE
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NS  109 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v-~~  109 (134)
                      ...+++.|+..+.+.--|..++........  ...+.+-+.- -+++++.|...|.+.+.+..+|.....+.....| ..
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            356778888888888888888764332222  2333333322 4677999999999999999999888877754444 34


Q ss_pred             EEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446         110 LEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       110 ~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ...++++..+.++ .|++.+..|.++
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccc
Confidence            4567888888876 689999888764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.68  E-value=0.0028  Score=41.27  Aligned_cols=107  Identities=20%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             eEEEccCCcEEEEe-cCC----CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC-----------CcEE
Q psy6446          25 SVHFATDSYRLATG-SND----KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED-----------KTVR   88 (134)
Q Consensus        25 ~~~~~~~~~~l~~~-~~d----~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~   88 (134)
                      ...++|++++++.+ +..    ..++++|+.+++.....+...  ....+.|.++++.++....+           ..|.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            47889999998865 222    369999999875333222221  12239999998887654422           2378


Q ss_pred             EEecCCCcee--EEEecC--CC-CeEEEEccCCcEEEEe--c--C-CeEEEEeCC
Q psy6446          89 LWDVSASAEV--QKLEFG--AV-PNSLEISRDGTTITVT--H--G-SCVTFLDAN  133 (134)
Q Consensus        89 ~~d~~~~~~~--~~~~~~--~~-v~~~~~~~~~~~l~~~--~--~-~~i~i~d~~  133 (134)
                      .|.+.+....  ..+...  .. ...+..+++++++++.  .  + ..+.+.|+.
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence            8888776543  333322  22 4578889999988753  2  3 467777664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1832|consensus

Probab=97.65  E-value=3.2e-05  Score=53.76  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |++|++.+|.....+..++..++-+.-+.+|..+++.+.-.  ...+|++.........+.    .-.++.|+...+.-+
T Consensus      1125 ik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~ 1200 (1516)
T KOG1832|consen 1125 IKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA 1200 (1516)
T ss_pred             EEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHH
Confidence            78999999999888885555555488888998877665433  467899876443333332    346788887655555


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec-----CCCCeEEEEccCCcEEE
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTIT  120 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~  120 (134)
                      .|.......+||++++....++..     ...-++..|+|+..+++
T Consensus      1201 ~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            555556789999999887766432     22336778888776655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.63  E-value=0.00038  Score=30.79  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=25.5

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECC
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLN   50 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~   50 (134)
                      +.++.|+|...+||.++.+|.|.++.++
T Consensus        14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   14 VSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999984

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.63  E-value=0.0062  Score=39.74  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             CeeEeecCCCceeeEEe-eCCC--ceeeEEEcc--CCcEEEE-ecCCCeEEEEEC-CCCCC----CCeE---------E-
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHI--VKSSVHFAT--DSYRLAT-GSNDKNIRIYDL-NKPDA----EPTV---------Y-   59 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~--~~~~~~~~~--~~~~l~~-~~~d~~v~i~~~-~~~~~----~~~~---------~-   59 (134)
                      ++.+||+.+.+.++++. +.+.  ... +.|.+  +..+-++ +...++|..|-- ..+.-    ....         + 
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pLE-vRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp  301 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPLE-VRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP  301 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEEE-EEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceEE-EEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence            47899999999999998 3333  233 66654  3444333 334455555443 22110    0000         0 


Q ss_pred             ------eCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCceeEEE---ecCC-----------------CCeEEEE
Q psy6446          60 ------RGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAEVQKL---EFGA-----------------VPNSLEI  112 (134)
Q Consensus        60 ------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~---~~~~-----------------~v~~~~~  112 (134)
                            ..-..-++.+..|.|.++|..+. .+|.++.||+......+..   ...+                 ..+-+..
T Consensus       302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql  381 (461)
T PF05694_consen  302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL  381 (461)
T ss_dssp             GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred             ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence                  01135689999999999987554 5899999999875443322   2222                 2355778


Q ss_pred             ccCCcEEEEe
Q psy6446         113 SRDGTTITVT  122 (134)
Q Consensus       113 ~~~~~~l~~~  122 (134)
                      |.||+.+..+
T Consensus       382 S~DGkRlYvT  391 (461)
T PF05694_consen  382 SLDGKRLYVT  391 (461)
T ss_dssp             -TTSSEEEEE
T ss_pred             ccCCeEEEEE
Confidence            8888776643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.57  E-value=0.0049  Score=37.84  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=60.5

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE----------
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK----------  100 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------  100 (134)
                      .++.|+.|..+| +.+++...........  +...|..+...|+-+.++.-+ |+.+.++++..-.....          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            578899998888 8999983333332222  334499999999877776654 48999999876443331          


Q ss_pred             -----EecCCCCeEEE---EccCCcEEEEecCCeEEEEeC
Q psy6446         101 -----LEFGAVPNSLE---ISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus       101 -----~~~~~~v~~~~---~~~~~~~l~~~~~~~i~i~d~  132 (134)
                           +.....+...+   -......+++....+|.+|..
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~  121 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEW  121 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEE
Confidence                 11112233333   112234566666678888765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.0088  Score=39.48  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCC---------CC-CCeEEeCCCCCEeEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKP---------DA-EPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~---------~~-~~~~~~~~~~~v~~~~~   71 (134)
                      |.+||+++++.+..++... +.. +.|++++++++..+.+ .+.+++.+..         -. ...........|.+..|
T Consensus       128 i~~yDw~~~~~i~~i~v~~-vk~-V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W  204 (443)
T PF04053_consen  128 ICFYDWETGKLIRRIDVSA-VKY-VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCW  204 (443)
T ss_dssp             EEEE-TTT--EEEEESS-E--EE-EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEE
T ss_pred             EEEEEhhHcceeeEEecCC-CcE-EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEE
Confidence            7899999999999998553 444 9999999999988765 5777765432         00 11223332567888888


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-EecCCeEEEEeC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VTHGSCVTFLDA  132 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~i~d~  132 (134)
                      ..+  .++-.... .++-  +..|...-....+.++.-+...|....+. .-.++.+..+.+
T Consensus       205 ~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  205 VED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             ETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             EcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            644  44433333 5554  34444333333355666667777544444 446777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.53  E-value=0.0064  Score=36.97  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCC--CCCCCeEE--------eCCCCCEeEEEEeeC-CCEEEEeeCCCcEEE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNK--PDAEPTVY--------RGHSSGIKHVQFFKN-NTRLISCAEDKTVRL   89 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~--------~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~   89 (134)
                      ..+-.++|+|.++.|+++-......++.++.  ........        ......+.+++++|. +..++.+.....+..
T Consensus       118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~  197 (248)
T PF06977_consen  118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLE  197 (248)
T ss_dssp             S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEE
T ss_pred             cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEE
Confidence            3344599999888887776666666666543  11111110        112346789999995 556667777888999


Q ss_pred             EecCCCceeEEEecCC----------CCeEEEEccCCcEEEEecCCeEEEE
Q psy6446          90 WDVSASAEVQKLEFGA----------VPNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus        90 ~d~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      +| .+|+.+..+....          ....++|+++|...+++.-+..+++
T Consensus       198 ~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  198 LD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             E--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            99 6778777666432          4679999999988888866665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.51  E-value=0.0084  Score=37.80  Aligned_cols=127  Identities=10%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             eeEeecCCCc-eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC-CCeE-EeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGE-ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA-EPTV-YRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+|++...+ .+..-........ ......++++++|.....+.++.++.... .... .......+.++.+-++++.+
T Consensus       109 l~v~~l~~~~~l~~~~~~~~~~~i-~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~  187 (321)
T PF03178_consen  109 LYVYDLDNSKTLLKKAFYDSPFYI-TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTI  187 (321)
T ss_dssp             EEEEEEETTSSEEEEEEE-BSSSE-EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEE
T ss_pred             EEEEEccCcccchhhheecceEEE-EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEE
Confidence            6788887666 4443333222221 33333467999998888888876554222 2111 12234568888888777799


Q ss_pred             EEeeCCCcEEEEecCC-------Cc----eeEEEecCCCCeEE---EEccC--Cc-------EEEEecCCeEEE
Q psy6446          79 ISCAEDKTVRLWDVSA-------SA----EVQKLEFGAVPNSL---EISRD--GT-------TITVTHGSCVTF  129 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~-------~~----~~~~~~~~~~v~~~---~~~~~--~~-------~l~~~~~~~i~i  129 (134)
                      +.+..+|.+.++....       +.    ....+..+..+.++   ++.|.  +.       .+.++.+|.|..
T Consensus       188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            9999999999987752       22    23334456777777   44451  21       455567787763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.50  E-value=0.013  Score=40.20  Aligned_cols=97  Identities=9%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             eeeEEEccCCcEEEEecCC------------CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEE-
Q psy6446          23 KSSVHFATDSYRLATGSND------------KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRL-   89 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d------------~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-   89 (134)
                      .+...|+|+|..+.+.+..            +.+.+.+++.+.. ..   ...+.|..+.|+|||..++... ++.|.+ 
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va  473 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLA  473 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence            4459999998877766432            2333334433221 11   2356799999999999987655 466666 


Q ss_pred             --EecCCCce-e---EEEe--cCCCCeEEEEccCCcEEEEecC
Q psy6446          90 --WDVSASAE-V---QKLE--FGAVPNSLEISRDGTTITVTHG  124 (134)
Q Consensus        90 --~d~~~~~~-~---~~~~--~~~~v~~~~~~~~~~~l~~~~~  124 (134)
                        -....+.. +   ..+.  ....+..+.|.+++.+++...+
T Consensus       474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~  516 (591)
T PRK13616        474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD  516 (591)
T ss_pred             EEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecC
Confidence              34334431 1   1121  1233578999999987655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=97.46  E-value=0.0026  Score=37.89  Aligned_cols=63  Identities=11%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEE---------------ecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKL---------------EFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +..++.++++...+|.+++||+.+++....-               .....|..+.++.+|.-++.-++|..+.||..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3447889999999999999999987764432               12245677888888876666566778888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.36  E-value=0.012  Score=36.16  Aligned_cols=128  Identities=16%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeE-------------EeCCCCCEeE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-------------YRGHSSGIKH   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-------------~~~~~~~v~~   68 (134)
                      +.+++.........+.....+.. +..-++-+.+++-+ |+.++++++.........             .......+..
T Consensus        18 l~~~~~~~~~~~~~i~~~~~I~q-l~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   95 (275)
T PF00780_consen   18 LYVYDLSDPSKPTRILKLSSITQ-LSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSF   95 (275)
T ss_pred             EEEEEecCCccceeEeecceEEE-EEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeE
Confidence            45566622222222222333445 77778777766654 499999998764322210             1112233444


Q ss_pred             EE--EeeCCCEEEEeeCCCcEEEEecCCC-----ceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          69 VQ--FFKNNTRLISCAEDKTVRLWDVSAS-----AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        69 ~~--~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      .+  -.+.+...+.+...+.|.+|.....     +..+.+..+..+..++|.  +..++.+..+...+.|+.
T Consensus        96 f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~  165 (275)
T PF00780_consen   96 FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLN  165 (275)
T ss_pred             EeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecC
Confidence            44  1124444455555568888887653     456667778889999998  556666655667777765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.36  E-value=0.013  Score=36.60  Aligned_cols=125  Identities=11%  Similarity=0.092  Sum_probs=76.9

Q ss_pred             eeEeecCCCceeeEEe-----eCCCceeeEEEccCCcEEEEecCCC-------eEEEEECCCCCCCCe----EEeCCCCC
Q psy6446           2 GTVWDAVSGEELHSFQ-----HPHIVKSSVHFATDSYRLATGSNDK-------NIRIYDLNKPDAEPT----VYRGHSSG   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~-------~v~i~~~~~~~~~~~----~~~~~~~~   65 (134)
                      +...|..+|+.+.+..     +...+.. ++++++|..++.....|       .+-+++....-....    ....-.+-
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRH-La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRH-LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceee-EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCc
Confidence            4566778888877643     3344555 88998887766654433       233333322110000    01123467


Q ss_pred             EeEEEEeeCCCEEE-EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEE
Q psy6446          66 IKHVQFFKNNTRLI-SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTF  129 (134)
Q Consensus        66 v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i  129 (134)
                      +-++++++++..++ |+-..+.+.+||..+++.+...... .+..++-.+++ +++++..|.+..
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCCccEEE
Confidence            89999999998775 5556778999999999887765432 34566666665 666665565443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.34  E-value=0.015  Score=36.72  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=69.8

Q ss_pred             eeEeecCCC-----ce--eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-EEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSG-----EE--LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~   73 (134)
                      |.++++.+.     +.  +...+..+.+.+ +.-- ++. |+++. .+.+.+|++........ ........+.++..  
T Consensus        64 i~v~~i~~~~~~~~~l~~i~~~~~~g~V~a-i~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--  137 (321)
T PF03178_consen   64 ILVFEISESPENNFKLKLIHSTEVKGPVTA-ICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--  137 (321)
T ss_dssp             EEEEEECSS-----EEEEEEEEEESS-EEE-EEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--
T ss_pred             EEEEEEEcccccceEEEEEEEEeecCcceE-hhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--
Confidence            567777763     22  223335555544 4433 444 54443 37899999987652221 11122234445444  


Q ss_pred             CCCEEEEeeCCCcEEEEecCC-CceeEEEe---cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSA-SAEVQKLE---FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+++++.+.....+.++..+. .+.+..+.   ....+.++.+-+++..++++ .+|.+.++..
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            477999999888888876554 22233332   23446778887666555555 6799988764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444|consensus

Probab=97.33  E-value=0.0062  Score=36.18  Aligned_cols=102  Identities=13%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             CcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-C-CCCe
Q psy6446          32 SYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-G-AVPN  108 (134)
Q Consensus        32 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~-~~v~  108 (134)
                      +..+++|+.+|.|.+|..+........+. +.....+.+.--.++.+..++..++.|+.|++...+.+....+ . .+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            46788999999999998874222211111 1111222222223455778999999999999987776655442 2 3344


Q ss_pred             EEEEccCCcEEEEe---cCCeEEEEeCC
Q psy6446         109 SLEISRDGTTITVT---HGSCVTFLDAN  133 (134)
Q Consensus       109 ~~~~~~~~~~l~~~---~~~~i~i~d~~  133 (134)
                      ....+..++++.++   .+..++.|+++
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444445555543   45667777664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.31  E-value=0.014  Score=35.73  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             eeeEEeeCCCce-eeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEE
Q psy6446          12 ELHSFQHPHIVK-SSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVR   88 (134)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   88 (134)
                      .+..+.|....+ ..+.|..++.++-+.+.-|  .++.+|+.+++..........----.++.. +++.....=.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence            455666655544 4477767888877777766  688899988653322211111112233333 223333445678899


Q ss_pred             EEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          89 LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        89 ~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +||..+.+.+..+....+-..++  .++..+..+ ++.+|+.+|.++
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence            99999999999998888888888  445555544 678999998753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079|consensus

Probab=97.26  E-value=0.0038  Score=44.69  Aligned_cols=67  Identities=21%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE---eeCCCEEEEeeCCCc
Q psy6446          19 PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF---FKNNTRLISCAEDKT   86 (134)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~   86 (134)
                      ....+++++|+.+|..++.|-.+|.|.+||+..++. .+.+..|..+...+-+   ..++..++++...|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            344556699999999999999999999999998554 4566666655544443   335556777777775

>KOG2395|consensus

Probab=97.20  E-value=0.0055  Score=40.79  Aligned_cols=67  Identities=24%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      ++|.+-. ...++++|+.+|.|++||- .+......+.+-..+|..+..+.+|++++..+ +..+.+.++
T Consensus       433 Fsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            4434443 3458999999999999997 44555556788889999999999999987544 345666554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.11  E-value=0.002  Score=41.17  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=38.1

Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +...++|+.+++..........+....|+|+|+.++...++.|.+.+..
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~   71 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA   71 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECC
Confidence            4688999988765544434567899999999999999989999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.08  E-value=0.037  Score=36.32  Aligned_cols=46  Identities=24%  Similarity=0.415  Sum_probs=34.6

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECC
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN   50 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~   50 (134)
                      |+||+. +|+.+..+. ..+.++. +.|+.+. .|++-..||.+++||+.
T Consensus        63 I~iys~-sG~ll~~i~w~~~~iv~-~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   63 IQIYSS-SGKLLSSIPWDSGRIVG-MGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEECC-CCCEeEEEEECCCCEEE-EEECCCC-eEEEEEcCCEEEEEeCC
Confidence            788885 588888877 3355566 9998765 55566689999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=97.02  E-value=0.017  Score=34.50  Aligned_cols=69  Identities=10%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             EccCCcEEEEecCCCeEEEEECCCCCCCCeE------Ee-------CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTV------YR-------GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        28 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      +..+++++++-+.+|.+++||+.+.+.....      +.       .....|..+.++.+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3446888999999999999999986533221      11       3456788888888888777655 46778887654


Q ss_pred             Cce
Q psy6446          95 SAE   97 (134)
Q Consensus        95 ~~~   97 (134)
                      +.-
T Consensus        97 ~~W   99 (219)
T PF07569_consen   97 GCW   99 (219)
T ss_pred             cee
Confidence            433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.98  E-value=0.047  Score=35.85  Aligned_cols=87  Identities=9%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-C-----------------CCE
Q psy6446          16 FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-N-----------------NTR   77 (134)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----------------~~~   77 (134)
                      +........++..+|++++.++...-|.|.++|+..+. ..++.++.+..-...-..+ .                 ..+
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            33344445559999999999998888999999998855 4456676654322211111 1                 112


Q ss_pred             E-EEeeCCCcEEEEecCCCceeEEEec
Q psy6446          78 L-ISCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        78 l-~~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      | +-.-..|.|.+|+++++..+..+..
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            2 2345678899999999988876653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.98  E-value=0.046  Score=35.75  Aligned_cols=132  Identities=15%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC-----------CeEEEEECCCCCCC-CeEEeCCCCC--E
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND-----------KNIRIYDLNKPDAE-PTVYRGHSSG--I   66 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------~~v~i~~~~~~~~~-~~~~~~~~~~--v   66 (134)
                      +++++|+.+|+.+...-......+ +.|.++++.|+....+           ..|+.|.+.+.... ...+.+....  .
T Consensus       151 ~l~v~Dl~tg~~l~d~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~  229 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF  229 (414)
T ss_dssp             EEEEEETTTTEEEEEEEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred             EEEEEECCCCcCcCCcccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence            378999999987653211112223 9999998877655432           24788888775433 2234443333  5


Q ss_pred             eEEEEeeCCCEEEEeeC---C-CcEEEEecCCC-----ceeEEEecCCCCeEEEEccCCcEEEEe-c---CCeEEEEeCC
Q psy6446          67 KHVQFFKNNTRLISCAE---D-KTVRLWDVSAS-----AEVQKLEFGAVPNSLEISRDGTTITVT-H---GSCVTFLDAN  133 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~~~i~i~d~~  133 (134)
                      ..+..++++++++....   + ..+.+.|+..+     ...........+....-+..+.+++.+ .   .+.|...++.
T Consensus       230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETT
T ss_pred             EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccc
Confidence            67888999999774332   2 35788888764     233333333333333323344444433 2   2566555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.96  E-value=0.042  Score=34.96  Aligned_cols=49  Identities=16%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             cEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEE-Ee-cCCeEEEEeCCC
Q psy6446          86 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TIT-VT-HGSCVTFLDANS  134 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~-~~~~i~i~d~~t  134 (134)
                      .|.++|+.+++.+..+..+.++.++..+.+.+ +|+ .. .++.+.+||..|
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            47788999999999998878888999998874 554 34 468999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.95  E-value=0.035  Score=33.87  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             CCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-
Q psy6446          20 HIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-   96 (134)
Q Consensus        20 ~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-   96 (134)
                      ..-++.++|+|+. .++++....+.|..++.+ ++.. +...- --+..-.+++..++.++++.-+++.+.++++.... 
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            3346679999964 566777778888888865 3433 33322 23568889998788777776678889999884321 


Q ss_pred             -----eeEEEe------cCCCCeEEEEccCCcEEEEe-cCCeEEEE
Q psy6446          97 -----EVQKLE------FGAVPNSLEISRDGTTITVT-HGSCVTFL  130 (134)
Q Consensus        97 -----~~~~~~------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~  130 (134)
                           ....+.      ....+..++|+|.+..+++. ...-..+|
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY  144 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence                 112222      12447899999987555544 43333344

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.91  E-value=0.04  Score=38.77  Aligned_cols=69  Identities=4%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCC----------Cce--e-EEEe---------cCCCCeEEEEccCC---c-
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSA----------SAE--V-QKLE---------FGAVPNSLEISRDG---T-  117 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----------~~~--~-~~~~---------~~~~v~~~~~~~~~---~-  117 (134)
                      -.|..+.++|+|..++..|..+. .|..+..          ++.  . +...         ....|..+.|+|.+   . 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            36889999999999998888664 3333321          111  1 1111         12467899999964   4 


Q ss_pred             EEEEecCCeEEEEeCC
Q psy6446         118 TITVTHGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~~~~~i~i~d~~  133 (134)
                      +++..+|+.+++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            4556899999999984

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.89  E-value=0.064  Score=36.12  Aligned_cols=127  Identities=14%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCc-------EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe---
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSY-------RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF---   72 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~---   72 (134)
                      +-.|++.|+.+.....+..+ - +.|.|+.+       .-++|-.+..|.-.|.+-....... .....-++.-.|+   
T Consensus       493 ykmDIErGkvveeW~~~ddv-v-Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fss~~  569 (776)
T COG5167         493 YKMDIERGKVVEEWDLKDDV-V-VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFSSGM  569 (776)
T ss_pred             eeeecccceeeeEeecCCcc-e-eecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhccccccccccc
Confidence            34566777777777644444 2 66776432       2344555555665666543321111 1111222222232   


Q ss_pred             -eCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          73 -KNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        73 -~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                       -...+++.+++.|.|++||--.-+....++ .+..|..+....+|.+++++....+.+-|+
T Consensus       570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~  631 (776)
T COG5167         570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV  631 (776)
T ss_pred             cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence             245689999999999999965444333343 467888999999999988876666666665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.88  E-value=0.0081  Score=25.93  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             CCEeEEEEeeCC---CEEEEeeCCCcEEEEecCC
Q psy6446          64 SGIKHVQFFKNN---TRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        64 ~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~   94 (134)
                      +.+.+++|+|+.   ..|+..-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999844   4777777778999999985

It contains a characteristic DLL sequence motif.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.85  E-value=0.037  Score=32.78  Aligned_cols=100  Identities=12%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             cEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC------cEEEE---ecC--CCce---
Q psy6446          33 YRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK------TVRLW---DVS--ASAE---   97 (134)
Q Consensus        33 ~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~---d~~--~~~~---   97 (134)
                      ..|+.+...+.|.+|++.... .+...+. --+.|..+.++..|++++|--.+.      .+++|   ...  ...+   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            445444556789999998433 3333333 347899999999999999854332      45555   111  0111   


Q ss_pred             --------------------eEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          98 --------------------VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        98 --------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                                          +-.++...++.+++-.|..--|+.+.++.+.+|.++
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~  163 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLK  163 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence                                111223456778888886656666667888888653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.85  E-value=0.071  Score=35.87  Aligned_cols=127  Identities=10%  Similarity=0.010  Sum_probs=71.2

Q ss_pred             eeEeecCCCceeeEEeeCCC------ceeeEEEc----cCCc---EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeE
Q psy6446           2 GTVWDAVSGEELHSFQHPHI------VKSSVHFA----TDSY---RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~------~~~~~~~~----~~~~---~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~   68 (134)
                      |.-.|..+|+.+..++....      ........    -++.   .++.++.+|.+...|.++++..-.....    ...
T Consensus       258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~  333 (488)
T cd00216         258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQP  333 (488)
T ss_pred             EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccc
Confidence            56678899999988762211      11101111    1333   5778889999999999998754332111    011


Q ss_pred             EEEeeCCCEEEE------------------eeCCCcEEEEecCCCceeEEEecC---------CCCeEEEEccCCcEEEE
Q psy6446          69 VQFFKNNTRLIS------------------CAEDKTVRLWDVSASAEVQKLEFG---------AVPNSLEISRDGTTITV  121 (134)
Q Consensus        69 ~~~~~~~~~l~~------------------~~~d~~i~~~d~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~  121 (134)
                      +...|  ..++.                  ...++.+.-.|..+++.+......         .+...-.....+..+++
T Consensus       334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~  411 (488)
T cd00216         334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA  411 (488)
T ss_pred             cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence            22232  22222                  124577888899999888776643         11111111123344554


Q ss_pred             -ecCCeEEEEeCCC
Q psy6446         122 -THGSCVTFLDANS  134 (134)
Q Consensus       122 -~~~~~i~i~d~~t  134 (134)
                       +.+|.|+.+|.+|
T Consensus       412 g~~dG~l~ald~~t  425 (488)
T cd00216         412 GAADGYFRAFDATT  425 (488)
T ss_pred             ECCCCeEEEEECCC
Confidence             4689999888754

The alignment model contains an 8-bladed beta-propeller.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.81  E-value=0.047  Score=33.39  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             eeeEEEccCCcEEEEec---CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEe-cCCCcee
Q psy6446          23 KSSVHFATDSYRLATGS---NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD-VSASAEV   98 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~   98 (134)
                      ....+++++++.++...   ....++++...  .......  ....+....|.+++........+...+++. ...+...
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            34499999999877655   33345555443  3232222  234788889999976666656565566663 2333222


Q ss_pred             -EEEec---CCCCeEEEEccCCcEEEEe----cCCeEEEE
Q psy6446          99 -QKLEF---GAVPNSLEISRDGTTITVT----HGSCVTFL  130 (134)
Q Consensus        99 -~~~~~---~~~v~~~~~~~~~~~l~~~----~~~~i~i~  130 (134)
                       .....   ...|..+.++|||..++.-    .+++|.+-
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va  141 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA  141 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence             12221   1279999999999876642    24666653

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.80  E-value=0.053  Score=33.75  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeE-EeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV-YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      .-++++.|+|+.+.|++..+...-.++--.++..+..+ +.+ -...-.+.+..++++.++--.++.+.++.+.......
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            33667999999998888877666555544444433222 112 2334567777788888877778888888766543221


Q ss_pred             -----EEec------CCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446         100 -----KLEF------GAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus       100 -----~~~~------~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                           .++.      ......++|+|..+.+... .-.-+.||.
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~  208 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE  208 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence                 1221      2345789999988766655 334444443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.74  E-value=0.033  Score=30.48  Aligned_cols=105  Identities=12%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCC-------CCeEEeCCCCCEeEEEEee----C-CCEEEEeeCCCcEEEEecC
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDA-------EPTVYRGHSSGIKHVQFFK----N-NTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-------~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~d~~i~~~d~~   93 (134)
                      -.|......|++++.-|+|.+++......       .... ..-...|++++-.+    + ...|+.| ....+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence            45666666788888889999998764321       1122 23445677776544    2 3344444 45579999998


Q ss_pred             CCceeEEEecCCCCeEEEEcc----CCcEEEEecCCeEEEEeC
Q psy6446          94 ASAEVQKLEFGAVPNSLEISR----DGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        94 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~i~i~d~  132 (134)
                      ....+.....+..++++.+-.    +.+++++|++..|.-||.
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            877666555566677776632    345666665555555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.72  E-value=0.063  Score=33.44  Aligned_cols=113  Identities=16%  Similarity=0.246  Sum_probs=68.6

Q ss_pred             CCceeeEEeeCCCceeeEEEccCC-cEEEEecCCCe-EEEEECCCCCCCCeEEeCCCC--CEeEEEEeeCCCEEEEeeCC
Q psy6446           9 SGEELHSFQHPHIVKSSVHFATDS-YRLATGSNDKN-IRIYDLNKPDAEPTVYRGHSS--GIKHVQFFKNNTRLISCAED   84 (134)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~-v~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d   84 (134)
                      .|+++....-+...-. +.++|.. .-++.+-.-|+ ..++|.+....+. .....++  -.-.-.|||||.+|...-+|
T Consensus        57 aGk~v~~~~lpaR~Hg-i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-~~~s~~~RHfyGHGvfs~dG~~LYATEnd  134 (366)
T COG3490          57 AGKIVFATALPARGHG-IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-TLVSQEGRHFYGHGVFSPDGRLLYATEND  134 (366)
T ss_pred             CCceeeeeecccccCC-eecCCCCcceEEEEecCCceEEEECCCCCcCcE-EEecccCceeecccccCCCCcEEEeecCC
Confidence            3556555554444444 7788843 44555555554 4678887765543 2222221  22334689999999865443


Q ss_pred             -----CcEEEEecCCC-ceeEEEe-cCCCCeEEEEccCCcEEEEec
Q psy6446          85 -----KTVRLWDVSAS-AEVQKLE-FGAVPNSLEISRDGTTITVTH  123 (134)
Q Consensus        85 -----~~i~~~d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  123 (134)
                           |.|-+||.+.+ +.+..+. +.-....+.+.+||+.++...
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence                 67999998743 2233333 345567899999999888753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.68  E-value=0.07  Score=33.57  Aligned_cols=107  Identities=12%  Similarity=0.065  Sum_probs=57.1

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC-CceeE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA-SAEVQ   99 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~   99 (134)
                      ..+..+.-+++|+++++++.-....-|+.....- ....+.....+..|.|.|++...+. .+.|.++.-+... .....
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE-
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccccc
Confidence            3444477788999888887655555677543211 1122334678999999999776554 4778888777222 22111


Q ss_pred             E--Ee---cCCCCeEEEEccCCcEEEEecCCeEEE
Q psy6446         100 K--LE---FGAVPNSLEISRDGTTITVTHGSCVTF  129 (134)
Q Consensus       100 ~--~~---~~~~v~~~~~~~~~~~l~~~~~~~i~i  129 (134)
                      .  .+   ....+..++|.+++...+++.+|.+..
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence            1  11   122367889999988888887776543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.63  E-value=0.11  Score=35.53  Aligned_cols=109  Identities=11%  Similarity=0.079  Sum_probs=66.3

Q ss_pred             eeEEEccC----CcEEEEecCCCeEEEEECCCCC----CCCeEEeC-C----CCCEeEEEEeeCCCEEEEeeCCCcEEEE
Q psy6446          24 SSVHFATD----SYRLATGSNDKNIRIYDLNKPD----AEPTVYRG-H----SSGIKHVQFFKNNTRLISCAEDKTVRLW   90 (134)
Q Consensus        24 ~~~~~~~~----~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~   90 (134)
                      ..+.|.|-    ...+++......|.+|.+....    +....... .    .--....-|+|....|+.-..+..-.++
T Consensus        60 ~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~  139 (671)
T PF15390_consen   60 HGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLP  139 (671)
T ss_pred             eeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEee
Confidence            34888884    3345555667889999986321    11111111 1    1123567799988887665554444455


Q ss_pred             ecC--CCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          91 DVS--ASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        91 d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      +.+  +.+....+...+.|.|.+|.+||+.++++  +.=.-++||-
T Consensus       140 sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  140 SVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            554  33444556677889999999999887765  3346677773

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.081  Score=33.41  Aligned_cols=70  Identities=20%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             CCEeEEEEeeCCCEEEEeeC------C---CcEEEEecC-CCceeEEEec-CCCCeEEEEccCCcEEEEe--cCCeEEEE
Q psy6446          64 SGIKHVQFFKNNTRLISCAE------D---KTVRLWDVS-ASAEVQKLEF-GAVPNSLEISRDGTTITVT--HGSCVTFL  130 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~------d---~~i~~~d~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~  130 (134)
                      ...+.....|+|.+.++-..      .   ..-.+|-+. .+...+.... -...+.++||||++.+..+  ..+.|+.|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            34567888888887764333      1   112344444 3444444433 3455899999999877765  34888888


Q ss_pred             eCC
Q psy6446         131 DAN  133 (134)
Q Consensus       131 d~~  133 (134)
                      ++.
T Consensus       191 ~~d  193 (307)
T COG3386         191 DLD  193 (307)
T ss_pred             ecC
Confidence            763

>KOG4460|consensus

Probab=96.60  E-value=0.11  Score=35.07  Aligned_cols=69  Identities=3%  Similarity=-0.032  Sum_probs=45.8

Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEe---------cCCCceeEEEe------------cCCCCeEEEEccCC----cEE
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWD---------VSASAEVQKLE------------FGAVPNSLEISRDG----TTI  119 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d---------~~~~~~~~~~~------------~~~~v~~~~~~~~~----~~l  119 (134)
                      .|..+..++.|..++..+.+|.+.++=         +.+++..-...            ..-.+..++|+|+.    .++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            467788889999999888888655442         12333222111            11235678899976    455


Q ss_pred             EEecCCeEEEEeCC
Q psy6446         120 TVTHGSCVTFLDAN  133 (134)
Q Consensus       120 ~~~~~~~i~i~d~~  133 (134)
                      +..+|+.|++||..
T Consensus       185 iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLS  198 (741)
T ss_pred             EEecCcEEEEEecC
Confidence            56899999999974

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.49  E-value=0.046  Score=37.20  Aligned_cols=71  Identities=14%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             CCcEEEEecCCCeEEEEECCC---CCCCCe--EEe--------------------CCCCCEeEEEEee----CCCEEEEe
Q psy6446          31 DSYRLATGSNDKNIRIYDLNK---PDAEPT--VYR--------------------GHSSGIKHVQFFK----NNTRLISC   81 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~---~~~~~~--~~~--------------------~~~~~v~~~~~~~----~~~~l~~~   81 (134)
                      +...++.+..||.+.......   ......  .+.                    .....+...+++.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666777778888777776554   110000  000                    0123455566665    77899999


Q ss_pred             eCCCcEEEEecCCCceeEEE
Q psy6446          82 AEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~  101 (134)
                      +.|+.+++||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999996554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.48  E-value=0.15  Score=34.81  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=36.6

Q ss_pred             eeEeecCCCceeeEEee--C--------CCceeeEEEccCCc---EEEEecCCCeEEEEECCCCCC
Q psy6446           2 GTVWDAVSGEELHSFQH--P--------HIVKSSVHFATDSY---RLATGSNDKNIRIYDLNKPDA   54 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~---~l~~~~~d~~v~i~~~~~~~~   54 (134)
                      |.-.|++||+....++.  +        ...+- +....+|+   .++.+.++|.+++.|..+++.
T Consensus       273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l-~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL-FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEEccccCCEEEeeeCCCCCCccccCCCCcEE-EEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            55678899999988872  1        11122 33334665   678899999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.39  E-value=0.13  Score=35.73  Aligned_cols=89  Identities=13%  Similarity=0.214  Sum_probs=57.1

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEc--cCCcEEEEecCCCeEEEEECC-----CCCC---CCeE--EeCCC-CC
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFA--TDSYRLATGSNDKNIRIYDLN-----KPDA---EPTV--YRGHS-SG   65 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~l~~~~~d~~v~i~~~~-----~~~~---~~~~--~~~~~-~~   65 (134)
                      ++.|||...+.....-.  ..+.+.. +.|.  |+++.+++.+..+.|.++.-.     ...+   ....  ...+. .+
T Consensus        52 ~LtIWD~~~~~lE~~~~f~~~~~I~d-LDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~  130 (631)
T PF12234_consen   52 ELTIWDTRSGVLEYEESFSEDDPIRD-LDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP  130 (631)
T ss_pred             EEEEEEcCCcEEEEeeeecCCCceee-ceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence            36899998887544333  3445544 8875  588888888888888887542     1111   1111  22333 67


Q ss_pred             EeEEEEeeCCCEEEEeeCCCcEEEEec
Q psy6446          66 IKHVQFFKNNTRLISCAEDKTVRLWDV   92 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~~d~   92 (134)
                      |.+..|.++|..++.++  +.+.++|-
T Consensus       131 Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  131 IGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             ccceeEecCCeEEEEeC--CEEEEECC
Confidence            89999999988776554  45777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.38  E-value=0.022  Score=24.11  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             eCCCEEEEee-CCCcEEEEecCCCceeEEEecCCCCeEEEEc
Q psy6446          73 KNNTRLISCA-EDKTVRLWDVSASAEVQKLEFGAVPNSLEIS  113 (134)
Q Consensus        73 ~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~  113 (134)
                      |++++|+.+. .++.|.++|..+++....+........+.|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            4677666544 5788999999988888887766555666553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.24  E-value=0.2  Score=33.81  Aligned_cols=82  Identities=11%  Similarity=0.036  Sum_probs=49.0

Q ss_pred             CCCeEEEEECCCCCCCCeEEeC-CC------CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeE--E
Q psy6446          40 NDKNIRIYDLNKPDAEPTVYRG-HS------SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNS--L  110 (134)
Q Consensus        40 ~d~~v~i~~~~~~~~~~~~~~~-~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~--~  110 (134)
                      .+|.+.-.|+.+++..-..-.. +.      .....-.....+..++.++.||.+..+|..+|+.+........+..  +
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~  443 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPM  443 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCE
Confidence            3567777888776643322111 00      1111111122567888889999999999999999988876555422  3


Q ss_pred             EEccCCcEEEE
Q psy6446         111 EISRDGTTITV  121 (134)
Q Consensus       111 ~~~~~~~~l~~  121 (134)
                      .+..+++..+.
T Consensus       444 ~~~~~g~~yv~  454 (488)
T cd00216         444 TYEVNGKQYVG  454 (488)
T ss_pred             EEEeCCEEEEE
Confidence            34456654443

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=96.24  E-value=0.14  Score=35.21  Aligned_cols=60  Identities=8%  Similarity=0.074  Sum_probs=31.6

Q ss_pred             CCCEEEEeeCC------CcEEEEecCC-Ccee--EEEecCCCCeEEEEccCCcEEEEe-cCC--eEEEEeCCC
Q psy6446          74 NNTRLISCAED------KTVRLWDVSA-SAEV--QKLEFGAVPNSLEISRDGTTITVT-HGS--CVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d------~~i~~~d~~~-~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~~--~i~i~d~~t  134 (134)
                      +++..+.|+.+      ..+..||..+ .+..  ..++......+++.. +++..++| .++  .+..||+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCccc
Confidence            56666666653      2367888886 4433  223222222233332 55655554 455  677787754

>KOG1916|consensus

Probab=96.08  E-value=0.012  Score=41.80  Aligned_cols=66  Identities=17%  Similarity=0.371  Sum_probs=45.7

Q ss_pred             EEEcc---CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE-----------EeeCCCEEEEeeCCCcEEEEe
Q psy6446          26 VHFAT---DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ-----------FFKNNTRLISCAEDKTVRLWD   91 (134)
Q Consensus        26 ~~~~~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~i~~~d   91 (134)
                      +.|.|   +.-++..+-.++.+++...+....  ..+.+|...+..++           .+|||..++....||.++.|.
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            55554   566777888888999877665332  34555665554443           578999999999999888776


Q ss_pred             cC
Q psy6446          92 VS   93 (134)
Q Consensus        92 ~~   93 (134)
                      +.
T Consensus       264 iy  265 (1283)
T KOG1916|consen  264 IY  265 (1283)
T ss_pred             ee
Confidence            53

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.02  E-value=0.31  Score=34.61  Aligned_cols=74  Identities=19%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCC---------CCCCC--eEE--------eCCCCCEeEEEEeeC---CCEEEE
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNK---------PDAEP--TVY--------RGHSSGIKHVQFFKN---NTRLIS   80 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~---------~~~~~--~~~--------~~~~~~v~~~~~~~~---~~~l~~   80 (134)
                      +..+..+|+|.+++..+..|...+.=.+.         ++...  +..        ......|..+.|+|.   +..|+.
T Consensus        87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v  166 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV  166 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence            34488899999999888866443332221         11100  010        133457899999995   588999


Q ss_pred             eeCCCcEEEEecCCCc
Q psy6446          81 CAEDKTVRLWDVSASA   96 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~   96 (134)
                      -..|+.+++||+....
T Consensus       167 Ltsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  167 LTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EecCCEEEEEecCCCC
Confidence            9999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.95  E-value=0.14  Score=34.95  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT   57 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~   57 (134)
                      |.-+|+.+|+.+...+......... ..-.+..++.++.+|.++.+|.++++.+..
T Consensus       443 l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~  497 (527)
T TIGR03075       443 LIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWK  497 (527)
T ss_pred             EEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence            5678999999998887444333212 112456778888899999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.92  E-value=0.25  Score=32.19  Aligned_cols=113  Identities=16%  Similarity=0.125  Sum_probs=55.6

Q ss_pred             eecCCCceeeEEeeCCC------ceeeEEEccCCcEEEEec-CCC--eEEEEECCCCCCCCeEEeCCC-CCEeEEEEeeC
Q psy6446           5 WDAVSGEELHSFQHPHI------VKSSVHFATDSYRLATGS-NDK--NIRIYDLNKPDAEPTVYRGHS-SGIKHVQFFKN   74 (134)
Q Consensus         5 ~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-~d~--~v~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~   74 (134)
                      -|..||..+..+.....      ... =+|.++|+.|+.++ .+|  ++++.|+.+++..  -+.... .......++|+
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~-~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~--QLTdg~g~~~~g~~~s~~   91 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQ-NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT--QLTDGPGDNTFGGFLSPD   91 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS---B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE--E---SS-B-TTT-EE-TT
T ss_pred             eCCCCCceEEEecCCCCcccceeecC-CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE--ECccCCCCCccceEEecC
Confidence            35677877777753322      223 55677887665544 444  6777777775432  233322 22345667888


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecCCC-CeEEEEc--cCCcEEE
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-PNSLEIS--RDGTTIT  120 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-v~~~~~~--~~~~~l~  120 (134)
                      ++.++-......+.-.|+.+.+....+..+.. .....|.  .++..++
T Consensus        92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen   92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred             CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEE
Confidence            88887766667899999998876555554332 2234443  3455554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.88  E-value=0.41  Score=34.32  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=65.0

Q ss_pred             eeeEEEcc-CCcEEEEecCCCeEEEEECCCCC----CCCeEEeCCCC----------CEeEEEEeeCCCEEEEeeCCCcE
Q psy6446          23 KSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD----AEPTVYRGHSS----------GIKHVQFFKNNTRLISCAEDKTV   87 (134)
Q Consensus        23 ~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~d~~i   87 (134)
                      ..-++|+| +.+.||+....|...||++....    ........+.+          .-..+.|.++...|+.++.. .+
T Consensus       148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l  226 (765)
T PF10214_consen  148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KL  226 (765)
T ss_pred             cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ce
Confidence            33499999 66789999999999999992111    11111111222          23467788777777776654 57


Q ss_pred             EEEecCCCceeEEE---ecCCCCeEEEEccCC--cEEEEecCCeEEEEeC
Q psy6446          88 RLWDVSASAEVQKL---EFGAVPNSLEISRDG--TTITVTHGSCVTFLDA  132 (134)
Q Consensus        88 ~~~d~~~~~~~~~~---~~~~~v~~~~~~~~~--~~l~~~~~~~i~i~d~  132 (134)
                      .++|+.+......+   .....|..++-+|..  ..++.+ ...|...|+
T Consensus       227 ~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~  275 (765)
T PF10214_consen  227 MLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDV  275 (765)
T ss_pred             EEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEc
Confidence            88998876553312   234567777777762  333322 245555444

These proteins are found in fungi.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.19  Score=31.41  Aligned_cols=72  Identities=7%  Similarity=0.203  Sum_probs=53.8

Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      +-...+.++.|+|+.+.|++......-.++=...|+.++.++..  .....+.+..+++++++. .++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            44456999999999999998888887777766788999888753  344677777777777765 4566666543

>KOG4499|consensus

Probab=95.84  E-value=0.2  Score=30.44  Aligned_cols=98  Identities=11%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             eCCCceeeEEEccCCcEEE-EecCCCeEEEEEC--CCCCCCC--eEE--eC----CCCCEeEEEEeeCCCEEEEeeCCCc
Q psy6446          18 HPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDL--NKPDAEP--TVY--RG----HSSGIKHVQFFKNNTRLISCAEDKT   86 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~--~~~~~~~--~~~--~~----~~~~v~~~~~~~~~~~l~~~~~d~~   86 (134)
                      ..-.+.+.++|+.+.+.+. +-+.+-.|.-||.  .++....  ..+  +.    .....-.++...+|...++.-..++
T Consensus       155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence            3344555688988776664 4566777877774  3432111  111  11    1122345556667888888888999


Q ss_pred             EEEEecCCCceeEEEecC-CCCeEEEEccC
Q psy6446          87 VRLWDVSASAEVQKLEFG-AVPNSLEISRD  115 (134)
Q Consensus        87 i~~~d~~~~~~~~~~~~~-~~v~~~~~~~~  115 (134)
                      |...|..+|+.+..+..+ ..+++++|--.
T Consensus       235 V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  235 VQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            999999999999988864 56889998643

>PRK10115 protease 2; Provisional

Probab=95.82  E-value=0.41  Score=33.87  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             eeeEEEccCCcEEEEecC-----CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC------CcEEEEe
Q psy6446          23 KSSVHFATDSYRLATGSN-----DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED------KTVRLWD   91 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d   91 (134)
                      +..+.++|++++|+.+..     ...+++.|+.++......+.+-   -..++|.+|++.++....+      ..+..++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            445789999998876533     2368889998765333322221   1569999999877654332      3577788


Q ss_pred             cCCC--ceeEEEecCCC-Ce-EEEEccCCcEEEEe----cCCeEEEEeC
Q psy6446          92 VSAS--AEVQKLEFGAV-PN-SLEISRDGTTITVT----HGSCVTFLDA  132 (134)
Q Consensus        92 ~~~~--~~~~~~~~~~~-v~-~~~~~~~~~~l~~~----~~~~i~i~d~  132 (134)
                      +.++  +....+..... .. ....+.++++++..    .++.+.+|+.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8877  33333332222 22 23334477766542    2467888874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.78  E-value=0.3  Score=31.89  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecC---CC-eEEEEECCCCCCCCeEEeCC--CCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSN---DK-NIRIYDLNKPDAEPTVYRGH--SSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~---d~-~v~i~~~~~~~~~~~~~~~~--~~~v~~~~~~~~   74 (134)
                      |.--|+.+|+....++.....-. +.|+| +...|..+..   +. .-+||-+++.......+..+  ...+..=-|.||
T Consensus       170 i~~idl~tG~~~~v~~~~~wlgH-~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D  248 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFEDTDWLGH-VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD  248 (386)
T ss_dssp             EEEEETTT--EEEEEEESS-EEE-EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred             EEEEECCCCceeEEEecCccccC-cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence            44567888887666665554455 99999 4555555432   22 23667666543222222222  223555668899


Q ss_pred             CCEEEEee-----CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE
Q psy6446          75 NTRLISCA-----EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV  121 (134)
Q Consensus        75 ~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  121 (134)
                      |..+.--+     .+..|.-+|+.+++.......+ ....+--++||.+++.
T Consensus       249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             SS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEE
T ss_pred             CCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEe
Confidence            98776422     2445777888887665433333 3334555788888876

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.78  E-value=0.26  Score=32.99  Aligned_cols=102  Identities=8%  Similarity=0.082  Sum_probs=64.7

Q ss_pred             CcEEEEecCCCeEEEE-ECCCCCCCCe----EEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCC
Q psy6446          32 SYRLATGSNDKNIRIY-DLNKPDAEPT----VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV  106 (134)
Q Consensus        32 ~~~l~~~~~d~~v~i~-~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  106 (134)
                      |..+.+++.||.|.-| |.+.+..+..    .++-...++..+.-..+.+-+++-+.+|++.++-....+.+.....-..
T Consensus       280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~  359 (733)
T COG4590         280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA  359 (733)
T ss_pred             ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC
Confidence            5568888999988766 4444332211    1111122333333233445677778888888886555554443333456


Q ss_pred             CeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446         107 PNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus       107 v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.-++++|.+.+++.-..|.++++.++
T Consensus       360 ~~~~~~Sp~~~~Ll~e~~gki~~~~l~  386 (733)
T COG4590         360 PQLVAMSPNQAYLLSEDQGKIRLAQLE  386 (733)
T ss_pred             cceeeeCcccchheeecCCceEEEEec
Confidence            778999999999998888999998765

>KOG2247|consensus

Probab=95.76  E-value=0.00067  Score=44.48  Aligned_cols=111  Identities=11%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEE-ecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEE
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLAT-GSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVR   88 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   88 (134)
                      ++.......+...+. ++|..++..++. +-..+.+.+||+.+.......+ +-...-.-+.|++....++.+...+.+.
T Consensus        65 gq~~le~n~tg~ald-m~wDkegdvlavlAek~~piylwd~n~eytqqLE~-gg~~s~sll~wsKg~~el~ig~~~gn~v  142 (615)
T KOG2247|consen   65 GQVILELNPTGKALD-MAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES-GGTSSKSLLAWSKGTPELVIGNNAGNIV  142 (615)
T ss_pred             cceecccCCchhHhh-hhhccccchhhhhhhcCCCeeechhhhhhHHHHhc-cCcchHHHHhhccCCccccccccccceE
Confidence            344444444555566 888887776654 5567899999998643211111 1122223377888888888888888999


Q ss_pred             EEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe
Q psy6446          89 LWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        89 ~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  122 (134)
                      +++..+.+..-.+. +...+.++++.+.+..+..+
T Consensus       143 iynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  143 IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             EEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            99988766655555 55677888888877666544

>KOG3630|consensus

Probab=95.73  E-value=0.042  Score=40.20  Aligned_cols=96  Identities=10%  Similarity=0.014  Sum_probs=65.1

Q ss_pred             eeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          24 SSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        24 ~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .++.|+|.- ...++...|+.|++..+.........+ .-....++++|+|.|+.++.|...|++.-|... .+....++
T Consensus       159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip  236 (1405)
T KOG3630|consen  159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP  236 (1405)
T ss_pred             ccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence            347888843 234566778888887765433222221 234568999999999999999999999888543 33333333


Q ss_pred             -----cCCCCeEEEEccCCcEEEE
Q psy6446         103 -----FGAVPNSLEISRDGTTITV  121 (134)
Q Consensus       103 -----~~~~v~~~~~~~~~~~l~~  121 (134)
                           ....|.+++|.....+++.
T Consensus       237 ~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  237 EPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CCCcCCCcceeEEEEecceeEEEE
Confidence                 1367889999887777664

>KOG2377|consensus

Probab=95.66  E-value=0.38  Score=32.23  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCC--CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKP--DAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-  102 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-  102 (134)
                      +.|. |.+..+.+...|.+.=|-....  ..+...-....++|.++.|++|.+.++....+.+|.+++....+...... 
T Consensus        28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            4444 3333333333444555554332  23334444567899999999999999999999999999875443332222 


Q ss_pred             -c--C-CCCeEEEEccC
Q psy6446         103 -F--G-AVPNSLEISRD  115 (134)
Q Consensus       103 -~--~-~~v~~~~~~~~  115 (134)
                       +  + ..|.+..|..+
T Consensus       107 ~ck~k~~~IlGF~W~~s  123 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSS  123 (657)
T ss_pred             HhccCcceeEEEEEecC
Confidence             1  2 23677777755

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.55  E-value=0.4  Score=31.72  Aligned_cols=54  Identities=7%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC--CCCeEEEEccCC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDG  116 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~  116 (134)
                      .+++..++.||++++++.-..+|.+.+....-.+....+..+  ..+..+.|.-+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            368999999999999999899999888876555555555433  455666666543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=95.52  E-value=0.13  Score=26.13  Aligned_cols=52  Identities=15%  Similarity=0.056  Sum_probs=35.2

Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~d~  132 (134)
                      +..+|.+..||..+++....+..-...+.+++++|+.+++.+.  ..+|.-|-+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            3456778899998887666565555678999999999888764  356555543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=95.37  E-value=0.23  Score=35.78  Aligned_cols=77  Identities=13%  Similarity=0.133  Sum_probs=51.6

Q ss_pred             eeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEE-ecCCC-----eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLAT-GSNDK-----NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      |.+-|.....+... ++....+.+ ..|||||+.++. .+..+     .|++-++++...-...+......|..-...++
T Consensus       331 L~~~D~dG~n~~~ve~~~~~~i~s-P~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~  409 (912)
T TIGR02171       331 LAYIDYTKGASRAVEIEDTISVYH-PDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN  409 (912)
T ss_pred             EEEEecCCCCceEEEecCCCceec-CcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence            44556554444433 566667777 999999999987 44333     58888988765444455556677777777777


Q ss_pred             CCEEE
Q psy6446          75 NTRLI   79 (134)
Q Consensus        75 ~~~l~   79 (134)
                      |...+
T Consensus       410 gdt~i  414 (912)
T TIGR02171       410 GDTVI  414 (912)
T ss_pred             CCeEE
Confidence            76544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG3630|consensus

Probab=95.24  E-value=0.11  Score=38.30  Aligned_cols=106  Identities=10%  Similarity=0.007  Sum_probs=66.3

Q ss_pred             EEEccCCcEEEEe--cCCCeEEEEECCCCCCCC----eEE------eCCCCCEeEEEEeeCCC-EEEEeeCCCcEEEEec
Q psy6446          26 VHFATDSYRLATG--SNDKNIRIYDLNKPDAEP----TVY------RGHSSGIKHVQFFKNNT-RLISCAEDKTVRLWDV   92 (134)
Q Consensus        26 ~~~~~~~~~l~~~--~~d~~v~i~~~~~~~~~~----~~~------~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~   92 (134)
                      +...+|+...++.  +++-.|..||+++-....    ..+      ........++.|+|.-. ..+.+..|+.|++..+
T Consensus       106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~  185 (1405)
T KOG3630|consen  106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST  185 (1405)
T ss_pred             EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence            6666776655443  344478899987632211    111      12233456777887543 3456677888888766


Q ss_pred             CCCc-eeEEEecCCCCeEEEEccCCcEEEEec-CCeEEEEe
Q psy6446          93 SASA-EVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLD  131 (134)
Q Consensus        93 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d  131 (134)
                      .... ....++......+++|+|.|..+++|. .|++.-|-
T Consensus       186 ~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  186 KQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             hhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEee
Confidence            5322 223344566779999999999999984 58877664

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.20  E-value=0.24  Score=27.21  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             EEeeCCCEEEEeeCCCcEEEEecCC--------CceeEEEecCCCCeEEEEcc-----CCcEEEEecCCeEEEEeCC
Q psy6446          70 QFFKNNTRLISCAEDKTVRLWDVSA--------SAEVQKLEFGAVPNSLEISR-----DGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        70 ~~~~~~~~l~~~~~d~~i~~~d~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~i~d~~  133 (134)
                      +|......|+.+..-+.|.+++...        ...+..+.....|.+++-.+     +...|+.+....+..||++
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            4444445677777778888887653        33456666677777776433     2357888989999999985

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.16  E-value=0.46  Score=30.10  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce-eEEEecCCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE-VQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      ....+.+..+.-++++++++.+..-....-||.....- .........+..+.|.|++.+.+++..|.|+.=+
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~  213 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD  213 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence            44456788888889999888877666677777543221 2222246789999999999887777778777643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.09  E-value=0.57  Score=30.87  Aligned_cols=95  Identities=14%  Similarity=0.234  Sum_probs=51.9

Q ss_pred             EEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe-----eCCCEEEEeeCCCcEEEEecCCCceeEEEecCC----
Q psy6446          35 LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF-----KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA----  105 (134)
Q Consensus        35 l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----  105 (134)
                      ++....+..++++...+.+.....+ ...-....+.+-     ..+..|++-..+|.++++.+..-+.+.......    
T Consensus       228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            3333446789999887755443333 221223334442     256678888999999999999988888777532    


Q ss_pred             -CCeEEEEccCCcEEEEecCCeEEEE
Q psy6446         106 -VPNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus       106 -~v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                       ......++++|..+...+...+.++
T Consensus       307 ~~~~~ssis~~Gdi~~~~gpsE~~l~  332 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPSEIQLF  332 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred             ccccccEECCCCCEEEEeCcccEEEE
Confidence             2456777899987776555444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=95.04  E-value=0.1  Score=21.94  Aligned_cols=40  Identities=25%  Similarity=0.274  Sum_probs=22.1

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK   51 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~   51 (134)
                      |+.+.+++........+..  .+..++.++.||.++.+|.++
T Consensus         1 G~~~W~~~~~~~~~~~~~v--~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen    1 GKVLWSYDTGGPIWSSPAV--AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             S-EEEEEE-SS---S--EE--CTSEEEEE-TTSEEEEEETT-
T ss_pred             CceeEEEECCCCcCcCCEE--ECCEEEEEcCCCEEEEEeCCC
Confidence            3455566644444443444  466888999999999998753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.84  E-value=0.95  Score=32.17  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CCcEEEEecCCCeEEEEECCC-------C----CC-------CCeEEeCCCCCEeEEEEe--eCCCEEEEeeCCCcEEEE
Q psy6446          31 DSYRLATGSNDKNIRIYDLNK-------P----DA-------EPTVYRGHSSGIKHVQFF--KNNTRLISCAEDKTVRLW   90 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~-------~----~~-------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~   90 (134)
                      +...|+.+..||.|.+|....       .    ..       ...........+.+++++  ...+.++.++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            345688899999999996521       0    00       011112234578889988  667777777777778877


Q ss_pred             ecCCC--ce--eEEEecCCCCeEEEEccCC-----c-EEEEe-cCCeEEEEeC
Q psy6446          91 DVSAS--AE--VQKLEFGAVPNSLEISRDG-----T-TITVT-HGSCVTFLDA  132 (134)
Q Consensus        91 d~~~~--~~--~~~~~~~~~v~~~~~~~~~-----~-~l~~~-~~~~i~i~d~  132 (134)
                      -....  +.  .....+...|.+++|-++.     . .++++ -.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            65432  11  1122356678999997754     2 44433 4688888876

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4441|consensus

Probab=94.82  E-value=0.87  Score=31.61  Aligned_cols=129  Identities=11%  Similarity=0.047  Sum_probs=63.5

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCC-C-----eEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSND-K-----NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-~-----~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      +..||..+++......  ....... ++.- ++...++|+.| |     .+..||..+..-.  ....-...-.......
T Consensus       303 ve~yd~~~~~w~~~a~m~~~r~~~~-~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~--~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMPSPRCRVG-VAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT--PVAPMNTKRSDFGVAV  378 (571)
T ss_pred             eEEecCCcCcEeecCCCCccccccc-EEEE-CCEEEEEccccCCCcccceEEEecCCCCcee--ccCCccCccccceeEE
Confidence            5567777664433322  2222222 3333 56778888888 3     5677887764411  1111111111222222


Q ss_pred             -CCCEEEEeeCCC-----cEEEEecCCCceeEEEecCCCCeEEEE-ccCCcEEEEec-C------CeEEEEeCCC
Q psy6446          74 -NNTRLISCAEDK-----TVRLWDVSASAEVQKLEFGAVPNSLEI-SRDGTTITVTH-G------SCVTFLDANS  134 (134)
Q Consensus        74 -~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-~------~~i~i~d~~t  134 (134)
                       +|...+.|+.||     ++..||..+.+....-+......+... .-+|...++|+ +      ..+..||..+
T Consensus       379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t  453 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET  453 (571)
T ss_pred             ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence             677778888886     477788776543322222112222221 22455555442 2      3677777653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.77  E-value=0.55  Score=29.08  Aligned_cols=97  Identities=14%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCcee-eEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKS-SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      .|+.+|+.+++.+....-+...+. -+... +++.....=.++...+||..+.+.. ..+. ..+.=..++  .+++.|+
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~-~~~~-y~~EGWGLt--~dg~~Li  143 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI-GTFP-YPGEGWGLT--SDGKRLI  143 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE-EEEE--SSS--EEE--ECSSCEE
T ss_pred             EEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE-EEEe-cCCcceEEE--cCCCEEE
Confidence            378899999998887775444432 13332 2333344456789999999875433 2332 223334554  5788888


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .+.....+..+|..+.+....+.
T Consensus       144 ~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  144 MSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EECCccceEEECCcccceEEEEE
Confidence            88888889999998877766665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444|consensus

Probab=94.38  E-value=0.15  Score=30.63  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC-CCEeEEEEeeCCCEEEEe--eCCCcEEEEecC
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS-SGIKHVQFFKNNTRLISC--AEDKTVRLWDVS   93 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~   93 (134)
                      ++.+..+++.+|.++.|++...+..- ....|. .+......+..++.+...  +.|..++.|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g-~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLG-YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceee-eeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            55678899999999999987654332 222333 233333333334444444  455555555554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.18  E-value=0.97  Score=32.55  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             CCEeEEEEee-CCCEEEEeeCCCcEEEEecCCCce----eEEEe--cC----------CCCeEEEEccCCcEEEEecCCe
Q psy6446          64 SGIKHVQFFK-NNTRLISCAEDKTVRLWDVSASAE----VQKLE--FG----------AVPNSLEISRDGTTITVTHGSC  126 (134)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~--~~----------~~v~~~~~~~~~~~l~~~~~~~  126 (134)
                      .+..+++|+| +.+.++.....|...+|++..+..    ...+.  ..          ..-..+.|.++-..|+++....
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            4678899999 667899999999999999922111    11111  01          1224778888878888887788


Q ss_pred             EEEEeCCC
Q psy6446         127 VTFLDANS  134 (134)
Q Consensus       127 i~i~d~~t  134 (134)
                      +.++|+++
T Consensus       226 l~~~d~~~  233 (765)
T PF10214_consen  226 LMLIDFES  233 (765)
T ss_pred             eEEEECCC
Confidence            88888764

These proteins are found in fungi.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.13  E-value=1  Score=30.78  Aligned_cols=61  Identities=26%  Similarity=0.381  Sum_probs=45.9

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   93 (134)
                      ...++++++..|.|++||.-. ......+.+-...|..+..+.+|+++++.+. ..+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            456899999999999999643 3334456677789999999999999876554 356666654

>PRK13684 Ycf48-like protein; Provisional

Probab=94.12  E-value=0.94  Score=29.11  Aligned_cols=103  Identities=14%  Similarity=0.052  Sum_probs=56.0

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  101 (134)
                      +..+.+.|++..++++. .|.+..- .+.+.. -......-...+..+.+.++++.++. +..|.+.+-....+..-...
T Consensus       175 ~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        175 VRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             EEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccc
Confidence            34477788776665554 4544421 111111 11112233457888999988876655 45566543223333322211


Q ss_pred             ec-----CCCCeEEEEccCCcEEEEecCCeEE
Q psy6446         102 EF-----GAVPNSLEISRDGTTITVTHGSCVT  128 (134)
Q Consensus       102 ~~-----~~~v~~~~~~~~~~~l~~~~~~~i~  128 (134)
                      ..     ...+..+.+.|++..++++.+|.+.
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~  283 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL  283 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence            11     2346778888888888877776554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.10  E-value=1.3  Score=30.72  Aligned_cols=69  Identities=12%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe-eCCCcEEEEecCC
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC-AEDKTVRLWDVSA   94 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~   94 (134)
                      +.|+|....|++-..+..-.+++.+........--...+.|.+.+|.+||+.|+.+ +..-.-.+||-..
T Consensus       118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            78999888877665544444566655433222222456789999999999988754 3334567888543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.06  E-value=0.88  Score=28.54  Aligned_cols=95  Identities=13%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec------CCCeEEEEECCCCCCCCeEEeC-----CCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS------NDKNIRIYDLNKPDAEPTVYRG-----HSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~-----~~~~v~~~~   70 (134)
                      |++||..+.+-...-..-...+..+.|..+.+.++.|.      ....+..||+.+..-  ..+.+     -.++|..+.
T Consensus        18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEEEE
Confidence            68899876655443334445566699986666666653      345677888876432  12222     246788887


Q ss_pred             Eee-CCC-EEEEee-C--CCcEEEEecCCCcee
Q psy6446          71 FFK-NNT-RLISCA-E--DKTVRLWDVSASAEV   98 (134)
Q Consensus        71 ~~~-~~~-~l~~~~-~--d~~i~~~d~~~~~~~   98 (134)
                      +.. |+. ..+.|. .  +..+..||-.+...+
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence            754 443 333333 2  335777775554433

>PHA03098 kelch-like protein; Provisional

Probab=94.03  E-value=1.3  Score=30.33  Aligned_cols=101  Identities=12%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             CCcEEEEecCC------CeEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEEEeeCC--------CcEEEEecCCC
Q psy6446          31 DSYRLATGSND------KNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLISCAED--------KTVRLWDVSAS   95 (134)
Q Consensus        31 ~~~~l~~~~~d------~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~   95 (134)
                      +++..+.|+.+      ..+..||..+..-.. .......... + ....++...+.|+.+        ..+..||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56666777632      357788877532110 0000011111 1 222355555666542        13788888766


Q ss_pred             ceeEEEe--cCCCCeEEEEccCCcEEEEec------CCeEEEEeCCC
Q psy6446          96 AEVQKLE--FGAVPNSLEISRDGTTITVTH------GSCVTFLDANS  134 (134)
Q Consensus        96 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~------~~~i~i~d~~t  134 (134)
                      +....-.  ....-.+++. .++..++.|+      .+.+.+||.++
T Consensus       467 ~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        467 KWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            5433211  1111112222 2556555543      24788898764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.94  E-value=0.67  Score=26.70  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=20.3

Q ss_pred             CCCeEEEEccCC-----c-EEEE-ecCCeEEEEeC
Q psy6446         105 AVPNSLEISRDG-----T-TITV-THGSCVTFLDA  132 (134)
Q Consensus       105 ~~v~~~~~~~~~-----~-~l~~-~~~~~i~i~d~  132 (134)
                      ..+..++|||.|     + +|++ +.++.|.+|..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            378899999955     3 3443 47899999864

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.84  E-value=1.1  Score=28.80  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCC-CCCe----EEeCCCCCEeEEEEeeC---CCEEEEeeC-C--------CcE
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPT----VYRGHSSGIKHVQFFKN---NTRLISCAE-D--------KTV   87 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~-d--------~~i   87 (134)
                      .++|.|+|+.+++ ...|.|++++.+... ....    ...........++++|+   ..+|..... .        ..|
T Consensus         6 ~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v   84 (331)
T PF07995_consen    6 SMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV   84 (331)
T ss_dssp             EEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred             EEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence            3999999877665 559999999933221 1111    11233457899999984   344433222 1        234


Q ss_pred             EEEecCCC--c-----ee-EEEec----CCCCeEEEEccCCcEEEE
Q psy6446          88 RLWDVSAS--A-----EV-QKLEF----GAVPNSLEISRDGTTITV  121 (134)
Q Consensus        88 ~~~d~~~~--~-----~~-~~~~~----~~~v~~~~~~~~~~~l~~  121 (134)
                      .-|....+  .     .+ ..+..    ......+.|.|||.+.++
T Consensus        85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs  130 (331)
T PF07995_consen   85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS  130 (331)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred             EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence            44444333  1     11 11112    123467999999966554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=93.82  E-value=0.22  Score=20.85  Aligned_cols=20  Identities=25%  Similarity=0.205  Sum_probs=13.8

Q ss_pred             CCcEEEEecCCeEEEEeCCC
Q psy6446         115 DGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus       115 ~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++..++.+.+|.++.+|.+|
T Consensus        21 ~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   21 GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             TSEEEEE-TTSEEEEEETT-
T ss_pred             CCEEEEEcCCCEEEEEeCCC
Confidence            45555566789999999875

>KOG1897|consensus

Probab=93.80  E-value=2  Score=31.72  Aligned_cols=107  Identities=5%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC--CC----EEEEeeCCCcEEEE-ecCCCcee
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN--NT----RLISCAEDKTVRLW-DVSASAEV   98 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~----~l~~~~~d~~i~~~-d~~~~~~~   98 (134)
                      ...+.+...++.++.++.+...++..........+.-...|.|++++|-  ++    .++.|..+..+.+. -+.+....
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~  572 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI  572 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee
Confidence            3334455567777777777777766544111222334578999999973  32    56677766554333 33333333


Q ss_pred             EEEe--cCCCCeE---EEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          99 QKLE--FGAVPNS---LEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        99 ~~~~--~~~~v~~---~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ....  .+...++   ..+-.|..+|.++ +||.+..|.+
T Consensus       573 ~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~  612 (1096)
T KOG1897|consen  573 THEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL  612 (1096)
T ss_pred             eeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence            2221  2222233   3344456677766 7888777654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.24  E-value=1.6  Score=29.03  Aligned_cols=88  Identities=11%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             EEEccCCcEEEEecCCCeEEE---EECCCCC-CCC-e--EEe---CCC--CCEeEEEEee-----------CCCEEEEee
Q psy6446          26 VHFATDSYRLATGSNDKNIRI---YDLNKPD-AEP-T--VYR---GHS--SGIKHVQFFK-----------NNTRLISCA   82 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i---~~~~~~~-~~~-~--~~~---~~~--~~v~~~~~~~-----------~~~~l~~~~   82 (134)
                      +..+|++..|+.+..+..+.+   |+..... ... .  ...   .+.  ..|+++.+-|           |...++.|.
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~   86 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT   86 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence            778899999999987766555   5332111 100 0  111   111  4577776654           245678899


Q ss_pred             CCCcEEEEecCCCceeEEEecCCCCeEEEEc
Q psy6446          83 EDKTVRLWDVSASAEVQKLEFGAVPNSLEIS  113 (134)
Q Consensus        83 ~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~  113 (134)
                      .+|.+++|.....-....+.|+.+|..+...
T Consensus        87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             cccEEEEEeccchHHHHHhcCccceEEEEec
Confidence            9999999976433333344466777776654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.19  E-value=1.5  Score=28.49  Aligned_cols=72  Identities=13%  Similarity=0.003  Sum_probs=43.8

Q ss_pred             cEEEEecCCCeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCC
Q psy6446          33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA  105 (134)
Q Consensus        33 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  105 (134)
                      ..++++..+|.+.-.|..++.......... ...+..-.+..+|+ ++.++.++.+..+|.++++.........
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            345555778888888887765322111110 12223333333555 7777888888889988888888776555

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.12  E-value=1.1  Score=26.87  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=35.2

Q ss_pred             CEEEEeeCCCcEEEEecCC--CceeEEEecCCCCeEEEEccCCcEEEEe
Q psy6446          76 TRLISCAEDKTVRLWDVSA--SAEVQKLEFGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~  122 (134)
                      +.|+.+.....|.+|++.+  .+....+..-+.|..+.++..|.++++-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence            4454446667799999883  3455566666889999999999999974

>PHA02713 hypothetical protein; Provisional

Probab=93.01  E-value=2.1  Score=29.68  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=15.5

Q ss_pred             CCcEEEEecCCC-----eEEEEECCCC
Q psy6446          31 DSYRLATGSNDK-----NIRIYDLNKP   52 (134)
Q Consensus        31 ~~~~l~~~~~d~-----~v~i~~~~~~   52 (134)
                      +++..+.|+.++     .+..||..+.
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCC
Confidence            677777887654     4778887753

>KOG2377|consensus

Probab=92.91  E-value=2  Score=29.09  Aligned_cols=97  Identities=11%  Similarity=0.160  Sum_probs=56.3

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC---eEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-e
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP---TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-E   97 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~   97 (134)
                      .+.++.|++|.+.|++--.+..|.+++........   ...+.....|....|+.+ ..++.....| +-+|.+...+ .
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs  145 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS  145 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh
Confidence            44459999999999999999999999985432211   122233345778888754 4455444443 4555443222 1


Q ss_pred             eEEEe-cCCCCeEEEEccCCcEEE
Q psy6446          98 VQKLE-FGAVPNSLEISRDGTTIT  120 (134)
Q Consensus        98 ~~~~~-~~~~v~~~~~~~~~~~l~  120 (134)
                      ++... +...|.=..|.++.+.++
T Consensus       146 lRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  146 LRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhcccCccEEEEccccceEe
Confidence            11111 234455556666665544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.86  E-value=1.4  Score=27.10  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC-C--CeEEEEECCCC--CCCCeEE---eCCCCCEeEEEEeeC
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN-D--KNIRIYDLNKP--DAEPTVY---RGHSSGIKHVQFFKN   74 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--~~v~i~~~~~~--~~~~~~~---~~~~~~v~~~~~~~~   74 (134)
                      .+||+.+++....--..+...+.-.+-+||+++.+|+. +  ..+++++....  .+.....   -.....-.....-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            47888877653321133333333556789999998865 2  35777775441  1111100   011223344555679


Q ss_pred             CCEEEEeeCCC-cEEEEecCC-CceeEEEe---c------CCCCeEEEEccCCcEEEEecC
Q psy6446          75 NTRLISCAEDK-TVRLWDVSA-SAEVQKLE---F------GAVPNSLEISRDGTTITVTHG  124 (134)
Q Consensus        75 ~~~l~~~~~d~-~i~~~d~~~-~~~~~~~~---~------~~~v~~~~~~~~~~~l~~~~~  124 (134)
                      |+.++.|+... ....|+-.. ......+.   .      ...-.-+-..|+|+.++.+..
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~  189 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR  189 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence            99998888764 345555422 11111111   0      011135666789998877654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.80  E-value=0.34  Score=20.04  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=15.7

Q ss_pred             eeeEEEccCCcEEEEecC-C--CeEEEE
Q psy6446          23 KSSVHFATDSYRLATGSN-D--KNIRIY   47 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~-d--~~v~i~   47 (134)
                      .....|+|||+.|+-.+. +  |...||
T Consensus        11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334999999998876543 3  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1916|consensus

Probab=92.80  E-value=0.24  Score=35.87  Aligned_cols=72  Identities=11%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCC-CC---CCeEEeCCC-C-CEeEEEEeeCC---------CEEEEee-CCCcEEE
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKP-DA---EPTVYRGHS-S-GIKHVQFFKNN---------TRLISCA-EDKTVRL   89 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~---~~~~~~~~~-~-~v~~~~~~~~~---------~~l~~~~-~d~~i~~   89 (134)
                      -..+|||+.++.++.||.++.|.+.-. +.   .....+.|. + .|+.+ ++.+.         .++++++ .+..+++
T Consensus       241 ~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~  319 (1283)
T KOG1916|consen  241 ASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKF  319 (1283)
T ss_pred             eeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeE
Confidence            347899999999999999888876421 11   112234454 2 23333 43222         2233433 4556888


Q ss_pred             EecCCCcee
Q psy6446          90 WDVSASAEV   98 (134)
Q Consensus        90 ~d~~~~~~~   98 (134)
                      |.....+|.
T Consensus       320 w~~a~w~Cl  328 (1283)
T KOG1916|consen  320 WAEAPWQCL  328 (1283)
T ss_pred             eeccchhhh
Confidence            887776665

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.54  E-value=2  Score=28.25  Aligned_cols=129  Identities=17%  Similarity=0.235  Sum_probs=71.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEE----ccCCcE--EEEec-CC---CeEEEEECCCCCCCCeEEe-------CCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHF----ATDSYR--LATGS-ND---KNIRIYDLNKPDAEPTVYR-------GHSS   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--l~~~~-~d---~~v~i~~~~~~~~~~~~~~-------~~~~   64 (134)
                      +.+||+. |+.+..+... ...+ +..    .-.|+.  |+.++ ++   ..|++|.+...........       ....
T Consensus        80 L~VYdL~-Gk~lq~~~~G-r~NN-VDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~  156 (381)
T PF02333_consen   80 LYVYDLD-GKELQSLPVG-RPNN-VDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLS  156 (381)
T ss_dssp             EEEEETT-S-EEEEE-SS--EEE-EEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSS
T ss_pred             EEEEcCC-CcEEEeecCC-Ccce-eeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccc
Confidence            5689976 7777776521 2222 222    223443  44443 32   4689997764221111111       1123


Q ss_pred             CEeEEEEe--e-CCC-EEEEeeCCCcEEEEecC---CC----ceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          65 GIKHVQFF--K-NNT-RLISCAEDKTVRLWDVS---AS----AEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        65 ~v~~~~~~--~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+..+++-  + +++ +.+....+|.+..|.+.   .+    +.++.+...+.+..+..+....+|..+ .+.-|+-|+.
T Consensus       157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A  236 (381)
T PF02333_consen  157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDA  236 (381)
T ss_dssp             SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEec
Confidence            46777764  3 344 45567788988877764   23    356777777888899988887778777 5677887776


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      +
T Consensus       237 e  237 (381)
T PF02333_consen  237 E  237 (381)
T ss_dssp             S
T ss_pred             C
Confidence            4

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.28  E-value=2.1  Score=27.90  Aligned_cols=95  Identities=7%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCC----CCCeEEe---C----CCCCEeEEEEeeCCCEEEEeeCC---------
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPD----AEPTVYR---G----HSSGIKHVQFFKNNTRLISCAED---------   84 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~---~----~~~~v~~~~~~~~~~~l~~~~~d---------   84 (134)
                      .+++.+++  +++++.....++.|.....    .....+.   .    +......+.|.||+...++.+..         
T Consensus        76 Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~  153 (367)
T TIGR02604        76 GLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPG  153 (367)
T ss_pred             ceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCC
Confidence            37788777  4444444433344543211    1111111   1    13447789999999876654421         


Q ss_pred             ----------CcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe
Q psy6446          85 ----------KTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        85 ----------~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~  122 (134)
                                +.+.-++..+++ ...+.. ......++|+|+|.++++-
T Consensus       154 ~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       154 TSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEc
Confidence                      334444444333 222222 2335789999999887764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.19  E-value=1.6  Score=26.30  Aligned_cols=117  Identities=12%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             eeEEeeCCCceee-EEEccCCcEEEEecC--CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE-EeeCCCcEE
Q psy6446          13 LHSFQHPHIVKSS-VHFATDSYRLATGSN--DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI-SCAEDKTVR   88 (134)
Q Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~   88 (134)
                      ++++.|....++- +.. .++..+.+.+.  ...|++||+.+++......-. ...+..--...-+..+. ..-.++...
T Consensus        37 i~~yphDs~sfTQGL~~-~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf  114 (262)
T COG3823          37 IRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAF  114 (262)
T ss_pred             EEeccCchhhhhcceee-eCCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeE
Confidence            4444454443331 222 24545555544  347999999976643221111 12222222222233332 234577788


Q ss_pred             EEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          89 LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        89 ~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      .+|..+.+++..+..++.-..++-... +.+.+.+...+..-|.
T Consensus       115 ~~d~~t~~~lg~~~y~GeGWgLt~d~~-~LimsdGsatL~frdP  157 (262)
T COG3823         115 KYDADTLEELGRFSYEGEGWGLTSDDK-NLIMSDGSATLQFRDP  157 (262)
T ss_pred             EEChHHhhhhcccccCCcceeeecCCc-ceEeeCCceEEEecCH
Confidence            888888888887777666666654322 2333333445555443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.02  E-value=1.8  Score=26.62  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=60.4

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEE-CCCCCCCCeEEeCC--CCCEeEEEEeeCCCEEEEee---CCCcEEEEecC--
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYD-LNKPDAEPTVYRGH--SSGIKHVQFFKNNTRLISCA---EDKTVRLWDVS--   93 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~--   93 (134)
                      .+....|++++...+....+...+++. ...+..........  .+.|..++++|||..++...   .++.+.+--+.  
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            344488999987777766666666663 22222221122211  12899999999999887655   24566665443  


Q ss_pred             -CCcee------EEEe-cCCCCeEEEEccCCcEEEEe
Q psy6446          94 -ASAEV------QKLE-FGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        94 -~~~~~------~~~~-~~~~v~~~~~~~~~~~l~~~  122 (134)
                       .+...      .... ....+..+.|.+++.+++.+
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence             22011      1111 23577899999999887765

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4460|consensus

Probab=91.94  E-value=2.9  Score=28.92  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECC---------CCCCCC---------eEEe-CCCCCEeEEEEeeCC---CEEEEeeC
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLN---------KPDAEP---------TVYR-GHSSGIKHVQFFKNN---TRLISCAE   83 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~---------~~~~~~---------~~~~-~~~~~v~~~~~~~~~---~~l~~~~~   83 (134)
                      +..++.|..++..+.+|.+.++-.+         .++...         +.+. ...-.+.+++|+|+.   ..|..-..
T Consensus       109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s  188 (741)
T KOG4460|consen  109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS  188 (741)
T ss_pred             EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence            6668889998888888866554321         111110         0111 112346788999965   67888889


Q ss_pred             CCcEEEEecCCCceeE
Q psy6446          84 DKTVRLWDVSASAEVQ   99 (134)
Q Consensus        84 d~~i~~~d~~~~~~~~   99 (134)
                      |+.+++||+.....+.
T Consensus       189 dnviRiy~lS~~tely  204 (741)
T KOG4460|consen  189 DNVIRIYSLSEPTELY  204 (741)
T ss_pred             CcEEEEEecCCcchhh
Confidence            9999999998765543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.90  E-value=3.7  Score=29.83  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             eeEeecCCCceeeEEeeCC-------------------CceeeEEEccCCcEEEE-ecCCCeEEEEECCCCCCCCeEEeC
Q psy6446           2 GTVWDAVSGEELHSFQHPH-------------------IVKSSVHFATDSYRLAT-GSNDKNIRIYDLNKPDAEPTVYRG   61 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~   61 (134)
                      |.-+|+.+|+.+...+...                   .... -...-.+.+++. ++.|+.++-+|.++++.+-+....
T Consensus       643 l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~g-G~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l~  721 (764)
T TIGR03074       643 MAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLG-GPLATAGGLVFIGATQDNYLRAYDLSTGKELWKARLP  721 (764)
T ss_pred             EEEEECCCCcEeeeeECCccccccccccccccccccCCcccC-CcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeCC
Confidence            6778999999888776320                   0001 111224566766 788999999999998866544333


Q ss_pred             CCCCEeEEEEe-eCCCE
Q psy6446          62 HSSGIKHVQFF-KNNTR   77 (134)
Q Consensus        62 ~~~~v~~~~~~-~~~~~   77 (134)
                      ....-.=+.+. .+|+.
T Consensus       722 ~~~~a~P~tY~~~~GkQ  738 (764)
T TIGR03074       722 AGGQATPMTYMGKDGKQ  738 (764)
T ss_pred             CCcccCCEEEEecCCEE
Confidence            22223334455 46643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897|consensus

Probab=91.66  E-value=4.3  Score=30.16  Aligned_cols=97  Identities=11%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc--eeEEEe--cCCC
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA--EVQKLE--FGAV  106 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~--~~~~  106 (134)
                      +|+++|.-  ...|++|++.+.+.. +....+..++..+...-.+..++.|.--+.+.+...+..+  -.....  ++..
T Consensus       839 ngkllA~I--n~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W  915 (1096)
T KOG1897|consen  839 NGKLLAGI--NQSVRLYEWTTEREL-RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW  915 (1096)
T ss_pred             CCeEEEec--CcEEEEEEcccccee-hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence            46555443  468999999876443 4455677889999999899999999988887776655433  222222  4556


Q ss_pred             CeEEEEccCCcEEEEecCCeEEEE
Q psy6446         107 PNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus       107 v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      +.++.+-.+..++.+-.+|.+.+.
T Consensus       916 mtaveil~~d~ylgae~~gNlf~v  939 (1096)
T KOG1897|consen  916 MTAVEILDDDTYLGAENSGNLFTV  939 (1096)
T ss_pred             eeeEEEecCceEEeecccccEEEE
Confidence            677777666566655566666654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.55  E-value=2.4  Score=27.00  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             EEccCCcEEEEecCCCeEEEEECCCCCCCCeE--EeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--
Q psy6446          27 HFATDSYRLATGSNDKNIRIYDLNKPDAEPTV--YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--  102 (134)
Q Consensus        27 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--  102 (134)
                      .|.-.|+++.++..|.-.-+.|+.+...+...  +.........++.+  |++-..+..|+-+.+-|+.+......+.  
T Consensus       133 gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~  210 (370)
T COG5276         133 GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY  210 (370)
T ss_pred             EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence            33446888888886666778898876654321  22223333455554  6677777788889999998776555444  


Q ss_pred             -cCCCCeEEEEccCCcEEEEec
Q psy6446         103 -FGAVPNSLEISRDGTTITVTH  123 (134)
Q Consensus       103 -~~~~v~~~~~~~~~~~l~~~~  123 (134)
                       .+..+.++..+++..+++...
T Consensus       211 n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         211 NTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             ecCCceEEEEecCCeeEEEEcc
Confidence             344678888887766665443

>KOG2280|consensus

Probab=91.03  E-value=1.3  Score=31.54  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCC
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK   51 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~   51 (134)
                      |+||+. +|+.+..+- .+...+. +.|+.+. .|++...+|.+++|++-.
T Consensus        66 I~If~~-sG~lL~~~~w~~~~lI~-mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   66 IRIFNI-SGQLLGRILWKHGELIG-MGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             EEEEec-cccchHHHHhcCCCeee-ecccCCc-eEEEEeccceEEEeecch
Confidence            677885 477776655 3346777 9999765 566667999999999864

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.86  E-value=3.4  Score=27.47  Aligned_cols=100  Identities=7%  Similarity=0.031  Sum_probs=55.2

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCC-CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-----eeE
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-----EVQ   99 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~   99 (134)
                      +..++++..++.+..-..++-||-..  .. ..........+..+.+.+++..++.+ ..|.+..- ...++     ...
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~  319 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFE  319 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCccccccee
Confidence            44566776666665433223343221  11 11122334568889998888777654 55554332 33333     222


Q ss_pred             EEec---CCCCeEEEEccCCcEEEEecCCeEEE
Q psy6446         100 KLEF---GAVPNSLEISRDGTTITVTHGSCVTF  129 (134)
Q Consensus       100 ~~~~---~~~v~~~~~~~~~~~l~~~~~~~i~i  129 (134)
                      ....   ...+..+.+.+++..++++..|.+..
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~  352 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAAGGSGILLR  352 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence            2222   23478888998988888887776654

>smart00564 PQQ beta-propeller repeat

Probab=90.65  E-value=0.59  Score=18.35  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=19.4

Q ss_pred             EEEEeeCCCcEEEEecCCCceeEE
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQK  100 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~  100 (134)
                      .++.++.++.+..+|..+|+....
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577778889999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.61  E-value=2  Score=31.24  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             EEEccCCcEEEEecCCC-----eEEEEECCCCCCC-CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          26 VHFATDSYRLATGSNDK-----NIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      +.|.|+|..+++-..||     .|.++..+.-..- ...-.+....+...+|+-....++ ....+.+++|-..+-....
T Consensus       252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhWYL  330 (1243)
T COG5290         252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHWYL  330 (1243)
T ss_pred             cccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEEEE
Confidence            89999999999876554     3444443221100 001112233455666654333332 3445679999765544333


Q ss_pred             EEe-cCCCCeEEEEccCCc-EEEEecCCeE
Q psy6446         100 KLE-FGAVPNSLEISRDGT-TITVTHGSCV  127 (134)
Q Consensus       100 ~~~-~~~~v~~~~~~~~~~-~l~~~~~~~i  127 (134)
                      ... .-..+.-++|+|... .+.....+.|
T Consensus       331 K~e~~ip~~s~vkwhpe~~nTl~f~d~~~I  360 (1243)
T COG5290         331 KVERQIPGISYVKWHPEEKNTLLFRDGERI  360 (1243)
T ss_pred             EEeecCCCcceeeeccccCcEEEEecCCeE
Confidence            322 234567788998653 3444433443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.51  E-value=4  Score=27.69  Aligned_cols=106  Identities=9%  Similarity=0.074  Sum_probs=58.1

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-C----eEEe-CCCCCEeEEEEeeCC------CEEEEee---
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-P----TVYR-GHSSGIKHVQFFKNN------TRLISCA---   82 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~----~~~~-~~~~~v~~~~~~~~~------~~l~~~~---   82 (134)
                      +-..... ++|.|++++|++--..|.|++++....... .    .... .-.+....++++|+.      .++....   
T Consensus        28 GL~~Pw~-maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        28 GLNKPWA-LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCceE-EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            3344445 999999977766554699999876543211 1    1111 135678999999875      2444332   


Q ss_pred             -------CCCcEEEEecCCC--c---eeEEEe-c----CCCCeEEEEccCCcEEEEecC
Q psy6446          83 -------EDKTVRLWDVSAS--A---EVQKLE-F----GAVPNSLEISRDGTTITVTHG  124 (134)
Q Consensus        83 -------~d~~i~~~d~~~~--~---~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~  124 (134)
                             ....|.-+.+...  .   ....+. .    ...-..+.|.|||.+.++.+|
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                   1233444544321  1   111111 1    122467889999986665433

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4441|consensus

Probab=90.28  E-value=4.8  Score=28.21  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             CCcEEEEecCCC------eEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEEEeeCCC-----cEEEEecCCCcee
Q psy6446          31 DSYRLATGSNDK------NIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLISCAEDK-----TVRLWDVSASAEV   98 (134)
Q Consensus        31 ~~~~l~~~~~d~------~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~   98 (134)
                      +|...++|+.++      .+..||..+..-.. ........... ++. -++...+.|+.|+     ++..||..+.+..
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            677778887554      46778877643110 00111111111 222 2666677777665     3677888776655


Q ss_pred             EEEecCCCC--eEEEEccCCcEEEE-ecC-----CeEEEEeCCC
Q psy6446          99 QKLEFGAVP--NSLEISRDGTTITV-THG-----SCVTFLDANS  134 (134)
Q Consensus        99 ~~~~~~~~v--~~~~~~~~~~~l~~-~~~-----~~i~i~d~~t  134 (134)
                      ..-....+.  ..++.. ++...+. |.+     ++|..||..+
T Consensus       505 ~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EcccCccccccccEEEE-CCEEEEEecccCccccceeEEcCCCC
Confidence            442222222  222222 3444444 433     4677777653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.15  E-value=5.7  Score=28.94  Aligned_cols=71  Identities=10%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC--------CEeEEEEe----------------eCCCEEEEeeCCCcE
Q psy6446          32 SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS--------GIKHVQFF----------------KNNTRLISCAEDKTV   87 (134)
Q Consensus        32 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~d~~i   87 (134)
                      +..++.++.++.|.-.|..+++..-+ +.....        ....+.+.                ..+..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~-~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWK-FDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEE-EcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            56777778888888888888764332 111100        01122221                134477888889999


Q ss_pred             EEEecCCCceeEEEec
Q psy6446          88 RLWDVSASAEVQKLEF  103 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~~  103 (134)
                      .-.|.++|+....+..
T Consensus       273 iALDA~TGk~~W~fg~  288 (764)
T TIGR03074       273 IALDADTGKLCEDFGN  288 (764)
T ss_pred             EEEECCCCCEEEEecC
Confidence            9999999998876643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.11  E-value=1.1  Score=30.80  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             EEEcc----CCcEEEEecCCCeEEEEECCCCCC
Q psy6446          26 VHFAT----DSYRLATGSNDKNIRIYDLNKPDA   54 (134)
Q Consensus        26 ~~~~~----~~~~l~~~~~d~~v~i~~~~~~~~   54 (134)
                      ..++.    +..++++.+.|+.+++||+.++..
T Consensus       220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  220 LAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             EEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            55555    678899999999999999998765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA03098 kelch-like protein; Provisional

Probab=89.88  E-value=4.8  Score=27.68  Aligned_cols=65  Identities=11%  Similarity=0.011  Sum_probs=32.4

Q ss_pred             CCcEEEEecCC-----CeEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEEEeeCC------CcEEEEecCCCce
Q psy6446          31 DSYRLATGSND-----KNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLISCAED------KTVRLWDVSASAE   97 (134)
Q Consensus        31 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~   97 (134)
                      ++..++.|+.+     ..+..||..+..-.. ......... .++ ..-+++..+.|+.+      +.+..||..+.+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            56777777765     246677776533110 000001111 111 12356666666632      3578888876544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.80  E-value=3.8  Score=26.33  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             CceeeEEEccCCcEEEEecCCCe------EEEEECCCCC---CCCe-----EEeCCCC--------CEeEEEEeeCCCEE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKN------IRIYDLNKPD---AEPT-----VYRGHSS--------GIKHVQFFKNNTRL   78 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~------v~i~~~~~~~---~~~~-----~~~~~~~--------~v~~~~~~~~~~~l   78 (134)
                      ..++.+.+.+++..+++.+.+|.      +..+++....   ....     .+....+        ..-++++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34566888875566666666666      5555544310   0000     1111111        34478886788888


Q ss_pred             EEeeCC------CcEEEEecCCCceeEEEe----------------cCCCCeEEEEccCCcEEE
Q psy6446          79 ISCAED------KTVRLWDVSASAEVQKLE----------------FGAVPNSLEISRDGTTIT  120 (134)
Q Consensus        79 ~~~~~d------~~i~~~d~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~  120 (134)
                      ++.-.+      ..|..++.. ++....+.                ......+++++|+|+.|.
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~  162 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF  162 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence            777667      788888866 55544332                123457899999998444

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.72  E-value=3.6  Score=25.96  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee------CCCcEEEEecCCCceeEEEe-----cCCCCe
Q psy6446          40 NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA------EDKTVRLWDVSASAEVQKLE-----FGAVPN  108 (134)
Q Consensus        40 ~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~-----~~~~v~  108 (134)
                      ....+++||....+-. ..-.+-.+.|.++.|..+.+.++.|.      ....+..||..+......-.     .+.++.
T Consensus        14 ~C~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            3567999998764321 22234567899999986666666553      34468888887654322111     135666


Q ss_pred             EEEEcc-CC-cEEEEe----cCCeEEEEeC
Q psy6446         109 SLEISR-DG-TTITVT----HGSCVTFLDA  132 (134)
Q Consensus       109 ~~~~~~-~~-~~l~~~----~~~~i~i~d~  132 (134)
                      .+.+.. ++ ++.+.|    .+..|..||-
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcC
Confidence            676643 33 344433    2245666663

>KOG4499|consensus

Probab=89.60  E-value=3.4  Score=25.51  Aligned_cols=47  Identities=11%  Similarity=-0.003  Sum_probs=36.5

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      ++...+|++.++.-+.+.|...|..+++.+. .++-....+++.+|--
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~-eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILL-EIKLPTPQITSCCFGG  263 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEE-EEEcCCCceEEEEecC
Confidence            4446678888888888999999999987654 4555678899999964

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.44  E-value=4.3  Score=26.52  Aligned_cols=98  Identities=15%  Similarity=0.040  Sum_probs=53.0

Q ss_pred             CceeeEEEccCCcEEEEec-----------CCC-eEEEEECCCCC-C--CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC
Q psy6446          21 IVKSSVHFATDSYRLATGS-----------NDK-NIRIYDLNKPD-A--EPTVYRGHSSGIKHVQFFKNNTRLISCAEDK   85 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~-----------~d~-~v~i~~~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   85 (134)
                      ..+. ++|.++|+++++-.           ..+ .|.+++-..+. .  ....+.........+++.+++ .++ +....
T Consensus        15 ~P~~-ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        15 NPIA-VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCce-eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4455 99999998777643           223 67776643321 1  112333334456889998888 444 34443


Q ss_pred             cEEEEecCCC-----ceeEEEe---c-----CCCCeEEEEccCCcEEEE
Q psy6446          86 TVRLWDVSAS-----AEVQKLE---F-----GAVPNSLEISRDGTTITV  121 (134)
Q Consensus        86 ~i~~~d~~~~-----~~~~~~~---~-----~~~v~~~~~~~~~~~l~~  121 (134)
                      ..++.|....     +....+.   .     ......+.|.|||.+.++
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence            3334344321     2111111   1     123678999999976654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=89.30  E-value=7.2  Score=28.89  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE-eeCCC-----cEEEEecCCC-ceeEEEe-cCCCCeEEEE
Q psy6446          41 DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS-CAEDK-----TVRLWDVSAS-AEVQKLE-FGAVPNSLEI  112 (134)
Q Consensus        41 d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~~d~~~~-~~~~~~~-~~~~v~~~~~  112 (134)
                      .+.+.+-|...... ......+..++.+.+|||||+.++- .+-++     .|.+-|+.+. .-+..+. ....|..-..
T Consensus       328 ~~~L~~~D~dG~n~-~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv  406 (912)
T TIGR02171       328 TGNLAYIDYTKGAS-RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRV  406 (912)
T ss_pred             CCeEEEEecCCCCc-eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEe
Confidence            35788888776443 2222456788999999999999986 33333     4788888753 2223343 3566777777


Q ss_pred             ccCCcEE
Q psy6446         113 SRDGTTI  119 (134)
Q Consensus       113 ~~~~~~l  119 (134)
                      .++|..+
T Consensus       407 ~e~gdt~  413 (912)
T TIGR02171       407 LENGDTV  413 (912)
T ss_pred             cCCCCeE
Confidence            7877543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=88.98  E-value=1  Score=18.63  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEecCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEFGA  105 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  105 (134)
                      .++.+..+|.+.-.|.++|+.+.......
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            34566889999999999999998887543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=88.16  E-value=4.5  Score=25.15  Aligned_cols=68  Identities=13%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             CCCEeEEEEeeC-------CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeE----EEEc-cCCcEEEEecCCeEEEE
Q psy6446          63 SSGIKHVQFFKN-------NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNS----LEIS-RDGTTITVTHGSCVTFL  130 (134)
Q Consensus        63 ~~~v~~~~~~~~-------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~----~~~~-~~~~~l~~~~~~~i~i~  130 (134)
                      ...|++|+--+.       -..|+.|.+++.|.+.|.............+....    -.|. -|.+.++++.||.|.+.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            446788775431       14688999999999999988777777765544322    2344 56677778899988753

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=88.05  E-value=6.3  Score=26.64  Aligned_cols=87  Identities=18%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee--CCCEEEEeeCC
Q psy6446           9 SGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNTRLISCAED   84 (134)
Q Consensus         9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d   84 (134)
                      .+..+-.++  ..+.-+-++.|..|--++++--.-.-+.+.|+..++.+. .+-.-.-+=.+--.+|  +++.|-.|..+
T Consensus       414 ~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPk-vlGeLKIPGfS~YLHpigen~~lGvG~~~  492 (603)
T COG4880         414 NLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPK-VLGELKIPGFSEYLHPIGENRLLGVGAYQ  492 (603)
T ss_pred             CCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCc-eeEEEecCCchhhccccCCCcEEEeeccc
Confidence            345555555  233344448887766667776665678888988876553 2211111112222345  34455566666


Q ss_pred             Cc--EEEEecCCCc
Q psy6446          85 KT--VRLWDVSASA   96 (134)
Q Consensus        85 ~~--i~~~d~~~~~   96 (134)
                      |.  |.+||+.+..
T Consensus       493 g~vKiSLFdiSdl~  506 (603)
T COG4880         493 GGVKISLFDISDLA  506 (603)
T ss_pred             CCceEEEEeccCCC
Confidence            64  6788887543

>PRK13684 Ycf48-like protein; Provisional

Probab=87.98  E-value=5.4  Score=25.78  Aligned_cols=108  Identities=8%  Similarity=0.019  Sum_probs=60.6

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-EE--eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VY--RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV   98 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   98 (134)
                      .+..+.+.++++.++++ ..|.+.+=..+.+..-.. ..  ......+..+.+.+++.. +.++.+|.+.. ....++.-
T Consensus       216 ~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW  292 (334)
T PRK13684        216 RLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTW  292 (334)
T ss_pred             cceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCC
Confidence            34447788888776665 457665322232221110 00  011234678888887664 44556665543 33334433


Q ss_pred             EEEe----cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          99 QKLE----FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        99 ~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ....    .......+.|..+++.++++..|.|..|+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        293 EKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             eECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            3322    123466788877888888888899988763

>KOG1900|consensus

Probab=87.61  E-value=4.8  Score=30.83  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE--------eeCCCEEEEeeCCCcEEEEecCC----Cce-----eEEE
Q psy6446          39 SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF--------FKNNTRLISCAEDKTVRLWDVSA----SAE-----VQKL  101 (134)
Q Consensus        39 ~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~i~~~d~~~----~~~-----~~~~  101 (134)
                      +.|+.+.+|++.++... ..+.+-...|..+..        .|.=++++..+.--.|.++-+..    +..     ...+
T Consensus        96 TiDn~L~lWny~~~~e~-~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNEL-AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCcc-ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            35788999999985433 344555555555543        23334555444444455554321    111     0122


Q ss_pred             ec-CCCCeEEEEccCCcEEEEecCCeE
Q psy6446         102 EF-GAVPNSLEISRDGTTITVTHGSCV  127 (134)
Q Consensus       102 ~~-~~~v~~~~~~~~~~~l~~~~~~~i  127 (134)
                      .. +..|.++....+|+.+.+|.||.|
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~l  201 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNL  201 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCE
Confidence            22 456788988889999999988844

>KOG3616|consensus

Probab=87.58  E-value=1.9  Score=31.22  Aligned_cols=34  Identities=9%  Similarity=0.160  Sum_probs=28.1

Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE   97 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   97 (134)
                      ..+.+++-+|.++.++.+..||.|.+|+....+.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence            4467778789999999999999999999865544

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.36  E-value=2.6  Score=21.51  Aligned_cols=36  Identities=11%  Similarity=0.030  Sum_probs=24.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG   38 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   38 (134)
                      +..||..+++....+.+-..... ++.++|+..++.+
T Consensus        39 ll~ydp~t~~~~vl~~~L~fpNG-Vals~d~~~vlv~   74 (89)
T PF03088_consen   39 LLRYDPSTKETTVLLDGLYFPNG-VALSPDESFVLVA   74 (89)
T ss_dssp             EEEEETTTTEEEEEEEEESSEEE-EEE-TTSSEEEEE
T ss_pred             EEEEECCCCeEEEehhCCCccCe-EEEcCCCCEEEEE
Confidence            45688888776555555555555 9999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1520|consensus

Probab=86.50  E-value=7.2  Score=25.71  Aligned_cols=48  Identities=21%  Similarity=0.201  Sum_probs=28.8

Q ss_pred             CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecC--CeEEEE
Q psy6446          83 EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG--SCVTFL  130 (134)
Q Consensus        83 ~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~i~i~  130 (134)
                      .+|.+.-||..+......+..-.-.+.++.+||+.+++.+..  ..|+-|
T Consensus       197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ry  246 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRY  246 (376)
T ss_pred             CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeee
Confidence            345666666555443333333345678999999999887642  344433

>KOG2247|consensus

Probab=86.47  E-value=0.36  Score=32.54  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l   78 (134)
                      +.+||+.+.. ..+++ +....-+-+.|++....++.+...|.+.+++..+......  .| |...+.+.++.+.+..+
T Consensus        99 iylwd~n~ey-tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen   99 IYLWDVNSEY-TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             eeechhhhhh-HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccceee
Confidence            5678876432 22333 2223333378999888999999999999999887554432  34 88889999998866544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.27  E-value=1.3  Score=16.93  Aligned_cols=23  Identities=9%  Similarity=0.138  Sum_probs=11.6

Q ss_pred             eEEEEeeCCCEEEEeeCCCcEEE
Q psy6446          67 KHVQFFKNNTRLISCAEDKTVRL   89 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~   89 (134)
                      ..+++.++|+.+++-.....|.+
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEE
Confidence            45555555555555444444443

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.82  E-value=9.1  Score=26.20  Aligned_cols=125  Identities=17%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC---CEeEEEEeeCCCEEE
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS---GIKHVQFFKNNTRLI   79 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~   79 (134)
                      .++|. .|.....+.........+..-++|.+++...  +.+..+|+.. + ......-..+   .-..+...|+|++|+
T Consensus       131 ~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~-v~~~~~l~~~~~~~HHD~~~l~nGn~L~  205 (477)
T PF05935_consen  131 YLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-K-VIWEYDLPGGYYDFHHDIDELPNGNLLI  205 (477)
T ss_dssp             EEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS-EEE
T ss_pred             EEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-C-EEEeeecCCcccccccccEECCCCCEEE
Confidence            45563 4666666653322222255667888776655  6777788753 2 1122211111   124566778888888


Q ss_pred             EeeC-------------CCcEEEEecCCCceeEEEec--------C--------------------CCCeEEEEcc-CCc
Q psy6446          80 SCAE-------------DKTVRLWDVSASAEVQKLEF--------G--------------------AVPNSLEISR-DGT  117 (134)
Q Consensus        80 ~~~~-------------d~~i~~~d~~~~~~~~~~~~--------~--------------------~~v~~~~~~~-~~~  117 (134)
                      .+..             +-.|...| .+|+.+..+..        .                    .-++++.+.+ ++.
T Consensus       206 l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~  284 (477)
T PF05935_consen  206 LASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDS  284 (477)
T ss_dssp             EEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTE
T ss_pred             EEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCe
Confidence            7661             11355566 66666555441        0                    1247888888 556


Q ss_pred             EEEEecC-CeEEEEeCC
Q psy6446         118 TITVTHG-SCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~~~-~~i~i~d~~  133 (134)
                      +++++.. ..|...|.+
T Consensus       285 iivSsR~~s~V~~Id~~  301 (477)
T PF05935_consen  285 IIVSSRHQSAVIKIDYR  301 (477)
T ss_dssp             EEEEETTT-EEEEEE-T
T ss_pred             EEEEcCcceEEEEEECC
Confidence            6666754 577777743

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.67  E-value=9.9  Score=25.63  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCC-Ce--EEeCCCCCEeEEEEee----CCCEEEEeeCCCcEEEEecCC--Cc-----
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAE-PT--VYRGHSSGIKHVQFFK----NNTRLISCAEDKTVRLWDVSA--SA-----   96 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~-~~--~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~--~~-----   96 (134)
                      +...|++|+..|.++||+....... ..  ....-..+|.++..-+    .....++.-.-+.+.+|.+..  +.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3468999999999999998653311 11  1123346777777532    233344556667788887732  11     


Q ss_pred             ee---EEEec--CCCCeEEEEcc----CC-cEEEE-ecCCeEEEEeCC
Q psy6446          97 EV---QKLEF--GAVPNSLEISR----DG-TTITV-THGSCVTFLDAN  133 (134)
Q Consensus        97 ~~---~~~~~--~~~v~~~~~~~----~~-~~l~~-~~~~~i~i~d~~  133 (134)
                      ..   ..+.|  ......++.-|    .+ .++++ +.||.+.+|+-+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe  163 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE  163 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence            11   11112  23334444444    22 34444 679999999854

>PHA02790 Kelch-like protein; Provisional

Probab=84.58  E-value=11  Score=25.87  Aligned_cols=66  Identities=6%  Similarity=-0.106  Sum_probs=32.6

Q ss_pred             cCCcEEEEecCC--CeEEEEECCCCCCCCeEEeCCCCCEeE-EEEeeCCCEEEEeeCCC---cEEEEecCCCce
Q psy6446          30 TDSYRLATGSND--KNIRIYDLNKPDAEPTVYRGHSSGIKH-VQFFKNNTRLISCAEDK---TVRLWDVSASAE   97 (134)
Q Consensus        30 ~~~~~l~~~~~d--~~v~i~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~   97 (134)
                      -++...+.|+.+  ..+..||..+..-  .....-..+... ....-+++..+.|+.++   .+..||..+.+.
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAW--VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeE--EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            356677777754  3567787654321  111111111111 11223666667776543   467788766543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=83.81  E-value=4.2  Score=20.64  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             CCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         105 AVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ...+.+.++|+++++..+  ..+.|++|..+
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            456789999999888765  46899999865

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=83.53  E-value=9.2  Score=24.38  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=37.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCC-ceeEEEecCCCCeEEEEccCCcEEEEecC--CeEEEEeC
Q psy6446          75 NTRLISCAEDKTVRLWDVSAS-AEVQKLEFGAVPNSLEISRDGTTITVTHG--SCVTFLDA  132 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~i~i~d~  132 (134)
                      +++++.|.++|. .+.+.... .....+.....|.++...+.-..+++=.+  ..++.+++
T Consensus        13 ~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L   72 (302)
T smart00036       13 GKWLLVGTEEGL-YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL   72 (302)
T ss_pred             CcEEEEEeCCce-EEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence            358888888885 44445432 23344445668889998887776665333  45999887

Unpublished observations.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.36  E-value=9.7  Score=24.55  Aligned_cols=108  Identities=12%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCC------CCCCCeEEeC-----CCCCEeEEEEeeCCC------------EEEEe
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNK------PDAEPTVYRG-----HSSGIKHVQFFKNNT------------RLISC   81 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~------~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~~   81 (134)
                      -++++|.+.+-++....+...+||...      ...+......     .....+.+.|+....            .++.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            388899887777777778899999862      1111111221     123566666664322            25678


Q ss_pred             eCCCcEEEEecCCCce-----eEEEec--CCCC-eEEEEccC--CcEEEEe--cCCeEEEEeC
Q psy6446          82 AEDKTVRLWDVSASAE-----VQKLEF--GAVP-NSLEISRD--GTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~-----~~~~~~--~~~v-~~~~~~~~--~~~l~~~--~~~~i~i~d~  132 (134)
                      ++||+|.-|...-+..     ...+..  ...+ ..+++...  +.+|.+.  .+++|-+||-
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            8999999998543222     112221  1223 45666544  4666655  5799999884

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.09  E-value=15  Score=26.64  Aligned_cols=70  Identities=16%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             eeeEEEc--cCCcEEEEecCCCeEEEEECCCCC-C-CCeEEeCCCCCEeEEEEeeCC---C---EEEEeeCCCcEEEEec
Q psy6446          23 KSSVHFA--TDSYRLATGSNDKNIRIYDLNKPD-A-EPTVYRGHSSGIKHVQFFKNN---T---RLISCAEDKTVRLWDV   92 (134)
Q Consensus        23 ~~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~~~d~   92 (134)
                      ...++++  ...++||++++...|.+|-+.... + ....-..+...|.+++|.++.   .   ++++++-.|.+.+|++
T Consensus       166 aWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  166 AWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            3347777  778889999998888887765521 1 111112356678899998743   2   6777888999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.59  E-value=16  Score=25.75  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=58.9

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC-CceeEEEe-
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA-SAEVQKLE-  102 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~-  102 (134)
                      +.+.++++..++....++.+.++.....  .....  .......-.|.+++ ++.+.......++..... +... ... 
T Consensus       338 s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v~v  411 (557)
T PRK13615        338 AATLSADGRQAAVRNASGVWSVGDGDRD--AVLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PVAV  411 (557)
T ss_pred             cceEcCCCceEEEEcCCceEEEecCCCc--ceeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Eeec
Confidence            4788899999888877777777765521  11111  12346777787777 666655433444444322 3332 222 


Q ss_pred             ---cCCCCeEEEEccCCcEEEE-e---cCCeEEE
Q psy6446         103 ---FGAVPNSLEISRDGTTITV-T---HGSCVTF  129 (134)
Q Consensus       103 ---~~~~v~~~~~~~~~~~l~~-~---~~~~i~i  129 (134)
                         .+..|..+..|+||..++. .   ..++|.+
T Consensus       412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~v  445 (557)
T PRK13615        412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLV  445 (557)
T ss_pred             cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEE
Confidence               2457999999999966553 2   2356655

>PRK10115 protease 2; Provisional

Probab=81.52  E-value=18  Score=26.22  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             eeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEEecCC------CeEEEEECCCCCC-CCeEEeCCCCCEe-EEEEe
Q psy6446           2 GTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLATGSND------KNIRIYDLNKPDA-EPTVYRGHSSGIK-HVQFF   72 (134)
Q Consensus         2 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~-~~~~~~~~~~~v~-~~~~~   72 (134)
                      |++.|+.+|+.+.. +...  ... +.|.+|++.|+....+      ..++.+++.++.. ....+.+...... ....+
T Consensus       155 l~v~d~~tg~~l~~~i~~~--~~~-~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s  231 (686)
T PRK10115        155 IRFRNLETGNWYPELLDNV--EPS-FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT  231 (686)
T ss_pred             EEEEECCCCCCCCccccCc--ceE-EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Confidence            56777777764322 2121  134 9999998877665432      3678888887632 2223443333333 22233


Q ss_pred             eCCCEEEEeeC---CCcEEEEec
Q psy6446          73 KNNTRLISCAE---DKTVRLWDV   92 (134)
Q Consensus        73 ~~~~~l~~~~~---d~~i~~~d~   92 (134)
                      .++++++..+.   ++.+.+++.
T Consensus       232 ~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        232 TSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCEEEEEEECCccccEEEEEC
Confidence            37777664333   356888884

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=80.52  E-value=13  Score=24.10  Aligned_cols=47  Identities=11%  Similarity=-0.005  Sum_probs=34.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  122 (134)
                      +++..++-+..|.+.-+|..+|+.......++...++.|.  |.++++|
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVG  258 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEE
Confidence            4556666666778888887777766666677888899998  7777665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.48  E-value=12  Score=23.84  Aligned_cols=39  Identities=23%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      .++++...++|.+|++...-..|.+.|-++++.+..+..
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG  183 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGG  183 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCC
Confidence            367888888899999998888999999999988887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-07
2h9l_A	329	Wdr5delta23 Length = 329		3e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		5e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
           +WD+ +G+ +H++       +  HF   S    LATGSND  ++++DLN+ +   T++ G
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-G 741
Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE 97
           H++ + H +F  ++  L SC+ D T+RLWDV ++ E
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRG 61
           +WD+ +G+ +H++       +  HF   S    LATGSND  ++++DLN+ +   T++ G
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-G 748
Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE 97
           H++ + H +F  ++  L SC+ D T+RLWDV ++ E
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           SV F+ D   LATG+ D+ IRI+D+        + +GH   I  + +F +  +L+S + D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 85  KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHG 124
           +TVR+WD         L  G    +L I    TT+ V+ G
Sbjct: 187 RTVRIWD---------LRTGQCSLTLSIEDGVTTVAVSPG 217

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 52  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 52  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 52  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 48  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 106
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 107 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 163

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 55  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 49  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 107
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 52  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 50  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 108
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 165

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 55  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 66  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 124
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 125 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 181

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 54  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 112
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 169

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 52  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 110
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 55  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 113
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 49  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 107
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 45  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 103
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 71  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 129
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W A  G+   +     +  S V +++DS  L + S+DK ++I+D++      T+ +GHS
Sbjct: 73  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS 131
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDGTTI 119
           + +    F   +  ++S + D++VR+WDV     ++ L   + P +++  +RDG+ I
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 188

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWD  SG+ + +F+      +SV +       A+GS+D   R+YDL + D E  +Y   S
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKES 282
Query: 64  S--GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTI 119
              G   V F  +   L +   D T+ +WDV   + V  L FG     ++L +S DGT  
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAF 341

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 26  VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRLISCAED 84
           V ++ D+ RLATGS D ++ ++++NKP   P + +G H+    +   + N T ++S  +D
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 601
Query: 85  KTVRLWDV 92
             ++ W+V
Sbjct: 602 SNIKFWNV 609

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 4   VWDAVSGEELHSFQ------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT 57
           +WD  +G+ +  F       H   V S    + ++    +GS D  +R++DL        
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243
Query: 58  VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
            Y GH   I  V+FF +  R  + ++D T RL+D+    ++Q
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 26  VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
           V F+ D   +A+ S+DK +++++ N    +     GHSS ++ V F  +   + S ++DK
Sbjct: 63  VAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 86  TVRLWD 91
           TV+LW+
Sbjct: 121 TVKLWN 126

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           +WD    E + +   H H V SSV    +   + + S DK I+++++       T + GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNV-SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGH 233
Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
              ++ V+  ++ T + SC+ D+TVR+W V+
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSSGIKHVQFFKN 74
           H + VK  V ++ D Y LAT S DK++ I++ ++   E    +V + HS  +KHV +  +
Sbjct: 106 HENEVKG-VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 75  NTRLISCAEDKTVRLW 90
              L S + D TVR+W
Sbjct: 165 EALLASSSYDDTVRIW 180

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 24  SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
           S +    D   + TGS+D  +R++D+N  +   T+   H   + H++F  NN  +++C++
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCSK 231
Query: 84  DKTVRLWDVSASAEV 98
           D+++ +WD+++  ++
Sbjct: 232 DRSIAVWDMASPTDI 246

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD  +G     F        SV F++D+ ++ +GS DK I++++             HS
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 64  SGIKHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGT 117
             +  V+F  N  N  ++SC  DK V++W++ A+ +++    G     N++ +S DG+
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGS 228

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD  +G     F        SV F++D+ ++ +GS DK I++++             HS
Sbjct: 89  LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 64  SGIKHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGT 117
             +  V+F  N  N  ++SC  DK V++W++ A+ +++    G     N++ +S DG+
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGS 205

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           ++D  +G+ LH+ +   +   S+ F+ DS  L T S+D  I+IYD+   +   T+  GH+
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHA 248
Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
           S + +V F  ++T  +S + DK+V++WDV
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 4   VWDAVSGEEL-----HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV 58
           +W+ +  E L       ++H  IVK+   F +D  +  +G  D +++++DL++  A    
Sbjct: 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQ-KAVLKS 176
Query: 59  YRGHSSGIKHVQFFKN-NTRLISCAEDKTVRLWDVSASAEVQKLEFGA---VPNSL 110
           Y  HSS +  V      +T  +SC ED  + LWD        +++F A   +P S+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV 232

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 55  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 55  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 55  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 49  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 106
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 107 VDIDKKASMIISGSRDKTIKVWTI 130

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 55  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMS 112
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTI 136

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 10  GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
           G  + SF+ H HIV+     A  +Y L + S DK +R++D+   +     + GH S +  
Sbjct: 55  GVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVXS 112
Query: 69  VQFFKNNTRLISCAEDKTVRLWDV 92
           V   K  + +IS + DKT+++W +
Sbjct: 113 VDIDKKASXIISGSRDKTIKVWTI 136

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
           H H V        D    A+G  D+ ++++ L +     T+  G   G+ +V ++   + 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76  TRLISCAEDKTVRLWDVSASAEVQKLE 102
             +I+ ++D T+++WD    + V  LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
           H H V        D    A+G  D+ ++++ L +     T+  G   G+ +V ++   + 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76  TRLISCAEDKTVRLWDVSASAEVQKLE 102
             +I+ ++D T+++WD    + V  LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
           H H V        D    A+G  D+ ++++ L +     T+  G   G+ +V ++   + 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76  TRLISCAEDKTVRLWDVSASAEVQKLE 102
             +I+ ++D T+++WD    + V  LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF--KNN 75
           H H V        D    A+G  D+ ++++ L +     T+  G   G+ +V ++   + 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 76  TRLISCAEDKTVRLWDVSASAEVQKLE 102
             +I+ ++D T+++WD    + V  LE
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 1   MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR 60
           M  VWD  +   LH+ Q       S+ F  D   + +GS D +IR++D+   +   T+  
Sbjct: 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT- 316
Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
           GH S    ++  K+N  L+S   D TV++WD+     +Q L+
Sbjct: 317 GHQSLTSGMEL-KDNI-LVSGNADSTVKIWDIKTGQCLQTLQ 356

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           S+  A D+    +G+ D + +++D+ +     T + GH S I  + FF N     + ++D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 258
Query: 85  KTVRLWDVSASAEVQ 99
            T RL+D+ A  E+ 
Sbjct: 259 ATCRLFDLRADQELM 273

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           S+  A D+    +G+ D + +++D+ +     T + GH S I  + FF N     + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85  KTVRLWDVSASAEVQ 99
            T RL+D+ A  E+ 
Sbjct: 248 ATCRLFDLRADQELM 262

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           S+  A D+    +G+ D + +++D+ +     T + GH S I  + FF N     + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85  KTVRLWDVSASAEVQ 99
            T RL+D+ A  E+ 
Sbjct: 248 ATCRLFDLRADQELM 262

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           S+  A D+    +G+ D + +++D+ +     T + GH S I  + FF N     + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85  KTVRLWDVSASAEVQ 99
            T RL+D+ A  E+ 
Sbjct: 248 ATCRLFDLRADQELM 262

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           S+  A D+    +G+ D + +++D+ +     T + GH S I  + FF N     + ++D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDD 247
Query: 85  KTVRLWDVSASAEVQ 99
            T RL+D+ A  E+ 
Sbjct: 248 ATCRLFDLRADQELM 262

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33  YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
           + LATGS DK + ++DL     +   +  H   I  VQ+  +N T L S   D+ + +WD
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 92  VSASAEVQKLE 102
           +S   E Q  E
Sbjct: 351 LSKIGEEQSTE 361

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33  YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
           + LATGS DK + ++DL     +   +  H   I  VQ+  +N T L S   D+ + +WD
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 92  VSASAEVQKLE 102
           +S   E Q  E
Sbjct: 353 LSKIGEEQSTE 363

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33  YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
           + LATGS DK + ++DL     +   +  H   I  VQ+  +N T L S   D+ + +WD
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 92  VSASAEVQKLE 102
           +S   E Q  E
Sbjct: 355 LSKIGEEQSTE 365

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 18  HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
           H H V+  V  ++D     +GS D  +R++DL         + GH+  +  V F  +N +
Sbjct: 429 HSHFVEDVV-LSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 78  LISCAEDKTVRLWD 91
           ++S + D+T++LW+
Sbjct: 487 IVSASRDRTIKLWN 500

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33  YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRLWD 91
           + LATGS DK + ++DL     +   +  H   I  VQ+  +N T L S   D+ + +WD
Sbjct: 287 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Query: 92  VSASAEVQKLE 102
           +S   E Q  E
Sbjct: 347 LSKIGEEQSPE 357

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 27  HFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
           H A  D     + SND  I++ D +  D   T Y GH S +  ++   N   ++SC ED+
Sbjct: 189 HLAVVDDGHFISCSNDGLIKLVDXHTGDVLRT-YEGHESFVYCIKLLPNGD-IVSCGEDR 246
Query: 86  TVRLW 90
           TVR+W
Sbjct: 247 TVRIW 251

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 35  LATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
           LA+ S D  +++Y   + D        GH S +  + F  +  RL SC++D+TVR+W
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.98
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.76
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.71
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.64
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.58
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.08
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.06
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.02
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.0
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.97
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.95
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.92
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.87
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.73
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.64
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.27
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.18
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.18
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.13
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.1
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.1
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.0
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.0
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.78
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.66
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.46
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.44
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.44
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.35
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.16
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.71
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.5
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.4
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.06
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.71
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.6
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.34
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.17
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.14
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.84
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.81
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.72
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.06
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.98
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.76
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.63
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.55
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.54
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.65
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.83
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.23
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.16
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	90.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.84
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	89.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.65
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.54
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	87.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	85.52
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.08
3ott_A	758	Two-component system sensor histidine kinase; beta	82.78
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.36

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.98  E-value=3.9e-30  Score=157.44  Aligned_cols=132  Identities=25%  Similarity=0.442  Sum_probs=118.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..++.+...+.+++|+|++++|++++.|+.|++||+++... ...+.+|...|.+++|+|++++|++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCCEEEE
Confidence            489999999999999986555566699999999999999999999999987654 4567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+.+++++..+. +...|.+++|+|++.+|+++ .|+.|++||..
T Consensus       266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999888875 67889999999999988875 78999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=2e-29  Score=155.23  Aligned_cols=133  Identities=22%  Similarity=0.374  Sum_probs=117.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+.++...+.+++|+|+++++++|+.|+.|++||++++.. ...+.+|...|.+++|+|+++.+++
T Consensus       165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s  243 (340)
T 1got_B          165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEE
Confidence            589999999999999986555666699999999999999999999999988654 4567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+.+.   ..+.+++|+|++++++++ .|+.|++||+.+
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            999999999999998888777654   368999999999999886 689999999753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=2.8e-29  Score=152.56  Aligned_cols=132  Identities=18%  Similarity=0.294  Sum_probs=114.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+..+...+.++.|+|++++|++|+.|+.|++||+.++.. ...+.+|...|.+++|+|+++++++
T Consensus        36 ~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s  114 (304)
T 2ynn_A           36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLS  114 (304)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-EEEEeCCCCcEEEEEEcCCCCEEEE
Confidence            489999999999999986666666699999999999999999999999998664 4567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCcee-EEEe-cCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEV-QKLE-FGAVPNSLEISR-DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||++++... ..+. +...|.+++|+| ++..++++ .|+.|++||++
T Consensus       115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (304)
T ss_dssp             EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred             ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999887544 3343 577899999999 56777765 78999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.6e-29  Score=153.81  Aligned_cols=133  Identities=19%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++....+..+...+.+++|+|++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++++|++
T Consensus       145 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCEEEE
Confidence            378999999999888886666666699999999999999999999999988654 4567889999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+. +...|.+++|+|++.+++++ .|+.|++||+++
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            9999999999999988887776 57789999999999988875 789999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=5.1e-29  Score=153.83  Aligned_cols=133  Identities=15%  Similarity=0.132  Sum_probs=110.5

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-C
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-T   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~   76 (134)
                      +|++||++++++...+.  .+...+.+++|+| ++++|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++ +
T Consensus       193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSC
T ss_pred             ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCe
Confidence            58999999999988775  3344455699999 567889999999999999998665 46789999999999999987 5


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEEE-ecCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TITV-THGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~~~~i~i~d~~t  134 (134)
                      +|++++.|+.|++||+.+++......|...|.+++|+|++. ++++ +.|++|++|++.+
T Consensus       272 ~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            78999999999999999988777666888999999999986 4555 4699999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=7.9e-29  Score=150.60  Aligned_cols=134  Identities=17%  Similarity=0.241  Sum_probs=115.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      +|++||+.+++++..++.+...+.+++|+|++++|++|+.|+.|++||++++......+.+|...|.+++|+| ++..++
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            4899999999999999966666666999999999999999999999999876555567889999999999999 678999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEcc--CCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISR--DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.|+.|++||++++.....+.  +...+..+.|+|  ++.+++++ .|+.|++||+++
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            99999999999998887766665  346788899987  66788765 789999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=5.3e-29  Score=156.76  Aligned_cols=133  Identities=20%  Similarity=0.354  Sum_probs=118.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..++++...+.+++|+|++++|++|+.|+.|++||+.+... ...+.+|...|.+++|+|+++++++
T Consensus       131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-EECCCCCSSCEEEEEECSSSSEEEE
T ss_pred             eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            589999999999999996666666699999999999999999999999987553 3457889999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||++++.+...+. +...+.++.++|++.+++++ .|+.|++||+++
T Consensus       210 ~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999999999999888776 56789999999999998876 689999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.4e-28  Score=152.83  Aligned_cols=131  Identities=13%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-------------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-------------------------   55 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------------   55 (134)
                      +|+|||+.+++++..+++...+.. ++|+|+|+++++++.++ +.+|+..++...                         
T Consensus       158 ~i~iwd~~~~~~~~~~~~~~~V~~-v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIETRGEVKD-LHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCE-EEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred             EEEEeECCCCcEEEEeCCCCceEE-EEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence            489999999999999987777666 99999999999998665 555554322110                         


Q ss_pred             --------------------------CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--cCCCC
Q psy6446          56 --------------------------PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVP  107 (134)
Q Consensus        56 --------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v  107 (134)
                                                ...+.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+.  |...|
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred             EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence                                      00134567789999999999999999999999999999999988764  68899


Q ss_pred             eEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         108 NSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       108 ~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .+++|+|||++|+++ .|++|+|||+.
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            999999999999976 68999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=2.9e-28  Score=152.06  Aligned_cols=133  Identities=22%  Similarity=0.390  Sum_probs=114.2

Q ss_pred             CeeEeecCCCceeeEE-----eeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGEELHSF-----QHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      +|++||+.+++.+..+     .++...+.++.|++ +++.|++|+.|+.|++||++........+.+|.+.|.+++|+|+
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~  260 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD  260 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence            5899999999998877     33334445599987 88999999999999999998655566788999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecC--------CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFG--------AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++|++++.|+.|++||+++++.+..+...        ..+.+++|+|+|++++++ .||.|++||+.
T Consensus       261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            999999999999999999999888777532        237899999999999987 68999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2e-28  Score=151.16  Aligned_cols=133  Identities=22%  Similarity=0.392  Sum_probs=110.7

Q ss_pred             CeeEeecCCCceeeEEe----eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQ----HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|+|||+.+++.+..++    ++...+.+++|+|++++|++|+.|+.|++||+.++.. ...+.+|...|.+++|+|++.
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSCT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEEecCCCC
Confidence            48999999988655443    4555666699999999999999999999999998654 467889999999999999875


Q ss_pred             -EEEEeeCCCcEEEEecCCCceeEEEe---cCCCCeEEEEccCC-cEEEEe-cCCeEEEEeCCC
Q psy6446          77 -RLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDG-TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 -~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~~t  134 (134)
                       .+++++.|+.|++||+++++....+.   +...+.+++|+|++ .+++++ .|+.|++||+++
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence             67899999999999999998887764   34568899999965 677765 689999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=9.8e-29  Score=153.17  Aligned_cols=132  Identities=19%  Similarity=0.249  Sum_probs=113.3

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC-C
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN-T   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~   76 (134)
                      +|++||+++++++..+.  .....+.+++|+|+ +.+|++|+.|+.|++||++++.. ...+.+|...|.+++|+|++ +
T Consensus       205 ~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          205 RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSC
T ss_pred             ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCC
Confidence            58999999998877665  33445566999996 56888999999999999998654 46788999999999999987 5


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|++++.|+.|++||+++++.+..+.|...|.+++|+| ++.+|+++ .|+.|++||+.
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            78999999999999999999888888899999999998 78888765 78999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.1e-27  Score=145.84  Aligned_cols=133  Identities=23%  Similarity=0.407  Sum_probs=118.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||..+++....+..+...+.+++|+|++++|++++.|+.|++||+.++.. ...+.+|...|.+++|+|+++++++
T Consensus        46 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s  124 (312)
T 4ery_A           46 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS  124 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            489999999999988886666666699999999999999999999999998654 4567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+. +..++.+++|+|++.+++++ .|+.|++||+++
T Consensus       125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999888776 56789999999999988875 689999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=3.1e-28  Score=153.24  Aligned_cols=132  Identities=22%  Similarity=0.386  Sum_probs=116.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccC--------------------CcEEEEecCCCeEEEEECCCCCCCCeEEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATD--------------------SYRLATGSNDKNIRIYDLNKPDAEPTVYR   60 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~   60 (134)
                      +|++||+.++++...+..+...+.++.|+|+                    +.+|++|+.|+.|++||++++.. ...+.
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~  335 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLV  335 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEE
Confidence            5899999999999999866667777999996                    66899999999999999998654 35678


Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|...|.+++|+|++++|++++.|+.|++||+.++++...+. |...|.+++|+|++.+++++ .|+.|++||++
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999999999999998888876 67889999999999988875 78999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=4.1e-28  Score=159.09  Aligned_cols=133  Identities=18%  Similarity=0.292  Sum_probs=113.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE-e------CCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY-R------GHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~------~~~~~v~~~~~~~   73 (134)
                      +|++||..+++++..+.++...+.+++|+|++++|++++.|+.|++||+.++... ..+ .      +|.+.|.+++|+|
T Consensus       171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~-~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECT
T ss_pred             eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe-eeeccccccccccCCCEEEEEECC
Confidence            5899999999999899866666666999999999999999999999999876543 233 2      7999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEe--------------------------------------------cCCCCeE
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLE--------------------------------------------FGAVPNS  109 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------------------------------~~~~v~~  109 (134)
                      ++++|++++.|++|++||+.++++...+.                                            |...|.+
T Consensus       250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~  329 (611)
T 1nr0_A          250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA  329 (611)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence            99999999999999999998876654332                                            4567899


Q ss_pred             EEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446         110 LEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       110 ~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++|+|++++++++ .|+.|++||+++
T Consensus       330 l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          330 LSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999876 689999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=4.3e-28  Score=149.33  Aligned_cols=130  Identities=22%  Similarity=0.372  Sum_probs=111.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++++..+..+...+.+++|+|+++.|++++.|+.|++||+++.... ..+.  .+...|.+++|+|+++++
T Consensus       207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEE
Confidence            5899999999999999866666666999999999999999999999999875433 2222  233479999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++++.|+.|++||+.+++....+. |...|.+++|+|++.+|+++ .|+.|++||
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999988887776 67899999999999988875 689999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=1.3e-27  Score=148.03  Aligned_cols=132  Identities=21%  Similarity=0.357  Sum_probs=114.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++++..+.++...+.++.|+|  +++.|++|+.|+.|++||++++.. ...+.+|...|.+++|+|+++.+
T Consensus       177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAF  255 (354)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEE
Confidence            489999999999999986666666699987  578999999999999999998654 45678999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++.|+.|++||++.++....+...   ..+.+++|+|++.+++++ .|+.|++||+.
T Consensus       256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            99999999999999988877666533   357899999999999886 68999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=2.4e-27  Score=144.97  Aligned_cols=132  Identities=22%  Similarity=0.363  Sum_probs=114.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN------   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~------   74 (134)
                      +|++||+.+++++..+.++...+.+++|+|+++.|++++.|+.|++||++..  ....+.+|...+.++.++|.      
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCC
Confidence            4899999999999999866666666999999999999999999999999752  34567889999999999985      


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +..+++++.|+.|++||+++.+....+. +...|.+++|+|++++++++ .|+.|++||+++
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            4489999999999999999988777665 67889999999999999876 689999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=3.2e-27  Score=143.69  Aligned_cols=133  Identities=20%  Similarity=0.352  Sum_probs=116.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+..+...+.++.|+|++++|++++.|+.|++||++++.. ...+..|...|.+++|+|+++.+++
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEE
Confidence            478999999999999986666666699999999999999999999999988654 3567889999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+.  +...+..++|+|++++++++ .|+.|++||+++
T Consensus       167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999999999998877764  34578899999999988876 689999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=8.9e-28  Score=149.86  Aligned_cols=132  Identities=20%  Similarity=0.309  Sum_probs=110.6

Q ss_pred             CeeEeecC-CCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-------CCCEeEEEEe
Q psy6446           1 MGTVWDAV-SGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-------SSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------~~~v~~~~~~   72 (134)
                      +|++||++ .++.+..+.++...+.+++|+|+++.|++++.|+.|++||++++... ..+..+       ...+.+++|+
T Consensus       229 ~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEEC
T ss_pred             eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEEC
Confidence            58999997 55777888855555666999999999999999999999999986533 233322       2358999999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEe-----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+++++++++.|+.|++||+..++....+.     |...|.+++|+|+|.+|+++ .|+.|++|++.
T Consensus       308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            999999999999999999999988877763     56789999999999999986 68999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=2.9e-27  Score=148.09  Aligned_cols=133  Identities=26%  Similarity=0.450  Sum_probs=115.5

Q ss_pred             CeeEeecCCCceeeEEeeCC------------------CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPH------------------IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH   62 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~   62 (134)
                      ++++|++.+++.+..+..+.                  ..+.+++|+|++++|++|+.|+.|++||+.++.. ...+.+|
T Consensus        86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h  164 (393)
T 1erj_A           86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-VMILQGH  164 (393)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred             cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEccC
Confidence            47899999999888775322                  1256699999999999999999999999987553 4567899


Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCCC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ...|.+++|+|+++.|++++.|+.|++||++++++...+.+...+.+++|+| ++.+++++ .|+.|++||+++
T Consensus       165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            9999999999999999999999999999999999988888888899999999 88888876 689999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=3e-27  Score=146.36  Aligned_cols=130  Identities=25%  Similarity=0.384  Sum_probs=111.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC--CCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG--HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+++++++..+..+...+.+++|+|+++.|++++.|+.|++||++..... ..+..  +...+.+++|+|+++++
T Consensus       221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEE
Confidence            5899999999999999865666666999999999999999999999999875432 23332  23478999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|+++ .|+.|++|+
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999998887765 67899999999999988876 689999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.5e-27  Score=144.84  Aligned_cols=133  Identities=16%  Similarity=0.234  Sum_probs=101.8

Q ss_pred             CeeEeecCCC--ceeeEEe-e-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEEE
Q psy6446           1 MGTVWDAVSG--EELHSFQ-H-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~~   70 (134)
                      +|++||+.++  +.+..+. . +...+.+++|+|++++|++++.|+.|++|++....      .....+.+|...|.+++
T Consensus        35 ~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  114 (330)
T 2hes_X           35 KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA  114 (330)
T ss_dssp             CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred             EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence            5899999875  3455552 2 45556669999999999999999999999986421      12345678999999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCC----ceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSAS----AEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+|++++|++++.|+.|++||++..    +++..+. +...|.+++|+|++.+|+++ .|+.|++||.+
T Consensus       115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999999999999532    3344444 57889999999999998876 68999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=3.5e-27  Score=145.59  Aligned_cols=133  Identities=18%  Similarity=0.270  Sum_probs=108.6

Q ss_pred             CeeEeecCCCceeeE--E-eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHS--F-QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|+|||+.+++....  + .++...+.+++|+|++++|++++.|+.+++|++.... .....+.+|...|.+++|+|+++
T Consensus        39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  118 (345)
T 3fm0_A           39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN  118 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC
Confidence            589999988765432  2 3455556669999999999999999999999987653 23456789999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCcee---EEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEV---QKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|++++.|+.|++||+.++...   ..+. +...+.+++|+|++.+++++ .|+.|++||.+
T Consensus       119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~  180 (345)
T 3fm0_A          119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE  180 (345)
T ss_dssp             EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE
T ss_pred             EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec
Confidence            9999999999999999876533   3332 56789999999999988875 68999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.7e-27  Score=144.24  Aligned_cols=133  Identities=23%  Similarity=0.290  Sum_probs=105.1

Q ss_pred             CeeEeecCC-------CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC---CCeEEeCCCCCEeEEE
Q psy6446           1 MGTVWDAVS-------GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA---EPTVYRGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~~v~~~~   70 (134)
                      +|++||+..       .+++..+.++...+.+++|+|++++|++++.|+.|++||++....   ....+.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            589999853       345667775555666699999999999999999999999954322   2345678999999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCC--ceeEEEe-cCCCCeEEEEccC--CcEEEEe-cCCeEEEEeCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSAS--AEVQKLE-FGAVPNSLEISRD--GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~l~~~-~~~~i~i~d~~  133 (134)
                      |+|++++|++++.|+.|++||..++  +++..+. |...|.+++|+|+  +..++++ .|+.|++||++
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            9999999999999999999998776  4555554 6788999999998  5677765 78999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=3.2e-27  Score=148.38  Aligned_cols=133  Identities=17%  Similarity=0.249  Sum_probs=113.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++....+..+...+.+++|+|++++|++++.|+.|++||+.++... ..+.+|...|.+++|+|+++.|++
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s  198 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAIIDRGRNVLS  198 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSSCEEEEEEETTTTEEEE
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCCcEEEEEEcCCCCEEEE
Confidence            4899999999888887655556666999999999999999999999999986654 567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEec-------------------------CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF-------------------------GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+..                         ...+.+++|+|++++++++ .||.|++||+++
T Consensus       199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred             EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            99999999999999988887752                         2445566678899888876 689999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.1e-26  Score=142.63  Aligned_cols=132  Identities=18%  Similarity=0.298  Sum_probs=108.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCC-----------------------------------cEEEE--ecCCCe
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDS-----------------------------------YRLAT--GSNDKN   43 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~--~~~d~~   43 (134)
                      +|++||..+++++..+.+...+.. +.|+++.                                   ..+++  |+.+|.
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~~v~~-v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIKVDAPVKD-LFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEE-EEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             EEEEEECCCCcEEEEEECCCceEE-EEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            478999999988888876655444 7776542                                   23443  678899


Q ss_pred             EEEEECCCCCC--------------C-CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc-EEEEecCCCceeEEEe---cC
Q psy6446          44 IRIYDLNKPDA--------------E-PTVYRGHSSGIKHVQFFKNNTRLISCAEDKT-VRLWDVSASAEVQKLE---FG  104 (134)
Q Consensus        44 v~i~~~~~~~~--------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~---~~  104 (134)
                      |++||+.++..              + ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++++++..+.   +.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            99999987541              1 4678899999999999999999999999998 9999999999999987   77


Q ss_pred             CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         105 AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..|.+++|+|++++++++ .|+.|++||++
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            899999999999999876 68999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.3e-26  Score=143.06  Aligned_cols=132  Identities=22%  Similarity=0.325  Sum_probs=110.2

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC--CeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE--PTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||..++.  ++..+.++...+.+++|+|++++|++++.|+.|++||+++....  ...+.+|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            57899988764  56677766666666999999999999999999999999875432  345678999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCcee--EEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEV--QKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      +|++++.|+.|++||..+++..  ..+. +...|.+++|+|++++|+++ .|+.|++||.
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            9999999999999999877543  3333 57889999999999998876 7899999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=1.8e-26  Score=144.53  Aligned_cols=131  Identities=20%  Similarity=0.357  Sum_probs=112.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      +|++||+.+++.+..+.++...+.+++|+|+++.|++++.|+.|++||++++... ..+ .+...+..++|+| ++++++
T Consensus       146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-LTL-SIEDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE-ECSSCEEEEEECSTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-EEE-EcCCCcEEEEEECCCCCEEE
Confidence            5899999999999999866666666999999999999999999999999886543 233 3667899999999 899999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe--------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE--------FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.|+.|++||+++++....+.        +...|.+++|+|++++++++ .|+.|++||++
T Consensus       224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            99999999999999988777662        46789999999999998876 68999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=2.9e-26  Score=141.32  Aligned_cols=130  Identities=17%  Similarity=0.255  Sum_probs=107.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE---eCCCCCEeEEEEeeCC--
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY---RGHSSGIKHVQFFKNN--   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~--   75 (134)
                      +|++||+.+++.+..+.++...+.+++|+|+++.|++++.|+.|++||+.... . ...   .+|...|.+++|+|++  
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-K-FSSAEKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-E-EECCTTTSCSSCEEEEEECCCCCS
T ss_pred             cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-e-eeeecccCCCceeeeeeecccccc
Confidence            48999999999999998665666669999999999999999999999987421 1 111   2688899999999986  


Q ss_pred             --------CEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          76 --------TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        76 --------~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                              .++++++.|+.|++||. ..+....+. +...|.+++|+|++++|+++ .|+.|++||++
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence                    78999999999999994 444444444 67889999999999999876 68999999983

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2e-26  Score=144.48  Aligned_cols=134  Identities=18%  Similarity=0.263  Sum_probs=113.2

Q ss_pred             CeeEeecCCCc----eeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCC------CCCeEEeCCCCCEeEE
Q psy6446           1 MGTVWDAVSGE----ELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPD------AEPTVYRGHSSGIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~v~~~   69 (134)
                      +|+|||+.+..    .+..+.++...+.+++|+| ++++|++++.||.|++|++.++.      .....+.+|...|.++
T Consensus        58 ~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~  137 (402)
T 2aq5_A           58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV  137 (402)
T ss_dssp             CEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred             EEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence            47899986542    3444555556666699999 99999999999999999998863      3456788999999999


Q ss_pred             EEeeCC-CEEEEeeCCCcEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          70 QFFKNN-TRLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        70 ~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +|+|++ +.+++++.|+.|++||+.+++....+.   +...+.+++|+|++.+++++ .|+.|++||+++
T Consensus       138 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             EECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             EECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            999997 699999999999999999999988883   67889999999999888875 789999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=4.1e-26  Score=138.25  Aligned_cols=133  Identities=14%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeC-
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKN-   74 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-   74 (134)
                      +|++||+.+++  .+..+..+...+.+++|+|+  +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+ 
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            48999998874  45566645555666999997  88999999999999999987532 23567899999999999996 


Q ss_pred             ------------CCEEEEeeCCCcEEEEecCCCc----eeEEEe-cCCCCeEEEEccCC---cEEEEe-cCCeEEEEeCC
Q psy6446          75 ------------NTRLISCAEDKTVRLWDVSASA----EVQKLE-FGAVPNSLEISRDG---TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 ------------~~~l~~~~~d~~i~~~d~~~~~----~~~~~~-~~~~v~~~~~~~~~---~~l~~~-~~~~i~i~d~~  133 (134)
                                  ++.|++++.|+.|++||+++++    ....+. |...|.+++|+|++   .+++++ .|+.|++||++
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                        5789999999999999998765    333443 67889999999985   677765 68999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-26  Score=142.94  Aligned_cols=130  Identities=11%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             EeecCCCceeeEEe-eCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCCCeEE-eCCCCCEeEEEEeeCCCEEE
Q psy6446           4 VWDAVSGEELHSFQ-HPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTVY-RGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         4 v~d~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +||..+++.+..+. .+...+.+++|+|  +++++++++.||.|++||++++... ... ..+...+.+++|+|++++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~~i~~~~~~pdg~~la  186 (343)
T 3lrv_A          108 ILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-IVHSAKSDVEYSSGVLHKDSLLLA  186 (343)
T ss_dssp             EEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-EEECCCSSCCCCEEEECTTSCEEE
T ss_pred             EeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEEecCCCCceEEEEECCCCCEEE
Confidence            34555777666665 3334455599999  9999999999999999999986653 333 34556899999999999999


Q ss_pred             EeeCCCcEEEEecCCCcee-EEEe--cCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEV-QKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      +|+.|+.|++||+++++.. ..+.  |...|.+++|+|++.+++++.++.|++||+++
T Consensus       187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~  244 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK  244 (343)
T ss_dssp             EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred             EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence            9999999999999998877 5554  57899999999999999988777999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-26  Score=142.73  Aligned_cols=132  Identities=18%  Similarity=0.204  Sum_probs=106.6

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++++.... +....+.+++|+|++.+|++|+.||.|++||++++......+.. |.+.|.+++|+|++.+|
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            58999999999877664 44444666999999999999999999999999987765356677 99999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe----cCCCC--eEEEEccCCcEEEEe-c-CCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE----FGAVP--NSLEISRDGTTITVT-H-GSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~----~~~~v--~~~~~~~~~~~l~~~-~-~~~i~i~d~~  133 (134)
                      ++++ ++.|++||+++++....+.    +...+  .+++|+|++++++++ . ++.+++|+++
T Consensus       230 ~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          230 VVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             EEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            9999 4599999999887654332    11223  469999999999984 4 8999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=1.2e-26  Score=152.22  Aligned_cols=130  Identities=17%  Similarity=0.259  Sum_probs=110.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |++||  +++.+..+.++...+.+++|+|++. .|++++.|+.+++||..+.+ ....+.+|...|.+++|+|++++|++
T Consensus       131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~~las  207 (611)
T 1nr0_A          131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCCEEEE
Confidence            44555  5666777776666666799999986 59999999999999987654 34567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEE--------ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKL--------EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+.+++....+        .|...|.+++|+|++++|+++ .|++|++||+++
T Consensus       208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            999999999999999888777        367789999999999998875 789999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1e-25  Score=138.91  Aligned_cols=132  Identities=14%  Similarity=0.273  Sum_probs=107.3

Q ss_pred             CeeEeecCCC-------ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSG-------EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      +|++||+.++       .+...+.++...+.+++|+|++.++++++.|+.|++||++++.. ...+.+|...|.+++|+|
T Consensus        50 ~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp  128 (343)
T 2xzm_R           50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSP  128 (343)
T ss_dssp             CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECS
T ss_pred             EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECC
Confidence            5899999753       35566776666666699999999999999999999999998654 456789999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEE---ecCCCCeEEEEccCC----------cEEEEe-cCCeEEEEeCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDG----------TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~-~~~~i~i~d~~  133 (134)
                      +++++++++.|+.|++||+.........   .+...+.+++|+|++          .+++++ .|+.|++||.+
T Consensus       129 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  202 (343)
T 2xzm_R          129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN  202 (343)
T ss_dssp             STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence            9999999999999999999743322222   245678999999987          567764 78999999953

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.4e-25  Score=137.09  Aligned_cols=131  Identities=20%  Similarity=0.298  Sum_probs=113.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccC------CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATD------SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      +|++||+. ++++..+.++...+.++.|.|.      +..+++++.|+.|++||+++... ...+.+|...|.+++|+|+
T Consensus       130 ~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECTT
T ss_pred             eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcCC
Confidence            58999986 5667777755555666999984      44899999999999999987543 3567899999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +++|++++.|+.|++||+.+++.+..+.....+.+++|+|++.+++++.++.+++|+++
T Consensus       208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~  266 (319)
T 3frx_A          208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD  266 (319)
T ss_dssp             SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence            99999999999999999999999999888889999999999999999888889999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=3.8e-26  Score=141.58  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=112.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCe-EEeCCCCCEeEEEEeeC-CCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFFKN-NTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~   77 (134)
                      +|++||+.+++++..++.+...+.+++|+|++. .+++++.|+.|++||+++++.... ....+...+.+++|+|+ +.+
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence            589999999999999986666666699999774 788999999999999988664432 23456778999999996 567


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCC-cEEEEe-cCCeEEEEeCCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG-TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++++.|+.|++||+++++....+. +...|.+++|+|++ ++|+++ .|+.|++||+++
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             EEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            8899999999999999999888876 56789999999997 567665 689999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=1.9e-25  Score=135.38  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=107.5

Q ss_pred             CeeEeecCC--CceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeC-
Q psy6446           1 MGTVWDAVS--GEELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKN-   74 (134)
Q Consensus         1 ~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-   74 (134)
                      +|++||+.+  ++++..+.++...+.+++|+|  ++++|++++.|+.|++||+.++. .....+.+|...|.+++|+|+ 
T Consensus        32 ~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~  111 (297)
T 2pm7_B           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  111 (297)
T ss_dssp             CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred             EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence            589999974  467788886666666699986  48999999999999999998754 234556789999999999997 


Q ss_pred             -CCEEEEeeCCCcEEEEecCCCce--eEEE-ecCCCCeEEEEccC-------------CcEEEEe-cCCeEEEEeCC
Q psy6446          75 -NTRLISCAEDKTVRLWDVSASAE--VQKL-EFGAVPNSLEISRD-------------GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~-~~~~~v~~~~~~~~-------------~~~l~~~-~~~~i~i~d~~  133 (134)
                       ++.|++++.|+.|++||++++..  ...+ .+...+.+++|+|+             +++|+++ .|+.|++||++
T Consensus       112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~  188 (297)
T 2pm7_B          112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (297)
T ss_dssp             GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc
Confidence             88999999999999999987632  2222 36778999999997             4577765 78999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=5.6e-26  Score=147.60  Aligned_cols=127  Identities=25%  Similarity=0.450  Sum_probs=109.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||. +++.+..+..+...+.+++|+|++++|++++.|+.|++|+... . ....+.+|...|.+++|+|++++|++
T Consensus       449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-~~~~~~~h~~~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-EEEEEeCCCCCEEEEEEcCCCCEEEE
Confidence            4789995 5777888885556666699999999999999999999999643 3 44678899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++.|+.|++||. +++++..+. |...|.+++|+||+++|+++ .|+.|++||
T Consensus       526 ~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          526 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999996 567766665 67899999999999988865 789999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=8.3e-26  Score=141.04  Aligned_cols=133  Identities=17%  Similarity=0.239  Sum_probs=116.2

Q ss_pred             CeeEeecCCCceeeEEee---C---CCceeeEEEccCCcEEEEecCC---CeEEEEECCCCCCCCeEEeC----------
Q psy6446           1 MGTVWDAVSGEELHSFQH---P---HIVKSSVHFATDSYRLATGSND---KNIRIYDLNKPDAEPTVYRG----------   61 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~----------   61 (134)
                      +|++||+.+++++..+..   +   ...+.+++|+|++++|++++.|   +.|++||++++.. ...+.+          
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~  286 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLG  286 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------C
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCccccccccc
Confidence            378999999999998886   5   5666669999999999999999   9999999988654 345666          


Q ss_pred             ---CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-------c---------------CCCCeEEEEccCC
Q psy6446          62 ---HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-------F---------------GAVPNSLEISRDG  116 (134)
Q Consensus        62 ---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~---------------~~~v~~~~~~~~~  116 (134)
                         |...|.+++|+|++++|++++.|+.|++||+.+++.+..+.       +               ...|.+++|+|++
T Consensus       287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence               89999999999999999999999999999999999988887       3               6789999999998


Q ss_pred             ----------cEEEEe-cCCeEEEEeCCC
Q psy6446         117 ----------TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       117 ----------~~l~~~-~~~~i~i~d~~t  134 (134)
                                .+++++ .||.|++||+++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCC
Confidence                      677765 689999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-25  Score=141.28  Aligned_cols=134  Identities=18%  Similarity=0.349  Sum_probs=116.6

Q ss_pred             CeeEeecCCCceeeEEeeC------CCceeeEEEccCC-cEEEEecCCC---eEEEEECCCCCCCCeEEe-CCCCCEeEE
Q psy6446           1 MGTVWDAVSGEELHSFQHP------HIVKSSVHFATDS-YRLATGSNDK---NIRIYDLNKPDAEPTVYR-GHSSGIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~l~~~~~d~---~v~i~~~~~~~~~~~~~~-~~~~~v~~~   69 (134)
                      +|++||+.+++.+..+..+      ...+.+++|+|++ .++++++.|+   .|++||+++.......+. +|...|.++
T Consensus       189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  268 (416)
T 2pm9_A          189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL  268 (416)
T ss_dssp             CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred             CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence            4899999999999888853      5556669999987 6899999998   999999998655556667 899999999


Q ss_pred             EEee-CCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCC-cEEEEe-cCCeEEEEeCCC
Q psy6446          70 QFFK-NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG-TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        70 ~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~-~~~~i~i~d~~t  134 (134)
                      +|+| +++++++++.|+.|++||+++++.+..+. +...+.+++|+|++ .+++++ .|+.|++||+++
T Consensus       269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            9999 89999999999999999999999888876 57889999999998 788775 689999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=1.4e-25  Score=137.42  Aligned_cols=131  Identities=19%  Similarity=0.241  Sum_probs=108.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+..+...+.+++|+|++++|++|+.|+.|++||+++.... ..+. +...+..+.|+|++. +++
T Consensus       196 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~-~~~  272 (340)
T 4aow_A          196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-YTLD-GGDIINALCFSPNRY-WLC  272 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-EEEE-CSSCEEEEEECSSSS-EEE
T ss_pred             EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-eeec-CCceEEeeecCCCCc-eee
Confidence            4889999999999998866666666999999999999999999999999986543 3344 456899999999875 456


Q ss_pred             eeCCCcEEEEecCCCceeEEEe----------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE----------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||++++.....+.          +...|.+++|+|++++|+++ .||.|++||++|
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            6679999999999887766553          35678999999999999876 789999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=4.7e-27  Score=145.95  Aligned_cols=134  Identities=14%  Similarity=0.202  Sum_probs=101.2

Q ss_pred             CeeEeecCCCc---eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--CCeEEeC-CCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGE---ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--EPTVYRG-HSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~-~~~~v~~~~~~~~   74 (134)
                      +|++||+.+++   +...+..+...+.+++|+|+++.|++++.|+.|++||+++...  ....+.. |...|.+++|+|+
T Consensus        78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            58999999877   5555555555566699999999999999999999999988653  3455666 9999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCC------------------CceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSA------------------SAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++++++++.|+.|++||+..                  ++....+.+...+.+++|+|++++++++ .|+.|++||+++
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999852                  3344444567789999999999988875 789999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=7.5e-27  Score=145.06  Aligned_cols=133  Identities=14%  Similarity=0.207  Sum_probs=105.1

Q ss_pred             CeeEeecCCC--ceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCC--CCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSG--EELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--AEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||+.++  +++..+..+...+.+++|+|++++|++++.|+.|++||+.++.  .....+.+|...|.+++|+|+++
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  113 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED  113 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC
Confidence            4889999988  6777787556666669999999999999999999999998865  22344668999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCce---eEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAE---VQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .|++++.|+.|++||+++++.   ...+.  +...+.+++|+|++++++++ .|+.|++||++
T Consensus       114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            999999999999999998763   55555  67889999999999988875 68999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=5.3e-26  Score=142.55  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=113.9

Q ss_pred             CeeEeecCCC-------ceeeEEeeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEE--eCCCCCEeEEE
Q psy6446           1 MGTVWDAVSG-------EELHSFQHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVY--RGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~v~~~~   70 (134)
                      +|++||+.++       +++..+.++...+.+++|+|++ +.|++++.|+.|++||+.++... ..+  .+|...|.+++
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-EEECTTTCCSCEEEEE
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-EEEecCCCCCceEEEE
Confidence            4899999987       6677888666666669999998 69999999999999999986543 455  67999999999


Q ss_pred             EeeCCCEEEEeeCCCcEEEEecCCCceeEEE-e-cCC-CCeEEEEccCCcEEEEe----cCCeEEEEeCCC
Q psy6446          71 FFKNNTRLISCAEDKTVRLWDVSASAEVQKL-E-FGA-VPNSLEISRDGTTITVT----HGSCVTFLDANS  134 (134)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~-~~~-~v~~~~~~~~~~~l~~~----~~~~i~i~d~~t  134 (134)
                      |+|+++.|++++.|+.|++||+++++....+ . +.. .+.++.|+|++.+++++    .++.|++||+++
T Consensus       184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            9999999999999999999999999988887 3 333 38999999999999887    579999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.8e-25  Score=137.96  Aligned_cols=133  Identities=20%  Similarity=0.259  Sum_probs=114.8

Q ss_pred             CeeEeecCCCceeeEEee-----CCCceeeEEEccC----CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQH-----PHIVKSSVHFATD----SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~   71 (134)
                      .|++||+.+++.+..+..     +...+.+++|+|+    +++|++++.||.|++||+.++.. ...+.+|...|.+++|
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~  123 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-IKHYVGHGNAINELKF  123 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-EEEEESCCSCEEEEEE
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-eeeecCCCCcEEEEEE
Confidence            378999998888777762     2344666999998    67999999999999999988654 4567889999999999


Q ss_pred             ee-CCCEEEEeeCCCcEEEEecCCCceeEEE----ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          72 FK-NNTRLISCAEDKTVRLWDVSASAEVQKL----EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        72 ~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +| +++.+++++.|+.|++||+++++....+    .+...+.+++|+|++.+++++ .|+.|++||+++
T Consensus       124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            99 8999999999999999999999988887    367889999999999988876 689999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.5e-25  Score=136.75  Aligned_cols=130  Identities=8%  Similarity=0.095  Sum_probs=98.0

Q ss_pred             CeeEeecCCCceeeEEe-eCC--CceeeEEEccCCcEE------------EEecCCCeEEEEECCCCCCCCeEE-----e
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPH--IVKSSVHFATDSYRL------------ATGSNDKNIRIYDLNKPDAEPTVY-----R   60 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l------------~~~~~d~~v~i~~~~~~~~~~~~~-----~   60 (134)
                      +|+|||+.+|++++++. ++.  ..+.+++|+|+|..+            ++|+.|+.+++||..++.... .+     .
T Consensus       204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~-v~~~~~p~  282 (356)
T 2w18_A          204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG-VMLYCLPP  282 (356)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE-EEEECCCT
T ss_pred             cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE-EEEeeccC
Confidence            58999999999999997 332  234447899999876            567889999999998765432 22     3


Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCC-CeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAV-PNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|...+.+..+  ++..+++++.|++|++||+.+++++.++. +... +.+++|+|+|++|+++ .|++|++||+.
T Consensus       283 Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          283 GQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            56555443333  48889999999999999999999999987 4444 4568999999999987 68999999963

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=5e-25  Score=134.65  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=115.7

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++  ....+..+...+.+++|+|+++.+++++.|+.+++||++++.. ...+..|...+.+++|+|+++.+
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCCEE
Confidence            37899999887  4555665556666699999999999999999999999988653 45677899999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++++.|+.+++||+++++....+.+...+.+++|+|++.+++++ .++.|++||+++
T Consensus       199 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            99999999999999999999888888999999999999998876 689999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=2.2e-25  Score=136.36  Aligned_cols=134  Identities=19%  Similarity=0.292  Sum_probs=107.6

Q ss_pred             CeeEeecCCC---------ceeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCCCC--------------
Q psy6446           1 MGTVWDAVSG---------EELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDAE--------------   55 (134)
Q Consensus         1 ~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~--------------   55 (134)
                      +|++||+.++         +++..+..+...+.+++|+|+  +++|++++.|+.|++||++++...              
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            5899999887         556677655555666999999  999999999999999998764321              


Q ss_pred             ---------------------------------------------CeEEeCCCCCEeEEEEeeCC----CEEEEeeCCCc
Q psy6446          56 ---------------------------------------------PTVYRGHSSGIKHVQFFKNN----TRLISCAEDKT   86 (134)
Q Consensus        56 ---------------------------------------------~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~   86 (134)
                                                                   ...+.+|...|.+++|+|++    +++++++.|+.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence                                                         12234688899999999998    79999999999


Q ss_pred             EEEEecCCC----------------------------------------------ceeEEEe-cCCCCeEEEEccCCcEE
Q psy6446          87 VRLWDVSAS----------------------------------------------AEVQKLE-FGAVPNSLEISRDGTTI  119 (134)
Q Consensus        87 i~~~d~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~~l  119 (134)
                      |++||++.+                                              +.+..+. +...|.+++|+|++++|
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            999999864                                              2333333 46789999999999988


Q ss_pred             EEe-cCCeEEEEeCCC
Q psy6446         120 TVT-HGSCVTFLDANS  134 (134)
Q Consensus       120 ~~~-~~~~i~i~d~~t  134 (134)
                      +++ .||.|++||+++
T Consensus       322 ~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEEETTSCEEEEEECT
T ss_pred             EEecCCCcEEEEecCc
Confidence            875 689999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=5.3e-25  Score=134.54  Aligned_cols=130  Identities=20%  Similarity=0.282  Sum_probs=116.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+.+...+.. ++|+|+++.+++++.++.+++||+++...  ..+..|...+.+++|+|+++++++
T Consensus       206 ~i~~~d~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQHDFTSQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEE-EEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEECCCCceEeeecCCCceEE-EEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEE
Confidence            378999999999988887766655 99999999999999999999999987543  356789999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.+++||+.+++......+...+.+++|+|++++++++ .||.|++||+.
T Consensus       283 ~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            999999999999999988888888999999999999988875 78999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=8.1e-26  Score=149.97  Aligned_cols=134  Identities=22%  Similarity=0.323  Sum_probs=113.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC--eEEeCCCCCEeEEEEeeCC--C
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP--TVYRGHSSGIKHVQFFKNN--T   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~--~   76 (134)
                      +|++||+.+++.+..+.++...+.+++|+|+++.|++++.|+.|++||........  ....+|...|.+++|+|++  .
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            48999999999999998655666669999999999999999999999986532110  1114688899999999976  5


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+++++.|+.|++||+++++....+. |...|.+++|+|++++++++ .|+.|++||+++
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            79999999999999999988887776 67889999999999999876 689999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=8e-25  Score=136.33  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=110.7

Q ss_pred             CeeEeecCCCceeeEEe-eC--CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-
Q psy6446           1 MGTVWDAVSGEELHSFQ-HP--HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-   76 (134)
                      +|++||+.+ +.+..+. +.  ...+.+++|+|+++.|++++.|+.|++||++. . ....+.+|...|.+++|+|+++ 
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~-~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-H-EIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-C-EEEEEECSSSCEEEEEECSSCTT
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-C-EEEEeccCCCcEEEEEECCCCCC
Confidence            478999985 5555555 22  24466699999999999999999999999953 3 4456789999999999999998 


Q ss_pred             EEEEeeCCCcEEEEecCC----CceeEEEecCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSA----SAEVQKLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+++++.|+.|++||+++    +.....+.+...+.+++|+| ++.+++++ .|+.|++||+++
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            899999999999999998    66777777889999999999 99988875 689999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-25  Score=144.92  Aligned_cols=133  Identities=11%  Similarity=0.073  Sum_probs=107.4

Q ss_pred             CeeEeecCCCce-----------eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEE
Q psy6446           1 MGTVWDAVSGEE-----------LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~   69 (134)
                      +|++||+.+++.           ...+.++...+.+++|+++ ..|++|+.||.|++||++++..+...+.+|...|.++
T Consensus       236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            589999986642           2355655566667999986 4899999999999999997655556688999999999


Q ss_pred             --EEeeCC-CEEEEeeCCCcEEEEecCCCceeEEEe-cC--CCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          70 --QFFKNN-TRLISCAEDKTVRLWDVSASAEVQKLE-FG--AVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        70 --~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~--~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                        .|+|++ +.|++++.|++|++||++++++...+. +.  ..+.+++|+|++..++++ .|+.|++||+++
T Consensus       315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             EEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence              567787 899999999999999999887766554 22  357899999999888775 679999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=8.6e-25  Score=139.07  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+..+...+.++.|+|+++.+++|+.||.|++||++++.. ...+.+|...|.+++|+  ++++++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~s  367 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLS--DKFLVS  367 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEC--SSEEEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEEEc--CCEEEE
Confidence            589999999999999986566666699999999999999999999999988654 45678999999999996  689999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+.++.......+...+..++|+|++.+++++.++.|++||+++
T Consensus       368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~  421 (464)
T 3v7d_B          368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS  421 (464)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred             EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence            999999999999998888888788888999999999999998899999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=137.90  Aligned_cols=130  Identities=15%  Similarity=0.293  Sum_probs=110.6

Q ss_pred             eecCCCceeeEEeeCCCceeeEEEccC---CcEEEEecCCCeEEEEECCC-CCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           5 WDAVSGEELHSFQHPHIVKSSVHFATD---SYRLATGSNDKNIRIYDLNK-PDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         5 ~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ++....+.+..+.++...+.+++|+|+   |++|++++.||.|++||+.+ +......+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            334445556666666666777999998   69999999999999999987 34333567889999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEE--ccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEI--SRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+.+++......+...+.+++|  +|++.+++++ .|+.|++||+++
T Consensus       104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            99999999999999998888888999999999  8899888775 689999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=4.8e-26  Score=143.09  Aligned_cols=132  Identities=15%  Similarity=0.291  Sum_probs=112.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++....+..+ .......|+|++++|++++.|+.|++||+.++.. ...+.+|...|.+++|+|++++|++
T Consensus        79 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s  156 (420)
T 3vl1_A           79 HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-REIDQAHVSEITKLKFFPSGEALIS  156 (420)
T ss_dssp             EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-EEETTSSSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-eeecccccCccEEEEECCCCCEEEE
Confidence            3789999887776666544 4455478899999999999999999999987543 3455689999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+.+++....+. +...|.+++|+|++.+++++ .|+.|++||+++
T Consensus       157 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          157 SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            9999999999999998888777 67889999999999988875 689999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=1.3e-24  Score=135.68  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=110.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEE---------------eCCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVY---------------RGHSS   64 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~---------------~~~~~   64 (134)
                      .|++||+.+++.+..+..+...+.+++|+|+++ .+++++.||.|++||+++.......+               ..|..
T Consensus       167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            478999999999999985556666699999988 58899999999999998765333333               57889


Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce-----------------------------------------------
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE-----------------------------------------------   97 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----------------------------------------------   97 (134)
                      .|.+++|+|+++++++++.|+.+++||+.+++.                                               
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            999999999999999999999999999876432                                               


Q ss_pred             eEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          98 VQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        98 ~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +..+. +...|.+++|+|++++|+++ .||.|++||+++
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            22222 45788999999999998876 689999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=4.4e-25  Score=136.71  Aligned_cols=132  Identities=11%  Similarity=0.149  Sum_probs=103.9

Q ss_pred             CeeEeecCCCc---------------e-eeEEeeCCCceeeEEEccCCcEEEEecCCCe-EEEEECCCCCCCCeEEe-C-
Q psy6446           1 MGTVWDAVSGE---------------E-LHSFQHPHIVKSSVHFATDSYRLATGSNDKN-IRIYDLNKPDAEPTVYR-G-   61 (134)
Q Consensus         1 ~i~v~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~i~~~~~~~~~~~~~~-~-   61 (134)
                      +|++||+.+++               + +..+..+...+.+++|+|++++|++++.|+. |++||++++... ..+. + 
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~  238 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGL  238 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTT
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCC
Confidence            48899998765               2 6677766666666999999999999999998 999999987655 4455 5 


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE--------------------EEec----CCCCeEEEEccCCc
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ--------------------KLEF----GAVPNSLEISRDGT  117 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------------------~~~~----~~~v~~~~~~~~~~  117 (134)
                      |...|.+++|+|++++|++++.|+.|++||+..+....                    .+..    ......++|++++.
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~  318 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS  318 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence            99999999999999999999999999999997653211                    1111    12236789999998


Q ss_pred             EEEEe-cCCeEEEEeCC
Q psy6446         118 TITVT-HGSCVTFLDAN  133 (134)
Q Consensus       118 ~l~~~-~~~~i~i~d~~  133 (134)
                      .++++ .||.+++|++.
T Consensus       319 ~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          319 LVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             EEEEETTTTEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEE
Confidence            88876 68999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=3.1e-24  Score=134.61  Aligned_cols=132  Identities=17%  Similarity=0.255  Sum_probs=114.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+..+...+.++.|  +++.+++++.||.|++||++........+.+|.+.|.+++|+|+++.+++
T Consensus       157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  234 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS  234 (401)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence            4899999999999999866666666999  46799999999999999999666666678899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCc-EEEEec---CCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITVTH---GSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~---~~~i~i~d~~t  134 (134)
                      ++.|+.|++||+++++....+. +...+.+++|+|++. ++++++   |+.|++||+++
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            9999999999999988887775 678899999999874 555543   89999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=9.2e-25  Score=146.52  Aligned_cols=132  Identities=19%  Similarity=0.296  Sum_probs=114.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+..+...+.+++|+|++++|++++.||.|++||+.++.. ...+.+|...|.+++|+|+++++++
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCEEEEEEeCCCCEEEE
Confidence            478999999999999996666666699999999999999999999999998664 3567889999999999999999999


Q ss_pred             eeCCCcEEEEecCCC-ceeEEEe-cCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISR-DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+.++ .....+. +...+.+++|+| ++..++++ .||.|++||++
T Consensus       115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~  171 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (814)
T ss_dssp             EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999887 4445544 578899999999 77777765 68999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=1.7e-24  Score=150.53  Aligned_cols=132  Identities=21%  Similarity=0.292  Sum_probs=117.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee--CCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK--NNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l   78 (134)
                      +|++||+.+++.+..+..+...+.+++|+|++++|++++.|+.|++||+.++.. ...+.+|...|.+++|+|  ++..+
T Consensus       638 ~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l  716 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLL  716 (1249)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSCCEE
T ss_pred             eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEecCCCceEE
Confidence            589999999999999996666666799999999999999999999999998654 456789999999999999  55688


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++.|+.|++||+.++++...+. +...|.+++|+|++.+++++ .||.|++||++
T Consensus       717 ~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~  773 (1249)
T 3sfz_A          717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR  773 (1249)
T ss_dssp             EEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred             EEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence            999999999999999999888776 67889999999999988876 68999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.6e-24  Score=130.38  Aligned_cols=129  Identities=22%  Similarity=0.397  Sum_probs=110.3

Q ss_pred             CeeEeecCCCceeeEEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||  .++....+.. +...+.+++|+|++. +++++.|+.+++||++++.. ...+.+|...+.+++|+|++ .++
T Consensus       166 ~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          166 TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-CEE
T ss_pred             CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-CEE
Confidence            478999  4566666763 556666699999988 99999999999999998654 45678899999999999998 589


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      +++.|+.|++||+.+++....+.. ...+.+++|+|++++++++.||.|++||+++
T Consensus       241 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          241 SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             EEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence            999999999999999998888874 5689999999999987777899999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=2e-24  Score=140.33  Aligned_cols=129  Identities=26%  Similarity=0.452  Sum_probs=110.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||. +++.+..+..+...+.+++|+|+++.|++++.|+.+++|+...  .....+.+|...|.+++|+|++++|++
T Consensus       408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las  484 (577)
T 2ymu_A          408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIAS  484 (577)
T ss_dssp             EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred             EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            3789995 5778888885555666699999999999999999999999753  334567899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||. +++....+. +...|.+++|+|++++|+++ .|+.|++||..
T Consensus       485 ~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          485 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            999999999995 567766665 67889999999999988875 68999999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-24  Score=136.78  Aligned_cols=133  Identities=15%  Similarity=0.116  Sum_probs=113.0

Q ss_pred             CeeEeecC--CCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC---CeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAV--SGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~   73 (134)
                      +|++||+.  +++.+..+.  .....+.+++|+|++++|++++.+|.+++|++.+....   ...+.+|...|.+++|+|
T Consensus       126 ~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  205 (450)
T 2vdu_B          126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK  205 (450)
T ss_dssp             EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE
T ss_pred             eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC
Confidence            47899999  888888875  33344555999999999999999999999999876532   224678999999999999


Q ss_pred             C---CCEEEEeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          74 N---NTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        74 ~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +   +++|++++.|+.|++||+.+++.+..+.  +...|.+++|+ ++.+++++ .|+.|++||+++
T Consensus       206 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            9   9999999999999999999998877644  67889999999 99988875 689999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.4e-26  Score=142.56  Aligned_cols=132  Identities=15%  Similarity=0.227  Sum_probs=109.4

Q ss_pred             CeeEeecCCCceeeEEee--CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEee----
Q psy6446           1 MGTVWDAVSGEELHSFQH--PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFK----   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~----   73 (134)
                      +|++||+.+++++..+..  +...+.+++|+|++++|++|+.||.|++||++++... ..+. .|...|.+++|+|    
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI-RSWSFGDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE-EEEBCTTCEEEEEEEECTTTCT
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE-EEEecCCCCceEEEEeccccCC
Confidence            478999999999999985  5566666999999999999999999999999985543 3343 7778999996664    


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEe---------------------------cCCCCeEEEEccCCcEEEEe-cCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLE---------------------------FGAVPNSLEISRDGTTITVT-HGS  125 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~-~~~  125 (134)
                      +++++++++.|+.|++||++++++...+.                           +...|.+++|+ ++.+++++ .|+
T Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            57799999999999999999998887776                           23347889999 67777776 689


Q ss_pred             eEEEEeCCC
Q psy6446         126 CVTFLDANS  134 (134)
Q Consensus       126 ~i~i~d~~t  134 (134)
                      .|++||+++
T Consensus       351 ~i~~wd~~~  359 (437)
T 3gre_A          351 SIVMFSLNE  359 (437)
T ss_dssp             EEEEEETTC
T ss_pred             eEEEEECCC
Confidence            999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=8.5e-25  Score=145.13  Aligned_cols=133  Identities=18%  Similarity=0.273  Sum_probs=112.4

Q ss_pred             CeeEeecCCCceeeEEe---eCCCceeeEEEccCC--cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQ---HPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +|++||...........   .+...+.+++|+|++  ..+++++.|+.|++||+++.. ....+.+|.+.|.+++|+|++
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg  573 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDG  573 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCC
Confidence            58999986543333222   344456669999976  579999999999999998754 345678999999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++|++++.|+.|++||+++++.+..+.....+.+++|+|++.+++++.++.|++||+++
T Consensus       574 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLES  632 (694)
T ss_dssp             SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence            99999999999999999999988887778889999999999999998888999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.5e-25  Score=150.42  Aligned_cols=132  Identities=15%  Similarity=0.146  Sum_probs=111.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC----------eEEeCCCCCEeEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP----------TVYRGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----------~~~~~~~~~v~~~~   70 (134)
                      +|++||+.+++++..+.++..+ .+++|+|+++++++|+.||.|++||+++.....          ..+.+|.+.|.+++
T Consensus        80 ~v~lWd~~~~~~~~~~~~~~~V-~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           80 TVYVLSLYSQKVLTTVFVPGKI-TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             EEEEEETTTCSEEEEEECSSCE-EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCE-EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            4899999999999988866554 559999999999999999999999998754210          12357889999999


Q ss_pred             EeeC-CCEEEEeeCCCcEEEEecCCCceeEEEecC-------------------CCCeEEEEccCCcEEEEe-cCCeEEE
Q psy6446          71 FFKN-NTRLISCAEDKTVRLWDVSASAEVQKLEFG-------------------AVPNSLEISRDGTTITVT-HGSCVTF  129 (134)
Q Consensus        71 ~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~-~~~~i~i  129 (134)
                      |+|+ +..+++++.|+.+ +||+++++....+...                   ..|.+++|+|+|.+|+++ .|+.|++
T Consensus       159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            9995 5788999999999 9999999888777533                   569999999999999876 6899999


Q ss_pred             EeCCC
Q psy6446         130 LDANS  134 (134)
Q Consensus       130 ~d~~t  134 (134)
                      ||+++
T Consensus       238 Wd~~~  242 (902)
T 2oaj_A          238 WDANS  242 (902)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.7e-24  Score=132.61  Aligned_cols=134  Identities=13%  Similarity=0.309  Sum_probs=110.5

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEee--
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFK--   73 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~--   73 (134)
                      +|++||+.+++  .+..+..+...+.+++|+|+  ++.|++++.|+.|++||++.... ....+..|...|.+++|+|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            48999999887  56666655556666999998  99999999999999999988643 2335678999999999999  


Q ss_pred             -----------CCCEEEEeeCCCcEEEEecCCCcee----EEEe-cCCCCeEEEEccC---CcEEEEe-cCCeEEEEeCC
Q psy6446          74 -----------NNTRLISCAEDKTVRLWDVSASAEV----QKLE-FGAVPNSLEISRD---GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        74 -----------~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~-~~~~v~~~~~~~~---~~~l~~~-~~~~i~i~d~~  133 (134)
                                 +++.+++++.|+.|++||+++++..    ..+. +...+.+++|+|+   +.+++++ .||.|++||++
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       6999999999999999999876543    2232 5678999999999   8888875 68999999986


Q ss_pred             C
Q psy6446         134 S  134 (134)
Q Consensus       134 t  134 (134)
                      +
T Consensus       240 ~  240 (379)
T 3jrp_A          240 N  240 (379)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=1.7e-25  Score=136.59  Aligned_cols=133  Identities=21%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCCCC--CeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPDAE--PTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~   74 (134)
                      +|++||+.+++  .+..+..+...+.+++|+|+  +.+|++++.|+.|++||++.....  ...+.+|...+.+++|+|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            58999998874  45566645555556999997  789999999999999999865321  2345678899999999997


Q ss_pred             -----------------CCEEEEeeCCCcEEEEecCCCc---eeEEEe-cCCCCeEEEEccCC----cEEEEe-cCCeEE
Q psy6446          75 -----------------NTRLISCAEDKTVRLWDVSASA---EVQKLE-FGAVPNSLEISRDG----TTITVT-HGSCVT  128 (134)
Q Consensus        75 -----------------~~~l~~~~~d~~i~~~d~~~~~---~~~~~~-~~~~v~~~~~~~~~----~~l~~~-~~~~i~  128 (134)
                                       +++|++++.|+.|++||++...   +...+. |...|.+++|+|++    .+|+++ .|+.|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                             4689999999999999997553   333333 56789999999986    677765 789999


Q ss_pred             EEeCC
Q psy6446         129 FLDAN  133 (134)
Q Consensus       129 i~d~~  133 (134)
                      +||++
T Consensus       242 iw~~~  246 (316)
T 3bg1_A          242 IWTCD  246 (316)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            99975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=2e-25  Score=141.30  Aligned_cols=132  Identities=20%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             CeeEeecCCCceeeEEeeC--CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-E
Q psy6446           1 MGTVWDAVSGEELHSFQHP--HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-R   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   77 (134)
                      +|++||++++.......+.  ...+.+++|+|++++|++|+.||.|++||++..  ....+.+|...|.+++|+|+++ .
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceE
Confidence            5899999865544333322  223455999999999999999999999999753  2345678999999999999876 6


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEE----ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKL----EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++++.|+.|++||+++.+....+    .|...|.+++|+|++.+|+++ .|+.|++||+++
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            779999999999999876654333    357789999999999998875 789999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-24  Score=134.61  Aligned_cols=131  Identities=22%  Similarity=0.313  Sum_probs=115.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .|++||+.+++.+..+..+...+.+++|+|+++.|++++.|+.|++||+++... ...+..|...+.+++|+|++ .+++
T Consensus       228 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~  305 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVIS  305 (425)
T ss_dssp             CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEE
T ss_pred             eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEE
Confidence            478999999999888885556666699999999999999999999999988654 45677899999999999999 9999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+++++....+. +...+.+++|+|++.+++++ .||.|++||++
T Consensus       306 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            9999999999999999888777 47789999999999998876 68999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=1.2e-24  Score=133.17  Aligned_cols=133  Identities=14%  Similarity=0.217  Sum_probs=106.1

Q ss_pred             CeeEeecCCC----ceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCC--------CCeEEeCCCCCE
Q psy6446           1 MGTVWDAVSG----EELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDA--------EPTVYRGHSSGI   66 (134)
Q Consensus         1 ~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~--------~~~~~~~~~~~v   66 (134)
                      +|++||+.++    +.+..+..+...+.+++|+|  ++++|++++.||.|++||++++..        ....+..|...|
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v  113 (351)
T 3f3f_A           34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL  113 (351)
T ss_dssp             EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred             eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence            4899999876    35666675666666699999  699999999999999999987542        234567899999


Q ss_pred             eEEEEeeC--CCEEEEeeCCCcEEEEecCCCcee----------------------------------------------
Q psy6446          67 KHVQFFKN--NTRLISCAEDKTVRLWDVSASAEV----------------------------------------------   98 (134)
Q Consensus        67 ~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~----------------------------------------------   98 (134)
                      .+++|+|+  ++++++++.|+.|++||+++++..                                              
T Consensus       114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  193 (351)
T 3f3f_A          114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA  193 (351)
T ss_dssp             EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred             eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence            99999999  999999999999999998765421                                              


Q ss_pred             --------------EEEe-cCCCCeEEEEccCC----cEEEEe-cCCeEEEEeCC
Q psy6446          99 --------------QKLE-FGAVPNSLEISRDG----TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        99 --------------~~~~-~~~~v~~~~~~~~~----~~l~~~-~~~~i~i~d~~  133 (134)
                                    ..+. +...|.+++|+|++    .+++++ .||.|++||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence                          1111 35678999999998    677765 68999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=2.3e-24  Score=132.68  Aligned_cols=133  Identities=14%  Similarity=0.201  Sum_probs=111.7

Q ss_pred             CeeEeecCCCc-eeeEEeeCCCceeeEE------EccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC----CEeEE
Q psy6446           1 MGTVWDAVSGE-ELHSFQHPHIVKSSVH------FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS----GIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~v~~~   69 (134)
                      +|++||+.+++ ++..+..+...+.++.      |+|+++.|++++.|+.|++||++++......+..|.+    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            48999999888 7888886556666585      4688999999999999999999987655566666554    78888


Q ss_pred             E----EeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEcc---CCcEEEEe-cCCeEEEEeCC
Q psy6446          70 Q----FFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR---DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        70 ~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .    |+|+++++++++.|+.|++||+++++......+...+.+++|+|   ++.+++++ .||.|++||++
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            8    67899999999999999999999999887777889999999999   88888875 68999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=1.7e-24  Score=133.95  Aligned_cols=133  Identities=16%  Similarity=0.111  Sum_probs=110.6

Q ss_pred             CeeEeecCCCce---eeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCC-----------------CCCCCeEE
Q psy6446           1 MGTVWDAVSGEE---LHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-----------------PDAEPTVY   59 (134)
Q Consensus         1 ~i~v~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~   59 (134)
                      +|++||+.+++.   ...+. .+...+.+++|+|++++|++++.|+.+++||++.                 .......+
T Consensus       119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            478999988763   33332 3345556699999999999999999999999742                 12233455


Q ss_pred             eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      .+|...+.+++|+|+++++++++.|+.|++||+++++.+..+. +...+.+++|+|++.+++++.|+.|++||++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~  273 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYD  273 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence            6889999999999999999999999999999999999888887 4568999999999999999999999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=3.3e-25  Score=144.58  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=109.5

Q ss_pred             CeeEeecCCCcee-eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEee-----
Q psy6446           1 MGTVWDAVSGEEL-HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFK-----   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----   73 (134)
                      +|++||+.+++.. ..+..+...+.+++|+|++++|++++.|+.|++||+.++... ..+.+ |...|.+++|+|     
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC---
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-eEeecCCCCceeEEEEcCccccc
Confidence            4789999877665 444444555566999999999999999999999999886543 34455 999999999999     


Q ss_pred             -----CCCEEEEeeCCCcEEEEecCCC-ceeEEEe-cCCCCeEEEEccCCcEEEE-ecCCeEEEEeCCC
Q psy6446          74 -----NNTRLISCAEDKTVRLWDVSAS-AEVQKLE-FGAVPNSLEISRDGTTITV-THGSCVTFLDANS  134 (134)
Q Consensus        74 -----~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~t  134 (134)
                           ++++|++++.|+.|++||+.++ +....+. +...|.+++|+|+++ |++ +.|+.|++||+++
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                 9999999999999999999987 5665554 578899999999999 766 4789999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-24  Score=135.91  Aligned_cols=131  Identities=13%  Similarity=0.139  Sum_probs=113.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+..+...+.++.|+|++ .+++++.|+.+++||++++.. ...+..|...+.+++|+|+++++++
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCEEEE
Confidence            48999999999998888555556669999999 999999999999999988653 4567788999999999999999999


Q ss_pred             eeCCCcEEEEecCCCc--------------------eeEEEecC--C-CCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASA--------------------EVQKLEFG--A-VPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~--------------------~~~~~~~~--~-~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+.+++                    .+..+...  . .+.+++|+|++++|+++ .||.|++||++
T Consensus       348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999877                    66666643  3 89999999999988765 78999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=133.41  Aligned_cols=133  Identities=15%  Similarity=0.179  Sum_probs=108.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc---CCcEEEEecCCCeEEEEECCCCCCCCeE----EeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT---DSYRLATGSNDKNIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~----~~~~~~~v~~~~~~~   73 (134)
                      +|++||+.+++......+...+.. +.|+|   +++.+++++.||.|++||+++.......    +.+|...|.+++|+|
T Consensus       191 ~i~i~d~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  269 (357)
T 3i2n_A          191 DIKLFDLRNMALRWETNIKNGVCS-LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP  269 (357)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEE-EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET
T ss_pred             eEEEEECccCceeeecCCCCceEE-EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC
Confidence            378999999988766656655554 99999   9999999999999999999876544321    238999999999999


Q ss_pred             CCC-EEEEeeCCCcEEEEecCCCc-------------------eeEEEe-cCCCCeEEEEccCCcEEE-Ee-cCCeEEEE
Q psy6446          74 NNT-RLISCAEDKTVRLWDVSASA-------------------EVQKLE-FGAVPNSLEISRDGTTIT-VT-HGSCVTFL  130 (134)
Q Consensus        74 ~~~-~l~~~~~d~~i~~~d~~~~~-------------------~~~~~~-~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~  130 (134)
                      +++ ++++++.|+.|++||++.+.                   .+..+. +...|.+++|+|++++++ ++ .|+.|++|
T Consensus       270 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          270 QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence            998 79999999999999998643                   233333 577899999999998877 44 68999999


Q ss_pred             eCCC
Q psy6446         131 DANS  134 (134)
Q Consensus       131 d~~t  134 (134)
                      |+.+
T Consensus       350 ~~~~  353 (357)
T 3i2n_A          350 IVTK  353 (357)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=4.9e-24  Score=133.72  Aligned_cols=133  Identities=19%  Similarity=0.284  Sum_probs=112.5

Q ss_pred             CeeEeecC-CCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EE
Q psy6446           1 MGTVWDAV-SGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RL   78 (134)
Q Consensus         1 ~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l   78 (134)
                      +|++||+. .+..+..+..+...+.++.|+|+++.|++++.|+.|++||+++... ...+..|...|.+++|+|++. .+
T Consensus       197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEE
T ss_pred             CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEE
Confidence            37899998 5666777775556666699999999999999999999999998553 345678999999999999765 45


Q ss_pred             EEee--CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE--e-cCCeEEEEeCCC
Q psy6446          79 ISCA--EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV--T-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~--~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~~~~i~i~d~~t  134 (134)
                      ++++  .|+.|++||+.+++....+.+...+.+++|+|+++++++  + .+|.|++||+++
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            5554  699999999999999999988899999999999998887  4 479999999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.3e-24  Score=138.00  Aligned_cols=132  Identities=10%  Similarity=0.050  Sum_probs=104.1

Q ss_pred             CeeEeecCCCcee----eEEeeCCCceeeEEEccC------CcEEEEecCCCeEEEEECCCCCC----------CCeEEe
Q psy6446           1 MGTVWDAVSGEEL----HSFQHPHIVKSSVHFATD------SYRLATGSNDKNIRIYDLNKPDA----------EPTVYR   60 (134)
Q Consensus         1 ~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~v~i~~~~~~~~----------~~~~~~   60 (134)
                      +|+|||+.+++..    ..+.++...+..++|+|+      +.+|++++.||.|++||+..+..          +...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            4789999877642    345555555656999996      57999999999999999986532          123567


Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-eeEEEe-cCCCCeEE--EEccCC-cEEEEe-cCCeEEEEeCC
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-EVQKLE-FGAVPNSL--EISRDG-TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~l~~~-~~~~i~i~d~~  133 (134)
                      +|...|.+++|+++ ..|++|+.||+|++||++++. +...+. |...|.++  .|+|++ .+++++ .|++|++||++
T Consensus       264 ~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          264 LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            89999999999986 489999999999999998764 333344 67889999  578887 777765 78999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=7.3e-24  Score=134.08  Aligned_cols=133  Identities=20%  Similarity=0.289  Sum_probs=109.0

Q ss_pred             CeeEeecCCC---ceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSG---EELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||++++   +++..+..+...+.+++|+|++. .+++|+.||.|++||++........+..|...|.+++|+|+++
T Consensus       255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred             eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence            4789999987   56777775555666699999887 6889999999999999986666677889999999999999885


Q ss_pred             -EEEEeeCCCcEEEEecCCC--------------ceeEEEe-cCCCCeEEEEccCCc-EEEEe-cCCeEEEEeCC
Q psy6446          77 -RLISCAEDKTVRLWDVSAS--------------AEVQKLE-FGAVPNSLEISRDGT-TITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 -~l~~~~~d~~i~~~d~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~  133 (134)
                       .+++++.|+.|++||+...              +.+.... +...|.+++|+|+++ +++++ .||.|++|++.
T Consensus       335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence             6889999999999999872              3333332 466799999999998 66654 68999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=6.3e-25  Score=135.48  Aligned_cols=130  Identities=12%  Similarity=0.305  Sum_probs=108.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEE---eCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVY---RGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||+.+++.+..+..+...+.+++|+| +++.|++++.||.|++||++++... ..+   .+|...|.+++|+|+++
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-AIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-EEECSTTSCSSCEEEEEECTTSS
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-EEecccccccCceeEEEECCCCC
Confidence            478999999999999985556666699999 9999999999999999999886543 344   57999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEe-----------------------------cCCCCeEEEEccCCcEEEEe-cCCe
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLE-----------------------------FGAVPNSLEISRDGTTITVT-HGSC  126 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~-~~~~  126 (134)
                      .+++++.|+.|++||+++++....+.                             +...+.+++|+  +.+++++ .|+.
T Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~  252 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA  252 (366)
T ss_dssp             EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred             EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE
Confidence            99999999999999998765432221                             56789999998  5677765 6899


Q ss_pred             EEEEeCC
Q psy6446         127 VTFLDAN  133 (134)
Q Consensus       127 i~i~d~~  133 (134)
                      |++||++
T Consensus       253 i~~wd~~  259 (366)
T 3k26_A          253 IVCWKPG  259 (366)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=2.2e-24  Score=134.58  Aligned_cols=132  Identities=19%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             CeeEeecCC------Cceee-----EEee-------CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-
Q psy6446           1 MGTVWDAVS------GEELH-----SFQH-------PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-   61 (134)
Q Consensus         1 ~i~v~d~~~------~~~~~-----~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-   61 (134)
                      +|++||+.+      ++.+.     .+..       +...+.+++|+|++ .+++++.|+.|++||+++... ...+.. 
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~  226 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-LYNFESQ  226 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-EEEEECC
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce-eEEEecc
Confidence            478999988      67666     6643       44455559999999 999999999999999988553 355677 


Q ss_pred             --C---CCCEeEEEEeeCCCEEEEeeCC---CcEEEEecCCCceeEEEe--------------cCCCCeEEEEccCCcEE
Q psy6446          62 --H---SSGIKHVQFFKNNTRLISCAED---KTVRLWDVSASAEVQKLE--------------FGAVPNSLEISRDGTTI  119 (134)
Q Consensus        62 --~---~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l  119 (134)
                        |   ...+.+++|+|++++|++++.|   +.|++||+++++.+..+.              +...+.+++|+|+++++
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence              8   8999999999999999999999   999999999999888776              56789999999999998


Q ss_pred             EEe-cCCeEEEEeCCC
Q psy6446         120 TVT-HGSCVTFLDANS  134 (134)
Q Consensus       120 ~~~-~~~~i~i~d~~t  134 (134)
                      +++ .|+.|++||+++
T Consensus       307 ~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             EEEETTSEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCC
Confidence            876 689999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=7.7e-24  Score=131.89  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=107.6

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeC---CCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRG---HSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~   74 (134)
                      +|++||+.+++....+.  ++...+.+++|+| +++.|++++.|+.|++||+.. . ....+..   |...|.+++|+|+
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B           97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S-VIQVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C-EEEEEECCCCSSCCEEEEEEETT
T ss_pred             eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C-ceEEEeccCCCCCCeEEEEECCC
Confidence            58999999888887776  3555666699999 789999999999999999985 2 2233433   3478999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCc-EEEEe-cCCeEEEEeCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGT-TITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~  133 (134)
                      ++.+++++.|+.|++||++ ++....+. +...+.+++|+|+++ +++++ .|+.|++||++
T Consensus       175 ~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          175 RQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             TTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             CCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            9999999999999999994 56666665 678899999999998 77765 68999999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=7e-25  Score=138.64  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-------EEeCCCCCEeEEEEeeCC-CEEEEeeCCCcEEE
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-------VYRGHSSGIKHVQFFKNN-TRLISCAEDKTVRL   89 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~   89 (134)
                      .+...+.+++|+|+++.|++| .|+.|++||++.......       .+.+|...|.+++|+|++ +.+++++.|+.|++
T Consensus       175 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            344455559999999999999 799999999984332222       245789999999999998 99999999999999


Q ss_pred             EecCCCce----eEEEecC-C------------CCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          90 WDVSASAE----VQKLEFG-A------------VPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        90 ~d~~~~~~----~~~~~~~-~------------~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ||+++++.    ...+... .            .+.+++|+|++++++++.++.|++||+++
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~  315 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM  315 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC
Confidence            99998876    5666543 2            89999999999999987559999999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=5.4e-24  Score=131.31  Aligned_cols=95  Identities=22%  Similarity=0.372  Sum_probs=79.8

Q ss_pred             CeeEeecCC-Ccee-eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE--eeCCC
Q psy6446           1 MGTVWDAVS-GEEL-HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF--FKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~   76 (134)
                      +|++||+.+ ++.+ ..+..+...+.+++|+|++++|++++.||.|++||+.++...  ....|...|.+++|  +|+++
T Consensus        65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~  142 (368)
T 3mmy_A           65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--QIAQHDAPVKTIHWIKAPNYS  142 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEEEEEEECSSCE
T ss_pred             cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--eeccccCceEEEEEEeCCCCC
Confidence            478999997 5555 566655666666999999999999999999999999886532  35679999999999  78899


Q ss_pred             EEEEeeCCCcEEEEecCCCce
Q psy6446          77 RLISCAEDKTVRLWDVSASAE   97 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~   97 (134)
                      .+++++.|+.|++||+++++.
T Consensus       143 ~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          143 CVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEEEEETTSEEEEECSSCSSC
T ss_pred             EEEEccCCCcEEEEECCCCcE
Confidence            999999999999999987653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.2e-25  Score=138.06  Aligned_cols=133  Identities=14%  Similarity=0.260  Sum_probs=108.5

Q ss_pred             CeeEeecCCCc---eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC---CCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGE---ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK---PDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      +|++||+.+++   ++..+.+...+ .+++|+|++++|++++.||.|++|++..   +......+.+|...|.+++|+|+
T Consensus        46 ~v~iw~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  124 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASLQVDSKF-NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK  124 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCCCCSSCE-EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred             eEEEEEccCCCCCcEEEEEecCCce-EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence            47999999876   45555555554 4599999999999999999999999987   22344567789999999999998


Q ss_pred             -CCEEEEeeCCCcEEEEecCCCc------eeEEE----ecCCCCeEEEEccC-CcEEEEe-cCCeEEEEeCCC
Q psy6446          75 -NTRLISCAEDKTVRLWDVSASA------EVQKL----EFGAVPNSLEISRD-GTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        75 -~~~l~~~~~d~~i~~~d~~~~~------~~~~~----~~~~~v~~~~~~~~-~~~l~~~-~~~~i~i~d~~t  134 (134)
                       ++++++++.|+.|++||+.+++      ....+    .+...+.+++|+|+ +.+++++ .|+.|++||+++
T Consensus       125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence             8999999999999999999876      33332    35678999999999 6777775 689999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8.7e-25  Score=148.54  Aligned_cols=131  Identities=14%  Similarity=0.147  Sum_probs=104.2

Q ss_pred             CeeEeecCCCcee--eEEe---------eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC---------------
Q psy6446           1 MGTVWDAVSGEEL--HSFQ---------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA---------------   54 (134)
Q Consensus         1 ~i~v~d~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~---------------   54 (134)
                      +|++||+.++...  ..+.         .+...+.+++|+|+++.|++|+.||.|++|++.+++.               
T Consensus       458 tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          458 SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred             cEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence            5899999887532  1121         3344566699999999999999999999999876521               


Q ss_pred             -----------------------------CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE----
Q psy6446          55 -----------------------------EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL----  101 (134)
Q Consensus        55 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----  101 (134)
                                                   +...+.+|.+.|++++|+|+| +|++++.|++|++||++++..+...    
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~  616 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIRE  616 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhH
Confidence                                         134567899999999999999 9999999999999999877665421    


Q ss_pred             ---ecCCCCeEEEEc-----cCC---cEEEEe-cCCeEEEEeC
Q psy6446         102 ---EFGAVPNSLEIS-----RDG---TTITVT-HGSCVTFLDA  132 (134)
Q Consensus       102 ---~~~~~v~~~~~~-----~~~---~~l~~~-~~~~i~i~d~  132 (134)
                         .|...|.+++|+     |||   ++|+++ .|++|++||+
T Consensus       617 ~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          617 ISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             hccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence               245669999999     886   677775 7899999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=5.9e-24  Score=131.56  Aligned_cols=133  Identities=16%  Similarity=0.194  Sum_probs=109.1

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC---CCeEEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA---EPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +|++||+.+++....+.  .+...+.++.|+|++++|++++.|+.+++||++....   .......|...|.+++|+|++
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            48999999887655543  3445555699999999999999999999999987653   222335688999999999999


Q ss_pred             CEEEEeeCCCcEEEEecC------------------CCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVS------------------ASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++++++.|+.+++||++                  .++....+. +...+.+++|+|++.+++++ .|+.|++||++
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999999999954                  556666664 56789999999999888875 68999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=6.5e-25  Score=139.01  Aligned_cols=133  Identities=7%  Similarity=0.003  Sum_probs=101.5

Q ss_pred             CeeEeecCCCceeeEE--eeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeC--CCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSF--QHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRG--HSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~   75 (134)
                      +|+|||+.+++....+  .++...+.+++|+| ++++|++++.||.|++||+++.. .......  +...+.+++|+|++
T Consensus       143 ~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (435)
T 4e54_B          143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASS  221 (435)
T ss_dssp             CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTT
T ss_pred             EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCC
Confidence            5899999877654444  34555566699998 78999999999999999997643 2222222  33457899999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEEEe-cCCeEEEEeCCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TITVT-HGSCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~t  134 (134)
                      +++++++.|+.|++||++.........+...|.+++|+|++. +++++ .|+.|++||+++
T Consensus       222 ~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          222 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            999999999999999987543322223678899999999986 55554 689999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-23  Score=128.29  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=113.3

Q ss_pred             CeeEeecCC-CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVS-GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+.+ ++.+..+..+...+.+++|+|++++|++++.|+.|++||+++.... ..+. +...+..++|+|++++++
T Consensus       198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~  275 (369)
T 3zwl_B          198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITPLKEFII  275 (369)
T ss_dssp             EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECSSSSEEE
T ss_pred             EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee-eeec-CCCCceeEEecCCCceEE
Confidence            378999998 7788888855555666999999999999999999999999986543 3333 778999999999999999


Q ss_pred             EeeCCC--------------cEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAEDK--------------TVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~--------------~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.++              .+++||..+++....+. +...|.+++|+|++++++++ .||.|++||++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            999888              89999999999888877 67889999999999998876 68999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.5e-24  Score=132.68  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=109.4

Q ss_pred             CeeEeecC--CCceeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeC-
Q psy6446           1 MGTVWDAV--SGEELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKN-   74 (134)
Q Consensus         1 ~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-   74 (134)
                      +|++||+.  +++.+..+..+...+.+++|+++  +++|++++.||.|++||+.++. .....+..|...|.+++|+|+ 
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  113 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  113 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC
Confidence            58999998  55667777755666666999976  9999999999999999998764 133456779999999999998 


Q ss_pred             -CCEEEEeeCCCcEEEEecCCCceeE--E-EecCCCCeEEEEcc-------------CCcEEEEe-cCCeEEEEeCC
Q psy6446          75 -NTRLISCAEDKTVRLWDVSASAEVQ--K-LEFGAVPNSLEISR-------------DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 -~~~l~~~~~d~~i~~~d~~~~~~~~--~-~~~~~~v~~~~~~~-------------~~~~l~~~-~~~~i~i~d~~  133 (134)
                       ++.+++++.|+.|++||+.++....  . ..+...+.+++|+|             ++.+++++ .|+.|++||++
T Consensus       114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  190 (379)
T 3jrp_A          114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  190 (379)
T ss_dssp             GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec
Confidence             9999999999999999998874332  2 23678899999999             58888775 68999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1.7e-23  Score=132.37  Aligned_cols=134  Identities=16%  Similarity=0.281  Sum_probs=109.4

Q ss_pred             CeeEeecCC----------CceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCC------CeEEeCCC
Q psy6446           1 MGTVWDAVS----------GEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAE------PTVYRGHS   63 (134)
Q Consensus         1 ~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~------~~~~~~~~   63 (134)
                      +|++||+.+          .+++..+.++...+.+++|+|++. +|++|+.||.|++|++......      ...+.+|.
T Consensus       152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~  231 (430)
T 2xyi_A          152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT  231 (430)
T ss_dssp             CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred             cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence            488999976          567777775555555699999888 9999999999999999874321      34567899


Q ss_pred             CCEeEEEEee-CCCEEEEeeCCCcEEEEecCCC---ceeEEEe-cCCCCeEEEEccCCc-EEEEe-cCCeEEEEeCCC
Q psy6446          64 SGIKHVQFFK-NNTRLISCAEDKTVRLWDVSAS---AEVQKLE-FGAVPNSLEISRDGT-TITVT-HGSCVTFLDANS  134 (134)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~-~~~~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~t  134 (134)
                      ..|.+++|+| ++..+++++.|+.|++||++++   +....+. +...+.+++|+|++. +++++ .||.|++||+++
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            9999999999 6788999999999999999976   4555553 678899999999987 56555 689999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=3.4e-24  Score=135.51  Aligned_cols=133  Identities=13%  Similarity=0.241  Sum_probs=104.9

Q ss_pred             CeeEeecCC-CceeeEE-------eeCCCceeeEEEccCC-cEEEEecCCCeEEEEECCCCCCC---CeEEeCCCC----
Q psy6446           1 MGTVWDAVS-GEELHSF-------QHPHIVKSSVHFATDS-YRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSS----   64 (134)
Q Consensus         1 ~i~v~d~~~-~~~~~~~-------~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~----   64 (134)
                      +|++||+.+ ++.+..+       ..+...+.+++|+|++ +.|++++.||.|++||++++...   ...+.+|..    
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  278 (447)
T 3dw8_B          199 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNR  278 (447)
T ss_dssp             EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----C
T ss_pred             eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccc
Confidence            478999984 4445433       3444556669999998 99999999999999999986541   456777775    


Q ss_pred             --------CEeEEEEeeCCCEEEEeeCCCcEEEEecCC-CceeEEEecCCC----------------CeEEEEccCCcEE
Q psy6446          65 --------GIKHVQFFKNNTRLISCAEDKTVRLWDVSA-SAEVQKLEFGAV----------------PNSLEISRDGTTI  119 (134)
Q Consensus        65 --------~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~----------------v~~~~~~~~~~~l  119 (134)
                              .|.+++|+|++++|++++. +.|++||+++ ++++..+.....                +..++|+|++.+|
T Consensus       279 ~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l  357 (447)
T 3dw8_B          279 SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV  357 (447)
T ss_dssp             CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred             ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence                    8999999999999999999 9999999997 777777764332                2349999999998


Q ss_pred             EEe-cCCeEEEEeCCC
Q psy6446         120 TVT-HGSCVTFLDANS  134 (134)
Q Consensus       120 ~~~-~~~~i~i~d~~t  134 (134)
                      +++ .||.|++||+++
T Consensus       358 ~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          358 MTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             EEECSTTEEEEEETTT
T ss_pred             EEeccCCEEEEEEcCC
Confidence            876 689999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=1.8e-24  Score=132.05  Aligned_cols=117  Identities=19%  Similarity=0.303  Sum_probs=94.9

Q ss_pred             eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEee--CCCEEEEeeCCCcEEEEecC
Q psy6446          17 QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFK--NNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~   93 (134)
                      .++...+.+++|+|++++|++|+.|+.|++||+.++.. ....+.+|.+.|.+++|+|  +++.|++++.|+.|++||++
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            34555566699999999999999999999999987532 3356789999999999986  48999999999999999998


Q ss_pred             CCc--eeEEEe-cCCCCeEEEEccC--CcEEEEe-cCCeEEEEeCC
Q psy6446          94 ASA--EVQKLE-FGAVPNSLEISRD--GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        94 ~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++  ....+. +...|.+++|+|+  +.+++++ .|+.|++||++
T Consensus        90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~  135 (316)
T 3bg1_A           90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT  135 (316)
T ss_dssp             SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred             CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence            874  334443 6788999999998  6777776 68999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=2.9e-23  Score=132.04  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=112.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEc--cCCcEEEEecCCCeEEEEECCCCCCC----------------------C
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFA--TDSYRLATGSNDKNIRIYDLNKPDAE----------------------P   56 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~----------------------~   56 (134)
                      +|++||+.+++++..+.++...+.+++|+  ++++.+++++.|+.+++||+.+....                      .
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            58999999999999998666666669998  47799999999999999999875432                      2


Q ss_pred             eEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          57 TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ..+.+|...+.++  +++++.+++++.|+.|++||+++++.+..+. +...+.+++|+|++.+++++ .|+.|++||+++
T Consensus       264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            3456788888776  6789999999999999999999999888876 57889999999999988876 689999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=2.9e-23  Score=127.14  Aligned_cols=133  Identities=18%  Similarity=0.254  Sum_probs=111.9

Q ss_pred             CeeEeecCCCceeeE-EeeCCCceeeEEEccCC--cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHS-FQHPHIVKSSVHFATDS--YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      .+++||......... ...+...+.+++|++++  ..+++++.|+.|++||+++... ...+.+|.+.|.+++|+|++++
T Consensus       151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~  229 (340)
T 4aow_A          151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSL  229 (340)
T ss_dssp             CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCE
Confidence            368999876554333 23444555558998754  5688999999999999998654 4567899999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      |++++.|+.|++||+++.+++..+.....+.++.|+|++.+++++.|+.|++||+++
T Consensus       230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          230 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             EEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence            999999999999999999999999888899999999999998888999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-23  Score=128.59  Aligned_cols=119  Identities=14%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             eEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC
Q psy6446          14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS   93 (134)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   93 (134)
                      ..+.++...+.+++|+|++++|++++.||.|++||+.++.. ...+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34566666666799999999999999999999999988654 45678899999999999999999999999999999999


Q ss_pred             CCceeEEEecCCCCeEEEEccCCcEEEEe-cC-----CeEEEEeCC
Q psy6446          94 ASAEVQKLEFGAVPNSLEISRDGTTITVT-HG-----SCVTFLDAN  133 (134)
Q Consensus        94 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~  133 (134)
                      +++....+.+...+.+++|+|++.+++++ .+     +.|.+||++
T Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~  150 (369)
T 3zwl_B          105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE  150 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred             CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence            99999999989999999999999988875 56     899999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.9e-25  Score=140.68  Aligned_cols=125  Identities=12%  Similarity=0.086  Sum_probs=96.8

Q ss_pred             eEeecCCCce--eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC-----CEeEEEEeeCC
Q psy6446           3 TVWDAVSGEE--LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS-----GIKHVQFFKNN   75 (134)
Q Consensus         3 ~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~   75 (134)
                      ..|++.+++.  +..+.+ ...+.+++|+|+|+.|++++.||.+++||...   ....+. |..     .+.+++|+|||
T Consensus        67 ~~~~~~~~~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           67 NKLDFELAQQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             CTTTTSCCCSSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred             ceEEEEeCCCceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC
Confidence            4455554443  333345 45555599999999999999999999999544   333344 554     59999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCce-------eEEEe-----cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAE-------VQKLE-----FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~-------~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++|++++.||+|++||+.++..       +..+.     |...|.+++|+|+| +++++.|+.|++||+.
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~  210 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence            9999999999999999998753       45543     24589999999999 6666789999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.3e-23  Score=135.30  Aligned_cols=128  Identities=14%  Similarity=0.221  Sum_probs=101.6

Q ss_pred             CeeEeecCCCceeeEEeeCC----CceeeEEEccCCcEEEEecCCCeEEEEECCCCCC------CCeEE----eCCCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPH----IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA------EPTVY----RGHSSGI   66 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~------~~~~~----~~~~~~v   66 (134)
                      +|++||.++  ++..+.+..    ..+.+++|+|+|++|++|+.||.|++||+..+..      ....+    .+|...|
T Consensus       108 ~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          108 NVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             CEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred             cEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence            478999543  556666332    1366699999999999999999999999988642      12344    5677899


Q ss_pred             eEEEEeeCCCEEEEeeCCCcEEEEecCCCcee---EEEe--cCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          67 KHVQFFKNNTRLISCAEDKTVRLWDVSASAEV---QKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      .+++|+|++  +++++.|+.+++||+.++...   ..+.  +...|.+++|+  +..++++.+++|++||+.+
T Consensus       186 ~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~  254 (588)
T 2j04_A          186 THIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKN  254 (588)
T ss_dssp             EEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTT
T ss_pred             EEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCC
Confidence            999999999  889999999999999887742   3453  45789999999  6888887789999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=1.2e-23  Score=141.20  Aligned_cols=134  Identities=17%  Similarity=0.242  Sum_probs=117.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (134)
                      +|++||+.+++.+..+..+...+.+++|+|+++.|++++.||.|++|++.++......+.+|...|.+++|+| +++.++
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            4789999999999999855566666999999999999999999999999886555567789999999999999 889999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec--CCCCeEEEEcc--CCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISR--DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.|+.|++||+.+++....+..  ...+.+++|+|  ++.+++++ .+|.|++||+++
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            999999999999988887776663  37899999999  88888876 679999999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=4.2e-24  Score=133.88  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=102.1

Q ss_pred             CeeEeecCCCceeeE-----EeeCCCceeeEEEcc--------CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEe
Q psy6446           1 MGTVWDAVSGEELHS-----FQHPHIVKSSVHFAT--------DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIK   67 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~--------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~   67 (134)
                      +|++||..+++....     +.++...+.+++|+|        ++++|++++.|+.|++||+.+..+. .....|...+.
T Consensus       112 ~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~-~~~~~~~~~v~  190 (393)
T 4gq1_A          112 TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI-LAGYPLSSPGI  190 (393)
T ss_dssp             CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE-EEEEECSSCEE
T ss_pred             cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee-eeecCCCCCcE
Confidence            689999998876432     345556666699998        7899999999999999999875544 34567889999


Q ss_pred             EEEEeeCC-CEEEEeeCCCcEEEEecCCCceeEEEe--------------------------cCCCCeEEEEc-cCCcEE
Q psy6446          68 HVQFFKNN-TRLISCAEDKTVRLWDVSASAEVQKLE--------------------------FGAVPNSLEIS-RDGTTI  119 (134)
Q Consensus        68 ~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------------~~~~v~~~~~~-~~~~~l  119 (134)
                      +++|+|++ ..|++++.|+.|++||+++++......                          +...+.++.|+ |++..+
T Consensus       191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l  270 (393)
T 4gq1_A          191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI  270 (393)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred             EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence            99999977 479999999999999998876433221                          23467788886 788888


Q ss_pred             EEe-cCCeEEEEeCC
Q psy6446         120 TVT-HGSCVTFLDAN  133 (134)
Q Consensus       120 ~~~-~~~~i~i~d~~  133 (134)
                      +++ .|+.+++||+.
T Consensus       271 ~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          271 LAMCKSGAWLRWNLF  285 (393)
T ss_dssp             EEECTTSEEEEEEC-
T ss_pred             EEEeCCCCEEEEECc
Confidence            876 68999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=5.9e-23  Score=129.54  Aligned_cols=130  Identities=21%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|+|||..+++++..++  .+...+.+++|+|+|++|++|+.||.|++||+.+++. ...+.+|...+.++++  ++..+
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-~~~~~~h~~~v~~~s~--~~~~l  202 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVGSLSW--NSYIL  202 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEE--ETTEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-EEEEeCCCCceEEEee--CCCEE
Confidence            58999999999988776  3445567799999999999999999999999998654 4567899999988776  57899


Q ss_pred             EEeeCCCcEEEEecCCCce-eEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAE-VQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++.|+.+.+||...... ...+. +...+..+.++|++.+++++ .|+.+++||..
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            9999999999999886543 34443 57889999999999998875 78999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.3e-23  Score=137.39  Aligned_cols=134  Identities=13%  Similarity=0.305  Sum_probs=110.9

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEee--
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFK--   73 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~--   73 (134)
                      +|++||+.+++  .+..+..+...+.+++|+|+  ++.+++|+.||.|++||++... .....+.+|...|.+++|+|  
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            58999999887  56666655566666999998  9999999999999999998763 23445678999999999999  


Q ss_pred             -----------CCCEEEEeeCCCcEEEEecCCCce----eEEEe-cCCCCeEEEEccC---CcEEEEe-cCCeEEEEeCC
Q psy6446          74 -----------NNTRLISCAEDKTVRLWDVSASAE----VQKLE-FGAVPNSLEISRD---GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        74 -----------~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~-~~~~v~~~~~~~~---~~~l~~~-~~~~i~i~d~~  133 (134)
                                 +++.+++++.||.|++||++++..    ...+. +...|.+++|+|+   +.+++++ .||.|++||++
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       589999999999999999987743    33333 5788999999999   8888875 68999999986


Q ss_pred             C
Q psy6446         134 S  134 (134)
Q Consensus       134 t  134 (134)
                      +
T Consensus       238 ~  238 (753)
T 3jro_A          238 N  238 (753)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=2.3e-22  Score=122.18  Aligned_cols=131  Identities=20%  Similarity=0.281  Sum_probs=108.3

Q ss_pred             CeeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|+|||+.+++++..++  ++...+.+++|+|++++|++|+.|+.|++|++.+++. ...+.+|...+.++.  +++..+
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~~~~~h~~~~~~~~--~~~~~l  122 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVGSLS--WNSYIL  122 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEE--EETTEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EEEecCccceEEEee--cCCCEE
Confidence            58999999999998886  3455566799999999999999999999999998664 456788888776654  567899


Q ss_pred             EEeeCCCcEEEEecCCCcee-EEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEV-QKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++++.++.+.+|+....... ..+. +...+..+.+++++.+++++ .|+.|++||+++
T Consensus       123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            99999999999998876443 3333 57788999999999988876 789999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=2e-23  Score=130.34  Aligned_cols=133  Identities=18%  Similarity=0.252  Sum_probs=112.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEE------------eCCCCCEeE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVY------------RGHSSGIKH   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------------~~~~~~v~~   68 (134)
                      +++|++..++....+..+...+.+++|+| ++++|++++.||.|++||+.+........            .+|...|.+
T Consensus        25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  104 (408)
T 4a11_B           25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET  104 (408)
T ss_dssp             HHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred             ceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence            56788887888877886666666799999 99999999999999999999866543322            258999999


Q ss_pred             EEEee-CCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCC---cEEEEe-cCCeEEEEeCCC
Q psy6446          69 VQFFK-NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG---TTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        69 ~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++|+| +++.+++++.|+.|++||+.+++....+.....+.++.++|.+   .+++++ .++.|.+||+++
T Consensus       105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B          105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             EEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             EEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            99999 7789999999999999999999999999888899999999855   377765 789999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.5e-23  Score=131.08  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             eeEeecCCCceee----EEeeCCCceeeEEEccC---CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELH----SFQHPHIVKSSVHFATD---SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~   74 (134)
                      |++|++.+++...    .+.++...+.+++|+|+   +++|++++.|+.|++||+.++......+.+|...|.+++|+ +
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-K  251 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-C
Confidence            6788888776543    55655556666999999   99999999999999999988765544456899999999999 9


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEec--------------------------CCCCeEEEEccCCcEEEEe--cCCe
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLEF--------------------------GAVPNSLEISRDGTTITVT--HGSC  126 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------------------------~~~v~~~~~~~~~~~l~~~--~~~~  126 (134)
                      +++|++++.|+.|++||+.+++.+..+..                          ...+.+++|+|++++++++  .++.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            99999999999999999999998877752                          2457899999999988875  5799


Q ss_pred             EEEEeC
Q psy6446         127 VTFLDA  132 (134)
Q Consensus       127 i~i~d~  132 (134)
                      |++||+
T Consensus       332 i~iw~~  337 (450)
T 2vdu_B          332 IIILEM  337 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-22  Score=122.06  Aligned_cols=128  Identities=17%  Similarity=0.378  Sum_probs=107.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||  .++.+..+..+...+.++.|.| +++.+++++.|+.+++||...   ....+.. |...+.+++|+|++. +
T Consensus       125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~  198 (313)
T 3odt_A          125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-F  198 (313)
T ss_dssp             EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-E
T ss_pred             CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-E
Confidence            378999  6777878875555555588888 999999999999999999432   2334555 889999999999988 9


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++++.|+.|++||+++++....+. +...+.+++|+|++.+++++.|+.|++||+++
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence            999999999999999999888887 67889999999999766667899999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=1.3e-23  Score=128.86  Aligned_cols=130  Identities=14%  Similarity=0.128  Sum_probs=107.0

Q ss_pred             CeeEeecCCCc---eeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEEC-CCCCCCCeEEeC--CCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGE---ELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDL-NKPDAEPTVYRG--HSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~-~~~~~~~~~~~~--~~~~v~~~~~~~   73 (134)
                      +|++||+.+++   ....+..+...+.+++|+|+++ .|++++.||.|++|++ .++..  ..+.+  |...|.+++|+|
T Consensus        34 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~  111 (342)
T 1yfq_A           34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG  111 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET
T ss_pred             eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC
Confidence            47899998877   2333334444555599999999 9999999999999999 76542  45677  999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCC---------CceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSA---------SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                       ++.+++++.|+.|++||+++         +++...+.+...+.+++|+|++ +++++.++.|++||+++
T Consensus       112 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          112 -DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             -TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSC
T ss_pred             -CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCc
Confidence             99999999999999999987         6666666678889999999988 55556889999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.1e-23  Score=131.11  Aligned_cols=133  Identities=10%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             CeeEeecC---CCceeeEEee------------CCCceeeEE--EccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC--
Q psy6446           1 MGTVWDAV---SGEELHSFQH------------PHIVKSSVH--FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG--   61 (134)
Q Consensus         1 ~i~v~d~~---~~~~~~~~~~------------~~~~~~~~~--~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--   61 (134)
                      +|++||+.   +++.+..+..            ....+.++.  ++++++.|++++.|+.|++||++++... ..+.+  
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~  212 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL-QIIENSP  212 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE-EEEECCG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-EEEccCC
Confidence            47899984   5555444331            222333355  5678999999999999999999986543 45666  


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEcc----CCcEEEEe-cCCeEEEEeCCC
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISR----DGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~----~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |.+.|.+++|+|+++++++++.|+.|++||+++++++..+.  +...|.+++|+|    ++.+++++ .|+.|++||+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            88999999999999999999999999999999999888774  456789996664    57788876 679999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=2e-22  Score=140.31  Aligned_cols=133  Identities=29%  Similarity=0.550  Sum_probs=115.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEcc--CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFAT--DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++.+..+..+...+.++.|+|  ++..+++++.|+.|++||+.++.. ...+.+|.+.|.+++|+|+++.+
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEE
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEE
Confidence            489999999999999996666677799999  566899999999999999998654 45678999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEec--------------CCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEF--------------GAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++++.|+.|++||+.+++....+..              ...+.+++|+|+|..++++.++.+.+||+.+
T Consensus       759 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~  828 (1249)
T 3sfz_A          759 ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT  828 (1249)
T ss_dssp             EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT
T ss_pred             EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecC
Confidence            9999999999999999887776652              2267899999999999998899999999753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.5e-23  Score=137.66  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=108.7

Q ss_pred             CeeEeecC--CCceeeEEeeCCCceeeEEEccC--CcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeC-
Q psy6446           1 MGTVWDAV--SGEELHSFQHPHIVKSSVHFATD--SYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKN-   74 (134)
Q Consensus         1 ~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-   74 (134)
                      +|++||+.  +++.+..+..+...+.+++|+|+  ++.|++|+.||.|++||+.++. .....+.+|...|.+++|+|+ 
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~  111 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  111 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC
Confidence            48899998  55667777755666666999987  9999999999999999998754 133456789999999999998 


Q ss_pred             -CCEEEEeeCCCcEEEEecCCCcee---EEEecCCCCeEEEEcc-------------CCcEEEEe-cCCeEEEEeCC
Q psy6446          75 -NTRLISCAEDKTVRLWDVSASAEV---QKLEFGAVPNSLEISR-------------DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        75 -~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~v~~~~~~~-------------~~~~l~~~-~~~~i~i~d~~  133 (134)
                       ++.+++++.||.|++||++++...   ....+...+.+++|+|             ++.+++++ .||.|++||++
T Consensus       112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence             999999999999999999887332   2233678899999999             47777765 78999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=2.9e-22  Score=130.78  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=111.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCC---CEeEEEEeeC-CC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSS---GIKHVQFFKN-NT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~   76 (134)
                      |++||  +++.+..+..+...+.++.|+|+++ .+++++.|+.+++||+.+... ...+.+|..   .|.+++|+|+ ++
T Consensus       144 v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          144 FISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             EEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             EEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCC
Confidence            45566  6777888886666666799999997 899999999999999987553 356778988   9999999999 99


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEE-----ecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKL-----EFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++++++.|+.|++||+.+++....+     .+...+.+++|+ ++.+++++ .|+.|++||+++
T Consensus       221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            9999999999999999999999888     677889999999 99888875 689999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=8.6e-22  Score=122.87  Aligned_cols=131  Identities=13%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+.+++.+..+.++..+.. ++|+|+++.+ ++++.|+.|++||+.+++.. ..+..+ ..+.+++|+|+++.++
T Consensus        13 ~v~v~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-~~~~~~-~~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           13 NISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVI-ATVPAG-SSPQGVAVSPDGKQVY   89 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEE-EEEECS-SSEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCeEEEEeecCCCcce-EEECCCCCEEEEECCCCCeEEEEECCCCeEE-EEEECC-CCccceEECCCCCEEE
Confidence            479999999999999887766554 9999999877 67778999999999876543 344444 4899999999999886


Q ss_pred             E-eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-Ee-cCCeEEEEeCCC
Q psy6446          80 S-CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~-~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~d~~t  134 (134)
                      . ++.++.|++||+.+++....+.....+.+++|+|+++.++ ++ .++.|++||+++
T Consensus        90 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            5 4567999999999999988888888899999999998774 55 579999999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=5.8e-22  Score=125.05  Aligned_cols=131  Identities=22%  Similarity=0.353  Sum_probs=103.7

Q ss_pred             CeeEeecCCCce----eeEEeeCCCceeeEEEccCC-cEEEE--ecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEE----LHSFQHPHIVKSSVHFATDS-YRLAT--GSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~--~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      .+++||..+++.    +.....+...+.+++|+|.+ ..+++  |+.|+.|++||+.++... ..+. +...+.++.|+|
T Consensus       253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-~~~~-~~~~v~~~~~~~  330 (420)
T 4gga_A          253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-SAVD-AHSQVCSILWSP  330 (420)
T ss_dssp             CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-EEEE-CSSCEEEEEEET
T ss_pred             cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-eeec-cccceeeeeecC
Confidence            478999987653    34444445555669999955 45544  568999999999986644 3344 446799999999


Q ss_pred             CCCEEEEee--CCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          74 NNTRLISCA--EDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.+++++  .|+.|++||+.+++++..+. |...|.+++|+|+|.+|+++ .|++|++||+.
T Consensus       331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          331 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999988765  78999999999999998887 67899999999999988875 78999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=9.5e-23  Score=125.01  Aligned_cols=131  Identities=12%  Similarity=0.126  Sum_probs=106.8

Q ss_pred             CeeEeecCC---------CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC-CCCC-CeEEeCCCCCEeEE
Q psy6446           1 MGTVWDAVS---------GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-PDAE-PTVYRGHSSGIKHV   69 (134)
Q Consensus         1 ~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~-~~~~~~~~~~v~~~   69 (134)
                      +|++||+.+         ++++..+.+...+.. ++|+|++  +++++.|+.|++||+++ .... ......|...+.++
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT-MDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE-EEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             eEEEEcccccccccccccCCeeeEEeeCCceEE-EEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence            378999987         777777775555554 9999877  99999999999999987 5433 23445688899999


Q ss_pred             EEee-CCCEEEEeeCCCcEEEEecCCC------ceeEEEec-CC---------CCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          70 QFFK-NNTRLISCAEDKTVRLWDVSAS------AEVQKLEF-GA---------VPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        70 ~~~~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~-~~---------~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +|+| +++.+++++.|+.+++|++...      +....+.. ..         .+.+++|+|++++++++ .||.|++||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            9999 9999999999999999999876      66666653 22         89999999999988875 689999999


Q ss_pred             CCC
Q psy6446         132 ANS  134 (134)
Q Consensus       132 ~~t  134 (134)
                      +++
T Consensus       280 ~~~  282 (342)
T 1yfq_A          280 LQT  282 (342)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.90  E-value=2.3e-21  Score=117.74  Aligned_cols=131  Identities=19%  Similarity=0.303  Sum_probs=103.5

Q ss_pred             CeeEeecCCCcee----eEEeeCCCceeeEEEccCCcEE---EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAVSGEEL----HSFQHPHIVKSSVHFATDSYRL---ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l---~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~   73 (134)
                      +|++||+.+++..    .........+.++.++|++..+   ++++.++.|++|+.......  ....+...+..+.|+|
T Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--~~~~~~~~v~~~~~~~  250 (318)
T 4ggc_A          173 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHSQVCSILWSP  250 (318)
T ss_dssp             CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--EEEECSSCEEEEEEET
T ss_pred             ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--ccccceeeeeeeeecc
Confidence            5899999887642    2333344445559999865533   46788999999999875533  3455778899999999


Q ss_pred             CCCEEEEee--CCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          74 NNTRLISCA--EDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++.+++++  .|+.|++||+++++++..+. |...|.+++|+|++++|+++ .|++|++||+.
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999887654  78999999999999998887 67899999999999988875 78999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=2.6e-21  Score=122.48  Aligned_cols=128  Identities=22%  Similarity=0.418  Sum_probs=107.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC--eEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP--TVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++.+..+.++...+.++.|+  ++.+++++.||.|++||+.++....  ..+.+|...|.+++|  +++.+
T Consensus       194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  269 (435)
T 1p22_A          194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI  269 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEE
Confidence            58999999999999998666666668886  4699999999999999998865432  456789999999999  78999


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++++.|+.|++||+++++.+..+. +...+.++.++  +.+++++ .||.|++||+++
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999888887 56788888884  5666665 789999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.89  E-value=5e-22  Score=125.77  Aligned_cols=126  Identities=21%  Similarity=0.391  Sum_probs=104.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+..+...+.++.|  +++.+++|+.||.|++||++++.. ...+.+|...|.+++|  +++.+++
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEEEEEe--cCCEEEE
Confidence            4789999999999999966666666888  478999999999999999998654 4567889999999999  7899999


Q ss_pred             eeCCCcEEEEecCCCc---------eeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASA---------EVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~---------~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.||.|++||+.+++         +...+. +...|.+++|  ++.+++++ .||.|++||+.
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            9999999999997665         555554 5788999999  56677765 68999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=3.7e-21  Score=122.00  Aligned_cols=128  Identities=23%  Similarity=0.440  Sum_probs=106.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC---CCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG---HSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~   77 (134)
                      +|++||+.+++++..+..+...+.++.+  +++.+++++.||.|++||++++... ..+..   |...|.+++|+  +++
T Consensus       300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSE
T ss_pred             eEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-EEEccCCCCCCCEEEEEEC--CCE
Confidence            4889999999999888865555554665  5779999999999999999886543 44554   78899999994  689


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEE------ecCCCCeEEEEccCCcEEEEe-cCCe----EEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKL------EFGAVPNSLEISRDGTTITVT-HGSC----VTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~~~~----i~i~d~~  133 (134)
                      +++++.||.|++||+.+++.+..+      .+...+.+++|+|++.+++++ .||.    |.+||++
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            999999999999999999998888      246789999999999998876 5675    9999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.6e-22  Score=128.30  Aligned_cols=112  Identities=12%  Similarity=0.168  Sum_probs=92.6

Q ss_pred             ceeeEEEccCCcEEE----EecCCCeEEEEECCCC-----C--CC---CeEEeCCCCCEeEEEEeeC-CCEEEEeeCCCc
Q psy6446          22 VKSSVHFATDSYRLA----TGSNDKNIRIYDLNKP-----D--AE---PTVYRGHSSGIKHVQFFKN-NTRLISCAEDKT   86 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~----~~~~d~~v~i~~~~~~-----~--~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~   86 (134)
                      .+.+++|+|++++|+    +++.|+.|++||+.+.     .  ..   ...+.+|...|.+++|+|+ +..+++++.|+.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            355599999999999    7889999999998653     1  11   2334568999999999997 789999999999


Q ss_pred             EEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          87 VRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        87 i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      |++||++++....... +...+.+++|+|+|.+|+++ .||.|++||++
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            9999999886554333 56789999999999988876 68999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=1.3e-20  Score=117.60  Aligned_cols=131  Identities=13%  Similarity=0.247  Sum_probs=108.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE-
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-   78 (134)
                      +|++||+.+++.+..+.++..+.. ++|+|+++.|+ +++.++.|++||+.+++.. ..+. +...+.+++|+|+++.+ 
T Consensus        55 ~i~v~d~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~-~~~~-~~~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAGSSPQG-VAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-GTVK-TGKSPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEE-CSSSEEEEEECTTSSEEE
T ss_pred             eEEEEECCCCeEEEEEECCCCccc-eEECCCCCEEEEEECCCCEEEEEECCCCeEE-EEEe-CCCCcceEEECCCCCEEE
Confidence            478999999999998886665544 99999999875 5556799999999886543 3344 44578999999999987 


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-Ee-cCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VT-HGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~d~~t  134 (134)
                      ++++.++.|.+||+.+++....+.....+.+++|+|+++.++ ++ .++.|++||+++
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            678889999999999999988888777889999999998774 44 579999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=3.3e-21  Score=117.82  Aligned_cols=133  Identities=11%  Similarity=0.013  Sum_probs=95.9

Q ss_pred             CeeEeec-CCCceeeEEeeCCCceeeEEEcc---CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC---CCEeEEEEee
Q psy6446           1 MGTVWDA-VSGEELHSFQHPHIVKSSVHFAT---DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS---SGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---~~v~~~~~~~   73 (134)
                      +|++|++ .+|+.+..+..+......++|++   ++..|++++.|+.|++||+.+++.. ..+.+|.   ..+.+++|+|
T Consensus       158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l-~tL~g~~~~v~~v~~vafSp  236 (356)
T 2w18_A          158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL-KKMHIDDSYQASVCHKAYSE  236 (356)
T ss_dssp             EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE-EEEECCC---CCCEEEEEEE
T ss_pred             cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE-EEEcCCCcceeeeEEEEECC
Confidence            3788998 45887777775555555588888   7799999999999999999997654 4566543   3677889999


Q ss_pred             CCCEE------------EEeeCCCcEEEEecCCCceeEEEec----CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          74 NNTRL------------ISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.+            ++++.|+++++||..+++.+..+..    ......+..+.++.+++++ .|++|++||+++
T Consensus       237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCC
Confidence            99876            5577899999999999988766531    1111123333346677776 689999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=8.9e-21  Score=120.28  Aligned_cols=126  Identities=25%  Similarity=0.463  Sum_probs=88.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++.+..+..+...+.++.|+  ++.+++++.||.|++||+.++.. ...+.+|...+.++++  +++.+++
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~  254 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVS  254 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEE
Confidence            46777777777777777555555557664  45677777777888887776543 3456677777777777  6777778


Q ss_pred             eeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+++++....+. +...+.++.|  ++.+++++ .|+.|++||++
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            8888888888877777776665 4566777777  56666654 57888888875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=2.3e-21  Score=122.29  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             CeeEeecCCCceeeEEe-----eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQ-----HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      +|++||+.+++.+..+.     .+...+.+++|+++++.+++++.|+.|++||++++... ..+..|...+.+++|+|++
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~  223 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK-ATVDLTGKWSKILLYDPIR  223 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE-EEEECSSSSEEEEEEETTT
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE-EEEcCCCCCeeEEEEcCCC
Confidence            48999999998886432     34445666999999999999999999999999876543 4566888899999999999


Q ss_pred             CEEE-EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec---------CCeEEEEeCCC
Q psy6446          76 TRLI-SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH---------GSCVTFLDANS  134 (134)
Q Consensus        76 ~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~~i~i~d~~t  134 (134)
                      +.++ +++.++.|.+||+++++....+.....+.+++|+|++++++++.         |+.|++||+++
T Consensus       224 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          224 DLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             CEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence            9885 45579999999999998888777777789999999998877643         67999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=5.6e-22  Score=123.30  Aligned_cols=94  Identities=17%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             eeEeecCCCce----eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEE----LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +++||+..+..    ...+..+...+.+++|+|+|++|++|+.|+.|++||+++++.....+.+|...|++++|+||+++
T Consensus       247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence            56788766543    23444455556669999999999999999999999999876554445789999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCC
Q psy6446          78 LISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~   95 (134)
                      |++++.|++|+|||+...
T Consensus       327 laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          327 VASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTSEEEEEECCTT
T ss_pred             EEEEeCCCeEEEEEcCCC
Confidence            999999999999999643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=3.4e-22  Score=125.30  Aligned_cols=107  Identities=13%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             EccCCcEEEEecCCCeEEEEECCCCCCCC----eEEeCCCCCEeEEEEee--------CCCEEEEeeCCCcEEEEecCCC
Q psy6446          28 FATDSYRLATGSNDKNIRIYDLNKPDAEP----TVYRGHSSGIKHVQFFK--------NNTRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        28 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~   95 (134)
                      +.+++..|++++.|+.|++||.+++....    ..+.+|.+.|.+++|+|        ++++|++++.|++|++||+.++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            34466789999999999999998754321    23468999999999998        7899999999999999999877


Q ss_pred             ceeE-EEecCCCCeEEEEccCCc-EEEEe-cCCeEEEEeCCC
Q psy6446          96 AEVQ-KLEFGAVPNSLEISRDGT-TITVT-HGSCVTFLDANS  134 (134)
Q Consensus        96 ~~~~-~~~~~~~v~~~~~~~~~~-~l~~~-~~~~i~i~d~~t  134 (134)
                      .+.. .+.+...+.+++|+|++. +++++ .|+.|++||+++
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            6554 445788999999999885 56654 789999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.4e-21  Score=124.00  Aligned_cols=131  Identities=8%  Similarity=-0.018  Sum_probs=99.9

Q ss_pred             CeeEeecCCC--------ceee---EEeeCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeE
Q psy6446           1 MGTVWDAVSG--------EELH---SFQHPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH   68 (134)
Q Consensus         1 ~i~v~d~~~~--------~~~~---~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~   68 (134)
                      +|++||+.++        +++.   .+.++...+.+++|+|+ ++.|++++.||.|++||++++.. .....+|...+.+
T Consensus       119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~  197 (434)
T 2oit_A          119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTS  197 (434)
T ss_dssp             EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEE
T ss_pred             eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeE
Confidence            4789998755        3322   33334455566999997 88999999999999999988643 2345678889999


Q ss_pred             EEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC--------CCCeEEEEccCCcEEEEe--cCC------eEEEEeC
Q psy6446          69 VQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG--------AVPNSLEISRDGTTITVT--HGS------CVTFLDA  132 (134)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~--~~~------~i~i~d~  132 (134)
                      ++|+|++++|++++.|+.|++||.+ ++....+...        ..+.+++|++++.++++.  .+|      .+++||+
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            9999999999999999999999998 5555544321        267899999998887653  333      4889998


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      +
T Consensus       277 ~  277 (434)
T 2oit_A          277 P  277 (434)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=3.5e-20  Score=116.99  Aligned_cols=129  Identities=13%  Similarity=0.059  Sum_probs=100.0

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCC---eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDK---NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||+.. .....+. +... +.+++|+|+|+.|++++.++   .|++||+.+++.  ..+..|...+.+++|+|+++
T Consensus       160 ~i~i~d~~g-~~~~~l~~~~~~-v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          160 ELRVSDYDG-YNQFVVHRSPQP-LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             EEEEEETTS-CSCEEEEEESSC-EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSS
T ss_pred             eEEEEcCCC-CCCEEEeCCCCc-ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCC
Confidence            378999874 4455555 5544 44599999999999998875   999999998653  34667888999999999999


Q ss_pred             EEE-EeeCCC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CC--eEEEEeCC
Q psy6446          77 RLI-SCAEDK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GS--CVTFLDAN  133 (134)
Q Consensus        77 ~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~d~~  133 (134)
                      .|+ +++.++  .|.+||+.+++......+...+.+++|+|+|++|+.+.  ++  .|.+||+.
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            887 666555  49999999887654444567789999999999888653  34  78888875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=7.5e-20  Score=115.42  Aligned_cols=129  Identities=11%  Similarity=0.165  Sum_probs=107.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |++||+.+++.+..+.+...+.. ++|+|+++.+ ++++.++.+++||+.+++.. ..+ .+...+.+++|+|+++.+++
T Consensus       285 i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~-~~~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          285 LGIYSMDKEKLIDTIGPPGNKRH-IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSI-PVFDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             EEEEETTTTEEEEEEEEEECEEE-EEECSSTTEEEEEETTTTEEEEEETTTTEEE-EEE-ECSSSEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEeeccCCCCcce-EEECCCCCEEEEEecCCCEEEEEECCCCcEE-EEe-cCCCCCCeEEEcCCCCEEEE
Confidence            67999999998888776655555 9999999755 66689999999999875433 333 36778999999999998887


Q ss_pred             eeC---------------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-c-CCeEEEEeCC
Q psy6446          81 CAE---------------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-H-GSCVTFLDAN  133 (134)
Q Consensus        81 ~~~---------------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~~~i~i~d~~  133 (134)
                      ++.               ||.|.+||..+++....+.....+.+++|+|++++++++ . ++.|++|+++
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            776               569999999999998888887889999999999988764 4 8999999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=2e-19  Score=113.52  Aligned_cols=131  Identities=15%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +|++||+.+++......+.. .+.+++|+|+|+.|+ +++.++  .|++||+.++..  ..+..|...+..++|+|+++.
T Consensus       204 ~i~~~d~~tg~~~~l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~  280 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN  280 (415)
T ss_dssp             EEEEEETTTCCEEEEECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE
T ss_pred             EEEEEECCCCcEEEeecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCE
Confidence            37899999988765443544 455599999999887 666655  499999987543  456678889999999999999


Q ss_pred             EEEeeC-CC--cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cC---CeEEEEeCCC
Q psy6446          78 LISCAE-DK--TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG---SCVTFLDANS  134 (134)
Q Consensus        78 l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---~~i~i~d~~t  134 (134)
                      |+.++. ++  .|.+||+.+++......+...+.+++|+|+|++|+.+ .+   ..|.+||+++
T Consensus       281 l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          281 LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             EEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            987775 44  6788898887654433345677899999999988865 32   5899999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=1.7e-18  Score=105.94  Aligned_cols=132  Identities=8%  Similarity=0.071  Sum_probs=102.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|.+||..+++.+..+....... .++|+|+++.+++++. ++.|.+||+.++.........+..+..+++|+|++++++
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~   99 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV   99 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred             eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence            47899999999988887444444 5999999997666554 889999999886642344555555555599999999998


Q ss_pred             EeeCCC---cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE-e-cCCe-EEEEeCC
Q psy6446          80 SCAEDK---TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-T-HGSC-VTFLDAN  133 (134)
Q Consensus        80 ~~~~d~---~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~-i~i~d~~  133 (134)
                      +...++   .|.+||+.+++....+.....+.+++|+|+|+++++ + .++. |.+|++.
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A          100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            655553   899999999998888887777899999999985554 3 4477 9999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=2e-18  Score=105.47  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=103.8

Q ss_pred             CeeEeecCCCceeeEEeeCC---CceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCC----CCCEeEEEEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPH---IVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGH----SSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~v~~~~~~   72 (134)
                      +|.+||+.+++.+..+....   .+.. ++|+|+++.+ +++..++.|.+||+.+++........+    ...+..++|+
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s   90 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccc-eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence            47899999999998887544   3555 9999999766 555667899999998765432221122    1257789999


Q ss_pred             eCCCEEEEee------------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          73 KNNTRLISCA------------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        73 ~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      |++++++++.            .++.|.+||+.+++....+.....+.+++|+|++++++++ ++.|.+||+++
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~  163 (337)
T 1pby_B           91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEA  163 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTT
T ss_pred             CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCC
Confidence            9999988875            5789999999998888888777778899999999987777 68899999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=9.6e-18  Score=109.07  Aligned_cols=130  Identities=13%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEEC--CCCCCCCeEEeCCCCCEeEEEEee----C
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDL--NKPDAEPTVYRGHSSGIKHVQFFK----N   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~--~~~~~~~~~~~~~~~~v~~~~~~~----~   74 (134)
                      +|.+||..+++++..+..... ...++|+|+|++|++++.|+.|++||+  .+... ...+. +...+..++|+|    +
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-~~~i~-~g~~p~~va~sp~~~~d  236 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAEIK-IGIEARSVESSKFKGYE  236 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEEEE-CCSEEEEEEECCSTTCT
T ss_pred             eEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-EEEEe-cCCCcceEEeCCCcCCC
Confidence            478999999999999984333 445999999999999999999999999  55443 23344 456689999999    9


Q ss_pred             CCEEEEeeC-CCcEEEEecCCCceeEEEec------------CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          75 NTRLISCAE-DKTVRLWDVSASAEVQKLEF------------GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++++++++. +++|.+||..+++++..+..            ...+..+.++|++..++++  .++.|.+||+.
T Consensus       237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~  310 (543)
T 1nir_A          237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  310 (543)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred             CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence            999988874 89999999999998887763            1257889999988765543  56999999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.80  E-value=4.9e-18  Score=104.00  Aligned_cols=131  Identities=15%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             CeeEeecC-CC--ceeeEEeeCCCceeeEEEccCCcEEEEecCC-CeEEEEECC--CCCC-CCeEEeCCCCCEeEEEEee
Q psy6446           1 MGTVWDAV-SG--EELHSFQHPHIVKSSVHFATDSYRLATGSND-KNIRIYDLN--KPDA-EPTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         1 ~i~v~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~v~i~~~~--~~~~-~~~~~~~~~~~v~~~~~~~   73 (134)
                      +|++||+. ++  +.+..+.+...+.. ++|+|+++.|++++.+ +.+.+|++.  ++.. ....+..+ ..+..++|+|
T Consensus        16 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~   93 (343)
T 1ri6_A           16 QIHVWNLNHEGALTLTQVVDVPGQVQP-MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDH   93 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCCCC-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECT
T ss_pred             eEEEEEECCCCcEEEeeeEecCCCCce-EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcC
Confidence            37899985 34  33444555555555 9999999988888776 899999997  3321 11223333 3789999999


Q ss_pred             CCCEEEEeeC-CCcEEEEecC---CCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          74 NNTRLISCAE-DKTVRLWDVS---ASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +++++++++. ++.|.+||+.   ..+....+.....+.+++|+|++++++++  .++.|.+||+.
T Consensus        94 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           94 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            9998876654 7889999994   33444455555678999999999877754  57999999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=3e-17  Score=100.95  Aligned_cols=130  Identities=14%  Similarity=0.083  Sum_probs=103.1

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe----CCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR----GHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~   76 (134)
                      |.+||..+++.+..+. ....... +.|+|+++.+++++.++.+.+||+.+++... .+.    ++...+..++|+|+++
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGKMSTG-LALDSEGKRLYTTNADGELITIDTADNKILS-RKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCTTCCC-CEEETTTTEEEEECTTSEEEEEETTTTEEEE-EEECCCSSSCCCEEEEEEETTTT
T ss_pred             EEEEcCCCCceEEEecCCCCccce-EEECCCCCEEEEEcCCCeEEEEECCCCeEEE-EEEcCCCCCCcccceEEECCCCC
Confidence            7899999999988887 4433444 9999999999999999999999998765432 232    2455688899999999


Q ss_pred             EEEEeeC-CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE-e-cCCeEEEEeCCC
Q psy6446          77 RLISCAE-DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-T-HGSCVTFLDANS  134 (134)
Q Consensus        77 ~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~i~d~~t  134 (134)
                      .++.++. ++.|.+||..+++....+..... ..++|+|+++++++ . .++.|.+||+.+
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            8776655 58999999999998887776543 67999999986654 4 479999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=1.8e-17  Score=101.33  Aligned_cols=133  Identities=11%  Similarity=0.153  Sum_probs=102.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCe-EEEEECCCCCCCCe---EEeCCCCCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKN-IRIYDLNKPDAEPT---VYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~-v~i~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~   75 (134)
                      +|.+||+.+++.+..+........ ++|+|+|++++++ ..++. +.+|++........   ........+..++|+|++
T Consensus       109 ~i~v~d~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIPYDAVG-IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             EEEEEETTTTEEEEEEECCTTEEE-EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             cEEEEECCCCCeEEEEECCCCccc-eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            378999999999888876555554 9999999866555 45577 99999886443211   112344568999999999


Q ss_pred             CEEEEe-eCCCcEEEEecCCCce---eEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCCC
Q psy6446          76 TRLISC-AEDKTVRLWDVSASAE---VQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~-~~d~~i~~~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      ++++.+ ..++.|.+||+.+++.   ...+.....+..++|+|+|++++++  .++.|.+||+++
T Consensus       188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            976554 4688999999999888   7777777888999999999977654  358899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=4.1e-18  Score=102.19  Aligned_cols=128  Identities=12%  Similarity=0.107  Sum_probs=94.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC-CCCCCeEEeCC-CCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-PDAEPTVYRGH-SSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l   78 (134)
                      +|++||+.+++......+...+.. ++|+|++++|++++ ++.|++||+.+ +... .....+ ...+.+++|+|+++++
T Consensus        23 ~i~~~d~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           23 SIEIFNIRTRKMRVVWQTPELFEA-PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-KVDTGFATICNNDHGISPDGALY   99 (297)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCEE-EEECTTSSEEEEEE-TTEEEEEESSSCCSCE-ECCCTTCCCBCSCCEECTTSSEE
T ss_pred             eEEEEeCCCCceeeeccCCcceEe-eEECCCCCEEEEEc-CCeEEEEeCCCCCCce-EeccccccccccceEECCCCCEE
Confidence            478999999888766666655555 99999999999986 78999999987 5432 333344 3678899999999999


Q ss_pred             EEee--CCCcEEEE--ecCCCceeEEEecCCCCeEEEEccCCcEEE-Ee-cCCeEEEEeC
Q psy6446          79 ISCA--EDKTVRLW--DVSASAEVQKLEFGAVPNSLEISRDGTTIT-VT-HGSCVTFLDA  132 (134)
Q Consensus        79 ~~~~--~d~~i~~~--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~d~  132 (134)
                      ++++  .++...+|  +..+++ ...+.....+..++|+|+++.++ ++ .++.+.+|++
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence            9888  33444555  444444 34444455688899999999877 33 5788888875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=4.8e-17  Score=100.09  Aligned_cols=131  Identities=8%  Similarity=0.062  Sum_probs=104.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCC---------CEeEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSS---------GIKHVQF   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~---------~v~~~~~   71 (134)
                      |.+||..+++.+..+........ ++|+|+++.++ +...++.|.+||..+++.. ..+..+..         .+..+.|
T Consensus        71 v~~~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (353)
T 3vgz_A           71 VYRLDPVTLEVTQAIHNDLKPFG-ATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVA  148 (353)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCS-EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEE
T ss_pred             EEEEcCCCCeEEEEEecCCCcce-EEECCCCCEEEEEecCCCEEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEE
Confidence            78999999999998886666666 99999998655 4566799999999886543 33333322         2788999


Q ss_pred             eeCCCEEEEee--CCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          72 FKNNTRLISCA--EDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        72 ~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +|+++.++.++  .++.|.+||..+++....+. ....+.+++|+|++++++++ .++.|.+||+++
T Consensus       149 s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~  215 (353)
T 3vgz_A          149 DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD  215 (353)
T ss_dssp             ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred             CCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            99999887665  47889999999999888887 55668899999999987765 679999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.77  E-value=1.8e-17  Score=110.80  Aligned_cols=119  Identities=13%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             CeeEeecCCCceeeEEeeCCC------------------------ceeeEEEccCCcEEEEecCCCeEEEEECCCCC--C
Q psy6446           1 MGTVWDAVSGEELHSFQHPHI------------------------VKSSVHFATDSYRLATGSNDKNIRIYDLNKPD--A   54 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~--~   54 (134)
                      +|++||+.+++....+.+...                        .+..++|+|||+.|++++. +.|++||+.++.  .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence            378999999988777763321                        1445999999999999886 899999998762  2


Q ss_pred             CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCC-----------------CeEEEEccCCc
Q psy6446          55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAV-----------------PNSLEISRDGT  117 (134)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~  117 (134)
                      . ..+..+...+..++|+|||++|+.++. +.|.+||+.+++..........                 +..+.|+|||+
T Consensus       144 ~-~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~  221 (741)
T 2ecf_A          144 V-RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS  221 (741)
T ss_dssp             C-CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS
T ss_pred             E-EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC
Confidence            2 335667788999999999999998874 5899999988776544332221                 47899999999


Q ss_pred             EEEEe
Q psy6446         118 TITVT  122 (134)
Q Consensus       118 ~l~~~  122 (134)
                      +|+.+
T Consensus       222 ~l~~~  226 (741)
T 2ecf_A          222 AIAYA  226 (741)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            88765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=2.3e-17  Score=101.30  Aligned_cols=130  Identities=12%  Similarity=0.111  Sum_probs=96.8

Q ss_pred             CeeEeecCCCceeeEEeeCC--CceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEe-CC-----CCCEeEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPH--IVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYR-GH-----SSGIKHVQF   71 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~-~~-----~~~v~~~~~   71 (134)
                      +|.+||+.+++.+..+....  .... ++|+|+++.++ +...++.|.+||+.+++... .+. .+     ...+..++|
T Consensus        22 ~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-~~~~~~~~~~~~~~~~~~~~   99 (349)
T 1jmx_B           22 NLHVVDVASDTVYKSCVMPDKFGPGT-AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANLSSVPGEVGRSMYSFAI   99 (349)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEESCCSTTEEEECSSCEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCce-eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-EEEcccccccccccccceEE
Confidence            47899999999988887544  4555 99999998664 55678999999998765332 232 22     223788999


Q ss_pred             eeCCCEEEEeeCC------------CcEEEEecCCCc---eeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          72 FKNNTRLISCAED------------KTVRLWDVSASA---EVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        72 ~~~~~~l~~~~~d------------~~i~~~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      +|+++++++++.+            +.|.+||+.+++   ..........+.+++|+|+|+ ++++ ++.|.+||+++
T Consensus       100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~  175 (349)
T 1jmx_B          100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKT  175 (349)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-SSSEEEECTTT
T ss_pred             CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc-cCcEEEEeCCC
Confidence            9999999988865            899999998843   344555566788999999999 4443 33499999753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=1.1e-17  Score=111.53  Aligned_cols=119  Identities=10%  Similarity=0.046  Sum_probs=91.3

Q ss_pred             CeeEeecCCCceeeEEeeCCC---ceeeEEEccCCcEEEEecCC---------CeEEEEECCCCCCCCeEEe---CCCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHI---VKSSVHFATDSYRLATGSND---------KNIRIYDLNKPDAEPTVYR---GHSSG   65 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~---~~~~~   65 (134)
                      +|++||+.+++....+.++..   .+..++|+|||++|++++.+         +.+++||+.++..  ..+.   +|...
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~  115 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAK  115 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCC
T ss_pred             CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCcccccc
Confidence            589999999988877775443   24459999999999988764         7888999988653  2222   34445


Q ss_pred             EeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-CCC------------------CeEEEEccCCcEEEEe
Q psy6446          66 IKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-GAV------------------PNSLEISRDGTTITVT  122 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~l~~~  122 (134)
                      +..++|+|||+.|+.++. +.|.+||..+++....... ...                  +.+++|+|||+.|+.+
T Consensus       116 ~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          116 LQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             CSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            889999999999998876 7899999998877655543 222                  2789999999988865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=4.1e-17  Score=99.69  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             EEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-
Q psy6446          44 IRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-  122 (134)
Q Consensus        44 v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  122 (134)
                      +.+||+.+++.....+..+...+..++|+|++++++++  ++.|.+||+.+++....+.....+.+++|+|++++++++ 
T Consensus       221 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred             eEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc
Confidence            56778776543322334555678899999999999887  689999999999988888777788999999999977765 


Q ss_pred             cCCeEEEEeCCC
Q psy6446         123 HGSCVTFLDANS  134 (134)
Q Consensus       123 ~~~~i~i~d~~t  134 (134)
                      .++.|.+||+++
T Consensus       299 ~~~~i~v~d~~~  310 (337)
T 1pby_B          299 ALGDLAAYDAET  310 (337)
T ss_dssp             BSSEEEEEETTT
T ss_pred             CCCcEEEEECcC
Confidence            679999999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=1.3e-17  Score=109.03  Aligned_cols=125  Identities=10%  Similarity=-0.034  Sum_probs=99.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC----CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND----KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +.+||+.+++......++.   ..+.|+|||+.|++++.+    +.|++||+.++..  ..+..|.+.+..++|+|||+.
T Consensus       134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCE
T ss_pred             ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCE
Confidence            3589999888766665554   449999999999988776    7899999987653  356788888999999999999


Q ss_pred             EEEeeCCC--cEEEEecCCCceeEEEe-cCCCCeEEE--------EccCCcEEEEe-cCCeEEEEeC
Q psy6446          78 LISCAEDK--TVRLWDVSASAEVQKLE-FGAVPNSLE--------ISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~--~i~~~d~~~~~~~~~~~-~~~~v~~~~--------~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      |+++..++  .|.+||+.+++.. .+. +...+..+.        |+|||.+++++ .++.+++|++
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            99888888  8999999988876 333 334455566        99999766665 6899999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=9.9e-18  Score=111.53  Aligned_cols=131  Identities=18%  Similarity=0.097  Sum_probs=96.8

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCC-----CCCCCeEEeCCCCC----------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNK-----PDAEPTVYRGHSSG----------   65 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~-----~~~~~~~~~~~~~~----------   65 (134)
                      +|++||+.+++......+...+.. ++|+|+|+.|+++ .++.|++|++.+     +... .....+...          
T Consensus       102 ~i~~~d~~~~~~~~l~~~~~~~~~-~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDTNEETAS-LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             EEEEEETTTTEEEEEECCTTCCTT-CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGG
T ss_pred             EEEEEECCCCceEEccCCcccccC-CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhh
Confidence            478999998877665555555555 9999999999985 679999999987     5432 212222222          


Q ss_pred             ----EeEEEEeeCCCEEEEee---------------------------------CCCcEEEEecCCCceeEEEe---cCC
Q psy6446          66 ----IKHVQFFKNNTRLISCA---------------------------------EDKTVRLWDVSASAEVQKLE---FGA  105 (134)
Q Consensus        66 ----v~~~~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~~---~~~  105 (134)
                          +..+.|+||+++|++++                                 .+..|.+||+.+++......   +..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence                48999999999999887                                 34679999998887654332   335


Q ss_pred             CCeEEEEccCCcEEEEe-cCC-----eEEEEeCCC
Q psy6446         106 VPNSLEISRDGTTITVT-HGS-----CVTFLDANS  134 (134)
Q Consensus       106 ~v~~~~~~~~~~~l~~~-~~~-----~i~i~d~~t  134 (134)
                      .+..++|+|||+.++.+ .++     .|.+||+.+
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence            67899999999988764 343     899999764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=6.8e-18  Score=112.53  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=88.4

Q ss_pred             CeeEeecCCCceeeEEeeCCC---ceeeEEEccCCcEEEEecC---------CCeEEEEECCCCCCCC-eEEeCCCCCEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPHI---VKSSVHFATDSYRLATGSN---------DKNIRIYDLNKPDAEP-TVYRGHSSGIK   67 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~-~~~~~~~~~v~   67 (134)
                      +|++||+.+++....+.++..   .+.+++|+|||++|++++.         ++.+++||+.++.... ..+   ...+.
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~  113 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ  113 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC
T ss_pred             CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc
Confidence            588999999998877765433   1344999999999998876         6899999998765310 111   25688


Q ss_pred             EEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC-------------------CCCeEEEEccCCcEEEEe
Q psy6446          68 HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-------------------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~  122 (134)
                      .++|+|||+.|+.+. ++.|++||+.+++........                   ....+++|+|||+.|+.+
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~  186 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA  186 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence            999999999999875 779999999887765432211                   112589999999998865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.76  E-value=1.5e-16  Score=103.58  Aligned_cols=132  Identities=9%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             CeeEeec--CCCceeeEEeeCCCceeeEEEcc----CCcEEEEecC-CCeEEEEECCCCCCCCeEEeC----------C-
Q psy6446           1 MGTVWDA--VSGEELHSFQHPHIVKSSVHFAT----DSYRLATGSN-DKNIRIYDLNKPDAEPTVYRG----------H-   62 (134)
Q Consensus         1 ~i~v~d~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~----------~-   62 (134)
                      +|++||+  .+++++..+........ ++|+|    +|+++++++. ++.|.+||..+.+.. ..+..          | 
T Consensus       201 ~V~v~D~~~~t~~~~~~i~~g~~p~~-va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-~~i~~~g~~~~~~~~~~  278 (543)
T 1nir_A          201 RIDMIDLWAKEPTKVAEIKIGIEARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHP  278 (543)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEES
T ss_pred             eEEEEECcCCCCcEEEEEecCCCcce-EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-eeecccCcccCcccccc
Confidence            4789999  88999988886666655 99999    9999999874 899999999876543 33332          2 


Q ss_pred             CCCEeEEEEeeCCCE-EEEeeCCCcEEEEecCCCceeE--EEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCCC
Q psy6446          63 SSGIKHVQFFKNNTR-LISCAEDKTVRLWDVSASAEVQ--KLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      ...+..+.++|++.. +++...++.|.+||+.+.+.+.  .+.....+..+.|+|+|++++++  .+++|.+||+++
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            236889999997665 5567778999999998876544  45556678899999999977654  469999999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=1.6e-16  Score=95.28  Aligned_cols=129  Identities=9%  Similarity=0.003  Sum_probs=90.7

Q ss_pred             eeEeecCC-CceeeEEeeC-CCceeeEEEccCCcEEEEec--CCCeEEE--EECCCCCCCCeEEeCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVS-GEELHSFQHP-HIVKSSVHFATDSYRLATGS--NDKNIRI--YDLNKPDAEPTVYRGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~d~~v~i--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   75 (134)
                      |++||+.+ ++........ ...+.+++|+|+++.|++++  .++...+  ++..++.  ...+.. ...+..++|+|++
T Consensus        64 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~spdg  140 (297)
T 2ojh_A           64 LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTK-NLPSYWHGWSPDG  140 (297)
T ss_dssp             EEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCS-SSSEEEEEECTTS
T ss_pred             EEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeec-CCCccceEECCCC
Confidence            78999998 7776655533 34455599999999999988  3344455  4544433  333333 3458999999999


Q ss_pred             CEEE-EeeCCCcEEEEecC--CCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          76 TRLI-SCAEDKTVRLWDVS--ASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~-~~~~d~~i~~~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +.++ ++..++.+.+|++.  +++......+...+.+++|+|+++.++.+  .++.+.+|++.
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            9887 77788989999864  34443333356678999999999987754  36788888753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=1.1e-15  Score=93.78  Aligned_cols=126  Identities=10%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             eeEeecCCCce---eeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC----------------
Q psy6446           2 GTVWDAVSGEE---LHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH----------------   62 (134)
Q Consensus         2 i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----------------   62 (134)
                      |.+||+.+++.   +..+.++..+.. ++|+|+++ +++++.  .+.+||+.+++.. ..+..+                
T Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~-l~~~~~--~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T 1jmx_B          127 LEVFSTADGLEAKPVRTFPMPRQVYL-MRAADDGS-LYVAGP--DIYKMDVKTGKYT-VALPLRNWNRKGYSAPDVLYFW  201 (349)
T ss_dssp             EEEEEGGGGGGBCCSEEEECCSSCCC-EEECTTSC-EEEESS--SEEEECTTTCCEE-EEECSTTCCCTTBCCCBCCCCC
T ss_pred             EEEEECCCccccceeeeccCCCcccc-eeECCCCc-EEEccC--cEEEEeCCCCcee-ccccccccCCccccCccceeee
Confidence            78999988543   344555554444 99999999 666544  4999998775422 111111                


Q ss_pred             ----------------------------------------------------CCCEeEEEEee-CCCEEEEeeCCCcEEE
Q psy6446          63 ----------------------------------------------------SSGIKHVQFFK-NNTRLISCAEDKTVRL   89 (134)
Q Consensus        63 ----------------------------------------------------~~~v~~~~~~~-~~~~l~~~~~d~~i~~   89 (134)
                                                                          ...+..++++| ++++++++  ++.|.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~  279 (349)
T 1jmx_B          202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK  279 (349)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred             cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence                                                                11345677889 99998887  789999


Q ss_pred             EecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          90 WDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        90 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ||+.+++....+.....+.+++|+|++++++++ .++.|.+||+++
T Consensus       280 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          280 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            999999988888777778899999999877665 579999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.71  E-value=2e-16  Score=105.80  Aligned_cols=110  Identities=18%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             eeeEEEccCCcEEEEecC-CC-----eEEEEECCCCCCCCeEEeCCCC------------------------CEeEEEEe
Q psy6446          23 KSSVHFATDSYRLATGSN-DK-----NIRIYDLNKPDAEPTVYRGHSS------------------------GIKHVQFF   72 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~-d~-----~v~i~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~   72 (134)
                      +..++|+|||+.|++++. |+     .|++||+.++... .....+..                        .+..++|+
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-EEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-EccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            445999999999999988 88     8999999886532 33333322                        37899999


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCC---ceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSAS---AEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ||+++|++++. +.|.+||+.++   +......+...+..++|+|||++|+.+.++.|++||+.+
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~  181 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLAS  181 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence            99999998886 89999999987   544433455778999999999999988888999999853

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=2e-15  Score=92.38  Aligned_cols=131  Identities=15%  Similarity=0.215  Sum_probs=90.5

Q ss_pred             eeEeecC---CCceeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCCe----EEeC-CCCCEeEEEEe
Q psy6446           2 GTVWDAV---SGEELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEPT----VYRG-HSSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~----~~~~-~~~~v~~~~~~   72 (134)
                      |.+||+.   +++.+..+.....+.. ++|+|+++.+++++ .++.+.+||+.+......    .... ....+..++|+
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHS-ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  186 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCC-CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             EEEEECCCCccccccccccCCCCceE-EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence            7899984   3444555554444444 99999999888776 889999999986232211    1222 34578899999


Q ss_pred             eCCCEEEEee-CCCcEEEEecCC--Cce--eEEEe-c------CCCCeEEEEccCCcEEEE-e-cCCeEEEEeCC
Q psy6446          73 KNNTRLISCA-EDKTVRLWDVSA--SAE--VQKLE-F------GAVPNSLEISRDGTTITV-T-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~-~d~~i~~~d~~~--~~~--~~~~~-~------~~~v~~~~~~~~~~~l~~-~-~~~~i~i~d~~  133 (134)
                      |++++++.++ .++.+.+||+..  ++.  ..... .      ...+..++|+|+++++++ + .++.|.+||++
T Consensus       187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            9999776554 789999999953  332  22222 1      123457999999987774 4 57999999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.70  E-value=5.8e-15  Score=90.93  Aligned_cols=131  Identities=15%  Similarity=0.135  Sum_probs=90.0

Q ss_pred             eeEeecCCCce--eeEEe-eCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCCe--EEeC---------CCCCE
Q psy6446           2 GTVWDAVSGEE--LHSFQ-HPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEPT--VYRG---------HSSGI   66 (134)
Q Consensus         2 i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~--~~~~---------~~~~v   66 (134)
                      |++||+.+++.  +..+. +...+.. ++|+|++++|++++ .++.+.+|++........  ....         ....+
T Consensus        65 v~~~~~~~g~~~~~~~~~~~~~~p~~-~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~  143 (347)
T 3hfq_A           65 IAAWQIDGQTAHKLNTVVAPGTPPAY-VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI  143 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEEESCCCSE-EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred             EEEEEecCCcEEEeeeeecCCCCCEE-EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence            78999977663  33433 4444445 99999999888877 679999999964322211  1111         11247


Q ss_pred             eEEEEeeCCCEEEEeeCCCcEEEEecC-CCceeEE--Ee--cCCCCeEEEEccCCcEEEE-e-cCCeEEEEeCC
Q psy6446          67 KHVQFFKNNTRLISCAEDKTVRLWDVS-ASAEVQK--LE--FGAVPNSLEISRDGTTITV-T-HGSCVTFLDAN  133 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~-~-~~~~i~i~d~~  133 (134)
                      .+++|+|+++.+++...++.+.+|++. +++....  +.  ....+..++|+|+|+++++ + .++.|.+|++.
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            889999999955666678899999998 4543322  12  2345778999999997665 3 46899999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.70  E-value=5.6e-16  Score=107.17  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=102.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEE-EEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIR-IYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~-i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+|+..+++......+....+..+.|+ +|+.|+.++.++.+. +|++..+..  ..+.+|...+..++|+|++++|++
T Consensus       319 i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~  395 (1045)
T 1k32_A          319 AFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVV  395 (1045)
T ss_dssp             EEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEE
T ss_pred             EEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEE
Confidence            6788887776554323444244559999 999999988888888 899876542  233477788999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEE-ecCCCCeEEEEccCCcEEEEe-cC----------CeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVT-HG----------SCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~----------~~i~i~d~~t  134 (134)
                      ++.++.+++||+.+++..... .+...+..++|+|||++++.+ .+          +.|++||+.+
T Consensus       396 ~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            999999999999999887776 356778999999999988764 32          4899999863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.69  E-value=7.5e-16  Score=106.52  Aligned_cols=128  Identities=10%  Similarity=0.008  Sum_probs=96.4

Q ss_pred             ee-EeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GT-VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +. +||+.+++..... .+...+..++|+|+|+.|++++.++.+++||+.++.. .....+|.+.+..++|+||+++|++
T Consensus       360 l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          360 FLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             EEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             eEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEE
Confidence            44 7788776654333 4434455599999999999999999999999987653 3445588889999999999999988


Q ss_pred             eeCCC----------cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDK----------TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~----------~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++.++          .|++||+.+++......+...+..++|+|+|++++.. .++....|+
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             EecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            77644          8999999987733322345667889999999988765 445555565

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=2.6e-16  Score=104.88  Aligned_cols=130  Identities=12%  Similarity=0.042  Sum_probs=92.9

Q ss_pred             eeEeecCCCceeeEEee---CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC-------------
Q psy6446           2 GTVWDAVSGEELHSFQH---PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG-------------   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-------------   65 (134)
                      +++||+.+++. ..+..   ....+..++|+|||+.|+.++. +.|++|++.++... .....+...             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~-~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE-EEECCCBTTTEEEEECCHHHHH
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE-EEecCCCCCceECcccceeEEE
Confidence            56999998876 33332   2222444999999999999876 79999999876543 333333332             


Q ss_pred             -----EeEEEEeeCCCEEEEeeCCC----------------------------------cEEEEecCCCceeEEEec---
Q psy6446          66 -----IKHVQFFKNNTRLISCAEDK----------------------------------TVRLWDVSASAEVQKLEF---  103 (134)
Q Consensus        66 -----v~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~~~~~~~---  103 (134)
                           +..++|+||++.|+.++.++                                  .|.+||+.+++....+..   
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                 37899999999999876543                                  789999988876454442   


Q ss_pred             ----CCCCeEEEEccCCcEEEEe-c----CCeEEEEeCCC
Q psy6446         104 ----GAVPNSLEISRDGTTITVT-H----GSCVTFLDANS  134 (134)
Q Consensus       104 ----~~~v~~~~~~~~~~~l~~~-~----~~~i~i~d~~t  134 (134)
                          ...+..++|+|||++++.. .    +..|.+||+.+
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                3457889999999988654 2    25899999753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.67  E-value=5.1e-15  Score=91.19  Aligned_cols=129  Identities=9%  Similarity=0.085  Sum_probs=87.8

Q ss_pred             eEeecCCCceee--EEeeCCCceeeEEEccCCcEEEEecC---CCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCC
Q psy6446           3 TVWDAVSGEELH--SFQHPHIVKSSVHFATDSYRLATGSN---DKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         3 ~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      ..||..+++...  ...+...... ++|+|+|+ |++++.   ++.|.+|++..+.. .......+...+..++|+|+++
T Consensus        21 ~~~d~~tg~~~~~~~~~~~~~p~~-~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           21 GTLDTTAKTLTNDGLLAATQNPTY-LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             EEEETTTTEEEEEEEEEECSCCCC-EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred             EEEcCCCCeEEEeeeeeccCCcce-EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence            344555666543  2334555555 99999999 555543   68999999965432 1222344667889999999999


Q ss_pred             EEEEee-CCCcEEEEecCC-Cc--eeEEEecC----------CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          77 RLISCA-EDKTVRLWDVSA-SA--EVQKLEFG----------AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~-~d~~i~~~d~~~-~~--~~~~~~~~----------~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +|++++ .++.+.+|++.. +.  .+..+...          ..+.+++|+|+|+++++. .++.|.+||+.
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            888877 678999999963 33  23333221          136789999999955555 46899999975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.67  E-value=1.4e-14  Score=89.74  Aligned_cols=110  Identities=11%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             eeeEEEccCCcEEEEec-CCCeEEEEECCCCCCC-CeEE---eCCCCCEeEEEEeeCCCEEEEeeCC--CcEEEEecC--
Q psy6446          23 KSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAE-PTVY---RGHSSGIKHVQFFKNNTRLISCAED--KTVRLWDVS--   93 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d~~--   93 (134)
                      ...++|+|+|+++++++ .++.|.+|++.++... ....   ..+......++|+|++++|+++..+  +.+.+|++.  
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~  292 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET  292 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence            34499999999887766 6899999999854311 1111   1233456899999999998766654  889999985  


Q ss_pred             CCc--eeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          94 ASA--EVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        94 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      +++  .+..+.....+..++|+|+|++|+++  .++.|.+|++
T Consensus       293 ~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          293 NGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             TCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            344  33334445578899999999988765  3589999654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.66  E-value=7.5e-16  Score=102.59  Aligned_cols=132  Identities=9%  Similarity=0.007  Sum_probs=93.3

Q ss_pred             CeeEeecCC-----CceeeEEeeCCC-c-------------eeeEEEccCCcEEEEec----------------------
Q psy6446           1 MGTVWDAVS-----GEELHSFQHPHI-V-------------KSSVHFATDSYRLATGS----------------------   39 (134)
Q Consensus         1 ~i~v~d~~~-----~~~~~~~~~~~~-~-------------~~~~~~~~~~~~l~~~~----------------------   39 (134)
                      +|++||+.+     ++.......... +             ..++.|+|||+.|++++                      
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence            378999988     776654442222 2             24599999999999887                      


Q ss_pred             -----------CCCeEEEEECCCCCCCCeE-EeCCCCCEeEEEEeeCCCEEEEeeCCC-----cEEEEecCCCceeEEEe
Q psy6446          40 -----------NDKNIRIYDLNKPDAEPTV-YRGHSSGIKHVQFFKNNTRLISCAEDK-----TVRLWDVSASAEVQKLE  102 (134)
Q Consensus        40 -----------~d~~v~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~  102 (134)
                                 .+..|++||+.++...... ...|...+..++|+||++.|++++.++     .|.+||..+++....+.
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence                       4467999999875422111 124567789999999999999877665     89999999884333332


Q ss_pred             -c--CC---CCeEEEEcc--CCcEEEEe-cCCeEEEEeC
Q psy6446         103 -F--GA---VPNSLEISR--DGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       103 -~--~~---~v~~~~~~~--~~~~l~~~-~~~~i~i~d~  132 (134)
                       .  ..   .+..+.|+|  +|++++++ .++.+++|++
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~  340 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLY  340 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEE
T ss_pred             EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEE
Confidence             2  21   246789999  99988776 5677777764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=1.4e-14  Score=90.08  Aligned_cols=132  Identities=12%  Similarity=0.116  Sum_probs=92.4

Q ss_pred             CeeEeecC-CCceeeEEeeC--CCceeeEEEccCCcE--EEEec-------------CCCeEEEEECCCCCCCCeEEe--
Q psy6446           1 MGTVWDAV-SGEELHSFQHP--HIVKSSVHFATDSYR--LATGS-------------NDKNIRIYDLNKPDAEPTVYR--   60 (134)
Q Consensus         1 ~i~v~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~--l~~~~-------------~d~~v~i~~~~~~~~~~~~~~--   60 (134)
                      +|.+||+. +++......+.  ..... ++|+|+|+.  +++++             .++.+.+|++...........  
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~  139 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIGGHPRA-NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY  139 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSSGGG-GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEeeEeecCCCCcc-EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence            37899987 78765544422  33344 899999994  45554             688999999974332222222  


Q ss_pred             --CCCCCEeEEEEeeCCCEEEEeeC-CCcEEEEecC-CCcee--EEEe---cCCCCeEEEEccCCcEEEEe--cCCeEEE
Q psy6446          61 --GHSSGIKHVQFFKNNTRLISCAE-DKTVRLWDVS-ASAEV--QKLE---FGAVPNSLEISRDGTTITVT--HGSCVTF  129 (134)
Q Consensus        61 --~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~--~~~~i~i  129 (134)
                        .+...+..++|+|++++++++.. ++.|.+||+. +++..  ..+.   +...+..++|+|+|++++++  .++.|.+
T Consensus       140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence              24567999999999998887654 6789999998 66643  2233   14568899999999988764  3589999


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      |++.
T Consensus       220 ~~~~  223 (365)
T 1jof_A          220 YVID  223 (365)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.64  E-value=5.1e-14  Score=87.19  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=79.2

Q ss_pred             eeEEEccCCcEEEEe-cCCCeEEEEECCCCCC------C------CeEEeCCCCCEeEEEEeeCCCEEEEee-CCCcEEE
Q psy6446          24 SSVHFATDSYRLATG-SNDKNIRIYDLNKPDA------E------PTVYRGHSSGIKHVQFFKNNTRLISCA-EDKTVRL   89 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~   89 (134)
                      .+++|+|+|++++++ ..++.+.+|++.....      +      ..........+..++|+|++++++.++ .++.|.+
T Consensus       158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence            459999999976555 4578999999876442      1      111233455688999999999887776 5889999


Q ss_pred             EecCCCceeE--EEec----CCCCeEEEEccCCcEEEEe-c--CCeEEEEeCC
Q psy6446          90 WDVSASAEVQ--KLEF----GAVPNSLEISRDGTTITVT-H--GSCVTFLDAN  133 (134)
Q Consensus        90 ~d~~~~~~~~--~~~~----~~~v~~~~~~~~~~~l~~~-~--~~~i~i~d~~  133 (134)
                      ||+.+++...  .+..    ......++|+|+|++++++ .  ++.|.+|++.
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            9998765432  2221    1335699999999988654 3  4899999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=2.3e-15  Score=98.48  Aligned_cols=124  Identities=10%  Similarity=0.010  Sum_probs=93.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEE--------E
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQ--------F   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~--------~   71 (134)
                      |++||+.+++.. .+..+......++|+|||+.|+++..++  .|++||+.++...  .+.+|...+..+.        |
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEE
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeE
Confidence            789999888866 4443334445599999999999888888  8999999876543  5566766677677        9


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cC---CeEEEEeCC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG---SCVTFLDAN  133 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---~~i~i~d~~  133 (134)
                      +||+..+++++.++.+++|++  ++...  .....+.+++|+ +++++++. .+   ..+.+||..
T Consensus       254 spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          254 LPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             CTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            999988889999999999999  55443  234567889999 88877754 33   467777754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=101.67  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC---CEeEEEEeeCCCEEEEeeC---------CCcEEEEecC
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS---GIKHVQFFKNNTRLISCAE---------DKTVRLWDVS   93 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~   93 (134)
                      +.|+|+++++++ +.|+.|++||+.++... ..+..+..   .+..++|+|||++|+.++.         ++.+++||+.
T Consensus        21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           21 PNWISGQEYLHQ-SADNNIVLYNIETGQSY-TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CEESSSSEEEEE-CTTSCEEEEESSSCCEE-EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             cEECCCCeEEEE-cCCCCEEEEEcCCCcEE-EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            899999965554 46899999999886532 33333332   3899999999999998776         6899999999


Q ss_pred             CCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          94 ASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        94 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +++..........+..++|+|||+.|+.+.++.|++||+.
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~  138 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP  138 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred             CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCC
Confidence            8876211112356889999999999998889999999975

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=8e-15  Score=98.41  Aligned_cols=119  Identities=15%  Similarity=0.066  Sum_probs=88.1

Q ss_pred             CeeEeecCCCceeeEEeeCC-Cce----eeEEEccCCcEEEEecCC---------CeEEEEECCCCCCCCeEEeCCCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPH-IVK----SSVHFATDSYRLATGSND---------KNIRIYDLNKPDAEPTVYRGHSSGI   66 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~v   66 (134)
                      +|++||+.+++....+.++. ...    ..+.|||||+.|+.++.+         +.+.+||+.++...  .+..+.+.+
T Consensus        37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--~l~~~~~~~  114 (740)
T 4a5s_A           37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--TEERIPNNT  114 (740)
T ss_dssp             EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--CSSCCCTTE
T ss_pred             cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--EcccCCCcc
Confidence            47899999999877777433 221    227889999999998875         56779999986532  245677889


Q ss_pred             eEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC-------------------CCCeEEEEccCCcEEEEe
Q psy6446          67 KHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-------------------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~  122 (134)
                      ...+|||||+.|+.+. ++.|.+||..+++..+.....                   .....+.|||||+.|+..
T Consensus       115 ~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             EEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             eeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            9999999999998874 678999999887754322111                   112358999999988864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=6.2e-13  Score=82.66  Aligned_cols=132  Identities=9%  Similarity=0.099  Sum_probs=89.8

Q ss_pred             eeEeecC-CCceeeEEee----CCCceeeEEEccCCcEEEEec-CCCeEEEEECC-CCCCCC-eEEe--CCCCCEeEEEE
Q psy6446           2 GTVWDAV-SGEELHSFQH----PHIVKSSVHFATDSYRLATGS-NDKNIRIYDLN-KPDAEP-TVYR--GHSSGIKHVQF   71 (134)
Q Consensus         2 i~v~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~-~~~~~~-~~~~--~~~~~v~~~~~   71 (134)
                      +.+|++. +++....+..    .......++|+|+|++++++. .++.|++|++. +++... ....  .+...+..++|
T Consensus       121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~  200 (365)
T 1jof_A          121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred             EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence            6789987 4665544431    233455599999999888765 46799999998 543211 1222  23567899999


Q ss_pred             eeCCCEEEEeeC-CCcEEEEecC--CCceeE---EEec-C------C-------CCeEEE-EccCCcEEEEe-c-CC---
Q psy6446          72 FKNNTRLISCAE-DKTVRLWDVS--ASAEVQ---KLEF-G------A-------VPNSLE-ISRDGTTITVT-H-GS---  125 (134)
Q Consensus        72 ~~~~~~l~~~~~-d~~i~~~d~~--~~~~~~---~~~~-~------~-------~v~~~~-~~~~~~~l~~~-~-~~---  125 (134)
                      +|+++++++++. ++.+.+|++.  +++...   .+.. .      .       .+..++ |+|||++++++ . ++   
T Consensus       201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~  280 (365)
T 1jof_A          201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence            999999887765 6789999765  455422   2221 1      1       367899 99999987764 2 23   


Q ss_pred             --eEEEEeCC
Q psy6446         126 --CVTFLDAN  133 (134)
Q Consensus       126 --~i~i~d~~  133 (134)
                        .|.+|++.
T Consensus       281 ~~~i~v~~~~  290 (365)
T 1jof_A          281 QGYIAGFKLR  290 (365)
T ss_dssp             CCEEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence              89999874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=5.4e-13  Score=87.32  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=76.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECC--CCCCCCeEEeCCCCCEeEEEEe----eC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN--KPDAEPTVYRGHSSGIKHVQFF----KN   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~--~~~~~~~~~~~~~~~v~~~~~~----~~   74 (134)
                      +|.++|..+++.+..+........ +.|+|+|+++++++.++.|.+||+.  +.+.. ..+.. ......++|+    ||
T Consensus       178 ~V~viD~~t~~v~~~i~~g~~p~~-v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-~~i~~-G~~P~~ia~s~~~~pD  254 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-AEIKI-GSEARSIETSKMEGWE  254 (567)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEE-EEEEC-CSEEEEEEECCSTTCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCccc-eEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-EEEec-CCCCceeEEccccCCC
Confidence            378999999999999885544444 9999999999999999999999996  44332 33332 3456899999    69


Q ss_pred             CCEEEEeeC-CCcEEEEecCCCceeEEEe
Q psy6446          75 NTRLISCAE-DKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        75 ~~~l~~~~~-d~~i~~~d~~~~~~~~~~~  102 (134)
                      +++++++.. ++.+.++|..+.+.+..+.
T Consensus       255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          255 DKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            999887665 5889999988877766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.58  E-value=1.2e-14  Score=97.60  Aligned_cols=106  Identities=8%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC-----EeEEEEeeCCCEEEEeeCC---------CcEEEE
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG-----IKHVQFFKNNTRLISCAED---------KTVRLW   90 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~~~   90 (134)
                      .+.|+|++++++++  |+.|++||+.++... ..+.+|...     ...++||||+++|+.++.+         +.+.+|
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEE-EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceE-EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            39999999888886  899999999987643 445555432     2448899999999988775         556799


Q ss_pred             ecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          91 DVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |+.+++......+...+..++|||||+.|+.+.++.|++||+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~  140 (740)
T 4a5s_A           98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (740)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             ECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECC
Confidence            9999886554334667899999999999998889999999975

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.58  E-value=2.8e-12  Score=78.79  Aligned_cols=132  Identities=13%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE---------eCCCCCEeEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY---------RGHSSGIKHVQ   70 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---------~~~~~~v~~~~   70 (134)
                      +|.+||..+++.+..+. ..-.....++++|+|+.+++...++.|++|+..........+         .++-.....++
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia  149 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVA  149 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEE
Confidence            37899998898876665 222233449999999988888889999999986542233333         23344689999


Q ss_pred             Eee-CCCEEEEee-CCCcEEEEecCCCceeEEEecC-----------CCCeEEEEccC-CcEEEEe-cCCeEEEEeCC
Q psy6446          71 FFK-NNTRLISCA-EDKTVRLWDVSASAEVQKLEFG-----------AVPNSLEISRD-GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        71 ~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++| +++.+++.+ .++.|.+|| .+++....+...           ..+..++++|+ +.++++. .++.|.+||.+
T Consensus       150 ~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          150 VEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             ECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            999 788777776 689999999 567766666421           23689999998 6666665 56899999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.58  E-value=8.4e-13  Score=79.36  Aligned_cols=128  Identities=13%  Similarity=0.157  Sum_probs=93.3

Q ss_pred             eeEeecCCCceeeEEee--CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC--CCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQH--PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH--SSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~   77 (134)
                      |.+||. +++.+..+..  .......++++++++.+++...++.|++|+... . ....+..+  ...+..++++++++.
T Consensus       144 i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l  220 (286)
T 1q7f_A          144 VIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEI  220 (286)
T ss_dssp             EEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCE
T ss_pred             EEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCE
Confidence            677885 4666666642  222344599999999888878889999999754 2 22233322  357899999999988


Q ss_pred             EEEeeCCC-cEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          78 LISCAEDK-TVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~-~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +++...++ .|.+||. +++.+..+...   ..+.+++++|+|++++++.++.|++|++.
T Consensus       221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             EEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            88887776 9999995 56666666532   23678999999987777778999999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.57  E-value=1.4e-13  Score=91.26  Aligned_cols=113  Identities=10%  Similarity=0.026  Sum_probs=81.8

Q ss_pred             CCceeeEEEccCCcEEEEecCC----------CeEEEEECCCCC----CCCeEEe-CCCCCEeEEEEeeCCCEEEEeeCC
Q psy6446          20 HIVKSSVHFATDSYRLATGSND----------KNIRIYDLNKPD----AEPTVYR-GHSSGIKHVQFFKNNTRLISCAED   84 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d----------~~v~i~~~~~~~----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d   84 (134)
                      ......++|+|||+.|++++.+          ..|++|++.+..    .....+. .+...+..++|+|||++|+..+.+
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence            3344559999999999988876          589999998721    1223344 555678889999999999877754


Q ss_pred             --------CcEEEEecC-CC---ceeEEEec-CCCCeEEEEccCCcEEEEe-cCC--eEEEEeC
Q psy6446          85 --------KTVRLWDVS-AS---AEVQKLEF-GAVPNSLEISRDGTTITVT-HGS--CVTFLDA  132 (134)
Q Consensus        85 --------~~i~~~d~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~--~i~i~d~  132 (134)
                              ..|.+||+. ++   +....... ...+..+.|+|||++++++ .++  .|.+||+
T Consensus       209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             TTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred             CCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence                    379999998 56   33333333 5678899999999966665 455  7777775

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.56  E-value=2.5e-13  Score=84.68  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=95.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEE--EeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ--FFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~   79 (134)
                      |.+||+.+++......++........|+|+++.|+.++.++.+++||+.+++.. .....+...+....  ++|+++.++
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN-VVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce-eeeechhhcccccceeECCCCCeec
Confidence            678898888877666555444423889999999999999999999999986533 34444555454444  478888887


Q ss_pred             Ee----------------------eCCCcEEEEecCCCceeEEEecCCCCeEEEEcc-CCcEEEEe-c------CCeEEE
Q psy6446          80 SC----------------------AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITVT-H------GSCVTF  129 (134)
Q Consensus        80 ~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~------~~~i~i  129 (134)
                      ..                      ..+..|.+||+.+++..........+..+.|+| +|+.++.. .      ...|.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL  220 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence            42                      234679999999988766666677789999999 99887754 2      237888


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      +|+.
T Consensus       221 ~d~~  224 (388)
T 3pe7_A          221 INED  224 (388)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            8764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.55  E-value=5.2e-13  Score=83.08  Aligned_cols=65  Identities=14%  Similarity=0.217  Sum_probs=53.6

Q ss_pred             EEEeeCCCEEEEeeC-----------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          69 VQFFKNNTRLISCAE-----------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        69 ~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++|+|+++.++....           .+.|.+||..+++.+..+.... +.+++|+|+|++++++.++.|.+||+++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t  334 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQ  334 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCC
Confidence            577777777765432           3479999999999999998777 9999999999988877559999999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=1.8e-13  Score=85.65  Aligned_cols=107  Identities=9%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          15 SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      ....+.  +..++|  +++.|+++ .++.|++||+.+... ......|...+.++.+.+.  .++++..||.+.+||+.+
T Consensus        84 ~~~lp~--V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A           84 EKEIPD--VIFVCF--HGDQVLVS-TRNALYSLDLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT  155 (388)
T ss_dssp             EEECTT--EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT
T ss_pred             EeeCCC--eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC
Confidence            344555  445999  89999999 889999999987653 3445677788888877654  388899999999999998


Q ss_pred             CceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          95 SAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        95 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++...   ....|.+++|+|+| ..+...||.+++|+..
T Consensus       156 ~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          156 KSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWR  190 (388)
T ss_dssp             CCEEE---EEESEEEEEECSSE-EEEEETTSCEEEEEEE
T ss_pred             Ccccc---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCC
Confidence            77643   34589999999999 4455688999999754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=1.8e-13  Score=85.16  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeC------CCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRG------HSSG   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~------~~~~   65 (134)
                      |.+||..+++.+..+...... . ++|+|+++++++++          .++.|.+||..+.+.. ..+..      +...
T Consensus        33 v~v~D~~t~~~~~~i~~g~~p-~-i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~-~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           33 VHVYDYTNGKFLGMVPTAFNG-H-VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE-KEISLPPKRVQGLNY  109 (361)
T ss_dssp             EEEEETTTCCEEEEEECCEEE-E-EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE-EEEEECTTBCCBCCC
T ss_pred             EEEEECCCCeEEEEecCCCCC-c-eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE-EEEEcCccccccCCC
Confidence            679999999998888744444 5 99999999999886          3567999999875533 22221      2345


Q ss_pred             EeEEEEeeCCCEEEEeeC--CCcEEEEecCCCceeEE-EecCCCCeEEEEccCC--cEEEEecCCeEEEEeC
Q psy6446          66 IKHVQFFKNNTRLISCAE--DKTVRLWDVSASAEVQK-LEFGAVPNSLEISRDG--TTITVTHGSCVTFLDA  132 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~~~~~i~i~d~  132 (134)
                      ...++++|++++|+++..  ++.|.+||+.+++.+.. +..... ..+.+.|++  .+++.+.||.+.+++.
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~  180 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINL  180 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence            678999999999988764  57899999999988776 443222 224455554  2233345566555554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.52  E-value=1.6e-13  Score=90.96  Aligned_cols=128  Identities=8%  Similarity=0.013  Sum_probs=87.6

Q ss_pred             eeEeecCC------CceeeEE-eeCCCceeeEEEccCCcEEEEecCC--------CeEEEEECC-CCC--CCCeEEeCCC
Q psy6446           2 GTVWDAVS------GEELHSF-QHPHIVKSSVHFATDSYRLATGSND--------KNIRIYDLN-KPD--AEPTVYRGHS   63 (134)
Q Consensus         2 i~v~d~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d--------~~v~i~~~~-~~~--~~~~~~~~~~   63 (134)
                      |++||+.+      ++..... .+.. ....+.|+|||+.|+.++.+        ..|++||+. ++.  .......++.
T Consensus       163 i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             EEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             EEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            78899887      5554333 3333 34449999999999877644        379999998 441  2333344557


Q ss_pred             CCEeEEEEeeCCCEEEEeeCCC--cEEEEecCCCceeEEEecCCC---------CeEEEEccCCcEEEEecCCeEEEE
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDK--TVRLWDVSASAEVQKLEFGAV---------PNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      ..+..+.|+||++.++++..++  .|.+||..+++..........         +..++|+|++++++++..+.+++|
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG  319 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence            8899999999999777777787  566777656654433322211         467899999998887633777777

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=4.7e-12  Score=76.11  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=93.4

Q ss_pred             eeEeecCCCceeeEEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+|| .+++.+..+.. .......++++|+++.+++...++.|.+|+... . ....+.  .+...+..++++++++.+
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEE
Confidence            67888 56777776652 223344599999999888878889999999653 2 222332  344568999999999887


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEe-cCC-eEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT-HGS-CVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~~~-~i~i~d~~  133 (134)
                      ++...++.|.+||. +++.+..+...   ..+..++++++|.++++. .++ .|.+||..
T Consensus       179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            77778899999997 45555555432   467899999999888776 454 99999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=3.2e-13  Score=84.18  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCC------CeEEEEECCCCCCCCeEEeCCC--CCEeEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSND------KNIRIYDLNKPDAEPTVYRGHS--SGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~--~~v~~~~~~   72 (134)
                      |.+||+.+++......+...+.. +.|+| +|+.|+..+.+      ..+.+++..... . ..+..+.  ..+....|+
T Consensus       170 l~~~d~~~g~~~~l~~~~~~~~~-~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~s  246 (388)
T 3pe7_A          170 LMRVDLKTGESTVILQENQWLGH-PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-M-RKVKTHAEGESCTHEFWV  246 (388)
T ss_dssp             EEEEETTTCCEEEEEEESSCEEE-EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-C-EESCCCCTTEEEEEEEEC
T ss_pred             EEEEECCCCceEEeecCCccccc-cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-e-EEeeeCCCCcccccceEC
Confidence            67899998877665555555544 99999 99988876653      378888876543 2 2333333  247788999


Q ss_pred             eCCCEEEEeeC-CC----cEEEEecCCCceeEEEecCC------CCeEEEEccCCcEEEEe----------cCCeEEEEe
Q psy6446          73 KNNTRLISCAE-DK----TVRLWDVSASAEVQKLEFGA------VPNSLEISRDGTTITVT----------HGSCVTFLD  131 (134)
Q Consensus        73 ~~~~~l~~~~~-d~----~i~~~d~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~----------~~~~i~i~d  131 (134)
                      ||++.|+..+. ++    .|.+||+.+++.........      ......|+|+|+.++..          .+..|.+||
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            99998765433 22    39999999887544333222      12334799999877642          346899999


Q ss_pred             CCC
Q psy6446         132 ANS  134 (134)
Q Consensus       132 ~~t  134 (134)
                      +++
T Consensus       327 ~~~  329 (388)
T 3pe7_A          327 MKN  329 (388)
T ss_dssp             TTT
T ss_pred             ccC
Confidence            863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=4.3e-12  Score=77.97  Aligned_cols=130  Identities=16%  Similarity=0.137  Sum_probs=94.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC-----CCEeEEEEeeCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS-----SGIKHVQFFKNN   75 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~   75 (134)
                      +|.++|..+++.+..+........ ++++++++..++...++.|.++|..+.+.. ..+....     .....+++ . +
T Consensus        65 ~v~viD~~t~~~~~~i~~~~~p~~-i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~-~~i~~g~~~~~~~~p~~i~~-~-~  140 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRITGFTSPRY-IHFLSDEKAYVTQIWDYRIFIINPKTYEIT-GYIECPDMDMESGSTEQMVQ-Y-G  140 (328)
T ss_dssp             EEEEEETTTCCEEEEEECCSSEEE-EEEEETTEEEEEEBSCSEEEEEETTTTEEE-EEEECTTCCTTTCBCCCEEE-E-T
T ss_pred             EEEEEECcccEEEEEcCCCCCCcE-EEEeCCCeEEEEECCCCeEEEEECCCCeEE-EEEEcCCccccCCCcceEEE-E-C
Confidence            378999999999998875555555 999888854444447899999999875432 2222211     14567777 3 4


Q ss_pred             CEEEEee--CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec-C----------CeEEEEeCCC
Q psy6446          76 TRLISCA--EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-G----------SCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~----------~~i~i~d~~t  134 (134)
                      ..++.+.  .++.|.++|..+++....+........+.++|+|++++++. +          +.|.++|.++
T Consensus       141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             TEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence            4554444  48899999999999888888777778999999999777653 3          6899999763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=2.4e-12  Score=80.26  Aligned_cols=127  Identities=9%  Similarity=0.075  Sum_probs=86.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCC------CeEEEEECCCCCCCCeEEeCC--CCCEeEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSND------KNIRIYDLNKPDAEPTVYRGH--SSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~--~~~v~~~~~~   72 (134)
                      |++||+.+++......+...+.. +.|+| +++.|+..+.+      ..|.+|++..+..  ..+..+  ...+..+.|+
T Consensus       170 l~~~d~~~g~~~~~~~~~~~~~~-~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          170 LIKVDIETGELEVIHQDTAWLGH-PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV--RKIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             EEEEETTTCCEEEEEEESSCEEE-EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC--EESSCCCTTEEEEEEEEC
T ss_pred             EEEEECCCCcEEeeccCCccccc-ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce--eEeeccCCCccccceEEC
Confidence            67899988887666555544444 99999 78877665443      3688888865432  222222  2357889999


Q ss_pred             eCCCEEEEeeCC-----CcEEEEecCCCceeEEEecCCCCeEEEEcc-CCcEEEEe-----------------cCCeEEE
Q psy6446          73 KNNTRLISCAED-----KTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITVT-----------------HGSCVTF  129 (134)
Q Consensus        73 ~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-----------------~~~~i~i  129 (134)
                      |+++.|+..+.+     +.|.+||+.+++......... .. +.|+| +|++++.+                 .+..|++
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            999988766543     349999998887654433332 23 89999 99987753                 2378999


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      ||+.
T Consensus       325 ~d~~  328 (396)
T 3c5m_A          325 LNTK  328 (396)
T ss_dssp             EETT
T ss_pred             Eecc
Confidence            9975

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.47  E-value=2.5e-11  Score=74.34  Aligned_cols=131  Identities=11%  Similarity=0.025  Sum_probs=89.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC----CeEEEEECCCCCCCCeEEe--CCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND----KNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~   75 (134)
                      |.+||..+++...........+.+++++|+++++++...+    +.|.+||..+.... ..+.  .+...+..+.++|++
T Consensus        68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEEECTTS
T ss_pred             EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCcccceEECCCC
Confidence            6788888777655443333344559999999888877666    68999998765422 1222  234568999999999


Q ss_pred             CEEEEeeC------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          76 TRLISCAE------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +.+++...      .+.|..+|..+++..........+..++|+|+++.+..+  .++.|.+||++
T Consensus       147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            87776553      345667776555544333333457889999999866543  46899999873

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=1.8e-11  Score=73.61  Aligned_cols=127  Identities=12%  Similarity=0.084  Sum_probs=96.1

Q ss_pred             eeEeecCCCceeeEEeeCC-CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPH-IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~   79 (134)
                      |.+||.++|+.+.++..+. .....+.+.|+|+.+++  .++.|..||. +++.. ..+... ...+..+.+.++++.++
T Consensus        17 v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~-W~~~~~~~~~~~~~~~~~dG~~lv   92 (276)
T 3no2_A           17 IAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL-WNIAAPAGCEMQTARILPDGNALV   92 (276)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE-EEEECCTTCEEEEEEECTTSCEEE
T ss_pred             EEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE-EEEcCCCCccccccEECCCCCEEE
Confidence            7899998999999998544 33444999999998883  4678999998 55533 344443 34688899999999999


Q ss_pred             EeeC-CCcEEEEecCCCceeEEEecC-------CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAE-DKTVRLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~-d~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +.+. ++.+..+|. +++.+..+...       .....+.+.++|.++++. .++.|..||.+
T Consensus        93 ~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           93 AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            8887 777888885 77777776532       234567788999988876 57999999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=5.7e-12  Score=84.42  Aligned_cols=131  Identities=10%  Similarity=0.017  Sum_probs=89.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCe----------------EEEEECCCCCCCC-eEEeC--
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKN----------------IRIYDLNKPDAEP-TVYRG--   61 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~----------------v~i~~~~~~~~~~-~~~~~--   61 (134)
                      +|++||+.+++.+.......... .++|+|||+.|+.++.++.                |++|++.++.... ..+..  
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            37899999998876433222233 4999999999998877655                9999998754321 22232  


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeC-----CCcEEEEecCC------Cc-eeEEEec-CCCCeEEEEccCCcEEEE-ec----
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAE-----DKTVRLWDVSA------SA-EVQKLEF-GAVPNSLEISRDGTTITV-TH----  123 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~-~~~v~~~~~~~~~~~l~~-~~----  123 (134)
                      +...+..+.|+||+++|+..+.     +..+.+||+.+      +. ....+.. ...+. ..|+|+|..++. +.    
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCC
Confidence            3455789999999999887654     56899999976      43 3444443 33333 358888877664 32    


Q ss_pred             CCeEEEEeCC
Q psy6446         124 GSCVTFLDAN  133 (134)
Q Consensus       124 ~~~i~i~d~~  133 (134)
                      .+.|.+||+.
T Consensus       310 ~~~l~~~d~~  319 (710)
T 2xdw_A          310 NYRLINIDFT  319 (710)
T ss_dssp             TCEEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            2479999875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=7.6e-12  Score=76.95  Aligned_cols=111  Identities=13%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---C--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---K--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (134)
                      |.+||+.+++... +   ..+ ..+.|+|+|+.|+..+.+   +  .|.+|++.++.. .. +..+.. +..+.|+|+++
T Consensus        45 l~~~d~~~~~~~~-l---~~~-~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-~~-l~~~~~-~~~~~wspdg~  116 (347)
T 2gop_A           45 IVIENLKNNARRF-I---ENA-TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-KK-ILEAKN-IRSLEWNEDSR  116 (347)
T ss_dssp             EEEEETTTCCEEE-E---ESC-EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-EE-EEEESE-EEEEEECTTSS
T ss_pred             EEEEeCCCCceEE-c---ccC-CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-EE-EEcCCC-ccceeECCCCC
Confidence            6788888776533 3   233 349999999999887643   3  477788876442 22 222334 89999999999


Q ss_pred             EEEEeeCC---------------------------CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe
Q psy6446          77 RLISCAED---------------------------KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        77 ~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  122 (134)
                      .|+.++.+                           ..|.+||+.+++....+... .+..+.|+|+| +++++
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEE
T ss_pred             EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEE
Confidence            98877632                           46899999888763444334 78899999999 66654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.44  E-value=1e-11  Score=76.32  Aligned_cols=130  Identities=12%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             eeEeecCCCceeeEEeeCCC----------ceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEE--eCCCCCEeE
Q psy6446           2 GTVWDAVSGEELHSFQHPHI----------VKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVY--RGHSSGIKH   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~v~~   68 (134)
                      |++|| .+++.+..+.....          ....++++|+ +..+++...++.|++|+..+++.. ..+  ..+...+..
T Consensus       168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-REIKHASFGRNVFA  245 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECCTTTTTCEEE
T ss_pred             EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-EEEeccccCCCcce
Confidence            67888 56777777652211          1344999998 777778888899999999865432 333  235567888


Q ss_pred             EEEee------CCCEEEEeeCCCcEEEEecCCCceeEEEe----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          69 VQFFK------NNTRLISCAEDKTVRLWDVSASAEVQKLE----FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        69 ~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++++|      +++..++...+..+.+||..+++.+..+.    ....+..++++|+|.++++. .++.|++|++.
T Consensus       246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            99988      33333333445689999999999888774    23457899999999666665 57899999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=9.3e-11  Score=70.84  Aligned_cols=110  Identities=13%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC---CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE---PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV   98 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   98 (134)
                      ....++|+|+++.+++.+.++.|.+|++......   ...+..+.+.+..+++.++++.+++.  ++.|.+||.. ++.+
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            3345999999998877788899999998732222   12223345567889999999876665  7889999986 7777


Q ss_pred             EEEecCCCCeEEEE-ccCCcEEEEecCCeEEEEeCCC
Q psy6446          99 QKLEFGAVPNSLEI-SRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        99 ~~~~~~~~v~~~~~-~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ..+.....+.+++| .|+++.|.++..+.+..++.++
T Consensus       250 ~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~~  286 (296)
T 3e5z_A          250 GRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETNV  286 (296)
T ss_dssp             EEEECSSCCCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred             EEEECCCCceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence            77765444899999 5888888877666777777653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=8.6e-11  Score=71.98  Aligned_cols=123  Identities=8%  Similarity=0.078  Sum_probs=87.3

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC----C
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED----K   85 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~   85 (134)
                      ++....+.........++|+++++.++++..++.|.+||..++.. ......+...+.+++++|+++.+++...+    +
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            344445543333345599999999888888899999999887542 22233566789999999999887777666    6


Q ss_pred             cEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEec-------CCeEEEEeCC
Q psy6446          86 TVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVTH-------GSCVTFLDAN  133 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-------~~~i~i~d~~  133 (134)
                      .|.+||..+++....+.   ....+..++++|+|+++++..       .+.|..+|.+
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence            89999988776543332   234678999999998877654       2567777653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=6.3e-12  Score=84.21  Aligned_cols=110  Identities=14%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             ceeeEEEccCCcEEEEecCCC-----eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc----------
Q psy6446          22 VKSSVHFATDSYRLATGSNDK-----NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKT----------   86 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------   86 (134)
                      .+..++|||||++|+.++.++     .|++||+.++........  ...+..++|+||++.|+.++.++.          
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            345599999999998765433     899999988654322222  223678999999999998877655          


Q ss_pred             ------EEEEecCCCcee--EEEec---CCCCeEEEEccCCcEEEEe-c-----CCeEEEEeCC
Q psy6446          87 ------VRLWDVSASAEV--QKLEF---GAVPNSLEISRDGTTITVT-H-----GSCVTFLDAN  133 (134)
Q Consensus        87 ------i~~~d~~~~~~~--~~~~~---~~~v~~~~~~~~~~~l~~~-~-----~~~i~i~d~~  133 (134)
                            |.+|++.+++..  .....   ...+..+.|+|||++|+.+ .     +..|++||+.
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence                  999999887633  22222   2335789999999988754 2     4689999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=1.5e-11  Score=82.23  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=77.1

Q ss_pred             ceeeEEEccCCcEEE-----EecCCCeEEEEECCCCCCC-CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc---------
Q psy6446          22 VKSSVHFATDSYRLA-----TGSNDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFKNNTRLISCAEDKT---------   86 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~-----~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------   86 (134)
                      .+..++|||||++|+     .|+.+..|++||+.++... ...+..  .....++|+||++.|+.++.+..         
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            455599999999998     4555678999999987643 111111  11268999999999998887765         


Q ss_pred             ----EEEEecCCCcee--EEEec---CCCCeEEEEccCCcEEEEe-cCC----eEEEEeC
Q psy6446          87 ----VRLWDVSASAEV--QKLEF---GAVPNSLEISRDGTTITVT-HGS----CVTFLDA  132 (134)
Q Consensus        87 ----i~~~d~~~~~~~--~~~~~---~~~v~~~~~~~~~~~l~~~-~~~----~i~i~d~  132 (134)
                          |++|++.++...  .....   ...+..+.|+|||++++.+ .++    .|+++|.
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence                999999887632  22222   2456789999999988764 333    6777664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.40  E-value=9.2e-12  Score=83.27  Aligned_cols=131  Identities=13%  Similarity=-0.007  Sum_probs=88.1

Q ss_pred             CeeEeecCCCcee-eEEeeCCCceeeEEEccCCcEEEEecCCCe-------------EEEEECCCCCCCC-eEEe--CCC
Q psy6446           1 MGTVWDAVSGEEL-HSFQHPHIVKSSVHFATDSYRLATGSNDKN-------------IRIYDLNKPDAEP-TVYR--GHS   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-------------v~i~~~~~~~~~~-~~~~--~~~   63 (134)
                      +|++||+.+++.+ .. .........++|+|||+.|+.++.|..             |++|++.++.... ..+.  .+.
T Consensus       148 ~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~  226 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP  226 (695)
T ss_dssp             EEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred             EEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence            3789999998865 21 111111134999999999999887765             9999998765321 2222  344


Q ss_pred             CCEeEEEEeeCCCEEEEeeCCC----cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec----CCeEEEEeCC
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDK----TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH----GSCVTFLDAN  133 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~d~~  133 (134)
                      ..+..+.|+|||++|+..+.++    .+.++|..+++...............+ ++|.+++.+.    ++.|.+||+.
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC
Confidence            5788999999999998777655    677777665654444444555566666 5666444443    4789999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=5.7e-11  Score=73.02  Aligned_cols=128  Identities=9%  Similarity=0.007  Sum_probs=92.7

Q ss_pred             CeeEeecCCCceeeEEeeCC------CceeeEEEccCCcEEEEec--CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPH------IVKSSVHFATDSYRLATGS--NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~   72 (134)
                      +|.+||..+++....+....      .... +++ . +..++++.  .++.|.++|..+.+.. ..+.. ......+.++
T Consensus       106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~-i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~-~~i~~-g~~p~~i~~~  180 (328)
T 3dsm_A          106 RIFIINPKTYEITGYIECPDMDMESGSTEQ-MVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVV-DELTI-GIQPTSLVMD  180 (328)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCBCCC-EEE-E-TTEEEEEECTTCCEEEEEETTTTEEE-EEEEC-SSCBCCCEEC
T ss_pred             eEEEEECCCCeEEEEEEcCCccccCCCcce-EEE-E-CCEEEEEcCCCCCEEEEEECCCCeEE-EEEEc-CCCccceEEc
Confidence            37889999999888877433      3444 666 3 44554444  4889999999886533 23332 3446788999


Q ss_pred             eCCCEEEEeeCC----------CcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          73 KNNTRLISCAED----------KTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        73 ~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      |+++.+++...+          +.|.++|..+++....+..  ...+..++++|+++.+.++.. .|.+||+.+
T Consensus       181 ~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t  253 (328)
T 3dsm_A          181 KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEA  253 (328)
T ss_dssp             TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTC
T ss_pred             CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCC
Confidence            999877776654          7899999999888777764  346899999999988877644 888998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.39  E-value=7.5e-11  Score=70.95  Aligned_cols=128  Identities=13%  Similarity=0.182  Sum_probs=97.2

Q ss_pred             eeEeecCCCceeeEEeeC-CCceeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCeEEe------CCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHP-HIVKSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPTVYR------GHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~------~~~~~v~~~~~~~   73 (134)
                      |..||. +|+.+..+... ...+..+.+.++|+.+++.+. ++.+..++. +++.. ..+.      .+......+++.+
T Consensus        58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l-~~~~~~~~~~~~~~~~~~v~~~~  134 (276)
T 3no2_A           58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVL-SKTEFETGIERPHAQFRQINKNK  134 (276)
T ss_dssp             EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEE-EEEEECCSCSSGGGSCSCCEECT
T ss_pred             EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEE-EEEeccCCCCcccccccCceECC
Confidence            678887 89999999853 334555889999999998876 777777775 33322 2222      1222445667888


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec-CCeEEEEeCC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH-GSCVTFLDAN  133 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~~  133 (134)
                      +++++++...++.|..||.. ++.+..+.....+.++...++|..++++. ++.|..+|.+
T Consensus       135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            99999999999999999987 99999888777778888999999888764 5689888875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.39  E-value=1.2e-12  Score=81.69  Aligned_cols=131  Identities=9%  Similarity=-0.030  Sum_probs=88.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeE-------------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH-------------   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~-------------   68 (134)
                      |.+||+.+++......+.......+.|+|+|+.|+.++.++.+++|++.++.. ......+......             
T Consensus        62 l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~  140 (396)
T 3c5m_A           62 YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLV  140 (396)
T ss_dssp             EEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             EEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccc
Confidence            56788887776544334433333378999999999998888999999987543 2333333332222             


Q ss_pred             ------EEEeeCCCEEEEe-----eCCCcEEEEecCCCceeEEEecCCCCeEEEEcc-CCcEEEE-ecC------CeEEE
Q psy6446          69 ------VQFFKNNTRLISC-----AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISR-DGTTITV-THG------SCVTF  129 (134)
Q Consensus        69 ------~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~~------~~i~i  129 (134)
                            ..|+|+++.++..     ..+..|.+||+.+++..........+..+.|+| ++..++. +.+      ..|.+
T Consensus       141 ~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          141 GIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             cccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence                  2456666665543     345679999999888766666677788999999 7876654 322      46888


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      ||+.
T Consensus       221 ~d~~  224 (396)
T 3c5m_A          221 VNED  224 (396)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            8864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.37  E-value=1.4e-10  Score=70.08  Aligned_cols=128  Identities=11%  Similarity=0.053  Sum_probs=86.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC----CCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH----SSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~   77 (134)
                      |..||..++  ...+........+++++++|+++++...++.|.+||..++... ......    ...+..++++|+++.
T Consensus        52 i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l  128 (296)
T 3e5z_A           52 TWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSL  128 (296)
T ss_dssp             EEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCE
T ss_pred             EEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCE
Confidence            678888766  5556544455556999999998888777789999998765422 111111    134678999999998


Q ss_pred             EEE----ee-------------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          78 LIS----CA-------------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        78 l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++    +.             ..+.|..++.. ++.............++|+|+++.+++. .++.|.+||+.
T Consensus       129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            886    32             13456666654 4443333344556899999999988554 46899999874

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=2.5e-11  Score=76.09  Aligned_cols=111  Identities=10%  Similarity=0.063  Sum_probs=83.2

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      .|++||+.+........ +... +..+.+.+.  .++++..||.+.+||+.++...  .   +...|++++|+|+|  ++
T Consensus       107 ~l~v~dv~sl~~~~~~~~~~~~-v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--~---~~~~Vs~v~WSpkG--~~  176 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSFEKP-VFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--Q---LAQNVTSFDVTNSQ--LA  176 (388)
T ss_dssp             EEEEEESSSTTCEEEEEECSSC-EEEEEECSS--EEEEEETTSEEEEEETTTCCEE--E---EEESEEEEEECSSE--EE
T ss_pred             cEEEEEchhhhccCccceeecc-eeeEEecCC--CEEEEECCCCEEEEEccCCccc--c---ccCCceEEEEcCCc--eE
Confidence            37899998766555554 3444 444666543  3888899999999999875432  1   44689999999999  67


Q ss_pred             EeeCCCcEEEEecCCCce--eEEEe----------cCCCCeEEEEccCCcEEEE
Q psy6446          80 SCAEDKTVRLWDVSASAE--VQKLE----------FGAVPNSLEISRDGTTITV  121 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~l~~  121 (134)
                      .+..||.+++|+......  ...+.          +...|.++.|.+++.++++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            899999999998877765  55562          3566899999999988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=2e-10  Score=71.89  Aligned_cols=126  Identities=14%  Similarity=-0.002  Sum_probs=87.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeC------CCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRG------HSS   64 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~------~~~   64 (134)
                      +|.++|..+++.+..+...... . +.++||++.++++.          .++.|.++|..+.+.......+      +..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~-i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-N-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-C-eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            4689999999998888744444 5 99999999999886          3678999999875433221111      012


Q ss_pred             CEeEEEEeeCCCEEEEeeC--CCcEEEEecCCCceeEE-EecCCCCeEEEEccCCc--EEEEecCCeEEEEeC
Q psy6446          65 GIKHVQFFKNNTRLISCAE--DKTVRLWDVSASAEVQK-LEFGAVPNSLEISRDGT--TITVTHGSCVTFLDA  132 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~~~~~~~i~i~d~  132 (134)
                      ....+.++||+++|+.+..  ++.|.++| .+++.... +.....   +.+.|++.  ++..+.||.+.++|.
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC
Confidence            3568999999999998764  47899999 99988877 654332   44455553  333346677777664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=8.1e-11  Score=73.64  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=78.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeCC------CCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRGH------SSG   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~------~~~   65 (134)
                      |.+.|..+++.+..+...... . +.++|+|+.+++++          .++.|.+||..+.+.......+.      ...
T Consensus        61 V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~  138 (386)
T 3sjl_D           61 QFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  138 (386)
T ss_dssp             EEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCC
Confidence            679999999999999844444 5 99999999998875          35789999998865433222221      124


Q ss_pred             EeEEEEeeCCCEEEEeeC--CCcEEEEecCCCceeEEEecCC
Q psy6446          66 IKHVQFFKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFGA  105 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~  105 (134)
                      ...+.++||+++++.+..  ++.|.++|+.+++.+..+....
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence            678999999999887764  6889999999999998886543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.29  E-value=3e-10  Score=74.57  Aligned_cols=104  Identities=14%  Similarity=0.171  Sum_probs=82.8

Q ss_pred             ccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC--CCceeEEEecCCC
Q psy6446          29 ATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS--ASAEVQKLEFGAV  106 (134)
Q Consensus        29 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~  106 (134)
                      ++.+..+++...++.|.++|..+++.. ..+. ....+..+.|+||++++++++.++.|.+||+.  +++.+..+.....
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~-~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIK-TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEE-EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEE-EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence            344556677778899999999886543 3333 33457799999999999999999999999995  7888888877777


Q ss_pred             CeEEEEc----cCCcEEEEe--cCCeEEEEeCCC
Q psy6446         107 PNSLEIS----RDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus       107 v~~~~~~----~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      ...++|+    |+|++++++  .++.|.++|..+
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            8899999    699988765  469999999754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.27  E-value=2.5e-10  Score=70.18  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=77.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---------------------------CeEEEEECCCCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---------------------------KNIRIYDLNKPDA   54 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~v~i~~~~~~~~   54 (134)
                      |.+||+.+++.........  +..+.|+|+|+.|+.++.+                           ..+++|++.++..
T Consensus        87 l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           87 IWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            6788888887766665554  5559999999998887632                           5788999987543


Q ss_pred             CCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC-------cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cC--
Q psy6446          55 EPTVYRGHSSGIKHVQFFKNNTRLISCAEDK-------TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG--  124 (134)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--  124 (134)
                      . ..+.. . .+..+.|+|++ .++++..+.       ...+|.+.+++....... ..+.  .++|+|+.++.. .+  
T Consensus       165 ~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          165 I-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFY--AVDSDGERILLYGKPEK  237 (347)
T ss_dssp             E-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEE--EEEECSSCEEEEECCSS
T ss_pred             E-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-ccee--eECCCCCEEEEEEcccc
Confidence            1 22333 3 78899999999 777665542       334444444444333333 3333  349999877653 22  


Q ss_pred             ------CeEEEEe
Q psy6446         125 ------SCVTFLD  131 (134)
Q Consensus       125 ------~~i~i~d  131 (134)
                            ..|.+||
T Consensus       238 ~~~~~~~~l~~~d  250 (347)
T 2gop_A          238 KYMSEHNKLYIYD  250 (347)
T ss_dssp             SCCCSSCEEEEEC
T ss_pred             CCccccceEEEEC
Confidence                  4687776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.27  E-value=1.2e-09  Score=66.21  Aligned_cols=129  Identities=14%  Similarity=0.206  Sum_probs=86.3

Q ss_pred             eEeecCCCceeeEEeeCCCceeeEEEc----cCCcEEEEe-cCCCeEEEEECC-CCCC----CCeEEeCCC-CCEeEEEE
Q psy6446           3 TVWDAVSGEELHSFQHPHIVKSSVHFA----TDSYRLATG-SNDKNIRIYDLN-KPDA----EPTVYRGHS-SGIKHVQF   71 (134)
Q Consensus         3 ~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-~~d~~v~i~~~~-~~~~----~~~~~~~~~-~~v~~~~~   71 (134)
                      ..+|.. ++......+.... ..++++    |+++.++.+ ..++.|.+|++. .+..    ....+..+. ..+..+++
T Consensus       156 ~~~~~~-g~~~~~~~~~~~~-~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          156 YCFTTD-GQMIQVDTAFQFP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             EEECTT-SCEEEEEEEESSE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             EEECCC-CCEEEeccCCCCc-ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            344443 4443333333333 348899    998765544 567899999976 2211    111122232 55788999


Q ss_pred             eeCCCEEEEeeCCCcEEEEecCCCceeEEEecC-CCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          72 FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        72 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      .++++.+++...++.|.+||..+++....+... ..+.+++++|+++.|.++  .++.|..|++.
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            999988888778889999998877766666543 678899999999855544  35799999875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.27  E-value=8.6e-10  Score=74.40  Aligned_cols=130  Identities=11%  Similarity=0.053  Sum_probs=84.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--------------eEEEEECCCCCCCC-eEEeC--CC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--------------NIRIYDLNKPDAEP-TVYRG--HS   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~v~i~~~~~~~~~~-~~~~~--~~   63 (134)
                      +|++||+.+++.+........ ...++|+|| +.|+.++.++              .|++|++.++.... ..+..  +.
T Consensus       190 ~i~v~dl~tg~~~~~~~~~~~-~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          190 TVKFVGVADGKPLADELKWVK-FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             EEEEEETTTCCEEEEEEEEEE-SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEEECCCCCCCCccCCCce-eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            378999999987654222211 234899999 8888877654              38899987754221 22322  22


Q ss_pred             CCEeEEEEeeCCCEEEEeeCC-----CcEEEEecCCC--ceeEEEe-cCCCCeEEEEccCCcEEEE-ec----CCeEEEE
Q psy6446          64 SGIKHVQFFKNNTRLISCAED-----KTVRLWDVSAS--AEVQKLE-FGAVPNSLEISRDGTTITV-TH----GSCVTFL  130 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~----~~~i~i~  130 (134)
                      ..+..+.|+|||++|+..+.+     ..|.+||+.++  +....+. ........ ++|+|..++. +.    ++.|.+|
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            358899999999998876654     37999999876  4133343 33344444 3488877665 32    3579999


Q ss_pred             eCC
Q psy6446         131 DAN  133 (134)
Q Consensus       131 d~~  133 (134)
                      |+.
T Consensus       347 d~~  349 (741)
T 1yr2_A          347 DLS  349 (741)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=5e-10  Score=71.08  Aligned_cols=102  Identities=14%  Similarity=0.022  Sum_probs=79.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeC------CCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRG------HSS   64 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~------~~~   64 (134)
                      +|.++|..+++.+..+.-.... . +.++|+++.++++.          .++.|.++|..+.+.......+      ...
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P-g-ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP-H-PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             eEEEEECCCCEEEEEEECCCCC-c-eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            3789999999999999854455 6 99999999998876          3678999999886543322222      123


Q ss_pred             CEeEEEEeeCCCEEEEeeC--CCcEEEEecCCCceeEEEecC
Q psy6446          65 GIKHVQFFKNNTRLISCAE--DKTVRLWDVSASAEVQKLEFG  104 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~  104 (134)
                      ....+.++||+++++.+..  ++.|.+.|+.+++.+..+...
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~  219 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP  219 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence            4568999999999998764  578999999999988888753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.25  E-value=6.8e-10  Score=66.02  Aligned_cols=109  Identities=8%  Similarity=0.002  Sum_probs=78.5

Q ss_pred             eeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec
Q psy6446          24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      ..++++++++.+++...++.|.+|+....... .....+...+..+++.+++..+++...++.|.+||............
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~  231 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT  231 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC
Confidence            34999999987777777889999998764321 11122336688999999997777777788999999865443321111


Q ss_pred             -CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         104 -GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       104 -~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                       ...+.+++++++|+++++. .++.|.++++.
T Consensus       232 ~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          232 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             SCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence             2457899999999876665 57999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=1.5e-09  Score=64.56  Aligned_cols=130  Identities=9%  Similarity=0.013  Sum_probs=86.5

Q ss_pred             eeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+||...+.. ..+. ........++++++++.+++...++.|.+|+..+.... .........+..+++.++++.+++
T Consensus        89 i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~  166 (270)
T 1rwi_B           89 VVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVT  166 (270)
T ss_dssp             EEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEE
T ss_pred             EEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEE
Confidence            56777654432 3332 22133444999999987777777889999976543221 111122346788999999987777


Q ss_pred             eeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ...++.|.+||............ ...+.+++++++|.++++. .++.|.+||..
T Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             ECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            77788999999876654332222 2567899999999777766 46899999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=1e-09  Score=68.77  Aligned_cols=106  Identities=13%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             EEEccCCcEEEEecC-----CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee----------CCCcEEEE
Q psy6446          26 VHFATDSYRLATGSN-----DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA----------EDKTVRLW   90 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~   90 (134)
                      ....|+++.+++...     ++.|.++|..+.+.......+. .+  .+.++||+++++.+.          .++.|.+|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC--cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            445689998888765     5799999998866443333333 33  499999999987765          35789999


Q ss_pred             ecCCCceeEEEecC--------CCCeEEEEccCCcEEEEe-c--CCeEEEEeCCC
Q psy6446          91 DVSASAEVQKLEFG--------AVPNSLEISRDGTTITVT-H--GSCVTFLDANS  134 (134)
Q Consensus        91 d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~-~--~~~i~i~d~~t  134 (134)
                      |..+.+....+...        .....+.++|||+++.++ .  ++.|.++|+++
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence            99999998888643        256789999999987765 2  58999999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.15  E-value=6.9e-09  Score=63.07  Aligned_cols=125  Identities=9%  Similarity=0.028  Sum_probs=81.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC------CeEEEEECCCCCCCC--eEE-eCCCCCEeEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND------KNIRIYDLNKPDAEP--TVY-RGHSSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~--~~~-~~~~~~v~~~~~~   72 (134)
                      |..+|..+++..... ..... ..++|+|+++.|+.+...      +.|..|++.... ..  ..+ ....+....+++.
T Consensus       171 v~~~d~~~g~~~~~~-~~~~p-~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d  247 (305)
T 3dr2_A          171 VYRLPPDGSPLQRMA-DLDHP-NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVD  247 (305)
T ss_dssp             EEEECSSSCCCEEEE-EESSE-EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEEC
T ss_pred             EEEEcCCCCcEEEEe-cCCCC-cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEEC
Confidence            445565555544333 22233 348999999988776554      689999987532 11  111 1123445678899


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ++++..++ ..+ .|.+|+. +++.+..+.....+..++|+|+++.|.++..+.+..+++
T Consensus       248 ~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~~  304 (305)
T 3dr2_A          248 RGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLPL  304 (305)
T ss_dssp             TTSCEEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred             CCCCEEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence            99985444 444 4999997 577777777666789999999988887776666666554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.15  E-value=6.5e-09  Score=62.10  Aligned_cols=128  Identities=11%  Similarity=0.075  Sum_probs=91.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC----CCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS----SGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~   77 (134)
                      +.++|..+.+.+.++... .... ..++++++.++++..++.+.++|..+.+.......+..    ..++.+.|. +++.
T Consensus        88 v~viD~~t~~v~~~i~~g-~~~g-~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQ-MKDG-WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEEEEEEECC-SSSC-CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcEEEEEECC-CCCe-EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            678999999999998744 1222 44667888888877788999999988654333222211    236778887 6755


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecC--------------CCCeEEEEccCCcEEEE-e-cCCeEEEEeC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTTITV-T-HGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~-~-~~~~i~i~d~  132 (134)
                      .+....++.|.+.|..+++....+...              .....++|+|+++.+++ + ..+++...++
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            555556789999999999999888742              24489999999876554 4 4588887765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=1.1e-09  Score=73.97  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             ceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc----------
Q psy6446          22 VKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKT----------   86 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------   86 (134)
                      .+..+.|+|||++|+.++.+     ..|++||+.++.....  ..+...+..++|+|| +.|+.++.++.          
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence            44559999999999876543     4699999998654221  112222357899999 98887776543          


Q ss_pred             ----EEEEecCCCcee--EEEecC---CCCeEEEEccCCcEEEEe-cC-----CeEEEEeCC
Q psy6446          87 ----VRLWDVSASAEV--QKLEFG---AVPNSLEISRDGTTITVT-HG-----SCVTFLDAN  133 (134)
Q Consensus        87 ----i~~~d~~~~~~~--~~~~~~---~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~  133 (134)
                          |.+|++.++...  ..+...   ..+..+.|+|||++++.. .+     ..|++||+.
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~  302 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT  302 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence                889998776532  222222   246789999999988754 22     489999874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=7.1e-08  Score=60.43  Aligned_cols=108  Identities=15%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             EEccCCcEEEEecCCCeEEEEECCCCCCC-CeEEeC----------CCCCEeEEEEeeCCCEEEEeeC----------CC
Q psy6446          27 HFATDSYRLATGSNDKNIRIYDLNKPDAE-PTVYRG----------HSSGIKHVQFFKNNTRLISCAE----------DK   85 (134)
Q Consensus        27 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------d~   85 (134)
                      .+.+++..++..+..+.+.+.|+...... ...+..          .......+.++|+++.++....          .+
T Consensus       219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            34454444444446678888887643211 111110          1223445788999888776543          35


Q ss_pred             cEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEEEe--cCCeEEEEeCCC
Q psy6446          86 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TITVT--HGSCVTFLDANS  134 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~--~~~~i~i~d~~t  134 (134)
                      .|.++|..+++.+..+.......++.|+|||+ .++++  .++.|.++|+++
T Consensus       299 ~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            79999999999999998887899999999998 66665  379999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.09  E-value=8.7e-08  Score=57.53  Aligned_cols=127  Identities=9%  Similarity=-0.029  Sum_probs=85.5

Q ss_pred             eeEeecCCCceeeEE-eeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSF-QHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+||. +++..... .........++++++++..++...++.+..+|. ++.............+..+++.++++.+++
T Consensus       122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  199 (299)
T 2z2n_A          122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV  199 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE
Confidence            456666 44443221 122233445999999988887777789999998 433211112233456889999999887777


Q ss_pred             eeCCCcEEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ...++.|..||. +++... +..   ...+.+++++++|.++++. .++.|..||.
T Consensus       200 ~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          200 EIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             ccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            666788999998 665432 322   2567899999999877766 5688999985

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.08  E-value=1e-09  Score=68.52  Aligned_cols=96  Identities=11%  Similarity=-0.065  Sum_probs=72.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeCC-------CC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRGH-------SS   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~-------~~   64 (134)
                      |.++|..+++.+.++.-.... . +.++|+++.++++.          .++.|.+||+.+.+... .+...       ..
T Consensus        48 vsvID~~t~~v~~~i~vG~~P-~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~-~I~v~~~~~~~~g~  124 (368)
T 1mda_H           48 NWVSCAGCGVTLGHSLGAFLS-L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC-E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE-EEEETTSCSCCBSC
T ss_pred             EEEEECCCCeEEEEEeCCCCC-c-eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE-EEECCCccccccCC
Confidence            569999999999999844444 6 99999999998886          36789999999876543 33222       13


Q ss_pred             CEeEEEEeeCCCEEEEeeC--CCcEEE--EecCCCceeEEEec
Q psy6446          65 GIKHVQFFKNNTRLISCAE--DKTVRL--WDVSASAEVQKLEF  103 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~  103 (134)
                      ....+.++||+++++.+..  +..+.+  +|..+   ...+..
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v  164 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS  164 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence            4678999999999998764  456888  99877   444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.07  E-value=3.3e-08  Score=62.63  Aligned_cols=129  Identities=12%  Similarity=-0.031  Sum_probs=85.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeEE----eCCCCCEeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTVY----RGHSSGIKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~   75 (134)
                      |++||..+++....... ..... ++|+++++.|+++..++  .|.+++....... ..+    ......+.+++++|++
T Consensus       154 I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~  230 (409)
T 3hrp_A          154 VRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETE  230 (409)
T ss_dssp             EEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTS
T ss_pred             EEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCC
Confidence            67888877766554443 22334 89999999988887765  7888887654432 222    1144667899999955


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEE---ec-C-C-CCe-EEEEccC-CcEEEEe-cCCeEEEEeCC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKL---EF-G-A-VPN-SLEISRD-GTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~---~~-~-~-~v~-~~~~~~~-~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..|+.+..++.|..||..++......   .. . . ... .++|+|+ +.++++. .++.|+.|+..
T Consensus       231 g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          231 EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence            55665777889999998876543221   11 1 1 123 9999996 4544454 46899999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.06  E-value=8.9e-08  Score=60.68  Aligned_cols=129  Identities=8%  Similarity=-0.036  Sum_probs=86.0

Q ss_pred             eeEeecCCCceeeE----EeeCCCc--eeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCC-----------
Q psy6446           2 GTVWDAVSGEELHS----FQHPHIV--KSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS-----------   63 (134)
Q Consensus         2 i~v~d~~~~~~~~~----~~~~~~~--~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-----------   63 (134)
                      |+.||..++.....    .......  .+.++|+|+ +.++++-..++.|+.|+.+..   ...+.++.           
T Consensus       242 I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~  318 (409)
T 3hrp_A          242 FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLRE  318 (409)
T ss_dssp             EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGG
T ss_pred             EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCccc
Confidence            67788776653222    1111111  214999994 666666677889999987642   22233322           


Q ss_pred             ----CCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCceeEEEec---------------CCCCeEEEEccCCcEEEEe-
Q psy6446          64 ----SGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAEVQKLEF---------------GAVPNSLEISRDGTTITVT-  122 (134)
Q Consensus        64 ----~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~-  122 (134)
                          .....++++|+++.+++-. .++.|+.|+..++........               -..+..+++++++.++++. 
T Consensus       319 ~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          319 EALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             GCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             ccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence                3478999999999777777 788999999877764433332               1346899999998777775 


Q ss_pred             cCCeEEEEeCC
Q psy6446         123 HGSCVTFLDAN  133 (134)
Q Consensus       123 ~~~~i~i~d~~  133 (134)
                      .++.|+.++++
T Consensus       399 ~n~~Ir~i~~e  409 (409)
T 3hrp_A          399 WGKAIRKYAVE  409 (409)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCCeEEEEEeC
Confidence            56899988764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.06  E-value=3.6e-08  Score=66.23  Aligned_cols=130  Identities=15%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC-------------eEEEEECCCCCCCCe-EEeC---CC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK-------------NIRIYDLNKPDAEPT-VYRG---HS   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------------~v~i~~~~~~~~~~~-~~~~---~~   63 (134)
                      +|+++|+.+++.+...-.. .....++|+ |++.|+.++.+.             .|++|++.+...... .+..   |.
T Consensus       156 ~i~v~dl~tg~~~~~~~~~-~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~  233 (693)
T 3iuj_A          156 EIHLMDVESKQPLETPLKD-VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH  233 (693)
T ss_dssp             EEEEEETTTCSEEEEEEEE-EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC
T ss_pred             EEEEEECCCCCCCccccCC-ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC
Confidence            4789999999876532111 112348999 999998887763             499999987543222 2222   33


Q ss_pred             CCEeEEEEeeCCCEEEEeeC----CCcEEEEecCCCc-eeEEEe-cCCCCeEEEEccCCcEEE-Eec----CCeEEEEeC
Q psy6446          64 SGIKHVQFFKNNTRLISCAE----DKTVRLWDVSASA-EVQKLE-FGAVPNSLEISRDGTTIT-VTH----GSCVTFLDA  132 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~-~~~----~~~i~i~d~  132 (134)
                      .....+.|+||+++|+....    .+.+.++|+.++. ....+. ........ ++++|..++ .+.    .+.|..+|+
T Consensus       234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~  312 (693)
T 3iuj_A          234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA  312 (693)
T ss_dssp             CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence            45788999999998864332    3579999987763 333443 33333343 666665544 442    268888887


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      .
T Consensus       313 ~  313 (693)
T 3iuj_A          313 A  313 (693)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=1.2e-07  Score=56.88  Aligned_cols=127  Identities=7%  Similarity=-0.070  Sum_probs=84.8

Q ss_pred             eeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |..||. +++.... +.........++++++++..++...++.+..|+. ++.........+...+..+++.++++.+++
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            556776 5554432 1222233344999999987777777889999998 443211112234467899999999987666


Q ss_pred             eeCCCcEEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ...++.|..||. +++ ...+..   ...+.++.+ +++.++++...+.+..+|.+
T Consensus       242 ~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence            667788999998 443 333332   356788999 88888777667788888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=6.2e-08  Score=58.70  Aligned_cols=126  Identities=13%  Similarity=0.081  Sum_probs=77.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC----CCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG----HSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~   77 (134)
                      |..||..+++. ..+.....+ .+++++++++++++.  ++.|.+||..++... .....    ....+..+++.|+++.
T Consensus        37 i~~~d~~~~~~-~~~~~~~~~-~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l  111 (297)
T 3g4e_A           37 VCRWDSFTKQV-QRVTMDAPV-SSVALRQSGGYVATI--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRY  111 (297)
T ss_dssp             EEEEETTTCCE-EEEECSSCE-EEEEEBTTSSEEEEE--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCE
T ss_pred             EEEEECCCCcE-EEEeCCCce-EEEEECCCCCEEEEE--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCE
Confidence            56778776654 334444444 459999999955543  567999998764421 11111    1234788999999997


Q ss_pred             EEEeeCC---------CcEEEEecCC-CceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          78 LISCAED---------KTVRLWDVSA-SAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        78 l~~~~~d---------~~i~~~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      +++....         ..-.+|.+.. ++.............++|+|+++.+..+  .++.|.+||+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          112 FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             EEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            7654221         2234554432 3333333334456899999999876543  4689999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=1.3e-11  Score=77.10  Aligned_cols=126  Identities=10%  Similarity=0.012  Sum_probs=62.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCC-CEe-EEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS-GIK-HVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~   79 (134)
                      |+.||..+|+.+..++. ..+.. ..+..++..+++++.|+.++.||..+++... ....+.. .+. ...+. ++..++
T Consensus        21 v~a~d~~tG~~~W~~~~-~~~~s-~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~~sp~~~-~~~~v~   96 (369)
T 2hz6_A           21 LHAVSKRTGSIKWTLKE-DPVLQ-VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQASPCRS-SDGILY   96 (369)
T ss_dssp             EEEEETTTCCEEEEEEC-CCSCC-CC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHHHHTTCSCC------CC
T ss_pred             EEEEECCCCCEEEEecC-CCcee-cceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCccccccCceEe-cCCEEE
Confidence            68899999999998887 44444 4455677788888899999999998766432 2221111 010 00111 345677


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.++.+..||..+|+....+.....   ..++|++..++++ .++.|+.||.++
T Consensus        97 ~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           97 MGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSS
T ss_pred             EEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCC
Confidence            788899999999999998877654332   3445666666654 678999999764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=5.3e-08  Score=65.38  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=92.1

Q ss_pred             eeEeecCCCceeeEEee--C--------CCceeeEEEccCC---cEEEEecCCCeEEEEECCCCCCCCeEEeCC------
Q psy6446           2 GTVWDAVSGEELHSFQH--P--------HIVKSSVHFATDS---YRLATGSNDKNIRIYDLNKPDAEPTVYRGH------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~--~--------~~~~~~~~~~~~~---~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------   62 (134)
                      |..+|..+|+.+..++.  +        ...+. .....+|   ..++.++.+|.++++|..+++.+.......      
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l-~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL-ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE-EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEE-EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            67889999999998872  1        11222 3333467   678999999999999999876432211110      


Q ss_pred             ----CCCE------------------------eEEEEeeCCCEEEEeeC-------------------------------
Q psy6446          63 ----SSGI------------------------KHVQFFKNNTRLISCAE-------------------------------   83 (134)
Q Consensus        63 ----~~~v------------------------~~~~~~~~~~~l~~~~~-------------------------------   83 (134)
                          ...+                        ..++++|+...++....                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                0001                        25688888877766432                               


Q ss_pred             ------------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          84 ------------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        84 ------------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                                  .+.|..||+.+++.+.......++....+...+..++.+ .+|.+++||.+|
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                        267999999999999988877766666677777666655 689999999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=9.8e-08  Score=58.62  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-----CCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-----SSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~   76 (134)
                      |..||..+++. ..+..... +.++.++++++++++. . ..+.+||..++..  ..+...     ...+..+.++|+++
T Consensus        73 i~~~d~~~~~~-~~~~~~~~-v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~~G~  146 (326)
T 2ghs_A           73 LHELHLASGRK-TVHALPFM-GSALAKISDSKQLIAS-D-DGLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGA  146 (326)
T ss_dssp             EEEEETTTTEE-EEEECSSC-EEEEEEEETTEEEEEE-T-TEEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSC
T ss_pred             EEEEECCCCcE-EEEECCCc-ceEEEEeCCCeEEEEE-C-CCEEEEECCCCcE--EEEeeCCCCCCCCCCCCEEECCCCC
Confidence            56788776654 33444433 4459999999877765 3 3589999876542  122211     23578999999998


Q ss_pred             EEEEeeC------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          77 RLISCAE------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      .+++...      .+.|..++  +++.............++|+|+++.+..+  .++.|.+||+.
T Consensus       147 l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          147 LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            7765432      24455555  44433322333456789999999876544  35899999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.02  E-value=5.3e-08  Score=62.05  Aligned_cols=130  Identities=12%  Similarity=0.040  Sum_probs=88.3

Q ss_pred             eeEeecCCCceeeEEe-eCCC---ceeeEEEccCCcEEEEec-------------------CCCeEEEEECCCCCCCCeE
Q psy6446           2 GTVWDAVSGEELHSFQ-HPHI---VKSSVHFATDSYRLATGS-------------------NDKNIRIYDLNKPDAEPTV   58 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~~-------------------~d~~v~i~~~~~~~~~~~~   58 (134)
                      |.++|..+.+.+.+++ ....   ... +.|+|+++.+++..                   ....|.+||+.+.+. ...
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd-~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYD-FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHS  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCC-EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccce-EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeE
Confidence            6789999999998887 2222   233 78899999888874                   368999999987532 233


Q ss_pred             EeC--CCCCEeEEEE--eeCCCEEEEeeC------CCcEEEEecCCCcee--EEE--ec-----------------CCCC
Q psy6446          59 YRG--HSSGIKHVQF--FKNNTRLISCAE------DKTVRLWDVSASAEV--QKL--EF-----------------GAVP  107 (134)
Q Consensus        59 ~~~--~~~~v~~~~~--~~~~~~l~~~~~------d~~i~~~d~~~~~~~--~~~--~~-----------------~~~v  107 (134)
                      +..  .......+.|  +|++++++.+.+      +++|.+|....++..  ..+  ..                 ....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            332  1134556666  899998876664      567877665543311  111  00                 2346


Q ss_pred             eEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         108 NSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       108 ~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ..+.+++||++|.++  ..+.|.+||+.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            789999999999876  35899999973

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.00  E-value=6.4e-08  Score=58.82  Aligned_cols=126  Identities=12%  Similarity=0.090  Sum_probs=81.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-----CCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-----SSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~   76 (134)
                      |..|+. +++ ...+.........+.++++|+++++...++.|..|+.. +. . ..+..+     ...+..+.+.|+++
T Consensus        69 i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~-~~~~~~~~~~~~~~~~~i~~d~dG~  143 (305)
T 3dr2_A           69 VLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-A-HLLVGRYAGKRLNSPNDLIVARDGA  143 (305)
T ss_dssp             EEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEEECEETTEECSCCCCEEECTTSC
T ss_pred             EEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-E-EEEEeccCCCccCCCCCEEECCCCC
Confidence            456765 444 33444344445559999999977776667889999875 33 2 222111     13467899999999


Q ss_pred             EEEE----eeC-------------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cC------CeEEEEeC
Q psy6446          77 RLIS----CAE-------------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HG------SCVTFLDA  132 (134)
Q Consensus        77 ~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~------~~i~i~d~  132 (134)
                      .+++    +..             .+.|..+|..+++..... .......++|+|+++.+..+ ..      +.|.+||+
T Consensus       144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            8886    332             245777887666654433 33456789999999876654 33      68999886


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      .
T Consensus       223 ~  223 (305)
T 3dr2_A          223 R  223 (305)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.00  E-value=8.4e-08  Score=64.53  Aligned_cols=132  Identities=11%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             eeEeecCCCceeeEEeeC-C---------CceeeEEEccCCc---EEEEecCCCeEEEEECCCCCCCCeEEeCC------
Q psy6446           2 GTVWDAVSGEELHSFQHP-H---------IVKSSVHFATDSY---RLATGSNDKNIRIYDLNKPDAEPTVYRGH------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~---~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------   62 (134)
                      |..+|..+|+.+..++.. .         ..+. .....+|+   .++.++.+|.++++|..+++.+.......      
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l-~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL-AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE-EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEE-EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            678999999999988731 1         1111 22223565   78899999999999998876431110000      


Q ss_pred             ---------------------C-----------CCEeEEEEeeCCCEEEEeeC---------------------------
Q psy6446          63 ---------------------S-----------SGIKHVQFFKNNTRLISCAE---------------------------   83 (134)
Q Consensus        63 ---------------------~-----------~~v~~~~~~~~~~~l~~~~~---------------------------   83 (134)
                                           .           ..-..++++|+...++....                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                                 0           00123678887777665421                           


Q ss_pred             ------------------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          84 ------------------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        84 ------------------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                                        ++.+..||+.+++.+.......+.....+...+.+++.+ .|+.|+.||.+|
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC
Confidence                              367999999999999988877666555666666666665 689999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.99  E-value=1.2e-07  Score=56.68  Aligned_cols=122  Identities=13%  Similarity=0.144  Sum_probs=78.9

Q ss_pred             CceeeEEeeCCCc-eeeEEEccCCcEEEEecC--CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe-eCCC
Q psy6446          10 GEELHSFQHPHIV-KSSVHFATDSYRLATGSN--DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC-AEDK   85 (134)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~   85 (134)
                      .+.+.++.+.... ..-+.|++++.+..+.+.  ++.|+++|+.+++.......+.......+++  +++.++.. -.++
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCS
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCC
Confidence            4567777766543 344999998755444443  5799999999876443222222222233444  45566544 4578


Q ss_pred             cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          86 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+.++|..+.+.+..+... ......+++||..++.+ .++.|.++|.++
T Consensus        87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t  135 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHT  135 (266)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred             EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence            9999999999999988765 22334456677655554 568999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=1.1e-07  Score=56.59  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|+++|+.+++.+..+.-....+. ....++++.|... -.++.+.++|..+.+... .+... .  ....+.++++.|+
T Consensus        66 ~v~~vD~~Tgkv~~~~~l~~~~Fg-eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~-ti~~~-~--eG~glt~dg~~L~  140 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIELGKRYFG-EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR-SFNYD-G--EGWGLTHNDQYLI  140 (262)
T ss_dssp             EEEEECTTTCCEEEEEECCTTCCE-EEEEEETTEEEEEESSSSEEEEEETTTCCEEE-EEECS-S--CCCCEEECSSCEE
T ss_pred             eEEEEECCCCcEEEEEecCCccce-eEEEEeCCEEEEEEeeCCEEEEEECccCcEEE-EEECC-C--CceEEecCCCEEE
Confidence            378999999999998885555443 4444455565554 457899999998866443 33322 1  3344556888888


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecC---CC---CeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFG---AV---PNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~---~~---v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+..++.|.++|..+.+....+...   .+   ++.+.|. +|+..+.. .++.|.+.|.+|
T Consensus       141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred             EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence            7777888999999999988887642   22   3457776 67655555 468888888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.97  E-value=3.3e-08  Score=59.90  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             eeEEEccCCcEEE-EecCCCeEEEEECC--CCCCC-CeEE---eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          24 SSVHFATDSYRLA-TGSNDKNIRIYDLN--KPDAE-PTVY---RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        24 ~~~~~~~~~~~l~-~~~~d~~v~i~~~~--~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      ..++|+|+++.++ +.+.++.|..|+++  ++... ...+   ..+.+.+..+++.++++..++....+.|..||..+++
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            3499999998764 45667899999874  32211 0111   2233567899999999888887778889999998899


Q ss_pred             eeEEEecC-CCCeEEEEc-cCCcEEEE
Q psy6446          97 EVQKLEFG-AVPNSLEIS-RDGTTITV  121 (134)
Q Consensus        97 ~~~~~~~~-~~v~~~~~~-~~~~~l~~  121 (134)
                      ....+... ..+.+++|. |+++.|.+
T Consensus       232 ~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          232 RLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             EEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             EEEEEECCCCCceEEEEeCCCCCEEEE
Confidence            88888765 578999998 88776554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.97  E-value=1.2e-07  Score=57.45  Aligned_cols=127  Identities=10%  Similarity=0.074  Sum_probs=80.2

Q ss_pred             eeEeecCCCceeeEEe-----eCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeE-Ee---C-CCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQ-----HPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTV-YR---G-HSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~---~-~~~~v~~~~   70 (134)
                      |.+||..+++......     +...+. .+.++++ ++++++.. .+.|.+||.. +.. ... ..   . ....+..++
T Consensus        48 i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~  123 (314)
T 1pjx_A           48 ILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFVADM-RLGLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             EEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEEEET-TTEEEEEETT-SCE-EECCSBCTTSCBCBCCCEEE
T ss_pred             EEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEEEEC-CCCEEEEeCC-CCE-EEEEeccCCCccccCCcCEE
Confidence            6778877777543222     223334 4999998 76555554 4478889987 432 111 11   1 123578999


Q ss_pred             EeeCCCEEEEeeCC---------------CcEEEEecCCCceeEEEecCCCCeEEEEc----cCCcEEEEe--cCCeEEE
Q psy6446          71 FFKNNTRLISCAED---------------KTVRLWDVSASAEVQKLEFGAVPNSLEIS----RDGTTITVT--HGSCVTF  129 (134)
Q Consensus        71 ~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~--~~~~i~i  129 (134)
                      +.++++.+++...+               +.|..+|.. ++.............++++    |+++.+..+  .++.|.+
T Consensus       124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~  202 (314)
T 1pjx_A          124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence            99999887776554               567777765 5544333334456889999    999755443  4689999


Q ss_pred             EeCC
Q psy6446         130 LDAN  133 (134)
Q Consensus       130 ~d~~  133 (134)
                      ||++
T Consensus       203 ~~~~  206 (314)
T 1pjx_A          203 YDIK  206 (314)
T ss_dssp             EEEE
T ss_pred             EECC
Confidence            9853

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.95  E-value=1.7e-08  Score=67.74  Aligned_cols=109  Identities=16%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             ceeeEEEccCCcEEEE-----ecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC-----------
Q psy6446          22 VKSSVHFATDSYRLAT-----GSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK-----------   85 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~-----~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------   85 (134)
                      .+..+.|||||++|+.     |+.+..|+++|+.+++.....+..  .....++|+ |++.|+.+..+.           
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence            3455899999999884     333457999999987633221211  113578899 999998877663           


Q ss_pred             --cEEEEecCCCce--eEEEecC----CCCeEEEEccCCcEEEEe--c---CCeEEEEeCC
Q psy6446          86 --TVRLWDVSASAE--VQKLEFG----AVPNSLEISRDGTTITVT--H---GSCVTFLDAN  133 (134)
Q Consensus        86 --~i~~~d~~~~~~--~~~~~~~----~~v~~~~~~~~~~~l~~~--~---~~~i~i~d~~  133 (134)
                        .|.+|++.++..  ...+...    .....+.|+|||++++..  .   .+.|+++|+.
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  267 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS  267 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence              399999887653  2222222    235788999999988653  2   2589999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.95  E-value=1.4e-07  Score=62.00  Aligned_cols=129  Identities=12%  Similarity=0.036  Sum_probs=93.3

Q ss_pred             eeEeecCCCceeeEEee--CCCceeeEEE-c-cCCcEEEEec------------------CCCeEEEEECCCCCCCCeEE
Q psy6446           2 GTVWDAVSGEELHSFQH--PHIVKSSVHF-A-TDSYRLATGS------------------NDKNIRIYDLNKPDAEPTVY   59 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~l~~~~------------------~d~~v~i~~~~~~~~~~~~~   59 (134)
                      |.+.|+.+.++.+.++-  ...... +++ + |+++++++++                  .++.+.+.|..+.+...+..
T Consensus       114 VavIdl~t~~~~~ii~ip~g~~phg-~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~  192 (595)
T 1fwx_A          114 VARVRCDVMKCDAILEIPNAKGIHG-LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  192 (595)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEE-EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCceEeeEEeCCCCCCCcc-eeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence            67889999998886652  233334 776 5 8999998884                  24578899988754333322


Q ss_pred             eCCCCCEeEEEEeeCCCEEEEeeCCC--------------------------------------cEEEEecCC--Cce-e
Q psy6446          60 RGHSSGIKHVQFFKNNTRLISCAEDK--------------------------------------TVRLWDVSA--SAE-V   98 (134)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~~~d~~~--~~~-~   98 (134)
                      .+  +....++++|+++++++.+.+.                                      .+.+.|..+  ++. .
T Consensus       193 Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~  270 (595)
T 1fwx_A          193 VS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT  270 (595)
T ss_dssp             ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE
T ss_pred             eC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE
Confidence            22  2457788999999988777543                                      477778877  445 5


Q ss_pred             EEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          99 QKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        99 ~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ..++......++.++|||++++++  .+.+|.++|++
T Consensus       271 ~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          271 RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence            667777778899999999998876  46899999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=1.8e-08  Score=64.09  Aligned_cols=102  Identities=11%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             cCCcEEEEecCC-----CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee----------CCCcEEEEecCC
Q psy6446          30 TDSYRLATGSND-----KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA----------EDKTVRLWDVSA   94 (134)
Q Consensus        30 ~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~   94 (134)
                      ++++.+++....     +.|.++|..+.+.......+. .+  .+.++||+++++.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            466766665442     699999999866543333333 33  899999999888765          367899999999


Q ss_pred             CceeEEEecC--------CCCeEEEEccCCcEEEEe-c--CCeEEEEeCCC
Q psy6446          95 SAEVQKLEFG--------AVPNSLEISRDGTTITVT-H--GSCVTFLDANS  134 (134)
Q Consensus        95 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~-~--~~~i~i~d~~t  134 (134)
                      ++....+...        .....+.++|||++++++ .  ++.|.+.|+.+
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence            9998888653        346789999999988875 2  57899999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=8.5e-08  Score=62.99  Aligned_cols=129  Identities=15%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--------------------------------------e
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--------------------------------------N   43 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------------------------------~   43 (134)
                      +.+.|..+.+.+.++.-....-. ++++|+|+++++.+.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~-~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDN-CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCC-EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCCCccc-eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            67889999999999884335555 88999999998887543                                      3


Q ss_pred             EEEEECCC--CCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCc------------eeEEEecCCCCe
Q psy6446          44 IRIYDLNK--PDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASA------------EVQKLEFGAVPN  108 (134)
Q Consensus        44 v~i~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~------------~~~~~~~~~~v~  108 (134)
                      |.+.|..+  +........ -.....++.++|||++++..+ .+..+.++|+.+.+            ............
T Consensus       256 V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             EEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            66777766  322112222 224567899999999887655 57889999998653            334444566789


Q ss_pred             EEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         109 SLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       109 ~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      .++|+|+| .+.++  -+++|.+||+.
T Consensus       335 h~aF~~dG-~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          335 HTAFDGRG-NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             eEEECCCC-eEEEEEecCCcEEEEEhh
Confidence            99999999 55443  58999999974

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.92  E-value=9.6e-07  Score=53.00  Aligned_cols=127  Identities=10%  Similarity=0.030  Sum_probs=85.0

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |.+||.. ++... +.  ........++++++++..++...++.|..+|.. +.............+..+++.++++.++
T Consensus        43 v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v  119 (300)
T 2qc5_A           43 ISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWF  119 (300)
T ss_dssp             EEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             EEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEE
Confidence            5567765 44432 32  122334448899999888877778889999977 3322111122346789999999998888


Q ss_pred             EeeCCCcEEEEecCCCceeEE-Ee-cCCCCeEEEEccCCcEEEEec-CCeEEEEeC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQK-LE-FGAVPNSLEISRDGTTITVTH-GSCVTFLDA  132 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~d~  132 (134)
                      +...++.|..+|.. ++.... +. ....+..++++++++++++.. ++.|..+|.
T Consensus       120 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          120 TQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence            77778889999987 544322 11 235678999999998666654 678888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.90  E-value=8.8e-07  Score=53.16  Aligned_cols=128  Identities=6%  Similarity=-0.048  Sum_probs=82.9

Q ss_pred             eeEeecCCCceeeE-EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHS-FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |..+|.. ++.... +.........+.+.++++..++...++.|..++. ++.............+..+.+.++++.+++
T Consensus       127 i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  204 (300)
T 2qc5_A          127 IGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV  204 (300)
T ss_dssp             EEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             EEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence            4556655 444321 1222333445899999987777666788999988 333221111233456889999998887776


Q ss_pred             eeCCCcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ....+.|..+|. +++......  ....+.+++++++|.+.++. .++.|..||.
T Consensus       205 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          205 EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            666778999998 444333211  23457899999999877766 4588988875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=3.4e-07  Score=54.44  Aligned_cols=117  Identities=13%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC-CC---CCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-HS---SGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~   77 (134)
                      +.+||..+.+.+.++......   ..+.++++.|+.+..++.+.++|..+.+........ ..   ..++.+.|. +++.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            679999999999999854433   233357788887777788999998876543322211 11   334567776 6766


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecC-------------CCCeEEEEccCCcEEEEe
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFG-------------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~  122 (134)
                      .+..-.++.|.+.|..+++....+...             .-.+.++++|+++.+.++
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence            666667889999999999999888742             234889999988666554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.87  E-value=3.9e-07  Score=54.29  Aligned_cols=117  Identities=9%  Similarity=0.003  Sum_probs=82.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCC---CCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHS---SGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~   77 (134)
                      +.+||..+.+.+.++........ ++  ++++.|+.+..++.+.++|..+.+....... .+.   ..++.+.|. +++.
T Consensus       118 v~V~D~~Tl~~~~ti~~~~eGwG-Lt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGEGWG-LC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI  193 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCC-EE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCcCcEEEEEeCCCceeE-Ee--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence            67999999999999985443333 44  5688888887789999999888654332211 121   234667776 7765


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecC--------------CCCeEEEEccCCcE-EEEe
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTT-ITVT  122 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~-l~~~  122 (134)
                      .+....++.|.+.|..+++....+...              .-.+.++++|++.. +++|
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            555556789999999999998888732              23489999998754 4455

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=1.2e-06  Score=51.63  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|+++|+.+++.+..+.-+...+. ....+.++.|. ..-.++.+.++|..+.+... .+... .  ....+.++++.|+
T Consensus        44 ~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~-ti~~~-~--~Gwglt~dg~~L~  118 (243)
T 3mbr_X           44 SVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA-RFRYP-G--EGWALTSDDSHLY  118 (243)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEESSSSEEEEEETTTTEEEE-EEECS-S--CCCEEEECSSCEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE-EEeCC-C--CceEEeeCCCEEE
Confidence            378999999999998885555443 33334445554 44567899999998865443 33322 2  2244456788887


Q ss_pred             EeeCCCcEEEEecCCCceeEEEecC------CCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEFG------AVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+..++.|.++|..+.+....+...      ..++.+.+. +|+..+.. .+..|.+.|.++
T Consensus       119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence            7777889999999999988887742      234556665 66655544 467888888764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.87  E-value=5.1e-07  Score=55.81  Aligned_cols=130  Identities=11%  Similarity=0.135  Sum_probs=83.1

Q ss_pred             eeEeecCCCceeeEEeeCC------CceeeEEEccCCcEE-EEec---CCCeEEEEECCCCCCCCeEEeCC---------
Q psy6446           2 GTVWDAVSGEELHSFQHPH------IVKSSVHFATDSYRL-ATGS---NDKNIRIYDLNKPDAEPTVYRGH---------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l-~~~~---~d~~v~i~~~~~~~~~~~~~~~~---------   62 (134)
                      |.+||+.+++.+..+..+.      .....+++++++..+ ++..   .++.|.+||+.++.. ...+.+|         
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccccc
Confidence            6789999998877776321      122448999865444 5544   578999999876431 1111111         


Q ss_pred             --------------------CCCEeEEEEeeCCCEEEEeeCCC-cEEEEecC---CCc--------eeEEEecCCCCeEE
Q psy6446          63 --------------------SSGIKHVQFFKNNTRLISCAEDK-TVRLWDVS---ASA--------EVQKLEFGAVPNSL  110 (134)
Q Consensus        63 --------------------~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~---~~~--------~~~~~~~~~~v~~~  110 (134)
                                          ...+..++++|+++.|+.+...+ .+..++..   .+.        .+...........+
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                                12368899999999888777665 45444432   110        11222233456789


Q ss_pred             EEccCCcEEEEe-cCCeEEEEeC
Q psy6446         111 EISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       111 ~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      +++++|.++++. .++.|.+||.
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEET
T ss_pred             EECCCCCEEEEccCCCeEEEEEC
Confidence            999999887776 5689999997

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.84  E-value=1.1e-06  Score=54.02  Aligned_cols=98  Identities=12%  Similarity=0.116  Sum_probs=68.2

Q ss_pred             eeeEEEccCCcEEEEe-cCCCeEEEEECC--CC-CCC-CeEE---eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          23 KSSVHFATDSYRLATG-SNDKNIRIYDLN--KP-DAE-PTVY---RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~-~~d~~v~i~~~~--~~-~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      ...++|+|+++.++.+ +.++.|.+|++.  ++ ... ...+   ......+..+.+.++++.+++...++.|..||. +
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~  259 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D  259 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-C
Confidence            3449999999876544 567899999986  43 211 1122   123455778999999987777767788999998 5


Q ss_pred             CceeEEEecC-CCCeEEEEc-cCCcEEEE
Q psy6446          95 SAEVQKLEFG-AVPNSLEIS-RDGTTITV  121 (134)
Q Consensus        95 ~~~~~~~~~~-~~v~~~~~~-~~~~~l~~  121 (134)
                      ++....+... ..+.+++|+ +++..|.+
T Consensus       260 g~~~~~i~~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          260 GNHIARYEVPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             CCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence            6666666644 458899998 88776544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.82  E-value=2.6e-10  Score=71.25  Aligned_cols=127  Identities=13%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             CeeEeecCCCceeeEEeeCC--CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPH--IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      .|+.||..+|+.+...+...  ....+..+. .+..+++++.++.++.||..+++.... +..+.    ...++|++..+
T Consensus        60 ~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~~----~~~~~p~~~~v  133 (369)
T 2hz6_A           60 SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSAF----ADSLSPSTSLL  133 (369)
T ss_dssp             CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------E
T ss_pred             EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCCC----cccccccCCEE
Confidence            36789988888876665221  111111111 345678888899999999998765432 32222    23456688889


Q ss_pred             EEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccC----CcEEEEecCCeEEEEeCCC
Q psy6446          79 ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRD----GTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++++.++.+..||..+++....+.... .....++++    +..++.+.+|.|..||.++
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            999999999999999998776654221 122223332    4555566789999998753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=3.3e-08  Score=61.80  Aligned_cols=88  Identities=5%  Similarity=-0.050  Sum_probs=68.5

Q ss_pred             eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee----------CCCcEEEEecCCCceeEEEecC--------
Q psy6446          43 NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA----------EDKTVRLWDVSASAEVQKLEFG--------  104 (134)
Q Consensus        43 ~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~--------  104 (134)
                      .+.++|..+.+.......+. .+  .+.++||+++++.+.          .++.|.++|..+++....+...        
T Consensus        47 ~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            88899998876554443444 34  799999999988775          3678999999999999998754        


Q ss_pred             CCCeEEEEccCCcEEEEe--c-CCeEEE--EeCC
Q psy6446         105 AVPNSLEISRDGTTITVT--H-GSCVTF--LDAN  133 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~--~-~~~i~i--~d~~  133 (134)
                      .....+.++|||++++++  . +..+.+  +|+.
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence            357899999999888765  2 467888  8864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.82  E-value=1.1e-06  Score=51.74  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCC---CCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHS---SGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~   77 (134)
                      +.+||..+.+.+.++........ +  .+++..|+.+..++.|.++|..+.+....... .+.   ..++.+.+. +++.
T Consensus        87 v~v~D~~tl~~~~ti~~~~~Gwg-l--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEGWA-L--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCE-E--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCcCcEEEEEeCCCCceE-E--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            67999999999999985544333 3  45677787777788999999988654322211 111   244566665 6665


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEecC--------------CCCeEEEEccCCcEEEEe
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLEFG--------------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~  122 (134)
                      .+..-.+..|.+.|..+++....+...              .-.+.++++|++..|.++
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence            656656789999999999999888732              134789999987655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.73  E-value=5.1e-06  Score=49.59  Aligned_cols=118  Identities=10%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             ceeeEEeeCCCce-eeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE-eeCCCcEE
Q psy6446          11 EELHSFQHPHIVK-SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS-CAEDKTVR   88 (134)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~   88 (134)
                      +.+.++.|....+ ..+.|+ ++.+..+.+.+|.|+.+|+.+++.....   -..........++++.|.. .-.++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence            3456666555443 447776 4666777788899999999997765443   2234444334445555544 44678999


Q ss_pred             EEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          89 LWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        89 ~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++|..+.+.+.++.....-..++  +++..|+.+ .++.|+++|.+|
T Consensus       120 V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T  164 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG  164 (268)
T ss_dssp             EEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTT
T ss_pred             EEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCC
Confidence            99999999999998765545555  557666655 578999999764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.70  E-value=7.4e-06  Score=52.48  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             eeEeecCC-----CceeeEEe--eCCCceeeEEE-----------c--cCCcEEEE-ecCCCeEEEEECCCCCCCCeEEe
Q psy6446           2 GTVWDAVS-----GEELHSFQ--HPHIVKSSVHF-----------A--TDSYRLAT-GSNDKNIRIYDLNKPDAEPTVYR   60 (134)
Q Consensus         2 i~v~d~~~-----~~~~~~~~--~~~~~~~~~~~-----------~--~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~   60 (134)
                      |.+.|+..     ++.+..+.  .......-..|           +  +++++|++ +-.++.|+++|+.+........+
T Consensus        45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k  124 (462)
T 2ece_A           45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIK  124 (462)
T ss_dssp             EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE
T ss_pred             EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeee
Confidence            44566665     66777665  21212222445           5  66777655 55678999999875432222222


Q ss_pred             CC----------CCCEeEEEEeeCCCEEEEeeCC------CcEEEEecCCCceeEEEecC----CCCeEEEEccCCcEEE
Q psy6446          61 GH----------SSGIKHVQFFKNNTRLISCAED------KTVRLWDVSASAEVQKLEFG----AVPNSLEISRDGTTIT  120 (134)
Q Consensus        61 ~~----------~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~  120 (134)
                      .-          ......+...|++ .++++..+      +.+.+.|..+.+.+..+...    ..-..+-|+|+++.++
T Consensus       125 ~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv  203 (462)
T 2ece_A          125 VIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLV  203 (462)
T ss_dssp             EECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEE
T ss_pred             eechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEE
Confidence            11          1234567788999 66655444      68999999999998888643    1234578899999888


Q ss_pred             Eec--------------------CCeEEEEeCCC
Q psy6446         121 VTH--------------------GSCVTFLDANS  134 (134)
Q Consensus       121 ~~~--------------------~~~i~i~d~~t  134 (134)
                      ++.                    +++|.+||+.+
T Consensus       204 sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          204 SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             EccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            874                    68999999863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.67  E-value=3.6e-06  Score=51.29  Aligned_cols=123  Identities=14%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      |..+|.. ++....+........++...+++. +..++.++.+..+|.. +... ..+......+..+...+++..++..
T Consensus       119 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~d~~g~l~v~t  194 (330)
T 3hxj_A          119 LYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK-WRFKTNDAITSAASIGKDGTIYFGS  194 (330)
T ss_dssp             EEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE-EEEECSSCCCSCCEECTTCCEEEES
T ss_pred             EEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe-EEEecCCCceeeeEEcCCCEEEEEe
Confidence            5567776 777776665545555467766665 6667777889999987 4432 2333344556666666666654443


Q ss_pred             eCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                         +.+..+| .+++....... ...+.++..+++|...+.+.++.|..+|.
T Consensus       195 ---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          195 ---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP  242 (330)
T ss_dssp             ---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred             ---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC
Confidence               7788898 67766655553 35577888888887777777777777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.65  E-value=7.3e-07  Score=60.60  Aligned_cols=108  Identities=14%  Similarity=0.078  Sum_probs=71.0

Q ss_pred             eeeEEEc-cCCcEEEEecC-C----CeEEEEECCCC-CCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC-----CcEEEE
Q psy6446          23 KSSVHFA-TDSYRLATGSN-D----KNIRIYDLNKP-DAEPTVYRGHSSGIKHVQFFKNNTRLISCAED-----KTVRLW   90 (134)
Q Consensus        23 ~~~~~~~-~~~~~l~~~~~-d----~~v~i~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~   90 (134)
                      .....|| |||++|+.+.. +    ..|+++|+.++ ......+.   .....+.|+||++.|+....+     ..|..+
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            4558999 99998875432 2    35999999887 53221121   123578899999988766654     257888


Q ss_pred             ecCCCcee--EEEec--CCCCeEEEEccCCcEEEEec----CCeEEEEeCC
Q psy6446          91 DVSASAEV--QKLEF--GAVPNSLEISRDGTTITVTH----GSCVTFLDAN  133 (134)
Q Consensus        91 d~~~~~~~--~~~~~--~~~v~~~~~~~~~~~l~~~~----~~~i~i~d~~  133 (134)
                      ++.++...  ..+..  ......+.|+|||++|+...    ...|.++|+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            88776422  22222  23346788999999887542    3578888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=2.4e-06  Score=53.25  Aligned_cols=123  Identities=11%  Similarity=0.037  Sum_probs=80.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +..+|..+|+.+.......  ...+..  ++..++.++.++.+..+|..+++... ... ...........  .+..++.
T Consensus       251 l~~~d~~tG~~~w~~~~~~--~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~--~~~~l~v  323 (376)
T 3q7m_A          251 LTALDLRSGQIMWKRELGS--VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW-TQSDLLHRLLTSPVL--YNGNLVV  323 (376)
T ss_dssp             EEEEETTTCCEEEEECCCC--EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE-EECTTTTSCCCCCEE--ETTEEEE
T ss_pred             EEEEECCCCcEEeeccCCC--CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE-eecccCCCcccCCEE--ECCEEEE
Confidence            5678888898887765322  221333  46678888888999999998876432 222 11122223333  3567888


Q ss_pred             eeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      ++.+|.+..+|..+++....... ...+.......++.+++.+.+|.|..||
T Consensus       324 ~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          324 GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            88999999999999998887765 3333222222356666667889999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=1.8e-06  Score=53.41  Aligned_cols=113  Identities=7%  Similarity=0.018  Sum_probs=72.6

Q ss_pred             CCceeeEEEccCCcEEEEecC--CCeEEEEECCCCCCC-----CeEEeCCCCCEeEEEEeeCCCEEEEeeC-----CCcE
Q psy6446          20 HIVKSSVHFATDSYRLATGSN--DKNIRIYDLNKPDAE-----PTVYRGHSSGIKHVQFFKNNTRLISCAE-----DKTV   87 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i   87 (134)
                      ..... ++++++|+.+++...  ++.+++|.+..+...     ......+-..+..+++.++++.+++-..     ++.|
T Consensus        17 ~~p~~-va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGN-ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEE-EEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcce-EEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            34445 999999998888532  342444444332110     0001134467899999999876655433     5789


Q ss_pred             EEEecCCCceeEEEecC-------CCCeEEEEccCCcEE-EEe----cCCeEEEEeCC
Q psy6446          88 RLWDVSASAEVQKLEFG-------AVPNSLEISRDGTTI-TVT----HGSCVTFLDAN  133 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l-~~~----~~~~i~i~d~~  133 (134)
                      .+||+.+++....+...       ..+..+++++++..+ ++.    .++.|.+||+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            99999998877766532       345899999865444 443    35899999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=1.4e-05  Score=51.05  Aligned_cols=129  Identities=8%  Similarity=0.037  Sum_probs=78.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC-CC----eEEEEECCCCCCCCeEEeCCCCCEeEEEEee-CC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN-DK----NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~   75 (134)
                      |+.+|+.+++............. ++|+++++.|+++.. ++    .+...+..........+. .......++++| ++
T Consensus       161 I~~id~~~~~v~~~~~~~~~P~~-ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g  238 (430)
T 3tc9_A          161 TRLIDFEKEYVSTVYSGLSKVRT-ICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPING  238 (430)
T ss_dssp             EEEEETTTTEEEEEECCCSCEEE-EEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTC
T ss_pred             EEEEECCCCEEEEEecCCCCcce-EEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCC
Confidence            56778776555444443344445 999999996666543 22    344444332211112222 234467888999 66


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      ..+++-..++.|..++...+........  ......++|+|++++|..+  ..+.|..++.
T Consensus       239 ~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          239 ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            6666666778899999876654333332  2357899999999965544  4688888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.62  E-value=8e-06  Score=50.91  Aligned_cols=128  Identities=8%  Similarity=0.047  Sum_probs=79.4

Q ss_pred             eeEeecCCCceeeEEeeCC---------CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPH---------IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~   72 (134)
                      |..+|..+|+.+..+....         ..+. .....++..+++++.++.+..+|..+++... .............. 
T Consensus        65 v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~p~~-  141 (376)
T 3q7m_A           65 VKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGTVAW-QTKVAGEALSRPVV-  141 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEEE-EEECSSCCCSCCEE-
T ss_pred             EEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCCEEE-EEeCCCceEcCCEE-
Confidence            6788999999988877421         1222 1222246678888889999999998876432 22222211112222 


Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCC------eEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP------NSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                       .+..++.++.++.+..+|..+++..........+      ...... ++..++.+.++.+..+|.++
T Consensus       142 -~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          142 -SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             -ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTT
T ss_pred             -ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCC
Confidence             2457778888999999999999988877654332      122222 34444444678888888753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.61  E-value=7.1e-06  Score=54.26  Aligned_cols=133  Identities=10%  Similarity=-0.023  Sum_probs=83.5

Q ss_pred             eeEeecCCCceeeEEeeCC-------Cceee--EEEccCCc---EEEEecCCCeEEEEECCCCCCCCeEEeCC-------
Q psy6446           2 GTVWDAVSGEELHSFQHPH-------IVKSS--VHFATDSY---RLATGSNDKNIRIYDLNKPDAEPTVYRGH-------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~---~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------   62 (134)
                      |..+|..+|+.+..++...       ....-  ....++|+   .++.++.+|.++++|..+++.........       
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            6778999999999887221       11111  22224674   57788899999999998876432211111       


Q ss_pred             -----CCCE--------------------------eEEEEeeCCCEEEEee-----------------------------
Q psy6446          63 -----SSGI--------------------------KHVQFFKNNTRLISCA-----------------------------   82 (134)
Q Consensus        63 -----~~~v--------------------------~~~~~~~~~~~l~~~~-----------------------------   82 (134)
                           ..++                          ..++++|+...++...                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                 0011                          2456777766665432                             


Q ss_pred             --------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCC-cEEEEecCCeEEEEeCCC
Q psy6446          83 --------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDG-TTITVTHGSCVTFLDANS  134 (134)
Q Consensus        83 --------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~i~d~~t  134 (134)
                              .++.+..+|..+++..........+....+...+ ..++.+.++.|+.+|.++
T Consensus       434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence                    3478999999999998888765554443333334 444445789999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=9.3e-06  Score=54.65  Aligned_cols=132  Identities=11%  Similarity=0.069  Sum_probs=85.5

Q ss_pred             eeEeecCCCceeeEEeeC----------CCceeeEEEccCCc---EEEEecCCCeEEEEECCCCCCCCeEEeCC------
Q psy6446           2 GTVWDAVSGEELHSFQHP----------HIVKSSVHFATDSY---RLATGSNDKNIRIYDLNKPDAEPTVYRGH------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------   62 (134)
                      |..+|..+|+.+..++..          ...+. ..+..+|+   .++.++.+|.++++|..+++.+.......      
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~-~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL-AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE-EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             EEEEcCCCCceeeEeecCCCccccccCCCCcEE-EEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            678899999999988732          11122 23334665   68899999999999998876431110000      


Q ss_pred             ----C-CC------------------------EeEEEEeeCCCEEEEe--------------------------------
Q psy6446          63 ----S-SG------------------------IKHVQFFKNNTRLISC--------------------------------   81 (134)
Q Consensus        63 ----~-~~------------------------v~~~~~~~~~~~l~~~--------------------------------   81 (134)
                          . .+                        -..++++|+...++..                                
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                0 00                        0126677765554431                                


Q ss_pred             ----eCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          82 ----AEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        82 ----~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                          ..++.|..||..+++...............+...+.+++.+ .++.++.||.++
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence                12377999999999998888776665555555566666655 689999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=1.3e-05  Score=54.13  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=69.6

Q ss_pred             eeEeecCCCceeeEEeeCCCc--------------------------------eeeEEEccCCcEEEEecCCC-------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIV--------------------------------KSSVHFATDSYRLATGSNDK-------   42 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~~d~-------   42 (134)
                      |+.+|..+|+.+..+......                                ...+.++|++..++.+..++       
T Consensus       192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~  271 (677)
T 1kb0_A          192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKV  271 (677)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCC
Confidence            678999999999888732111                                12367888888888887664       


Q ss_pred             ------------eEEEEECCCCCCCCeEEeC-CC-------CCEeEEEEeeCC---CEEEEeeCCCcEEEEecCCCceeE
Q psy6446          43 ------------NIRIYDLNKPDAEPTVYRG-HS-------SGIKHVQFFKNN---TRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        43 ------------~v~i~~~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                                  .|..+|.++++........ |.       .....+....++   ..++.++.+|.+.++|..+++.+.
T Consensus       272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence                        4888999887644322211 21       122333444477   678899999999999999999887


Q ss_pred             EEe
Q psy6446         100 KLE  102 (134)
Q Consensus       100 ~~~  102 (134)
                      ...
T Consensus       352 ~~~  354 (677)
T 1kb0_A          352 AKN  354 (677)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.52  E-value=3.1e-05  Score=48.11  Aligned_cols=129  Identities=9%  Similarity=0.214  Sum_probs=83.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc----CCc---EEEEecC---CCeEEEEECCCCCCCCeEEeC------CC-C
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT----DSY---RLATGSN---DKNIRIYDLNKPDAEPTVYRG------HS-S   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~---d~~v~i~~~~~~~~~~~~~~~------~~-~   64 (134)
                      +.+||+ +|+.++.+.. ..... +..-|    .|+   ++++...   ++.+.+|+++...........      .. .
T Consensus        52 L~Vydl-~G~~l~~~~~-g~~nn-VD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~  128 (355)
T 3amr_A           52 LVVYSL-DGKMLHSYNT-GKLNN-VDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAIN  128 (355)
T ss_dssp             EEEEET-TSCEEEEECC-SCEEE-EEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCS
T ss_pred             EEEEcC-CCcEEEEccC-CCccc-EEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCC
Confidence            679999 7999888864 33333 55544    232   2333333   578999977432222222211      11 4


Q ss_pred             CEeEEEE--eeC-CC-EEEEeeCCCcEEEEecC-------CCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          65 GIKHVQF--FKN-NT-RLISCAEDKTVRLWDVS-------ASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        65 ~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+..+++  +|. ++ +++....++.+..|++.       +.+.++.+...+.+..+..++....|..+ .+..|..||.
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da  208 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSA  208 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence            5667777  563 43 57788888999999883       34567778788889999999887777776 5666877774


Q ss_pred             C
Q psy6446         133 N  133 (134)
Q Consensus       133 ~  133 (134)
                      +
T Consensus       209 ~  209 (355)
T 3amr_A          209 E  209 (355)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.42  E-value=6.6e-05  Score=49.87  Aligned_cols=133  Identities=15%  Similarity=0.046  Sum_probs=79.8

Q ss_pred             eeEeecCCCceeeEEee--CC-----CceeeEEEc---cCCc---EEEEecCCCeEEEEECCCCCCCCeEEeCC------
Q psy6446           2 GTVWDAVSGEELHSFQH--PH-----IVKSSVHFA---TDSY---RLATGSNDKNIRIYDLNKPDAEPTVYRGH------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~--~~-----~~~~~~~~~---~~~~---~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------   62 (134)
                      |..+|..+|+.+..++.  +.     ....-+.+.   .+|+   .++.++.+|.++++|..+++.+.......      
T Consensus       293 v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  372 (582)
T 1flg_A          293 QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWAS  372 (582)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEE
T ss_pred             EEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccc
Confidence            56789999999998873  21     111112222   4663   68889999999999998865432111110      


Q ss_pred             ------CCC--------------------------------EeEEEEeeCCCEEEEee----------------------
Q psy6446          63 ------SSG--------------------------------IKHVQFFKNNTRLISCA----------------------   82 (134)
Q Consensus        63 ------~~~--------------------------------v~~~~~~~~~~~l~~~~----------------------   82 (134)
                            ..+                                -..++++|+...++...                      
T Consensus       373 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  452 (582)
T 1flg_A          373 HIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLG  452 (582)
T ss_dssp             EECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             cccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceec
Confidence                  000                                01345555444443321                      


Q ss_pred             -----------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-EecCCeEEEEeCCC
Q psy6446          83 -----------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VTHGSCVTFLDANS  134 (134)
Q Consensus        83 -----------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~i~d~~t  134 (134)
                                 .++.|..||+.+++.+.......+...-.....+.+++ .+.|+.++.||.+|
T Consensus       453 ~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~t  516 (582)
T 1flg_A          453 MGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS  516 (582)
T ss_dssp             EEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence                       25789999999999988877654443322223344444 44789999999864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.38  E-value=3.6e-05  Score=46.86  Aligned_cols=123  Identities=11%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      |..+|.. ++.+..+......+.++...+++...+ ++  +.+..+| .++... .........+.++...+++. +..+
T Consensus       159 l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~-~~~~~~~~~~~~~~~~~~g~-l~v~  231 (330)
T 3hxj_A          159 LYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEK-WNFYAGYWTVTRPAISEDGT-IYVT  231 (330)
T ss_dssp             EEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEE-EEECCSSCCCSCCEECTTSC-EEEE
T ss_pred             EEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEE-EEEccCCcceeceEECCCCe-EEEE
Confidence            4567777 777777765445555577777776444 44  6788888 443322 22333345567777766654 4555


Q ss_pred             eCCCcEEEEecCCCceeEEEecC-CCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          82 AEDKTVRLWDVSASAEVQKLEFG-AVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        82 ~~d~~i~~~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      +.++.+..+|. +++........ ..+..+...+++...+++.+|.|..+|.
T Consensus       232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred             cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence            66777777773 55555555533 2344566666777666666777887774

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.35  E-value=9.4e-05  Score=45.25  Aligned_cols=128  Identities=15%  Similarity=0.098  Sum_probs=77.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCC-CCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDA-EPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |..+|..+++............. ++++|+++.|+.+ ...+.|..+++..... ....+....+ ...+++.++|+.++
T Consensus       167 v~~~d~~~~~~~~~~~~~~~p~g-ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          167 LIKYDPSTKETTLLLKELHVPGG-AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEEEETTTTEEEEEEEEESCCCE-EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred             EEEEeCCCCEEEEeccCCccCcc-eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence            44556555543322222223334 8999999866655 5568999999875321 1112222233 78899999998766


Q ss_pred             EeeC----------CCcEEEEecCCCceeEEEecC-----CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          80 SCAE----------DKTVRLWDVSASAEVQKLEFG-----AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~----------d~~i~~~d~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +...          .+.|..+|. .++.+..+...     ..+..+++ .++++++++ ..+.|..+++.
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            6544          456888886 46666666532     24566666 456655554 56899998874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.30  E-value=0.00015  Score=48.41  Aligned_cols=132  Identities=9%  Similarity=-0.011  Sum_probs=79.8

Q ss_pred             eeEeecCCCceeeEEeeCCC----------ceeeEEEc-cCC---cEEEEecCCCeEEEEECCCCCCCCeEEeCC-----
Q psy6446           2 GTVWDAVSGEELHSFQHPHI----------VKSSVHFA-TDS---YRLATGSNDKNIRIYDLNKPDAEPTVYRGH-----   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~-~~~---~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----   62 (134)
                      |..+|..+|+.+..++....          .+. +... .+|   ..++.++.+|.++++|..+++.+.......     
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            56789999999998873211          111 2222 467   567778999999999998876432211000     


Q ss_pred             ------CC-CE--------------------------eEEEEeeCCCEEEEe----------------------------
Q psy6446          63 ------SS-GI--------------------------KHVQFFKNNTRLISC----------------------------   81 (134)
Q Consensus        63 ------~~-~v--------------------------~~~~~~~~~~~l~~~----------------------------   81 (134)
                            .+ ++                          ..++++|+...++..                            
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                  00 00                          234566654444331                            


Q ss_pred             -----e------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-EecCCeEEEEeCCC
Q psy6446          82 -----A------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VTHGSCVTFLDANS  134 (134)
Q Consensus        82 -----~------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~i~d~~t  134 (134)
                           +      .++.+..||+.+++.+.......+...-.+...+..++ .+.|+.++.||.+|
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t  503 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT  503 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence                 1      34789999999999888877654433222233344444 45789999999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.28  E-value=0.00019  Score=46.04  Aligned_cols=129  Identities=10%  Similarity=0.042  Sum_probs=75.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC---Ce-EEEEECCCCCCCCeEEeCCCCCEeEEEEee-CCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND---KN-IRIYDLNKPDAEPTVYRGHSSGIKHVQFFK-NNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~-v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   76 (134)
                      |+.+|..+++............. ++++++++++++....   .. +...+..........+. .......+++.| ++.
T Consensus       164 I~~id~~~g~v~~~~~~~~~P~g-iavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~  241 (433)
T 4hw6_A          164 FRHVDFVNQYVDIKTTNIGQCAD-VNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGK  241 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSCEEE-EEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCC
T ss_pred             EEEEECCCCEEEEeecCCCCccE-EEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCe
Confidence            67778776665544433333444 9999999944443321   12 33333222111111221 234567788999 666


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEE-ecC--CCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKL-EFG--AVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~-~~~--~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      ..++-..++.|..+|..++.....+ ...  .....++++|++.+|..+  ..+.|..++.
T Consensus       242 lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          242 IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            6666667788999998877652322 221  223469999999855544  4588988774

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=3.1e-05  Score=52.84  Aligned_cols=129  Identities=10%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             eeEeecCCC-ceee-EEeeCCCceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCCC-eEEe-CCCCCEeEEEEe
Q psy6446           2 GTVWDAVSG-EELH-SFQHPHIVKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAEP-TVYR-GHSSGIKHVQFF   72 (134)
Q Consensus         2 i~v~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~-~~~~-~~~~~v~~~~~~   72 (134)
                      |+++|+.++ +.+. .+..   ....+.|+||++.|+....+     ..|+.+++.++.... ..+. ........+.|+
T Consensus       203 l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S  279 (751)
T 2xe4_A          203 IEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA  279 (751)
T ss_dssp             EEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred             EEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence            788898888 6322 1211   23348999999888776654     367888887653221 2222 223446788999


Q ss_pred             eCCCEEEEeeC---CCcEEEEecCCCc-ee--EEEec--CCCCeEEEEccCCcEEEEe-cC----CeEEEEeCC
Q psy6446          73 KNNTRLISCAE---DKTVRLWDVSASA-EV--QKLEF--GAVPNSLEISRDGTTITVT-HG----SCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~~--~~~v~~~~~~~~~~~l~~~-~~----~~i~i~d~~  133 (134)
                      ||+++|+....   ...+.++|+.++. ..  ..+..  ......+.|+..+.+++.+ .+    ..|..+|+.
T Consensus       280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence            99999875543   3458888987652 22  22221  2333445544444444444 22    367666653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.27  E-value=0.00013  Score=43.44  Aligned_cols=130  Identities=8%  Similarity=0.003  Sum_probs=77.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.++|...+.....+.........+++++++..|+ +-...+.|.+++++... ..............++++|++..++.
T Consensus        60 I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv  138 (267)
T 1npe_A           60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYW  138 (267)
T ss_dssp             EEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             EEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEE
Confidence            45666654433322222212233489998655554 54567889999987532 21222222256789999997666554


Q ss_pred             eeC---CCcEEEEecCCCceeEEEe-c-CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          81 CAE---DKTVRLWDVSASAEVQKLE-F-GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~---d~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +..   .+.|..+++.. .....+. . ......++++|++..|..+  ..+.|.++|+.
T Consensus       139 ~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          139 TDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence            443   36788888754 3333332 1 2356889999987665543  45899999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.00021  Score=43.67  Aligned_cols=107  Identities=12%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             eeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeC-----CCCCEeEEEEee-CCCEEEEeeC-------------
Q psy6446          24 SSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRG-----HSSGIKHVQFFK-NNTRLISCAE-------------   83 (134)
Q Consensus        24 ~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-------------   83 (134)
                      ..+++.+ +++ |+++...+.+..+|..++..  ..+..     .......+++.+ +++..++-..             
T Consensus        83 ~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           83 YDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             EEEEEETTTTE-EEEEETTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             ceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            3488887 555 55444445578888764321  12211     113468899999 8877665432             


Q ss_pred             ----CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          84 ----DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        84 ----d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                          ++.+..+|..+++.............++++|++..+..+  ..+.|.+|++.
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence                356888887766543333333456789999999866554  45899999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.18  E-value=6.3e-05  Score=49.83  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=52.7

Q ss_pred             CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCC--eEEEEccCCcE
Q psy6446          41 DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISRDGTT  118 (134)
Q Consensus        41 d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v--~~~~~~~~~~~  118 (134)
                      ++.+..+|+.+++...+. . +...+....+...+..++.++.|+.+..+|.++++.+..+.....+  ..+.+..+|+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~-~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTK-W-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEE-E-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEe-c-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            578899999887644322 2 1222333333445677788899999999999999999988865433  33445578875


Q ss_pred             EEE
Q psy6446         119 ITV  121 (134)
Q Consensus       119 l~~  121 (134)
                      ++.
T Consensus       521 yv~  523 (571)
T 2ad6_A          521 YIG  523 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.18  E-value=0.00037  Score=46.90  Aligned_cols=109  Identities=15%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             EEEcc-CCcEEEEecCCC-----------eEEEEECCCCCCCC-eEE-eCCCCCEeEEEEeeCCCEEEEeeC-CCcEEEE
Q psy6446          26 VHFAT-DSYRLATGSNDK-----------NIRIYDLNKPDAEP-TVY-RGHSSGIKHVQFFKNNTRLISCAE-DKTVRLW   90 (134)
Q Consensus        26 ~~~~~-~~~~l~~~~~d~-----------~v~i~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~   90 (134)
                      .++.+ +++.++.|+.+.           .+.+||..+..-.. ... ..+......+++.++++.++.|+. +..+.+|
T Consensus       191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y  270 (656)
T 1k3i_A          191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  270 (656)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence            67777 888888876432           57889988754221 112 223333345677788999888884 4579999


Q ss_pred             ecCCCceeEEEe--cCCCCeEEEEccCCcEEEEec--C-----CeEEEEeCCC
Q psy6446          91 DVSASAEVQKLE--FGAVPNSLEISRDGTTITVTH--G-----SCVTFLDANS  134 (134)
Q Consensus        91 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~-----~~i~i~d~~t  134 (134)
                      |..+.+....-.  ....-.++...++++.++.|+  +     ..+.+||.++
T Consensus       271 d~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          271 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            988765433221  122224566777888888764  2     4789999753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.00049  Score=44.91  Aligned_cols=129  Identities=10%  Similarity=0.037  Sum_probs=76.8

Q ss_pred             eeEeecCCCceeeEEeeCC----CceeeEEE-------ccCCcEEEEecCCC-------eEEEEECCCCCCCC-----eE
Q psy6446           2 GTVWDAVSGEELHSFQHPH----IVKSSVHF-------ATDSYRLATGSNDK-------NIRIYDLNKPDAEP-----TV   58 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~l~~~~~d~-------~v~i~~~~~~~~~~-----~~   58 (134)
                      |++.|+.++..........    .... ++|       +++++.|+++...+       .+.+++........     ..
T Consensus       164 i~~ID~~~~~v~~l~~~~~~~~~~p~~-ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~  242 (496)
T 3kya_A          164 IQLIDLKNRMLSSPLNINTIPTNRIRS-IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQL  242 (496)
T ss_dssp             EEEEETTTTEEEEEECCTTSSCSBEEE-EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEE
T ss_pred             EEEEECCCCEEEEEEccCccccCCCcE-EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeeccccee
Confidence            5677777666554443221    2344 999       99998666665443       26666544311111     22


Q ss_pred             EeCCCCCEeEEEEeeCCCE-EEEeeCCCcEEEEecC-------CCce-----------eEE-Eec--CCCCeEEEEccCC
Q psy6446          59 YRGHSSGIKHVQFFKNNTR-LISCAEDKTVRLWDVS-------ASAE-----------VQK-LEF--GAVPNSLEISRDG  116 (134)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~-------~~~~-----------~~~-~~~--~~~v~~~~~~~~~  116 (134)
                      +.. ......++++|++.. +++-..++.|..+|+.       ++..           ... +..  ......++|+|+|
T Consensus       243 v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G  321 (496)
T 3kya_A          243 IAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTG  321 (496)
T ss_dssp             EEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTS
T ss_pred             ecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCC
Confidence            221 234567888995544 5556677889999987       4443           112 222  3446899999999


Q ss_pred             cEEEEe--cCCeEEEEeC
Q psy6446         117 TTITVT--HGSCVTFLDA  132 (134)
Q Consensus       117 ~~l~~~--~~~~i~i~d~  132 (134)
                      .+|..+  ..+.|+.++.
T Consensus       322 ~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEec
Confidence            965544  4588888653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.10  E-value=0.00012  Score=48.67  Aligned_cols=78  Identities=12%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCe--EEEEccCCcE
Q psy6446          41 DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPN--SLEISRDGTT  118 (134)
Q Consensus        41 d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~--~~~~~~~~~~  118 (134)
                      +|.+..||+.+++..-+....  .++..-.....+..++.++.|+.++.+|.++++.+..+.....+.  -+.+..+|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            578889999887644322211  222222223356778889999999999999999999988765543  3677788864


Q ss_pred             EE
Q psy6446         119 IT  120 (134)
Q Consensus       119 l~  120 (134)
                      .+
T Consensus       543 Yv  544 (582)
T 1flg_A          543 YL  544 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.10  E-value=3.1e-05  Score=52.36  Aligned_cols=77  Identities=13%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |..||+.+|+.+..++....... ..+...+.+++.++.|+.++.||.++++.+.....++.....-+.|..+|+..+
T Consensus       457 l~A~D~~tG~~~W~~~~~~~~~~-g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          457 LIAWDPVKQQAAWEVPYVTIFNG-GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCC-CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEECCCCCeEeEccCCCCccC-ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            67899999999999986655544 455667889999999999999999998765433333333335577778886544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.06  E-value=0.00041  Score=41.22  Aligned_cols=108  Identities=9%  Similarity=-0.017  Sum_probs=66.6

Q ss_pred             eeEEEccCCcEEEEecC---CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE-eeCCCcEEEEecCCCceeE
Q psy6446          24 SSVHFATDSYRLATGSN---DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS-CAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~   99 (134)
                      ..++++|++..|+.+..   .+.|..++++... ..............+++++++..|+. -...+.|..+|........
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            34899996655554443   4688888876432 21122233356789999998776654 4456789999987554433


Q ss_pred             EEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         100 KLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       100 ~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..........++.. ++..+++. .++.|..+|..
T Consensus       204 ~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          204 VLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence            33333344567654 34444444 45899999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.04  E-value=0.00053  Score=42.04  Aligned_cols=131  Identities=11%  Similarity=-0.006  Sum_probs=80.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCC---CCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKP---DAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |+..|+.+.+....+........ ++|++.++.| .+-..++.|..+++...   ..........-.....+++.+.+..
T Consensus        12 I~~i~~~~~~~~~~~~~~~~p~g-~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~   90 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (316)
T ss_dssp             EEEEETTSCCCEEEECSCSSEEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             EEEEECCCcceEehhcCCCceEE-EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe
Confidence            67788877766555554455555 9999865554 45556789999998751   2222222222245688999875554


Q ss_pred             E-EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEE-Ee-cC-CeEEEEeCC
Q psy6446          78 L-ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTIT-VT-HG-SCVTFLDAN  133 (134)
Q Consensus        78 l-~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~-~~-~~i~i~d~~  133 (134)
                      | ++-...+.|.+.+........... .......++++|.+..|. +. .. +.|...++.
T Consensus        91 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            4 455667889999987544333333 235678999998665544 33 33 678877653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.03  E-value=0.00054  Score=41.65  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=74.1

Q ss_pred             CceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCC--cE
Q psy6446          10 GEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK--TV   87 (134)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i   87 (134)
                      .+.+..+........ ++|+++++.+++-..++.|..+|....  ..... .....+..+++.++++.+++.....  .+
T Consensus        22 ~~~~~~~p~~~~peg-ia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           22 AKIITSFPVNTFLEN-LASAPDGTIFVTNHEVGEIVSITPDGN--QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             EEEEEEECTTCCEEE-EEECTTSCEEEEETTTTEEEEECTTCC--EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             ceEeEeCCCCCCcce-EEECCCCCEEEEeCCCCeEEEECCCCc--eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            344555543334444 999999987777778899999987652  22222 2345688999999998666554332  46


Q ss_pred             EEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          88 RLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ..+|..+++........  .....++..+++..+++. .++.|..+|..
T Consensus        98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence            77777777654333321  223455555555555554 46888888864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.00  E-value=0.00077  Score=42.52  Aligned_cols=130  Identities=9%  Similarity=-0.054  Sum_probs=78.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE-E
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-I   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~   79 (134)
                      |+..++..+.....+........ ++|++.+..| .+-...+.|..+++.... ..............+++.+.+..| +
T Consensus        98 I~~i~~~~~~~~~~~~~~~~~~g-l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLNNLENAIA-LDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             EEEECTTSCCCEEEECSCSCEEE-EEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ceeeccCCCcEEEEecCCCccEE-EEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            45566655444444444444555 9999755544 555567889999987643 222222223456788998755554 4


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe--cC-CeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT--HG-SCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~--~~-~~i~i~d~~  133 (134)
                      +-...+.|.+.++........+.. ......++++|.+..|..+  .. +.|..+++.
T Consensus       176 ~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          176 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             EETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            555567888888765443333322 2456899999877655543  34 678877754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.00  E-value=0.0004  Score=46.93  Aligned_cols=131  Identities=11%  Similarity=0.096  Sum_probs=79.7

Q ss_pred             eeEeecCCCceeeEEeeCC-----CceeeEEEccCCcEEEEecC------CCeEEEEECCCCCCCCeEEeC--C------
Q psy6446           2 GTVWDAVSGEELHSFQHPH-----IVKSSVHFATDSYRLATGSN------DKNIRIYDLNKPDAEPTVYRG--H------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~--~------   62 (134)
                      |..+|..+|+.+..++...     ........  .+..++++..      ++.+..+|..+++........  .      
T Consensus       129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~  206 (668)
T 1kv9_A          129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE  206 (668)
T ss_dssp             EEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred             EEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccc
Confidence            5778999999998887421     11111122  2345555543      589999999887644322110  0      


Q ss_pred             ----------------------CCCEeEEEEeeCCCEEEEeeCCC-------------------cEEEEecCCCceeEEE
Q psy6446          63 ----------------------SSGIKHVQFFKNNTRLISCAEDK-------------------TVRLWDVSASAEVQKL  101 (134)
Q Consensus        63 ----------------------~~~v~~~~~~~~~~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~  101 (134)
                                            ......+++.|+...++.+..++                   .|..+|..+++....+
T Consensus       207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~  286 (668)
T 1kv9_A          207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY  286 (668)
T ss_dssp             SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             ccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence                                  01112467888778887776665                   3999999999998887


Q ss_pred             ecC----------CCCeEEEEccCCc---EEEEe-cCCeEEEEeCCC
Q psy6446         102 EFG----------AVPNSLEISRDGT---TITVT-HGSCVTFLDANS  134 (134)
Q Consensus       102 ~~~----------~~v~~~~~~~~~~---~l~~~-~~~~i~i~d~~t  134 (134)
                      ...          .+.....+..+|+   .++.+ .+|.++++|.++
T Consensus       287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence            642          1222222334664   44444 679999998754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.0012  Score=42.39  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             eEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC-CC----cEEEEecCCCcee
Q psy6446          25 SVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE-DK----TVRLWDVSASAEV   98 (134)
Q Consensus        25 ~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~~~~   98 (134)
                      .++++| ++..|+++...+.|+.+|+.... . ..+.........++++++++.|+.+.. ++    .+...+. .+...
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~  217 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-V-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK  217 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTE-E-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCE-E-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence            388997 45566666555788889987643 2 233334566899999999996665543 22    2333432 33222


Q ss_pred             --EEEecCCCCeEEEEcc-CCcEEEEe-cCCeEEEEeCC
Q psy6446          99 --QKLEFGAVPNSLEISR-DGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        99 --~~~~~~~~v~~~~~~~-~~~~l~~~-~~~~i~i~d~~  133 (134)
                        ..+........++++| ++.++++. .++.|..+|..
T Consensus       218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          218 VITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             SEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             eeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence              3333345568899999 66666665 56899998864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.84  E-value=0.0015  Score=40.24  Aligned_cols=131  Identities=10%  Similarity=0.007  Sum_probs=78.5

Q ss_pred             eeEeecCCCc--eeeEEeeCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-E
Q psy6446           2 GTVWDAVSGE--ELHSFQHPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-R   77 (134)
Q Consensus         2 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   77 (134)
                      |+..|+....  ....+......+. +.|++. +..+.+-...+.|..++++............-.....+++.+.+. .
T Consensus        15 I~~i~l~~~~~~~~~~~~~~~~~~~-ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~l   93 (318)
T 3sov_A           15 LRLVDATNGKENATIVVGGLEDAAA-VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL   93 (318)
T ss_dssp             EEEEETTCTTSCCEEEEEEEEEEEE-EEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEE
T ss_pred             EEEEECCCCceEEEEEecCCCccEE-EEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeE
Confidence            5677776553  2222333334444 899985 445555566788999998765322223333334567899987554 4


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--c-CCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--H-GSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~-~~~i~i~d~~  133 (134)
                      .++-...+.|.++++.......... .......++++|.+..|..+  . .+.|...++.
T Consensus        94 y~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           94 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            4555567789999986543332222 23456889999876555543  2 4677777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.79  E-value=0.0018  Score=40.06  Aligned_cols=109  Identities=8%  Similarity=0.092  Sum_probs=73.4

Q ss_pred             eeEEE---ccCCcEEEEec-------------CCCeEEEEECC---CCCCCCeEE-eC-----------CCCCEeEEEEe
Q psy6446          24 SSVHF---ATDSYRLATGS-------------NDKNIRIYDLN---KPDAEPTVY-RG-----------HSSGIKHVQFF   72 (134)
Q Consensus        24 ~~~~~---~~~~~~l~~~~-------------~d~~v~i~~~~---~~~~~~~~~-~~-----------~~~~v~~~~~~   72 (134)
                      ..+.|   .|+++++++..             .+..+..+|+.   +++.....- ..           .......++..
T Consensus        66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD  145 (334)
T 2p9w_A           66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD  145 (334)
T ss_dssp             EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred             eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence            45899   68877776533             25779999998   655432211 11           11347899999


Q ss_pred             eCCCEEEEeeCC-CcEEEEecCCCceeEEEe--c-----CCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          73 KNNTRLISCAED-KTVRLWDVSASAEVQKLE--F-----GAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ++|+..++.+.. +.|...+.... ....+.  .     ....+.++++|+|..|++. ..+.|..+|++
T Consensus       146 ~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          146 RDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             TTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            999999988877 88777776533 222222  1     1125699999999887765 57899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.78  E-value=0.002  Score=40.14  Aligned_cols=130  Identities=9%  Similarity=-0.049  Sum_probs=78.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE-E
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-I   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~   79 (134)
                      |+..++........+........ ++|++....| .+-...+.|..+++..... .............+++.+.+..| +
T Consensus        55 I~~i~~~g~~~~~~~~~~~~~~~-l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           55 IRQVLPHRSEYTLLLNNLENAIA-LDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             EEEECTTSCCEEEEECSCSCEEE-EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             eEEEeCCCCeeEEeecCCCceEE-EEEeccccEEEEEeccCCceEEEecCCCCc-eEEEeCCCCCccEEEEecCCCeEEE
Confidence            44555554443333334444444 9999755555 4555678899999876432 22222233456789998755544 5


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe--cC-CeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT--HG-SCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~--~~-~~i~i~d~~  133 (134)
                      +-...+.|.+.++........... ......++++|.+..|..+  .. +.|..+++.
T Consensus       133 ~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          133 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            555677899999865443333322 2456899999976655543  34 778887754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.69  E-value=0.0032  Score=40.00  Aligned_cols=131  Identities=11%  Similarity=-0.018  Sum_probs=78.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCC---CCCeEEeCCCCCEeEEEEeeCCC-
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPD---AEPTVYRGHSSGIKHVQFFKNNT-   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-   76 (134)
                      |+..|+........+.....+.. ++|++....|+ +-...+.|+.+++....   ...............+++.+.+. 
T Consensus        94 I~~i~l~~~~~~~~~~~~~~~~~-l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~  172 (400)
T 3p5b_L           94 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  172 (400)
T ss_dssp             EEEECTTSCSCEEEECSCSCEEE-EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE
T ss_pred             eEEEccCCcceeEeccccCcceE-EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc
Confidence            45566655544444444445555 99998555554 44567889888887522   12222333445678899987444 


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--c-CCeEEEEeCC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--H-GSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~-~~~i~i~d~~  133 (134)
                      ..++-...+.|.+.++........+. .......++++|.+..|..+  . .+.|...++.
T Consensus       173 lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            44555567789999987655444443 23457899999976655543  2 3677777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.69  E-value=0.0022  Score=38.24  Aligned_cols=108  Identities=9%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCC--CCCCCeEEe-------CCCCCEeEEEEeeCC-CEEEEeeCCCcEEEEec
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNK--PDAEPTVYR-------GHSSGIKHVQFFKNN-TRLISCAEDKTVRLWDV   92 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~   92 (134)
                      ...++|+|.++.|.++.......+|.++.  .........       .+...+..++++|.. .+++.....+.+..+|.
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence            45599999887777776655555555431  111112221       123467899999954 45556667778999996


Q ss_pred             CCCceeEEEecC----------CCCeEEEEccCCcEEEEecCCeEEEEe
Q psy6446          93 SASAEVQKLEFG----------AVPNSLEISRDGTTITVTHGSCVTFLD  131 (134)
Q Consensus        93 ~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~i~i~d  131 (134)
                      . ++.+..+...          .....++|+++|+..+++..+.++.+.
T Consensus       203 ~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          203 V-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             T-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             C-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence            5 5666666533          245899999999977777767777765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.69  E-value=0.0023  Score=38.22  Aligned_cols=110  Identities=18%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             CceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce--
Q psy6446          21 IVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE--   97 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--   97 (134)
                      ..++.++++|+++.| ++...++.|...|.. +.........-....-.+++.+++.++++.-.++.+.++++.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            346669999976655 456778888888887 4432222112225678899988887767766677899998765442  


Q ss_pred             -eEEEec-------CCCCeEEEEccCCcEEEE-ec-CC-eEEEEe
Q psy6446          98 -VQKLEF-------GAVPNSLEISRDGTTITV-TH-GS-CVTFLD  131 (134)
Q Consensus        98 -~~~~~~-------~~~v~~~~~~~~~~~l~~-~~-~~-~i~i~d  131 (134)
                       ......       ......++++|.+..+.+ .. +. .|..|+
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence             222221       223479999999865554 33 32 455544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.66  E-value=0.0028  Score=42.42  Aligned_cols=100  Identities=10%  Similarity=0.046  Sum_probs=62.4

Q ss_pred             eeEeec-CCCceeeEEeeCCCc-----------eeeEEEccCCcE----EEEecCCCeEEEEECCCCCCCCeEEeCC-C-
Q psy6446           2 GTVWDA-VSGEELHSFQHPHIV-----------KSSVHFATDSYR----LATGSNDKNIRIYDLNKPDAEPTVYRGH-S-   63 (134)
Q Consensus         2 i~v~d~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~----l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~-   63 (134)
                      |.-+|. .+|+.+..++.....           ...+++.|.+..    ++.++.|+.+..+|..+++......... . 
T Consensus        75 v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~  154 (599)
T 1w6s_A           75 TFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV  154 (599)
T ss_dssp             EEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG
T ss_pred             EEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCc
Confidence            567898 899999988743221           112455443444    8888889999999999877543221111 0 


Q ss_pred             -CCEeE-EEEeeCCCEEEEee------CCCcEEEEecCCCceeEEEec
Q psy6446          64 -SGIKH-VQFFKNNTRLISCA------EDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        64 -~~v~~-~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~  103 (134)
                       ..+.. ... .++ .++.++      .++.|.-+|..+++.+..+..
T Consensus       155 ~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          155 GSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             TCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             cceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence             01111 111 244 444444      378999999999999887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.66  E-value=0.0033  Score=39.15  Aligned_cols=107  Identities=9%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             EEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE-EeeCC-CcEEEEecCCCceeEEEe
Q psy6446          26 VHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI-SCAED-KTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        26 ~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-~~i~~~d~~~~~~~~~~~  102 (134)
                      +++.+. ++..++-...+.|.+.+++... ..............+++.|.+..++ +-... +.|...++..........
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  199 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  199 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            888874 4455555667889999987533 2222333345678999998666554 44444 678888876433222111


Q ss_pred             c-CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         103 F-GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       103 ~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      . -.....++++|++..|..+  ..+.|..+|+.
T Consensus       200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            1 2346899999877665544  45788888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.61  E-value=0.0042  Score=39.22  Aligned_cols=107  Identities=9%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             EEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-CC-CcEEEEecCCCceeEEEe
Q psy6446          26 VHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-ED-KTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        26 ~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~  102 (134)
                      +++++. +++.++-...+.|.+.+++... ..............+++.|.+..|+... .. +.|...++..........
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            788874 4444555667788888876533 2222333335678999998766655443 34 678888876443333222


Q ss_pred             c-CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         103 F-GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       103 ~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      . -.....++++|++..|..+  ..+.|..+|+.
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            2 2346899999877655543  45788888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.00053  Score=46.63  Aligned_cols=130  Identities=11%  Similarity=-0.043  Sum_probs=72.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCC---CCCCeEEeCCCCCEeEEEEeeCC-C
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKP---DAEPTVYRGHSSGIKHVQFFKNN-T   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~   76 (134)
                      |+..++.+.+....+.....+.. ++|++.+..|+.+ ...+.|+.+++...   ................+++.+.+ +
T Consensus       388 I~~id~~~~~~~~~~~~~~~p~g-la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~  466 (699)
T 1n7d_A          388 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  466 (699)
T ss_dssp             -CEECTTSCCEECCSCCCTTCCC-CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSB
T ss_pred             eEEEeCCCCcceeeeccCcceEE-EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCc
Confidence            45556655544444433344455 8999866666555 45678999988751   11111121122345678887544 4


Q ss_pred             EEEEeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe--cC-CeEEEEeC
Q psy6446          77 RLISCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT--HG-SCVTFLDA  132 (134)
Q Consensus        77 ~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~--~~-~~i~i~d~  132 (134)
                      .+++-...+.|.+.++........+.. ......++++|.+.+|+.+  .. +.|..+++
T Consensus       467 LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             EEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            445555667899999875443333322 2456788999876555443  22 56766654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.50  E-value=0.0055  Score=42.18  Aligned_cols=107  Identities=9%  Similarity=0.059  Sum_probs=63.9

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      +.++...+++...+ ++.++.+..|+..+..............|.++...+++...+ +..++.+..||..+++... +.
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-~~  251 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKN-YL  251 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEE-EC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEE-ee
Confidence            34477777775444 555445888887654311100112345688888777766554 4444448889977654332 22


Q ss_pred             c---------CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446         103 F---------GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus       103 ~---------~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      .         ...|.++..+++|.+.+++.+ .|.+||..
T Consensus       252 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~  290 (795)
T 4a2l_A          252 HSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG  290 (795)
T ss_dssp             CCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             cCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence            1         245788988989887777655 57777754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.46  E-value=0.012  Score=40.76  Aligned_cols=131  Identities=11%  Similarity=-0.029  Sum_probs=76.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCC---CCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPD---AEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |+..++...+....+........ ++|++... ++++-...+.|+.+++....   .....+.........+++.+.++.
T Consensus       406 Ir~i~l~~~~~~~l~~~~~~~~g-l~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~  484 (791)
T 3m0c_C          406 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  484 (791)
T ss_dssp             EEEECTTSCCCEEEECSCSSEEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eeEeeccCCcceeeecCCCceEE-EeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc
Confidence            34455554444333334444555 89988544 44555566788888887531   122233334456788999886655


Q ss_pred             EE-EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--cC-CeEEEEeCC
Q psy6446          78 LI-SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--HG-SCVTFLDAN  133 (134)
Q Consensus        78 l~-~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~-~~i~i~d~~  133 (134)
                      |+ +-...+.|.+.++........+. .......++++|.+..|..+  .. +.|...++.
T Consensus       485 LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence            54 55567789999987554433333 23457899999976555543  23 677777653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.46  E-value=0.0081  Score=38.63  Aligned_cols=106  Identities=22%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC---------e--EEeC------CCCCEeEEEEee---CCCEEEE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP---------T--VYRG------HSSGIKHVQFFK---NNTRLIS   80 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---------~--~~~~------~~~~v~~~~~~~---~~~~l~~   80 (134)
                      .+.. +..+|+|++|+..+. ..|.|..+..+....         .  .+.-      ...+|..+.|+|   ++..|++
T Consensus        67 ~i~q-lvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFH-VISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCE-EEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeE-EEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            3445 999999999998865 578888877322111         1  1221      246799999999   4578999


Q ss_pred             eeCCCcEEEEecCCCc--eeEEEe-------c---CCCCeEEEEccCCcEEEE-e--cCCeEEE
Q psy6446          81 CAEDKTVRLWDVSASA--EVQKLE-------F---GAVPNSLEISRDGTTITV-T--HGSCVTF  129 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~--~~~~~~-------~---~~~v~~~~~~~~~~~l~~-~--~~~~i~i  129 (134)
                      -..|+.|++||+....  +. .+.       .   ...+.+++|.+++-.|.+ +  .+|.|+-
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999999997522  22 222       1   156789999998854443 3  4577754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.44  E-value=0.01  Score=39.57  Aligned_cols=120  Identities=15%  Similarity=0.130  Sum_probs=75.3

Q ss_pred             eeEeecCC----Cc-eeeEEeeCCCceeeEEEccCCcEEEEec-CCCeEEEEECCCC------CC--CC---eEEeCCCC
Q psy6446           2 GTVWDAVS----GE-ELHSFQHPHIVKSSVHFATDSYRLATGS-NDKNIRIYDLNKP------DA--EP---TVYRGHSS   64 (134)
Q Consensus         2 i~v~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~------~~--~~---~~~~~~~~   64 (134)
                      +.|.|.+.    +. .+..+.-++..-. +.++|||+++++++ .+..+.++|+...      +.  +.   .....-.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHG-v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHG-CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCC-EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcc-eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            45667655    22 3444556666666 99999999987765 5778999998741      10  00   11112335


Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEecCCC----------ceeEEEecCCCCeEEEE------ccCCcEEEEe
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSAS----------AEVQKLEFGAVPNSLEI------SRDGTTITVT  122 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~~~  122 (134)
                      .....+|.++|.-..+-.-|.+|..|++...          ..+..+.....+-.+.-      .|+|++|++.
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            6788999999965566778999999998753          33444443333333332      4677777653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.44  E-value=0.013  Score=40.46  Aligned_cols=106  Identities=5%  Similarity=-0.042  Sum_probs=68.4

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-----CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-----GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      .+.++...++++.|..|+.++-+..++..++..  ..+.     .....|.++...++++..+.. . +.+..||..+++
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS  482 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence            445577777887567777767799999876431  1221     123568888887777755544 4 458889987654


Q ss_pred             eeEEEe-------cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          97 EVQKLE-------FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        97 ~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ......       ....|.++..+++|.+.+++. +.|..||.
T Consensus       483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~  524 (795)
T 4a2l_A          483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQ  524 (795)
T ss_dssp             EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEE
T ss_pred             EEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeC
Confidence            332211       124578888899998777766 55777765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.35  E-value=0.0047  Score=42.12  Aligned_cols=106  Identities=14%  Similarity=0.000  Sum_probs=59.6

Q ss_pred             eEEEccCCcEEEEecC--CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE-EeeCCCcEEEEecCCCceeEEE
Q psy6446          25 SVHFATDSYRLATGSN--DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI-SCAEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~  101 (134)
                      .++++|.+..|+.+..  .+.|..+++..... .......-.....++++|++..|+ +-...+.|..+++........+
T Consensus       500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             eEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            3888886555554432  26777777654322 112222234567899998765554 4455678999998643332222


Q ss_pred             ec---CCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446         102 EF---GAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       102 ~~---~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ..   ......+++..+ .++++. ..+.|..+|.
T Consensus       579 ~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          579 EDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             ecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            21   123456666554 333333 4578888875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.35  E-value=0.0057  Score=41.29  Aligned_cols=96  Identities=10%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             EEEcc-CCcEEEEecCCC-----------eEEEEECCCCCCCCeEEe---CCCCC-EeEEEEeeCCCEEEEeeCC-----
Q psy6446          26 VHFAT-DSYRLATGSNDK-----------NIRIYDLNKPDAEPTVYR---GHSSG-IKHVQFFKNNTRLISCAED-----   84 (134)
Q Consensus        26 ~~~~~-~~~~l~~~~~d~-----------~v~i~~~~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~~~~~d-----   84 (134)
                      +.+.. +++.++.|+.++           .+.+||..+..-  ....   -.... -.++...|+++.++.++.+     
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            44443 677788887532           577777765331  1111   11222 2344566799999988754     


Q ss_pred             ------CcEEEEecCCCceeEEEe--cC-CCCeEEEEccCCcEEEEec
Q psy6446          85 ------KTVRLWDVSASAEVQKLE--FG-AVPNSLEISRDGTTITVTH  123 (134)
Q Consensus        85 ------~~i~~~d~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~~~  123 (134)
                            ..+.+||..+.+....-.  .. ....+..+.|+++.++.|+
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence                  468999987765432111  11 1223455678999888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.28  E-value=0.014  Score=37.57  Aligned_cols=103  Identities=11%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             EccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC----CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-------
Q psy6446          28 FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH----SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-------   96 (134)
Q Consensus        28 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------   96 (134)
                      ...++..++.+. ++.||..++.... ..+.++..    -..+..+..+|+|++|+..+.. .|.+..+..+.       
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccc
Confidence            344666666654 3788888887543 33444432    2368889999999999887654 67887776321       


Q ss_pred             -----eeEEEec-------CCCCeEEEEccCC---c-EEEEecCCeEEEEeCC
Q psy6446          97 -----EVQKLEF-------GAVPNSLEISRDG---T-TITVTHGSCVTFLDAN  133 (134)
Q Consensus        97 -----~~~~~~~-------~~~v~~~~~~~~~---~-~l~~~~~~~i~i~d~~  133 (134)
                           ..+.+..       ..+|..+.|+|-+   . .++...|+.|++||+.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~  157 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL  157 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence                 1123332       3578999999955   3 4455799999999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.24  E-value=0.015  Score=37.00  Aligned_cols=108  Identities=10%  Similarity=0.030  Sum_probs=68.8

Q ss_pred             eEEEcc-CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-C-CCcEEEEecCCCceeEEE
Q psy6446          25 SVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-E-DKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        25 ~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~  101 (134)
                      .+++.+ .+++..+-...+.|.+.+++... ..............+++.|.+..|+... . .+.|...++.........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            378877 45555555667888888887533 2223333445688999999666655443 2 467888887644333333


Q ss_pred             ecC-CCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         102 EFG-AVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       102 ~~~-~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ... .....+++++++..|..+  ..+.|..+|+.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            222 456899999887666554  45788888864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.23  E-value=0.012  Score=35.99  Aligned_cols=107  Identities=10%  Similarity=0.027  Sum_probs=67.4

Q ss_pred             eEEEccCC-cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC-C-CcEEEEecCCCceeEEE
Q psy6446          25 SVHFATDS-YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE-D-KTVRLWDVSASAEVQKL  101 (134)
Q Consensus        25 ~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~  101 (134)
                      .+++++.+ +..++-...+.|.+.+++... ..............+++.|.+..++.... . +.|...++.. .....+
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~  158 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL  158 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE
Confidence            38887644 444555667889999987532 22223333456789999986665554443 2 6788888753 333333


Q ss_pred             ec--CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         102 EF--GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       102 ~~--~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ..  -.....++++|++..|..+  ..+.|..+|+.
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            21  2456799999887666544  45789888864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.22  E-value=0.022  Score=38.45  Aligned_cols=130  Identities=11%  Similarity=0.011  Sum_probs=72.6

Q ss_pred             eeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEE-ecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLAT-GSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |+..|+....  ............. ++|++.+..|+. -...+.|..++++...........--.....+++.+.++.|
T Consensus        20 I~~i~~~~~~~~~~~~~~~~~~~~~-ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~l   98 (619)
T 3s94_A           20 LRLVDATNGKENATIVVGGLEDAAA-VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL   98 (619)
T ss_dssp             EEEECCC---------CBCCSCEEE-EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEE
T ss_pred             EEEEeCCCCcceEEEEEcCCCceEE-EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEE
Confidence            5566665432  2222223344455 999986665554 44567888888876432222333333578899999855555


Q ss_pred             -EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--c-CCeEEEEeC
Q psy6446          79 -ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--H-GSCVTFLDA  132 (134)
Q Consensus        79 -~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~-~~~i~i~d~  132 (134)
                       ++-...+.|.+.++.......... .-.....++++|.+..|..+  . .+.|...++
T Consensus        99 y~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~  157 (619)
T 3s94_A           99 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  157 (619)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence             455567889999987544333332 23457889999875555443  2 356665554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.16  E-value=0.017  Score=36.20  Aligned_cols=107  Identities=12%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             EEE--ccC-Cc-EEEEecCCCeEEEEECCC---CC---CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecC--
Q psy6446          26 VHF--ATD-SY-RLATGSNDKNIRIYDLNK---PD---AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS--   93 (134)
Q Consensus        26 ~~~--~~~-~~-~l~~~~~d~~v~i~~~~~---~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--   93 (134)
                      +++  +|. +. ++++...+|.+..|++..   +.   ...+.+. -.+.+..+...+....|+.+-++.-|..++..  
T Consensus       133 lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~  211 (355)
T 3amr_A          133 FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD  211 (355)
T ss_dssp             EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTT
T ss_pred             EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcC
Confidence            555  663 43 578888889999988843   11   1122332 34678888888888899999998777777744  


Q ss_pred             ---CCceeEEEecC---CCCeEEEEc--cCCc-EEEE-e-cCCeEEEEeCC
Q psy6446          94 ---ASAEVQKLEFG---AVPNSLEIS--RDGT-TITV-T-HGSCVTFLDAN  133 (134)
Q Consensus        94 ---~~~~~~~~~~~---~~v~~~~~~--~~~~-~l~~-~-~~~~i~i~d~~  133 (134)
                         +++.+......   ..+..+++.  ++++ ++++ + .++.+.+||.+
T Consensus       212 ~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          212 GGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             SCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence               23344333222   457788874  5554 5555 4 46899999974

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.16  E-value=0.017  Score=36.06  Aligned_cols=99  Identities=14%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-Ce---EEeCCCCCEeEEEEeeC---CCEEEEeeC-C-----Cc
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-PT---VYRGHSSGIKHVQFFKN---NTRLISCAE-D-----KT   86 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~---~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~   86 (134)
                      ..... ++|.|+|+.+++ ..+|.|.+++ . +... ..   ...........++++|+   +..|+.+.. +     +.
T Consensus        31 ~~P~~-ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWA-LAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEE-EEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceE-EEEcCCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            34445 999999985554 5569999998 2 2211 00   01112356899999998   555554433 2     56


Q ss_pred             EEEEecCCCce-----eE-EEec-C---CCCeEEEEccCCcEEEEe
Q psy6446          87 VRLWDVSASAE-----VQ-KLEF-G---AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        87 i~~~d~~~~~~-----~~-~~~~-~---~~v~~~~~~~~~~~l~~~  122 (134)
                      |..++...+..     +. .+.. .   .....++|.|+|.+.++.
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            77887764321     11 1221 1   234689999999766653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.023  Score=39.13  Aligned_cols=107  Identities=13%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe---CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR---GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV   98 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   98 (134)
                      .+.++...++++ |..|+.++-+..++..++..  ..+.   .....|.++...++++.. .+.. +-+..+|..+++..
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCC
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEE
Confidence            344466666665 44466656688888765321  1111   123568888776666544 4444 55888998776543


Q ss_pred             EEEec------CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          99 QKLEF------GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        99 ~~~~~------~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      .....      ...+.++..+++|.+.+++.++.|..||.+
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~  523 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD  523 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred             ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence            33221      246788889999988877764446667653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.15  E-value=0.02  Score=36.81  Aligned_cols=131  Identities=12%  Similarity=0.057  Sum_probs=75.9

Q ss_pred             eeEeecCCCceeeEE-e-eCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCC-C--CeEEeCC-------------
Q psy6446           2 GTVWDAVSGEELHSF-Q-HPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDA-E--PTVYRGH-------------   62 (134)
Q Consensus         2 i~v~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~-~--~~~~~~~-------------   62 (134)
                      |+.+|..++.....+ . ........++|+|+++.|+ +-...+.|+.++++.... .  ...+.+.             
T Consensus       252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            556666656552222 2 2222222399999998554 445668899988653211 1  1122221             


Q ss_pred             --CCCEeEEEE---------eeCCCEEEEeeCCCcEEEEecCCCceeEEEecC------------------CCCeEEEEc
Q psy6446          63 --SSGIKHVQF---------FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG------------------AVPNSLEIS  113 (134)
Q Consensus        63 --~~~v~~~~~---------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~v~~~~~~  113 (134)
                        -.....+++         .+++..+++-..++.|+.++. ++.........                  .....++++
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence              123667888         556666666666778999884 45332222110                  125689999


Q ss_pred             -cCCcEEEEe-cCCeEEEEeCC
Q psy6446         114 -RDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       114 -~~~~~l~~~-~~~~i~i~d~~  133 (134)
                       +++.++++- .++.|+.++++
T Consensus       411 ~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          411 MKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEecC
Confidence             566666664 56899988875

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.15  E-value=0.039  Score=40.03  Aligned_cols=128  Identities=7%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             eeEeecCCCceeeEEeeCC-CceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC------
Q psy6446           2 GTVWDAVSGEELHSFQHPH-IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN------   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~------   74 (134)
                      |++.+...+..+.....+. ..+.+.+.+  +.+++.++ .+.+.++.++.+.........-...|.++++.|.      
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~  570 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL  570 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence            5566655444555554322 223324443  34565554 5677777776532111111233568999999763      


Q ss_pred             CCEEEEeeC-CCcEEEEecCCCceeEEEecC--CCCeEEEEcc--CCcEEEEe-cCCeEEEEeC
Q psy6446          75 NTRLISCAE-DKTVRLWDVSASAEVQKLEFG--AVPNSLEISR--DGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        75 ~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~-~~~~i~i~d~  132 (134)
                      +++++.|.. |++++++++.+.+.+......  ..+.++.+..  ...++.++ .||.+..+.+
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            368888886 999999999877666554432  2445554432  23466666 6787765543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.13  E-value=0.016  Score=35.21  Aligned_cols=127  Identities=13%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC--CeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND--KNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l   78 (134)
                      |..+|.. ++....+..... ...+++.++++++++....  ..+..++..++.. ..... ........++..+++..+
T Consensus        55 I~~~d~~-g~~~~~~~~~~~-p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~g~~~~~~~~~~  131 (306)
T 2p4o_A           55 IVSITPD-GNQQIHATVEGK-VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLPDAIFLNGITPLSDTQYL  131 (306)
T ss_dssp             EEEECTT-CCEEEEEECSSE-EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECTTCSCEEEEEESSSSEEE
T ss_pred             EEEECCC-CceEEEEeCCCC-ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCCCccccCcccccCCCcEE
Confidence            4455544 333333333333 3448999999866554332  2466677665442 11111 112223445544444444


Q ss_pred             EEeeCCCcEEEEecCCCce-eEEEe--------cC--CCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          79 ISCAEDKTVRLWDVSASAE-VQKLE--------FG--AVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        79 ~~~~~d~~i~~~d~~~~~~-~~~~~--------~~--~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++-..++.|..+|...++. +....        ..  .....+  +|++..+..+  ..+.|..||+.
T Consensus       132 v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          132 TADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             EEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            4444578888888765431 11111        01  123445  7888766654  45899999874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.88  E-value=0.0047  Score=36.17  Aligned_cols=99  Identities=10%  Similarity=-0.007  Sum_probs=61.7

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC--------EeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG--------IKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      +..++|+|+|.+.++  .+|.++-.+..+.....  ..+....        ...+.|.|++...++  .||.|.-++-.+
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~--W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN--WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC--HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCccc--ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            345999999986666  67777766654422211  1111112        377888889887776  568888777543


Q ss_pred             Ccee------EEEec--CCCCeEEEEccCCcEEEEecCCeEE
Q psy6446          95 SAEV------QKLEF--GAVPNSLEISRDGTTITVTHGSCVT  128 (134)
Q Consensus        95 ~~~~------~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~  128 (134)
                      ....      ..+..  =..+..+.+.|+|.+.++. ++.+.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            2111      11111  1356889999999998888 88754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.88  E-value=0.033  Score=34.77  Aligned_cols=103  Identities=13%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC-CCe----EEeCCCCCEeEEEEeeC---CCEEEEee-C------
Q psy6446          19 PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA-EPT----VYRGHSSGIKHVQFFKN---NTRLISCA-E------   83 (134)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~-~------   83 (134)
                      -..... ++|.|+|+.++++...|.|++++...... ...    ...........++++|+   +..|.... .      
T Consensus        17 l~~P~~-i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWA-LAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEE-EEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEE-EEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            344455 99999998344555679999998543211 111    11122346789999995   45554332 2      


Q ss_pred             -CCcEEEEecCCC--c--eeEEE-e-cC------CCCeEEEEccCCcEEEEe
Q psy6446          84 -DKTVRLWDVSAS--A--EVQKL-E-FG------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        84 -d~~i~~~d~~~~--~--~~~~~-~-~~------~~v~~~~~~~~~~~l~~~  122 (134)
                       ...|..++....  +  ....+ . ..      .....+.|.|||.+.++.
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence             234666666432  1  11111 1 11      124689999999766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.76  E-value=0.042  Score=34.34  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=57.8

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeE---EeCCCCCEeEEEEeeC---CCEEEEeeC----C----C
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV---YRGHSSGIKHVQFFKN---NTRLISCAE----D----K   85 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~l~~~~~----d----~   85 (134)
                      ..... ++|.|+|+++++ ..+|.|++++. .+......   ..........++++|+   +..|+.+..    +    +
T Consensus        29 ~~P~~-ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWS-IAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEE-EEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeE-EEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34444 999999975554 55699998873 22211100   0112356889999997   555544332    3    5


Q ss_pred             cEEEEecCCC--c---e--e-EEEec--CCCCeEEEEccCCcEEEEe
Q psy6446          86 TVRLWDVSAS--A---E--V-QKLEF--GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        86 ~i~~~d~~~~--~---~--~-~~~~~--~~~v~~~~~~~~~~~l~~~  122 (134)
                      .|..++....  .   .  + ..+..  ......+.|.|+|.++++.
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            6777776543  1   1  1 11221  1235789999999866653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.75  E-value=0.04  Score=33.93  Aligned_cols=106  Identities=7%  Similarity=-0.024  Sum_probs=62.8

Q ss_pred             eEEEccCCcEEEEec--CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe-eCCCcEEEEecCCCceeEEE
Q psy6446          25 SVHFATDSYRLATGS--NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC-AEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~  101 (134)
                      .++++|.+..|+.+.  ..+.|...+++... ........-.....++++|++..|+.+ ...+.|..+|+.........
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence            388888655555544  35788888876432 212222233467899999977666544 45678999998643332222


Q ss_pred             e-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446         102 E-FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       102 ~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      . .......+++..+ ..+.+. ..+.|..+|.
T Consensus       205 ~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          205 KGSLPHPFALTLFED-ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             CSCCSCEEEEEEETT-EEEEEETTTTEEEEEET
T ss_pred             cCCCCCceEEEEeCC-EEEEEecCCCeEEEEEC
Confidence            2 2234567777543 333333 4578887775

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.72  E-value=0.079  Score=36.94  Aligned_cols=107  Identities=9%  Similarity=0.015  Sum_probs=68.5

Q ss_pred             EEEccCCcE-EEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-C-CCcEEEEecCCCceeEEEe
Q psy6446          26 VHFATDSYR-LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-E-DKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        26 ~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~  102 (134)
                      +++.+.++. .++-...+.|.+.+++... ..............+++.|....|+... . .+.|...++..........
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            888876644 4555667899999987533 2223333445689999999765555443 3 3678888876544433333


Q ss_pred             cC-CCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         103 FG-AVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       103 ~~-~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      .. .....|++++.+..|..+  ..+.|..+|+.
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            22 457899999876655544  34788888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.71  E-value=0.047  Score=34.26  Aligned_cols=106  Identities=9%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             EEEcc--CCc-EEEEe-cC--CCeEEEEECCCCCCCCeE---EeCC-CCCEeEEEEeeCCCEEEEeeC------------
Q psy6446          26 VHFAT--DSY-RLATG-SN--DKNIRIYDLNKPDAEPTV---YRGH-SSGIKHVQFFKNNTRLISCAE------------   83 (134)
Q Consensus        26 ~~~~~--~~~-~l~~~-~~--d~~v~i~~~~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~------------   83 (134)
                      +.+.+  ++. +|+++ ..  +..+.+|++.........   +.+. -...+.+.+.++|.+.++...            
T Consensus       117 i~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~  196 (355)
T 3sre_A          117 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM  196 (355)
T ss_dssp             EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH
T ss_pred             eEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh
Confidence            55544  343 34333 33  467788777654322221   2221 245789999999987776431            


Q ss_pred             -----CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          84 -----DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        84 -----d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                           .+.+.-+|.  ++.......-...+.++|+||++.+..+  ..+.|..|++.
T Consensus       197 ~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          197 HLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             hccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence                 234444544  3332222233456899999999877765  45899999874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.63  E-value=0.053  Score=33.74  Aligned_cols=109  Identities=10%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             eeeEEEccCCcEEEEec-CCCeEEEEECCCCCCCCeEEeC----C--CCCEeEEEE---eeCCCEEEEee----------
Q psy6446          23 KSSVHFATDSYRLATGS-NDKNIRIYDLNKPDAEPTVYRG----H--SSGIKHVQF---FKNNTRLISCA----------   82 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~----------   82 (134)
                      -.+++|++....|..++ ..+.|..|+...+......+..    .  ...+..+.+   .|+++.+++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34599988555555555 7899999998743321111111    0  113578999   57877766443          


Q ss_pred             ---CCCcEEEEecC---CCceeEEEecC--------------CCCeEEEEccCCcEEEE-ecC-CeEEEEe
Q psy6446          83 ---EDKTVRLWDVS---ASAEVQKLEFG--------------AVPNSLEISRDGTTITV-THG-SCVTFLD  131 (134)
Q Consensus        83 ---~d~~i~~~d~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~-~~~-~~i~i~d  131 (134)
                         .+..+..+|+.   +++........              .....++.+++|+..++ +.. +.|...+
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence               25779999999   78777666521              13678999999986664 344 5555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.61  E-value=0.071  Score=35.06  Aligned_cols=108  Identities=16%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             eEEEcc-CCcEEEEecC-CCeEEEEECCCCCCCCeEEeCC---CCCEeEEEE-------eeCCCEEEEeeCCC-------
Q psy6446          25 SVHFAT-DSYRLATGSN-DKNIRIYDLNKPDAEPTVYRGH---SSGIKHVQF-------FKNNTRLISCAEDK-------   85 (134)
Q Consensus        25 ~~~~~~-~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-------   85 (134)
                      .++|+| +...|+++.. .+.|++.|+..+. .......-   -.....++|       +++++.|+.....+       
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~  221 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP  221 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence            488998 3555555443 4678888887643 22222211   124889999       99999766655443       


Q ss_pred             cEEEEecCC-Ccee-----EEEecCCCCeEEEEccCCcE-EEEe-cCCeEEEEeCC
Q psy6446          86 TVRLWDVSA-SAEV-----QKLEFGAVPNSLEISRDGTT-ITVT-HGSCVTFLDAN  133 (134)
Q Consensus        86 ~i~~~d~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~-l~~~-~~~~i~i~d~~  133 (134)
                      .+.+++... +...     ..+........++++|++.. +++. .++.|..+|++
T Consensus       222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             eEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            255665333 1221     22322234568899995544 4444 56889999864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.50  E-value=0.022  Score=33.47  Aligned_cols=66  Identities=11%  Similarity=-0.012  Sum_probs=43.3

Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCce------eEEEecC--CCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAE------VQKLEFG--AVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ..+..++|+|++...+.  .++.+.-.+..+...      ...+...  ..-..+.|+|+|.+.++ .||.|.-++.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCC
Confidence            46789999998885554  677766666544211      1222110  11478999999998888 6798887764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.42  E-value=0.11  Score=35.12  Aligned_cols=129  Identities=9%  Similarity=-0.080  Sum_probs=76.5

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |+..|+.+......+.  +-..... ++|++.+..|+ +-..++.|..++++... .......-......+++.+.+..|
T Consensus        17 I~~i~l~~~~~~~~~~~~~~~~~~~-l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           17 IRRISLETNNNNVAIPLTGVKEASA-LDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             EEEEESSCTTCEEECCCCSCSCEEE-EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTEE
T ss_pred             EEEEECCCCCcceEEEcCCCCceEE-EEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceEEEEeCCCEE
Confidence            5566666544333332  2234444 99998655554 55567889999887533 222232222457889998765555


Q ss_pred             -EEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe--c-CCeEEEEeC
Q psy6446          79 -ISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT--H-GSCVTFLDA  132 (134)
Q Consensus        79 -~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~-~~~i~i~d~  132 (134)
                       ++-...+.|.+.++.......... .-.....++++|....|..+  . .+.|...++
T Consensus        95 Y~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             EEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence             455556789999986544333222 23456899999865444443  2 467776665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.40  E-value=0.13  Score=35.53  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=64.0

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-----CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-----SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      .+.++...+++.. ..|+. +-+..++..++... ......     ...|.++...++++..+ ++.++-+..+|..+++
T Consensus       451 ~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          451 DVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CEEEEEECTTSEE-EEEET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             eEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            3444777777654 44444 45888888764322 221111     35688888877777554 4443347778876554


Q ss_pred             eeEEEec-----CCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          97 EVQKLEF-----GAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        97 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      . ..+..     ...|.++..+++|.+.+++.+|-+..||.+
T Consensus       527 ~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~  567 (781)
T 3v9f_A          527 V-RKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSAR  567 (781)
T ss_dssp             E-EEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTT
T ss_pred             E-EEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCC
Confidence            3 33321     245788888888887777665544777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.32  E-value=0.11  Score=33.89  Aligned_cols=92  Identities=10%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC----CCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS----SGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~   76 (134)
                      ++.|+|+++.+.++.+.-.+.++. ..|-.+. .|+..+ +..|+.|++.....+...+.-|.    ..|-.-..+++.+
T Consensus        87 ~lQiFnle~K~klks~~~~e~Vvf-WkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~k  163 (494)
T 1bpo_A           87 TLQIFNIEMKSKMKAHTMTDDVTF-WKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK  163 (494)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCE-EEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSS
T ss_pred             eEEEEchHHhhhhcceecCCCceE-EEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCC
Confidence            478999999999999987777777 7776544 444443 35799999976556666666553    4566677788889


Q ss_pred             EEEEee---C----CCcEEEEecCCC
Q psy6446          77 RLISCA---E----DKTVRLWDVSAS   95 (134)
Q Consensus        77 ~l~~~~---~----d~~i~~~d~~~~   95 (134)
                      +++..+   .    .|.+.+|....+
T Consensus       164 W~~l~GI~~~~~~v~G~mQLYS~er~  189 (494)
T 1bpo_A          164 WLLLTGISAQQNRVVGAMQLYSVDRK  189 (494)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             eEEEEeecccCCcccceEEEeecccc
Confidence            887433   2    256777776544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.06  E-value=0.19  Score=34.13  Aligned_cols=107  Identities=7%  Similarity=-0.037  Sum_probs=68.1

Q ss_pred             EEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee--CCCcEEEEecCCCceeEEEe
Q psy6446          26 VHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA--EDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        26 ~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~  102 (134)
                      +++.+.+. ...+-...+.|.+.+++.... .......-.....+++.|....|+-..  ..+.|...++..........
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence            78876544 445555678899999875432 222324445678999998655555443  35678888776544333333


Q ss_pred             cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         103 FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       103 ~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      .-.....+++++++..|..+  ..+.|..+|+.
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            34556899999987665544  45788888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.75  E-value=0.17  Score=31.15  Aligned_cols=103  Identities=7%  Similarity=0.044  Sum_probs=57.8

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEec--CCCceeEEEe
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDV--SASAEVQKLE  102 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~  102 (134)
                      .+.+.+++..++.+. ++.+.. ..+.+..-..........+..+.+.+++..++.+...+..+-.|-  .+.+... ..
T Consensus       126 ~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~  202 (327)
T 2xbg_A          126 LIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RT  202 (327)
T ss_dssp             EEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CC
T ss_pred             EEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CC
Confidence            366666666666554 454432 122222222223344567889999988877765544333333332  2222221 12


Q ss_pred             cCCCCeEEEEccCCcEEEEecCCeEEEE
Q psy6446         103 FGAVPNSLEISRDGTTITVTHGSCVTFL  130 (134)
Q Consensus       103 ~~~~v~~~~~~~~~~~l~~~~~~~i~i~  130 (134)
                      ....+..+.+.+++..++++.+|.+.+.
T Consensus       203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s  230 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLWMIVNGGKIAFS  230 (327)
T ss_dssp             SSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CCCccceeEECCCCCEEEEeCCceEEEe
Confidence            3456678888999888877777777665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.71  E-value=0.16  Score=30.66  Aligned_cols=128  Identities=9%  Similarity=-0.022  Sum_probs=63.0

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCC----CeEEEEECCCCCCCCeEEeCCC-CCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSND----KNIRIYDLNKPDAEPTVYRGHS-SGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~   74 (134)
                      +.+||..+++-...-.  ....... +. ..++..++.|+.+    ..+.+||..+..-  ..+.... .........-+
T Consensus        26 ~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~  101 (306)
T 3ii7_A           26 CRYFNPKDYSWTDIRCPFEKRRDAA-CV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSW--YSKLGPPTPRDSLAACAAE  101 (306)
T ss_dssp             EEEEETTTTEEEECCCCSCCCBSCE-EE-EETTEEEEECCBSSSBCCEEEEEETTTTEE--EEEECCSSCCBSCEEEEET
T ss_pred             EEEecCCCCCEecCCCCCcccceeE-EE-EECCEEEEEeCCCCCCcceEEEEeCCCCeE--EECCCCCccccceeEEEEC
Confidence            5678887765432211  1111222 22 2366677777654    5688888876431  1111111 11111112236


Q ss_pred             CCEEEEeeCC------CcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEec----------CCeEEEEeCCC
Q psy6446          75 NTRLISCAED------KTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVTH----------GSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~----------~~~i~i~d~~t  134 (134)
                      ++.++.|+.+      ..+.+||..+.+....-...  ..-.++.. -+++.++.++          -..+.+||+++
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            6666777654      45889998876543322211  11122332 2556555542          24588888753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.60  E-value=0.22  Score=31.36  Aligned_cols=95  Identities=8%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             eeEEEccCCcEEEEec-----------------CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee-CCC
Q psy6446          24 SSVHFATDSYRLATGS-----------------NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA-EDK   85 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~-----------------~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~   85 (134)
                      +-+.+.++|.+.++..                 ..|.+..++.  + .. ......-...+.++|+||++.++.+. ..+
T Consensus       168 ND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~  243 (355)
T 3sre_A          168 NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-DV-RVVAEGFDFANGINISPDGKYVYIAELLAH  243 (355)
T ss_dssp             EEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             ceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-eE-EEeecCCcccCcceECCCCCEEEEEeCCCC
Confidence            4488888888766643                 1245555554  2 22 22222335679999999998876554 567


Q ss_pred             cEEEEecCC-Cce--eEEEecCCCCeEEEEcc-CCcEEEEe
Q psy6446          86 TVRLWDVSA-SAE--VQKLEFGAVPNSLEISR-DGTTITVT  122 (134)
Q Consensus        86 ~i~~~d~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~  122 (134)
                      .|..|++.. ++.  ...+......-.+++++ +|.+.+++
T Consensus       244 ~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence            899999863 322  22333355567889998 58877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.53  E-value=0.23  Score=31.15  Aligned_cols=103  Identities=9%  Similarity=-0.005  Sum_probs=60.3

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-----EEeCCCCCEeEEEEeeC---CCEEEEe---eCCCc
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-----VYRGHSSGIKHVQFFKN---NTRLISC---AEDKT   86 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~---~~~l~~~---~~d~~   86 (134)
                      +-..... ++|.|+|..+++-...|.|++++...+.....     ......+....++++|+   +..|...   ..++.
T Consensus        30 gL~~P~~-ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWG-LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceE-EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3344444 99999998777766589999987654332110     11123456899999985   3444432   23455


Q ss_pred             EEEEecCCC----------ceeE-EEec--CCCCeEEEEccCCcEEEE
Q psy6446          87 VRLWDVSAS----------AEVQ-KLEF--GAVPNSLEISRDGTTITV  121 (134)
Q Consensus        87 i~~~d~~~~----------~~~~-~~~~--~~~v~~~~~~~~~~~l~~  121 (134)
                      |.-+....+          +.+. .+..  ......+.|.|||.+.++
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt  156 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG  156 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence            666655441          1111 1211  123467999999986665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.17  E-value=0.26  Score=29.69  Aligned_cols=128  Identities=16%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCC-------CeEEEEECCCCCCCCeEEeCCCCC-EeEEEE
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSND-------KNIRIYDLNKPDAEPTVYRGHSSG-IKHVQF   71 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~~~~-v~~~~~   71 (134)
                      +.+||+.+.+-...-.  ....... +.. .+++.++.|+.+       ..+.+||+.+..-  ........+ ......
T Consensus       126 ~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~  201 (302)
T 2xn4_A          126 VEAYNIKSNEWFHVAPMNTRRSSVG-VGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW--TYIAEMSTRRSGAGVG  201 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE--EEECCCSSCCBSCEEE
T ss_pred             EEEEeCCCCeEeecCCCCCcccCce-EEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE--EECCCCccccccccEE
Confidence            4577777655433211  1111122 222 256666776542       3578888876421  111111111 111111


Q ss_pred             eeCCCEEEEeeCC-----CcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          72 FKNNTRLISCAED-----KTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        72 ~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      ..+++.++.|+.+     ..+.+||+.+.+....-...  ..-.++.. .+++.++.| .+     ..+.+||+++
T Consensus       202 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          202 VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence            2266666777654     36889998876544322211  11122322 255665554 22     3689998764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.11  Score=32.52  Aligned_cols=101  Identities=9%  Similarity=0.035  Sum_probs=60.1

Q ss_pred             eeEeecCCCceeeEEeeC--CCceeeEEE--cc-CCcEEEEe-cCCCeEEEEECCCCCCCCeEEeC----CCCCEeE-E-
Q psy6446           2 GTVWDAVSGEELHSFQHP--HIVKSSVHF--AT-DSYRLATG-SNDKNIRIYDLNKPDAEPTVYRG----HSSGIKH-V-   69 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~--~~~~~~~~~--~~-~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~----~~~~v~~-~-   69 (134)
                      |.-.|..+|+.+..++..  ...+. ..-  .+ ++..++.. +.||.+..++..++.... .+..    ...++.. . 
T Consensus        22 l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv~~SP~~~~~~   99 (339)
T 2be1_A           22 LHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLVSTSPLHLKTN   99 (339)
T ss_dssp             EEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccceeccccccCCC
Confidence            567788899999998854  22222 110  01 22333343 689999999987653211 1110    1111111 0 


Q ss_pred             -EE-----eeCCCEEEEeeCCCcEEEEecCCCceeEEEecC
Q psy6446          70 -QF-----FKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG  104 (134)
Q Consensus        70 -~~-----~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  104 (134)
                       ..     .-.+..+++++.++.+...|..+|+.+..+...
T Consensus       100 pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A          100 IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             ----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence             00     004567889999999999999999999988754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.96  E-value=0.45  Score=34.03  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .+.++...++..++++.+.|+.+++|++.+++++....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777788899999999999999999999888765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.94  E-value=0.31  Score=29.32  Aligned_cols=130  Identities=9%  Similarity=0.010  Sum_probs=63.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCCCeEEeCCCCC-EeEEEEeeCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAEPTVYRGHSSG-IKHVQFFKNN   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~   75 (134)
                      +.+||+.+.+-...-..+...........+++.++.|+.+     ..+.+||+.+..-  ........+ ........++
T Consensus       130 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~~  207 (301)
T 2vpj_A          130 MERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW--TNVTPMATKRSGAGVALLND  207 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETT
T ss_pred             EEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE--EeCCCCCcccccceEEEECC
Confidence            5678877665433222111111112222367777777654     4588888876421  111111111 1111122256


Q ss_pred             CEEEEeeCC-----CcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          76 TRLISCAED-----KTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        76 ~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      +.++.|+.+     ..+.+||+.+.+....-..  ...-.++.. -+++.++.+ .+     ..+.+||+++
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            666676654     4689999987654433221  111122222 256665554 22     4688888763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.85  E-value=0.31  Score=36.63  Aligned_cols=92  Identities=9%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC----CCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH----SSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~   76 (134)
                      ++.|+|+.+.+.++.+.-...++. ..|-.+. .|+..+ +..|+.|++.....+...+.-|    ...|-.-..+++.+
T Consensus        87 ~lQiFnl~~k~klks~~~~e~Vvf-WkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~k  163 (1630)
T 1xi4_A           87 TLQIFNIEMKSKMKAHTMTDDVTF-WKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK  163 (1630)
T ss_pred             eEEEeehHHhhhhcccccCCCceE-EEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCC
Confidence            467888888888888877777776 7776443 344433 3579999997644454444444    35677777788889


Q ss_pred             EEEEee-------CCCcEEEEecCCC
Q psy6446          77 RLISCA-------EDKTVRLWDVSAS   95 (134)
Q Consensus        77 ~l~~~~-------~d~~i~~~d~~~~   95 (134)
                      +++..|       -.|.+.+|....+
T Consensus       164 W~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          164 WLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             eEEEEeeccCCCcccceeeeeecccc
Confidence            887433       2366777766543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.85  E-value=0.35  Score=29.41  Aligned_cols=96  Identities=9%  Similarity=0.077  Sum_probs=46.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC-C-----CeEEEEECCCCCCCCeEEeCCC-CCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN-D-----KNIRIYDLNKPDAEPTVYRGHS-SGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----~~v~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~   74 (134)
                      +.+||..+.+-...-..+...........+++.++.|+. +     ..+.+||..+..-  ....... ......+..-+
T Consensus       119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~~  196 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW--KELAPMQTARSLFGATVHD  196 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEET
T ss_pred             EEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE--EECCCCCCchhceEEEEEC
Confidence            567787765432211111111111222246667777765 2     3688888876421  1111000 11111122226


Q ss_pred             CCEEEEeeCCC-----cEEEEecCCCceeE
Q psy6446          75 NTRLISCAEDK-----TVRLWDVSASAEVQ   99 (134)
Q Consensus        75 ~~~l~~~~~d~-----~i~~~d~~~~~~~~   99 (134)
                      ++.++.|+.++     .+.+||+.+.+-..
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            66667776543     47888887765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.84  E-value=0.34  Score=29.34  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCCC-eEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~   73 (134)
                      +.+||..+.+-...-.  .......++.+  ++..++.|+.+     ..+.+||+.+..-.. ............+.  -
T Consensus       139 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~  214 (308)
T 1zgk_A          139 VERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--L  214 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E
T ss_pred             EEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--E
Confidence            5677777654332211  11112221222  56777777654     458888887642100 00011111111222  2


Q ss_pred             CCCEEEEeeCC-----CcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEec------CCeEEEEeCCC
Q psy6446          74 NNTRLISCAED-----KTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVTH------GSCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------~~~i~i~d~~t  134 (134)
                      +++.++.|+.+     ..+.+||+.+.+-...-..  ...-.++... ++++++.|+      -..+.+||+++
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCC
Confidence            66666676654     4689999887654332111  1112233332 556655542      25788998764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.015  Score=36.21  Aligned_cols=69  Identities=7%  Similarity=-0.018  Sum_probs=37.3

Q ss_pred             cEEEEecCCCeEEEEECCCCCCCCeEEeCC-CCCEeEEEE--eeCCCEEEEe--eCCCcEEEEecCCCceeEEEe
Q psy6446          33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGH-SSGIKHVQF--FKNNTRLISC--AEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        33 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      ..+++++.||.+.-.|..+++.... +... ..++....-  .+.+..++.+  ..||.+..++..+|.....+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~-~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~   84 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWS-IEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS   84 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEE-ECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEE-ecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence            4677777888888888776553322 2111 011111100  0112233333  689999999988886655444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.72  E-value=0.5  Score=30.71  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=57.8

Q ss_pred             CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEe------CCCCCEeEEEEeeC---CCEEEEeeC-----
Q psy6446          19 PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYR------GHSSGIKHVQFFKN---NTRLISCAE-----   83 (134)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~------~~~~~v~~~~~~~~---~~~l~~~~~-----   83 (134)
                      -..... ++|.|+|+++++-...+.|++++...+.... ..+.      ...+....++|+|+   +..|.....     
T Consensus        26 l~~P~~-~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHA-LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceE-EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            334444 9999999877776554578888765433111 0111      12456779999995   555544332     


Q ss_pred             --------CCcEEEEecCCC--c-----eeE-EEec--CCCCeEEEEccCCcEEEEe
Q psy6446          84 --------DKTVRLWDVSAS--A-----EVQ-KLEF--GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        84 --------d~~i~~~d~~~~--~-----~~~-~~~~--~~~v~~~~~~~~~~~l~~~  122 (134)
                              ...|.-++....  +     .+. .+..  ......+.|.|||.+.++.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence                    234555655332  1     111 1111  1335789999999876653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.25  E-value=1.1  Score=32.83  Aligned_cols=126  Identities=13%  Similarity=0.085  Sum_probs=67.1

Q ss_pred             eeEeecCCCceee--EEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELH--SFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |.+|++..++...  ..+..+.+..-..|  +| +|++|- .+.+++|++...+........+ ..+..+.....+++++
T Consensus       866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~  940 (1158)
T 3ei3_A          866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFIL  940 (1158)
T ss_dssp             EEEEEEETTEEEEEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEE
T ss_pred             EEEEEEECCEEEEEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEE
Confidence            5566665443322  22234444442334  45 444443 3689999997644322111112 1233333334578888


Q ss_pred             EeeCCCcEEEEecC--CCceeEEEe--cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          80 SCAEDKTVRLWDVS--ASAEVQKLE--FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        80 ~~~~d~~i~~~d~~--~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      .|.....+.+...+  .++....-.  ....+.++.+-.++.++.+-.+|+|.++..
T Consensus       941 vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          941 VGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEE
T ss_pred             EEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEec
Confidence            88887777766544  222222222  244567788766655555556788888754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.08  E-value=0.54  Score=28.38  Aligned_cols=130  Identities=11%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC------CeEEEEECCCCCCCCeEEeCCC-CCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND------KNIRIYDLNKPDAEPTVYRGHS-SGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~   74 (134)
                      +.+||..+.+-...-..+...........+++.++.|+.+      ..+.+||..+..-  ....... ..........+
T Consensus        72 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~  149 (306)
T 3ii7_A           72 MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW--HTKPSMLTQRCSHGMVEAN  149 (306)
T ss_dssp             EEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEET
T ss_pred             EEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce--EeCCCCcCCcceeEEEEEC
Confidence            4678877765433222111111112222366777777654      4588888876431  1111111 11111111225


Q ss_pred             CCEEEEeeC---------CCcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEec-C-----CeEEEEeCCC
Q psy6446          75 NTRLISCAE---------DKTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVTH-G-----SCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~-----~~i~i~d~~t  134 (134)
                      ++.++.|+.         -..+.+||+.+.+....-...  ..-.++... +++.++.|+ +     ..+.+||+++
T Consensus       150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence            666666553         345889998876543322211  111233333 555555542 1     4688888753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.06  E-value=0.57  Score=28.68  Aligned_cols=88  Identities=6%  Similarity=-0.006  Sum_probs=50.8

Q ss_pred             EEEccCCcEEEEec----CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC-CCcEEEEecCCCceeEE
Q psy6446          26 VHFATDSYRLATGS----NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE-DKTVRLWDVSASAEVQK  100 (134)
Q Consensus        26 ~~~~~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~  100 (134)
                      ..|+++++.|+-..    .+..|+..+++...  ...+..+..    .+++++++.|.-.+. ...|...++..+.....
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF  182 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence            46778888887664    33456666665432  233444432    456778888774443 56788888766554433


Q ss_pred             EecCCCCeEEEEccCCcEEEEe
Q psy6446         101 LEFGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus       101 ~~~~~~v~~~~~~~~~~~l~~~  122 (134)
                      +.  ... ...++|++.+|+-.
T Consensus       183 ~~--~~~-~~~~~P~g~~iy~t  201 (302)
T 3s25_A          183 YD--CNC-YKPVVLDDTNVYYM  201 (302)
T ss_dssp             EC--SCE-EEEEEEETTEEEEE
T ss_pred             eC--CCc-cceeeecCCEEEEE
Confidence            22  222 23356888777643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.98  E-value=0.98  Score=31.09  Aligned_cols=131  Identities=10%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             eeEeecCCCceeeEE-e------eCCCceeeEEEcc-CCcEEEEecCC------CeEEEEECCCCCCCCeEEeCCC-CCE
Q psy6446           2 GTVWDAVSGEELHSF-Q------HPHIVKSSVHFAT-DSYRLATGSND------KNIRIYDLNKPDAEPTVYRGHS-SGI   66 (134)
Q Consensus         2 i~v~d~~~~~~~~~~-~------~~~~~~~~~~~~~-~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~-~~v   66 (134)
                      +.+||..+++-...- .      .......++...+ ++..++.|+.+      ..+.+||..+..-  ....... ...
T Consensus       414 v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W--~~~~~~p~~R~  491 (695)
T 2zwa_A          414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW--SMIKSLSHTRF  491 (695)
T ss_dssp             EEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEE--EECCCCSBCCB
T ss_pred             EEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcE--EECCCCCCCcc
Confidence            567888776543322 1      1111222233333 67777777643      3577888776321  0110000 111


Q ss_pred             -eEEEEeeCCCEEEEeeCCC--cEEEEecCCCceeEEEe-----cC-CCCeEEEEccC-CcEEEEe-c--C-----CeEE
Q psy6446          67 -KHVQFFKNNTRLISCAEDK--TVRLWDVSASAEVQKLE-----FG-AVPNSLEISRD-GTTITVT-H--G-----SCVT  128 (134)
Q Consensus        67 -~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~-----~~-~~v~~~~~~~~-~~~l~~~-~--~-----~~i~  128 (134)
                       .++....+++.++.|+.++  .+.+||..+.+....-.     .. .....+.+..+ +..++.| .  +     +.+.
T Consensus       492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~  571 (695)
T 2zwa_A          492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI  571 (695)
T ss_dssp             SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred             cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence             1222223777777777654  68999988765433221     11 11233555555 5555554 2  2     4688


Q ss_pred             EEeCCC
Q psy6446         129 FLDANS  134 (134)
Q Consensus       129 i~d~~t  134 (134)
                      +||+.+
T Consensus       572 ~yd~~~  577 (695)
T 2zwa_A          572 IFKYDA  577 (695)
T ss_dssp             EEEECT
T ss_pred             EEEccC
Confidence            888753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.96  E-value=0.81  Score=30.05  Aligned_cols=88  Identities=10%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEE
Q psy6446          40 NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI  119 (134)
Q Consensus        40 ~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l  119 (134)
                      .+..+.+.|+..+..+.+..-    ..-+.-.+|..+.++.-. ...+.+||+.+.+.+........|.--+|-.+ +.|
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l  119 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTV  119 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEE
T ss_pred             CCCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeE
Confidence            345899999988665432211    123344677777776554 67899999999999998888888888888755 455


Q ss_pred             EEecCCeEEEEeCC
Q psy6446         120 TVTHGSCVTFLDAN  133 (134)
Q Consensus       120 ~~~~~~~i~i~d~~  133 (134)
                      +.-.+..|+.|+++
T Consensus       120 ~lVT~taVyHWsi~  133 (494)
T 1bpo_A          120 ALVTDNAVYHWSME  133 (494)
T ss_dssp             EEECSSEEEEEESS
T ss_pred             EEEcCCeeEEeccc
Confidence            55567888999874

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.94  E-value=0.81  Score=29.93  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             eCCCceeeEEEccCCc-EEEEecCCCeEEEEECCCCC--CCCeE----E-eC----CCCCEeEEEEeeC---CCEE-EEe
Q psy6446          18 HPHIVKSSVHFATDSY-RLATGSNDKNIRIYDLNKPD--AEPTV----Y-RG----HSSGIKHVQFFKN---NTRL-ISC   81 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~--~~~~~----~-~~----~~~~v~~~~~~~~---~~~l-~~~   81 (134)
                      .-..... ++|.|++. .++++...|.|++++.....  .....    + .+    .......++|+|+   ..+| ++-
T Consensus        12 gL~~P~~-~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           12 GLRQPVG-ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             EESSEEE-EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCCCceE-EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            3344555 99999986 56666778999999754321  11111    1 11    1456889999986   2333 332


Q ss_pred             eC--C----------CcEEEEecCC----------CceeEEEec---CCCCeEEEEccCCcEEEEec
Q psy6446          82 AE--D----------KTVRLWDVSA----------SAEVQKLEF---GAVPNSLEISRDGTTITVTH  123 (134)
Q Consensus        82 ~~--d----------~~i~~~d~~~----------~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~  123 (134)
                      +.  +          ..|.-|.+..          .+.+..+..   ......+.|.|||.+.++..
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence            21  1          1344455432          122233321   22357899999997666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.76  E-value=0.68  Score=28.48  Aligned_cols=104  Identities=10%  Similarity=0.010  Sum_probs=59.3

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      +..+.+.+++..++.+...+..+-.|-. +..-..........+..+.+.++++.+ .++.+|.+.+.+...++.-..+.
T Consensus       165 ~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          165 MRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL  242 (327)
T ss_dssp             EEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB
T ss_pred             eEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc
Confidence            4448888888877776544333333321 121111223345678888888887655 55567777766422232222221


Q ss_pred             c-----CCCCeEEEEccCCcEEEEecCCeEE
Q psy6446         103 F-----GAVPNSLEISRDGTTITVTHGSCVT  128 (134)
Q Consensus       103 ~-----~~~v~~~~~~~~~~~l~~~~~~~i~  128 (134)
                      .     ...+..+.+.+++..++++.++.|.
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~  273 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLAGGAGALL  273 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred             CCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence            1     1246788888888888887777663

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.72  E-value=0.63  Score=27.97  Aligned_cols=131  Identities=9%  Similarity=-0.030  Sum_probs=63.3

Q ss_pred             eeEeecCCCceeeEEeeCC-CceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCC-CeEEeCCC-CCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHPH-IVKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAE-PTVYRGHS-SGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~-~~~~~~~~-~~v~~~~~~~   73 (134)
                      +.+||..+.+-...-..+. .... .....++..++.|+.+     ..+.+||+.+.... ......-. ..........
T Consensus        33 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~  111 (301)
T 2vpj_A           33 VEKYDPKTQEWSFLPSITRKRRYV-ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL  111 (301)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE
T ss_pred             EEEEcCCCCeEEeCCCCChhhccc-cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE
Confidence            5678877665332111111 1112 2222356777777754     36889998775410 11111111 1111111222


Q ss_pred             CCCEEEEeeCC-----CcEEEEecCCCceeEEEecC--CCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          74 NNTRLISCAED-----KTVRLWDVSASAEVQKLEFG--AVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      +++.++.|+.+     ..+.+||+.+.+....-...  ..-.++.. .+++.++.| .+     ..+.+||+.+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence            56666666643     35888998776544432222  11122322 256655554 22     5688888753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.63  E-value=1.1  Score=30.45  Aligned_cols=108  Identities=8%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             eEEEccCCc-EEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee--CCCcEEEEecCCCceeEEE
Q psy6446          25 SVHFATDSY-RLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA--EDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        25 ~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~  101 (134)
                      .+++++.+. ...+-...+.|.+.+++.... .......-.....+++.|.+..|+-..  ..+.|...++.........
T Consensus        88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~  166 (619)
T 3s94_A           88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  166 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             eEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence            388888544 445556678999999876432 223334445678999999755554433  2456777776543332222


Q ss_pred             e-cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         102 E-FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       102 ~-~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      . .-.....+++++++..|..+  ..+.|..+|+.
T Consensus       167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            2 22456899999876655544  45788887764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.55  E-value=0.63  Score=31.51  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=49.0

Q ss_pred             CCEeEEEEeeCCCEEEEee-CCCcEEEEecCCC------ce-------eEEEecCCCCeEEEEccCCcEEEEe-cCCeEE
Q psy6446          64 SGIKHVQFFKNNTRLISCA-EDKTVRLWDVSAS------AE-------VQKLEFGAVPNSLEISRDGTTITVT-HGSCVT  128 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~------~~-------~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~  128 (134)
                      .....+..+|||++++.++ .+.++.++|+..-      +.       .......-.....+|+++|....+- -|.+|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            4557788999999987655 4788999998742      11       2222234556889999999433333 689999


Q ss_pred             EEeCC
Q psy6446         129 FLDAN  133 (134)
Q Consensus       129 i~d~~  133 (134)
                      .|++.
T Consensus       403 kWni~  407 (638)
T 3sbq_A          403 KWNME  407 (638)
T ss_dssp             EEEHH
T ss_pred             EEecc
Confidence            99874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.54  E-value=1.2  Score=30.66  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             eeEeecCCCceeeEEeeC-CCceeeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeE----EeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHP-HIVKSSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTV----YRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~----~~~~~~~v~~~~~~~~   74 (134)
                      +.+||..+.+-...-..+ .....+...-.++..++.|+.++  .+.+||..+..-....    ..........+.+..+
T Consensus       470 v~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          470 NWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             CEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             EEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            467777765432221111 11222233323777888887654  6888998764311000    0011112233444444


Q ss_pred             -CCEEEEeeC--C-----CcEEEEecCCCc------eeEEEe---cCCCCeEEEEccCCcEEEEec---------CCeEE
Q psy6446          75 -NTRLISCAE--D-----KTVRLWDVSASA------EVQKLE---FGAVPNSLEISRDGTTITVTH---------GSCVT  128 (134)
Q Consensus        75 -~~~l~~~~~--d-----~~i~~~d~~~~~------~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~~~i~  128 (134)
                       ++.++.|+.  +     +.+..||+.+..      ......   ....-.++....++..++.|+         ...+.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             556666655  2     358899988776      222111   111122344444366666542         24688


Q ss_pred             EEeCCC
Q psy6446         129 FLDANS  134 (134)
Q Consensus       129 i~d~~t  134 (134)
                      +||+.+
T Consensus       630 ~yd~~t  635 (695)
T 2zwa_A          630 SLDPLS  635 (695)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            998764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.36  E-value=0.74  Score=31.18  Aligned_cols=57  Identities=18%  Similarity=0.115  Sum_probs=40.2

Q ss_pred             EeEEEEeeCCCEEEEeeCC------------CcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe
Q psy6446          66 IKHVQFFKNNTRLISCAED------------KTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  122 (134)
                      .-.+.|+|.++.++.-..+            +.+.+.+..+++..+.+.  ...+++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            4678899999876654322            345666666676655554  46789999999999887764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.84  E-value=1.1  Score=28.03  Aligned_cols=67  Identities=13%  Similarity=0.056  Sum_probs=41.7

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee--EEEe----cCCCCeEEEEccC---CcEEEEe--cC-----Ce
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV--QKLE----FGAVPNSLEISRD---GTTITVT--HG-----SC  126 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~----~~~~v~~~~~~~~---~~~l~~~--~~-----~~  126 (134)
                      -.....++|.|+++.+++ ..++.|.+++  +++..  ..+.    .......++++|+   +..+.++  ..     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345789999999985554 5568899988  34322  1111    1245689999998   4444332  22     56


Q ss_pred             EEEEeC
Q psy6446         127 VTFLDA  132 (134)
Q Consensus       127 i~i~d~  132 (134)
                      |..++.
T Consensus       107 v~r~~~  112 (352)
T 2ism_A          107 VVRLRH  112 (352)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            766664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.74  E-value=0.95  Score=27.23  Aligned_cols=128  Identities=11%  Similarity=0.061  Sum_probs=60.0

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCC-----eEEEEECCCCCCCCeEEeCCCCC-EeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDK-----NIRIYDLNKPDAEPTVYRGHSSG-IKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~-v~~~~~~~   73 (134)
                      +.+||..+.+-...-.  ....... +.. .++..++.|+.++     .+.+||+.+..-  ........+ ........
T Consensus        79 ~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~  154 (302)
T 2xn4_A           79 VDSYDPVKDQWTSVANMRDRRSTLG-AAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW--FHVAPMNTRRSSVGVGVV  154 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEE--EEECCCSSCCBSCEEEEE
T ss_pred             eEEECCCCCceeeCCCCCccccceE-EEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeE--eecCCCCCcccCceEEEE
Confidence            5677777655332222  1111122 222 2567777776543     577888776321  111111111 11111122


Q ss_pred             CCCEEEEeeCC-------CcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          74 NNTRLISCAED-------KTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      +++.++.|+.+       ..+..||+.+.+-...-..  ...-.++... ++..++.| .+     ..+.+||+++
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCC
Confidence            56666665542       3588899887654432221  1111233322 45655554 22     4788898763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.65  E-value=1  Score=27.29  Aligned_cols=128  Identities=8%  Similarity=-0.014  Sum_probs=60.1

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCC-----CeEEEEECCCCCCC-CeEEeCCCCCEeEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSND-----KNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~   73 (134)
                      +.+||..+.+-...-.  .......++.  .+++.++.|+.+     ..+.+||..+..-. .............+.  -
T Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~  167 (308)
T 1zgk_A           92 LDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--L  167 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E
T ss_pred             EEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--E
Confidence            5677776654322111  1111122122  266777777643     35788888763210 000011111111222  2


Q ss_pred             CCCEEEEeeCC-----CcEEEEecCCCceeEEEe--cCCCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          74 NNTRLISCAED-----KTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        74 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      +++.++.|+.+     ..+..||+.+.+-...-.  ....-.++... ++..++.+ .+     ..+.+||+++
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCC
Confidence            56666666654     458889987765432211  11111233332 55555554 22     5788888753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.69  E-value=0.3  Score=35.52  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          65 GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .+.++...++..++++.+.|+.+++|++.+++++....
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34555666788899999999999999999999888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.46  E-value=1.5  Score=26.67  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC------CCeEEEEECCCCCCCCeEEeCCCC-CE-eEEEEee
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN------DKNIRIYDLNKPDAEPTVYRGHSS-GI-KHVQFFK   73 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~-~v-~~~~~~~   73 (134)
                      +.+||..+.+-...-..+...........+++.++.|+.      -..+.+||+.+..-  ........ .. .++. .-
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~-~~  205 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW--KDLAPMKTPRSMFGVA-IH  205 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEE-EE
T ss_pred             EEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE--EECCCCCCCcccceEE-EE
Confidence            456777665533221211111111122246667777764      23588899876431  11111111 11 1122 22


Q ss_pred             CCCEEEEeeCC-----CcEEEEecCCCcee
Q psy6446          74 NNTRLISCAED-----KTVRLWDVSASAEV   98 (134)
Q Consensus        74 ~~~~l~~~~~d-----~~i~~~d~~~~~~~   98 (134)
                      +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            56666666543     24678888776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.83  E-value=1.7  Score=26.32  Aligned_cols=101  Identities=9%  Similarity=0.006  Sum_probs=49.3

Q ss_pred             CCcEEEEecCC--------CeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEEEeeC-C-----CcEEEEecCCC
Q psy6446          31 DSYRLATGSND--------KNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLISCAE-D-----KTVRLWDVSAS   95 (134)
Q Consensus        31 ~~~~l~~~~~d--------~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~   95 (134)
                      ++..++.|+.+        ..+.+||..+..-  .....- ...........+++.++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--eECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56666777632        3588888876421  111000 011111122236666666665 2     36889998876


Q ss_pred             ceeEEEec--CCCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          96 AEVQKLEF--GAVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        96 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      +-...-..  ...-.++... +++.++.| .+     ..+.+||+++
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             eEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCC
Confidence            54332111  1111233322 55555544 32     2688888754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.33  E-value=2.2  Score=26.70  Aligned_cols=50  Identities=10%  Similarity=0.004  Sum_probs=33.1

Q ss_pred             CCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc-eeEEEe----cCCCCeEEEEccC
Q psy6446          64 SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA-EVQKLE----FGAVPNSLEISRD  115 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~----~~~~v~~~~~~~~  115 (134)
                      .....++|.|+++.++ +..++.|.++| .+++ .+..+.    .......++++|+
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pd   83 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPE   83 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCC
Confidence            4578999999998554 45568999887 4454 111111    1245688999997

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.23  E-value=2.3  Score=26.76  Aligned_cols=53  Identities=13%  Similarity=0.047  Sum_probs=37.1

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-------cCCCCeEEEEccC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-------FGAVPNSLEISRD  115 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~v~~~~~~~~  115 (134)
                      -.....++|.|+++.+++-...|.|.+++..+++......       .......++++|+
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            4567899999999977776658999999866555322211       1234678999995

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.16  E-value=0.96  Score=31.42  Aligned_cols=31  Identities=16%  Similarity=0.430  Sum_probs=27.6

Q ss_pred             eCCCEEEEeeCCCcEEEEecCCCceeEEEec
Q psy6446          73 KNNTRLISCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        73 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      .+..++++-+.|..+++|++.+++++.....
T Consensus       229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            3688999999999999999999998887764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=90.10  E-value=1.9  Score=29.27  Aligned_cols=55  Identities=11%  Similarity=0.121  Sum_probs=35.1

Q ss_pred             EEEccCCcEEEEecCC------------CeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEEEe
Q psy6446          26 VHFATDSYRLATGSND------------KNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d------------~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~   81 (134)
                      +.|+|.|++++.-..+            ..+.+.+..+++ +.+++.+. ..+++.+.|+||++.|+..
T Consensus       481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe-EEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            8899999877664432            234444444433 33444443 4689999999999887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.84  E-value=2.9  Score=27.28  Aligned_cols=53  Identities=4%  Similarity=-0.058  Sum_probs=34.5

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec---------CCCCeEEEEccC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---------GAVPNSLEISRD  115 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---------~~~v~~~~~~~~  115 (134)
                      -.....|+|.|+++.+++-...+.|.+++..+++.......         ......++|+|+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            34568999999999777655445788887655543322221         123458999995

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=89.81  E-value=3.4  Score=28.10  Aligned_cols=59  Identities=15%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             CCEeEEEEeeCCCEEEEeeC------------CCcEEEEecCCCceeEEEec--CCCCeEEEEccCCcEEEEe
Q psy6446          64 SGIKHVQFFKNNTRLISCAE------------DKTVRLWDVSASAEVQKLEF--GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~  122 (134)
                      .....+.|.++|...+....            ...+..++..+++....+..  ..+++.++|+||++.|.++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            34678999999887773221            22566677767776555542  3568999999999887764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.65  E-value=4.8  Score=30.84  Aligned_cols=87  Identities=10%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE
Q psy6446          41 DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT  120 (134)
Q Consensus        41 d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  120 (134)
                      ..+|.|.|+..+..+.+..    -..-+.-.+|..+.++.-. ...+.+||+.+...+.......+|.--+|-.+ +.++
T Consensus        47 ~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  120 (1630)
T ss_pred             CceEEEEECCCCCCccccc----ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeE
Confidence            3478899998765442211    1122334567776665543 67899999999888888877778877888644 4555


Q ss_pred             EecCCeEEEEeCC
Q psy6446         121 VTHGSCVTFLDAN  133 (134)
Q Consensus       121 ~~~~~~i~i~d~~  133 (134)
                      .-.+..|..|++.
T Consensus       121 lVT~~aVyHW~~~  133 (1630)
T 1xi4_A          121 LVTDNAVYHWSME  133 (1630)
T ss_pred             EEcCCeEEEeccC
Confidence            5557889999874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.54  E-value=2.8  Score=25.45  Aligned_cols=101  Identities=11%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             CCcEEEEecCC-------CeEEEEECCCCCCCCeEEeCCCCCE-eEEEEeeCCCEEEEeeC------CCcEEEEecCCCc
Q psy6446          31 DSYRLATGSND-------KNIRIYDLNKPDAEPTVYRGHSSGI-KHVQFFKNNTRLISCAE------DKTVRLWDVSASA   96 (134)
Q Consensus        31 ~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~   96 (134)
                      ++..++.|+.+       ..+.+||..+..-  ........+. .......+++.++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            56677777643       2477888776321  1111111111 11112236666666653      2358899988765


Q ss_pred             eeEEEecC--CCCeEEEEccCCcEEEEe-cC-----CeEEEEeCCC
Q psy6446          97 EVQKLEFG--AVPNSLEISRDGTTITVT-HG-----SCVTFLDANS  134 (134)
Q Consensus        97 ~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~-----~~i~i~d~~t  134 (134)
                      -...-...  ..-.++... +++.++.| .+     ..+.+||+++
T Consensus       187 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCC
Confidence            43322211  111233332 45555544 21     4677888753

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=87.44  E-value=3.8  Score=27.85  Aligned_cols=56  Identities=9%  Similarity=0.099  Sum_probs=35.7

Q ss_pred             EEEccCCcEEEEecC------------CCeEEEEECCCCCCCCeEEeCC-CCCEeEEEEeeCCCEEEEee
Q psy6446          26 VHFATDSYRLATGSN------------DKNIRIYDLNKPDAEPTVYRGH-SSGIKHVQFFKNNTRLISCA   82 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~------------d~~v~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~   82 (134)
                      +.|+++|.+.+....            ...+..++..+++ +...+.+. ...++.++|+||++.|+..-
T Consensus       481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            888998887773322            1245556655543 33344432 35789999999999887543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=85.52  E-value=4.7  Score=24.88  Aligned_cols=39  Identities=5%  Similarity=0.040  Sum_probs=18.9

Q ss_pred             eeEeecCCCceeeEEe-e-CCCceeeEEEccCCcEEEEecCC
Q psy6446           2 GTVWDAVSGEELHSFQ-H-PHIVKSSVHFATDSYRLATGSND   41 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d   41 (134)
                      +.+||..+.+-...-. . ....-.++. ..+++.++.|+.+
T Consensus        88 v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~  128 (357)
T 2uvk_A           88 VHKYNPKTNSWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEEETTTTEEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred             EEEEeCCCCcEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence            5677877655332111 1 111112122 2567777888754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.08  E-value=4.8  Score=24.65  Aligned_cols=97  Identities=7%  Similarity=-0.010  Sum_probs=54.0

Q ss_pred             EEEccCCcEEEEecCC--------------CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEee----CCCcE
Q psy6446          26 VHFATDSYRLATGSND--------------KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCA----EDKTV   87 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d--------------~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i   87 (134)
                      --+++++..|+.....              ..|+..++....  ...+...    ....+++++++|+-..    .+..|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~--~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG--STVLDPD----PCIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC--CEEEECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc--ceEeecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence            4567888888766542              357777776643  2233222    1236788888887655    23456


Q ss_pred             EEEecCCCceeEEEecCCCCeEEEEccCCcEEEEec--CCeEEEEeC
Q psy6446          88 RLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDA  132 (134)
Q Consensus        88 ~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~d~  132 (134)
                      ...++.... ...+.....   ..++|+++.|.-..  ...|...++
T Consensus       132 y~~~~dGs~-~~~lt~~~~---~~~~~~g~~iy~t~~g~~~Iy~~~l  174 (302)
T 3s25_A          132 YRIRIDGEE-KKKIKNHYL---FTCNTSDRYFYYNNPKNGQLYRYDT  174 (302)
T ss_dssp             EEEETTSCC-CEEEESSCC---CCSEEETTEEEEECTTTCCEEEEET
T ss_pred             EEEECCCCC-eEEEeCCCc---eEeeEECCEEEEEeCCCceEEEEEC
Confidence            666665433 333332221   34567777766443  356665554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=82.78  E-value=9.8  Score=26.41  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=58.1

Q ss_pred             eeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--C----CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          23 KSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--G----HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                      +.++...+++...+ ++.+ -+..++..+...  ..+.  .    ....|.++...+++..|..+.. +-+..+|..+++
T Consensus       148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~  222 (758)
T 3ott_A          148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF--EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ  222 (758)
T ss_dssp             EEEEEECTTCCEEE-EETT-EEEEEETTTTEE--EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred             EEEEEEcCCCCEEE-EeCC-CHhhCccCCCce--EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence            34466666666544 4444 466777655321  1111  0    1123777776666665555553 457888877654


Q ss_pred             eeEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          97 EVQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        97 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ...... ....|.++...++|.+.+.+. +-+.++|.+
T Consensus       223 ~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~  259 (758)
T 3ott_A          223 IKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHND  259 (758)
T ss_dssp             EEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCT
T ss_pred             EEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecC
Confidence            322111 234577888888888777663 457777653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.36  E-value=2.9  Score=30.12  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCCC
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPDA   54 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~   54 (134)
                      ++...++..++++-+.|+.+|+|++.++..
T Consensus       240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             EEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            366677888999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 3e-14
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +WD  +G  L +          V F +    + + ++DK +R++D        T    H 
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHE 289

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWD 91
             +  + F K    +++ + D+TV++W+
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 4e-11
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
           +S         +         L +GS DK I+++D++      T   GH + ++ V F  
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHS 257

Query: 74  NNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTI 119
               ++SCA+DKT+R+WD      ++ L        SL+  +    +
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 55  EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
           E     GH S +  V F    + ++S +ED T+++WD       + L+
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 23/153 (15%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           +W+  +G  + +F         V    D   +A+ SND+ +R++ +   + +    R H 
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHR 185

Query: 64  SGIKHVQF--------------------FKNNTRLISCAEDKTVRLWDVSASAEVQKLE- 102
             ++ + +                     K    L+S + DKT+++WDVS    +  L  
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 103 FGAVPNSLEISRDGTTI-TVTHGSCVTFLDANS 134
                  +     G  I +      +   D  +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
            E ++   H   V + V F      + + S D  I+++D    D E T  +GH+  ++ 
Sbjct: 7  PPEKYALSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGHTDSVQD 64

Query: 69 VQFFKNN 75
          + F  + 
Sbjct: 65 ISFDHSG 71

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
            +        SSV    +   + + S DK I+++++       T + GH   ++ V+  +
Sbjct: 95  RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQ 153

Query: 74  NNTRLISCAEDKTVRLWDVSASAEVQKL-EFGAVPNSLEISRDGTTITVTHGSCVTFLDA 132
           + T + SC+ D+TVR+W V+      +L E   V   +  + + +  +++  +      +
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

Query: 133 NS 134
             
Sbjct: 214 GK 215

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 1e-13
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
           +S  +     +SV F+     L  G +D N  ++D  K D    V  GH + +  +    
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTD 322

Query: 74  NNTRLISCAEDKTVRLWD 91
           +   + + + D  +++W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 4e-13
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRI-YDLNKPDAEPTVYRGH 62
           +WD   G    +F       +++ F  +    ATGS+D   R+       +     +   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE--FGAVPNSLEISRDGTTI 119
             GI  V F K+   L++  +D    +WD   +     L      V + L ++ DG  +
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMAV 327

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.8 bits (99), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYD 48
           VWDA+  +       H + V S +    D   +ATGS D  ++I++
Sbjct: 296 VWDALKADRAGVLAGHDNRV-SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 58  VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP-NSLEISRDG 116
             RGH + I  + +  ++  L+S ++D  + +WD   + +V  +   +    +   +  G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 117 TTITVTHGSC 126
             +       
Sbjct: 110 NYVACGGLDN 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 6e-13
 Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
           +          S+ FA       +   D  +  +    P          SS +       
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISV 316

Query: 74  NNTRLISCAEDKTVRLWDV 92
           ++  +++ + DK   +++V
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-07
 Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTV----YR 60
                  ++++  H  +V  +V  +  +  + TG     ++++D++ P  +  V      
Sbjct: 37  GIPRHARQINTLNHGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL 94

Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLW 90
              + I+  +   +   LI   E  T+ +W
Sbjct: 95  NRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDL 49
            W    G  +   +    V  S   + D   + TGS DK   +Y++
Sbjct: 291 AWRTPYGASIFQSKESSSV-LSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 9e-07
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 59  YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTT 118
              H S +  ++F       +S  +D  +  W     A + + +  +   S +IS D   
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320

Query: 119 I 119
           I
Sbjct: 321 I 321

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP------NSLEISR 114
            H   +  V        + +      V++WD+S       +             S ++  
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 115 DGTTIT 120
           DG T+ 
Sbjct: 108 DGCTLI 113

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 3e-12
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 14 HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFF 72
          HSF    I  S   +  D  ++A   N+  + IY+ +          + H+  +  V + 
Sbjct: 3  HSFLVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 73 KNNTRLISCAEDKTVRLWD 91
           ++ R+++C  D+   +W 
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 1e-06
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           ++   S     SF     V         + R    + DK           A   +   H 
Sbjct: 268 LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG--LDSLHK 325

Query: 64  SGIKHVQFFK----NNTRLISCAEDKTVRLWDVSA 94
           + +  +          ++  +   D  + +WDV +
Sbjct: 326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 66  IKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTI 119
           I    + K+ T++  C  +  V +++ S +  VQ  E     G V   ++ + D   I
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRI 66

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 7e-12
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
           ++       K +     +   +ATGS D NI IY + +P         H  G+ ++ +  
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268

Query: 74  NNTRLISCAEDKTVRLWDV 92
            +  L+S   D  ++ W+V
Sbjct: 269 PS-TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 8e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 58 VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVS 93
             GH+ GI  +        LIS + D  +  W  S
Sbjct: 8  TISGHNKGITALTV----NPLISGSYDGRIMEWSSS 39

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.8 bits (132), Expect = 8e-11
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFF 72
           +S+       + V ++ D+ RLATGS D ++ ++++NKP   P + +  H+    +   +
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

Query: 73  KNNTRLISCAEDKTVRLWDVS 93
            N T ++S  +D  ++ W+V 
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 3e-07
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 58  VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 104
           V  GH+  I  +    +   L S   +  +  WD+S     +     
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 3e-07
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 10 GEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKH 68
          G        H   + +++  + D   L +   + +I  +D++   +       H++ I  
Sbjct: 2  GSIDQVRYGHNKAI-TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 69 VQFFKNNTRLISCAEDKTVRLWDVSAS 95
          ++       L + + D  +++     S
Sbjct: 61 IKTTSKG-DLFTVSWDDHLKVVPAGGS 86

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 7e-10
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
               SG    ++        SV    +   + +GS D+ +  +D    +    + +GH +
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRN 351

Query: 65  GIKHVQFFK------NNTRLISCAEDKTVRLWDV 92
            +  V                + + D   R+W  
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 7e-08
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 2   GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT---- 57
           G + + +  E      H   V  SV F  D   + +GS D+++++++L   + +      
Sbjct: 237 GFLVERLDSENESGTGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 58  -------VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-------F 103
                   Y GH   +  V   +N+  ++S ++D+ V  WD  +   +  L+        
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 104 GAVPNSLEISRDGTTI 119
            AV N   +  +    
Sbjct: 356 VAVANGSSLGPEYNVF 371

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN------KPDAEPTV 58
           WD  +G+   +      V +      D   +A GS D+ +R++D        + D+E   
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 59  YRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ 99
             GH   +  V F ++   ++S + D++V+LW++  +    
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKS-----SVHFATDSYRLATGSNDKNIRIYDLNK 51
            WD  SG  L   Q H + V S           +    ATGS D   RI+   K
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 1e-09
 Identities = 13/87 (14%), Positives = 33/87 (37%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
              V  ++             + ++ D  ++A+ S DK I+I+++     E T+  G   
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 65  GIKHVQFFKNNTRLISCAEDKTVRLWD 91
             + +        L+S + +  +   +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 4e-06
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
           +       ++   +   ++    +     +  +Y  HS      +   +     S    
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 85 KTVRLW 90
            VR+W
Sbjct: 80 GNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 4   VWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDL 49
           +W+  + +   +      I    +        L + S +  I   + 
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 62  HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGA--VPNSLEISRDGTTI 119
           HS  +  + +  + T++ S + DKT+++W+V+     + +  G       L I      +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 120 -TVTHGSCVTFLD 131
            +++    + F++
Sbjct: 297 VSISANGFINFVN 309

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT------ 57
           +WD   G  L   +    +        D+ R+ +G+ D  I+++DL              
Sbjct: 202 LWDIECGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 58  --VYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWD 91
                 HS  +  +QF  +  +++S + D T+ +WD
Sbjct: 260 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-07
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VW+  + E + +                   + +GS+D  IR++D+        +     
Sbjct: 162 VWNTSTCEFVRTLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEG 216

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLE 111
                     +N R++S A D  +++WD+ A+ + +         +L 
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 61  GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
             S G+  +Q+  ++ +++S   D T+++WD +     + L 
Sbjct: 13  ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 6e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 14 HSFQ----HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHV 69
          HS Q         K       D  ++ +G  D  I+I+D N  + +     GH+  +  +
Sbjct: 3  HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCL 61

Query: 70 QF 71
          Q+
Sbjct: 62 QY 63

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
           VWD  S  ++   +     +++V+    D   + + S D+ I++++ +  +   T   GH
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT-LNGH 177

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
             GI  +Q+   +  ++S + D T+RLWD+   A ++ LE            +   ++  
Sbjct: 178 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 123 HGSCVTFLDANS 134
           +   +   D  +
Sbjct: 236 YDGKIKVWDLVA 247

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 9e-09
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWD  +G  +H+      + S +        L +G+ D  ++I+D+       T+   + 
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF------GAVPNSLEISRDGT 117
                     N   +I+ ++D TV+LWD+     ++ L        G V   +  S    
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318

Query: 118 TITV 121
              V
Sbjct: 319 VCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 5  WDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
          W     +     + H   V + + F     R+ +GS+D  ++++         T   GH+
Sbjct: 1  WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHT 57

Query: 64 SGIKHVQFFKN 74
           G+   Q   N
Sbjct: 58 GGVWSSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 55  EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
            P V +GH   +          R++S ++D T+++W       ++ L 
Sbjct: 8   SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-05
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 4   VWDAVSGEELHSFQHPHI-VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-- 60
           +WD  +G+ L + Q P+    +      +   + T S+D  ++++DL   +    +    
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 61  --GHSSGIKHVQFFKNNTRLISCAEDKT----VRLWDVSA 94
             G    +  ++           + + T    + + D   
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           VWD  +G+ LH         +      D  R+ +G+ D  ++++D        T  +GH+
Sbjct: 121 VWDIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-LQGHT 177

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK 100
           + +  +QF  +   ++S + D ++R+WDV     +  
Sbjct: 178 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 212

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.9 bits (117), Expect = 1e-08
 Identities = 5/79 (6%), Positives = 22/79 (27%), Gaps = 5/79 (6%)

Query: 24  SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE 83
           S       +           +  YD+              + +  ++   +   ++   +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVRKD 334

Query: 84  DKTVRLWDVSASAEVQKLE 102
           D  +  + +    + + +E
Sbjct: 335 DGKIYTFPLEKPEDERTVE 353

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-08
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQ--- 70
              Q P           DS + AT   D  IR++D+         +      + + Q   
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-WTLDKQQLGNQQVGV 303

Query: 71  FFKNNTRLISCAEDKTVRLWDV 92
               N R+IS + D T+  +++
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 68  HVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-----GAVPNSLEISRDGTTITVT 122
               + ++ +  +   D T+R+WDV+ S  VQK        G     +  + +G  I+++
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 123 HGSCVTFLD 131
               + F +
Sbjct: 316 LDGTLNFYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 4e-08
 Identities = 12/133 (9%), Positives = 31/133 (23%), Gaps = 7/133 (5%)

Query: 3   TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
             W   S     S  +         F  D    AT          DL         +   
Sbjct: 196 YFWPHQSPRHEFSMLYTI-----ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
           +           +   I    +  +  +D+     ++          +   + G  + + 
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG 309

Query: 123 -HGSCVTFLDANS 134
              + +   + ++
Sbjct: 310 GTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 5e-06
 Identities = 12/107 (11%), Positives = 27/107 (25%), Gaps = 2/107 (1%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             D  +G+                  +             +  YDL +          H+
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT 293

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
                V F K   +L        + +++     +V+ ++      S 
Sbjct: 294 --YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 8/104 (7%)

Query: 28  FATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL-ISCAEDKT 86
                  +   +   N+ + D+       +       G        +N    +       
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 87  VRLWDVSASAEVQKLEF-------GAVPNSLEISRDGTTITVTH 123
           +   D+                  G    S  IS DG  +  T 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFK 73
               H   + +   F      L +GS +    IY+L             +  I  V  FK
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVN-FK 333

Query: 74  NNTRLISCAEDKTVRLWDVSAS 95
             T + +  +D    L  +  S
Sbjct: 334 GKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 5e-05
 Identities = 10/98 (10%), Positives = 33/98 (33%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
           V+D+++ + L           ++ +A     ++  ++                      +
Sbjct: 37  VYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL 101
                +  +KN   +++ + D T+ +W +   + V   
Sbjct: 97  VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR 77
          H   V + + F  +   + TG++DK IR+YD            GH  G+  +++      
Sbjct: 11 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-I 66

Query: 78 LISCAEDKTVRLW 90
          L+S + D+TVR+W
Sbjct: 67 LVSGSTDRTVRVW 79

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 7e-05
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 55  EPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF--GAVPNSLEI 112
           + T  RGH + +     F  +  +I+ A+DK +R++D      + +L    G V  +L+ 
Sbjct: 4   QRTTLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV-WALKY 61

Query: 113 SRDGTTITVTHGSC 126
           +  G  ++ +    
Sbjct: 62  AHGGILVSGSTDRT 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-07
 Identities = 5/74 (6%), Positives = 20/74 (27%), Gaps = 4/74 (5%)

Query: 57  TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL----EFGAVPNSLEI 112
            + +     I  ++   + + L+  + D ++ ++     A+   L     +         
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 113 SRDGTTITVTHGSC 126
             +           
Sbjct: 65  IDNTDLQIYVGTVQ 78

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 6e-07
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNTRLISC 81
          S +        L   S D ++ +Y  +       + +   +   +    F  N    I  
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74

Query: 82 A 82
           
Sbjct: 75 G 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 5e-06
 Identities = 8/127 (6%), Positives = 35/127 (27%), Gaps = 14/127 (11%)

Query: 14  HSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR------------- 60
                 + ++       +    A  S D  + +   +    +    +             
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 61  -GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI 119
              +  +  ++F   +  L +   D  +  W++    +++        + ++I+     +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 120 TVTHGSC 126
            +     
Sbjct: 308 CLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
            W+  + +++ +F   +   S V  A     L   ++D   +         E      ++
Sbjct: 277 CWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSDDTFKTNAAIDQTIE-----LNA 330

Query: 64  SGI 66
           S I
Sbjct: 331 SSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 3   TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH 62
             +            +     +S+ F+     L T  +D  I  ++L          + +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293

Query: 63  SSGIKHVQFFKNNTRLISCAEDKTVRLWDV 92
              +  V+   ++  L     D T +    
Sbjct: 294 EDSV--VKIACSDNILCLATSDDTFKTNAA 321

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-06
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 29  ATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-----GHSSGIKHVQFFK-------NNT 76
           +  +    + S D  ++++D    D E    +      H SG+ HV   +          
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80

Query: 77  RLISCAEDKTVRLWDVSASAEVQKL 101
            + + +    +  + ++   E +K+
Sbjct: 81  LVATTSFSGDLLFYRITREDETKKV 105

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-05
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 57  TVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG 104
              + H + I  V     N+  +SC+ D  +++WD          +  
Sbjct: 8   NAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 4e-04
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 5   WDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSS 64
            +++   +         +    +         T   ++   +               HSS
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290

Query: 65  GIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTI 119
            +  + F  +   L S   D  +R WDV     +  L           + L +   G ++
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 120 TVTHGSCVTFLD 131
                  V FL 
Sbjct: 351 AEPGVFDVKFLK 362

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 4e-06
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 3/111 (2%)

Query: 25  SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED 84
                 D       +    +   DL   +      R               TR       
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259

Query: 85  KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS 134
             +  +D+  +A ++++       S+ +S DG+T+ +      +   DA +
Sbjct: 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 4   VWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS 63
             D  +GE                 A +  +         +  +DL K  +   V     
Sbjct: 223 TMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV--PLP 279

Query: 64  SGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE 102
                V    + + +        +  +D     +  +++
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 1   MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLN--KPDAEPTV 58
           +   +D      +     PH    SV+ +TD   +  G    ++  YD    +   +  +
Sbjct: 261 VLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

Query: 59  YRGHSSGIKHVQFF 72
               S  +  V+ F
Sbjct: 320 PGNASMSLASVRLF 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 78  LISCAEDKTVRLWDVSASAEVQKL---EFGAVPNSLEISRDGTTITVT--HGSCVTFLDA 132
           +++ A    + + D    A  + +   + G  P    ++  G     T      +  +D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 133 NS 134
            +
Sbjct: 64  VT 65

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 79  ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS 134
           I+ +E   + + DV+++     +  G+ P    IS DGT + V   H + V+ +D  +
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 35.6 bits (80), Expect = 8e-04
 Identities = 5/50 (10%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 62  HSSGIKHVQFFKNNTRL-ISCAEDKTVRLWDVSASAEVQKLEFGAVPNSL 110
                  +    +  ++ ++ +   TV + D + +     +  G  P + 
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYAS 291

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 6e-05
 Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 27  HFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI--SCAED 84
                       +  + + + D      E          I  +   ++   L+      D
Sbjct: 265 LLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 322

Query: 85  KTVRLWDVSASAEVQKLE-FGAVPNSLEISRDG 116
           KT+ + D  +  E++ +   G  P  +  +  G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 9/100 (9%), Positives = 24/100 (24%)

Query: 26  VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDK 85
           +  ++   +                           H +  +                 +
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280

Query: 86  TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGS 125
            V + D      + K E G   +S+ +S+D   +     +
Sbjct: 281 FVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 8/132 (6%), Positives = 36/132 (27%), Gaps = 19/132 (14%)

Query: 3   TVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNI-----------------R 45
               A       +       + + +F +  +++     + +                   
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295

Query: 46  IYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI--SCAEDKTVRLWDVSASAEVQKLEF 103
              +     + +    +      +   ++       + A  + + ++D ++  +   +E 
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355

Query: 104 GAVPNSLEISRD 115
              P SL +  +
Sbjct: 356 DKGPESLSVQNE 367

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 7e-04
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 67  KHVQFFKN--NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
           K      +  N   ++  +   + L D  +   V+ ++ G   +   +S  G  + V 
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 75  NTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT 122
           N   ++  +   + L D S       L+ G   +   +S  G  + V 
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI 79

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 33.7 bits (75), Expect = 0.004
 Identities = 8/96 (8%), Positives = 23/96 (23%), Gaps = 6/96 (6%)

Query: 37  TGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLISCAE-DKTVRLWDVSA 94
                + I +++LN   A            ++ +    +   L      +  V  + ++ 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 95  SAEVQKLEF----GAVPNSLEISRDGTTITVTHGSC 126
                              +     G  + V   + 
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.72
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.45
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.94
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.58
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.05
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.6
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.2
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.08
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.98
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.92
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.9
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.75
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.74
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.68
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.34
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.53
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.15
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.41
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.01
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.4

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-28  Score=147.35  Aligned_cols=129  Identities=20%  Similarity=0.291  Sum_probs=117.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ++++||+++++.+..+.+...+.. ++|+|+++.+++++.|+.+++||++....  .....|...|.+++|+|++++|++
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEE-EEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccceeecccccccceEE-EEEcccccccceecccccccccccccccc--ccccccccccceEEECCCCCEEEE
Confidence            378999999999988888777666 99999999999999999999999987653  345789999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      ++.|+.|++||+.+++.+..+.+...|.+++|+|++++|+++ .|+.|++||+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999999999999999999999998875 7899999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.5e-28  Score=148.49  Aligned_cols=131  Identities=21%  Similarity=0.343  Sum_probs=113.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-EEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|++||+.+++++..+..+...+.+++|+|++++|++|+.|+.+++|+++....... ....+...+.+++|+|++++|+
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence            378999999999999986666666699999999999999999999999987543321 1235567799999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +++.||.|++||+.+++.+..+. |..+|.+++|+|++.+|+++ .||.|++||
T Consensus       287 ~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999998887 67899999999999988875 789999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.1e-27  Score=143.37  Aligned_cols=132  Identities=17%  Similarity=0.247  Sum_probs=114.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcE-EEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYR-LATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +++||+.+++....+..+...+.+++|+|+++. |++|+.|+.|++||+++... ......|...|.++.|+|+++++++
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeccccccccccccccccccc-ccccccccccccccccCcccccccc
Confidence            679999999998888866666666999998875 78899999999999998653 4567789999999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEe--------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLE--------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.+++||..++.....+.        |...|.+++|+|++++|+++ .||.|++||+++
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999988777664        34678999999999999876 689999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.8e-26  Score=138.45  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      |.+||+.+++....+..+...+.+++|+|+|++|++|+.||.|++||+.+..... ..+..|.+.|.+++|+|+++++++
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccc
Confidence            6799999999988888655666679999999999999999999999998866442 456789999999999999999998


Q ss_pred             eeC--CCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcE-EEEe-cCCeEEEEeCCC
Q psy6446          81 CAE--DKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTT-ITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~--d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~-~~~~i~i~d~~t  134 (134)
                      ++.  +..+++|++.+++....+. +...|.+++|+|++++ ++++ .|+.|++||+++
T Consensus       120 ~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1         120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            876  4569999999888777665 4677999999999975 5544 689999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.6e-26  Score=141.28  Aligned_cols=133  Identities=12%  Similarity=0.170  Sum_probs=108.8

Q ss_pred             CeeEeecCCCc--eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-CeEEeCCCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGE--ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-PTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +|+|||..+++  .+..++++...+.+++|+|++++|++++.|+.|++||+.+.... ...+.+|...|.+++|+|+++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  109 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK  109 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccccc
Confidence            37899998776  45667755666666999999999999999999999999865422 2234678889999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe-----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE-----FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +++++.|+.+++|++..........     +...|.+++|+|++++++++ .|+.|++||+.
T Consensus       110 l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_         110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            9999999999999987765443332     35678999999999999876 78999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.5e-26  Score=141.59  Aligned_cols=112  Identities=19%  Similarity=0.303  Sum_probs=93.8

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-----CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc---EEEEecC
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-----PTVYRGHSSGIKHVQFFKNNTRLISCAEDKT---VRLWDVS   93 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~~~d~~   93 (134)
                      .+.+++|+|++ +|++|+.|+.|++||+.+++..     ...+.+|...|.+++|+|++++|++++.|+.   |++||+.
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence            34569999987 8899999999999999876432     2235678999999999999999999999874   8999999


Q ss_pred             CCceeEEEe--------------cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          94 ASAEVQKLE--------------FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        94 ~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++.+..+.              |...|.+++|+|++++|+++ .|++|++||+++
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            998887764              55779999999999999976 689999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.5e-26  Score=134.86  Aligned_cols=132  Identities=14%  Similarity=0.189  Sum_probs=105.8

Q ss_pred             CeeEeecCCCceeeEEe-eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeC-----
Q psy6446           1 MGTVWDAVSGEELHSFQ-HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKN-----   74 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----   74 (134)
                      ++++|++...+....+. .....+.+++|+|++.+|++|+.||.|++||+.++......+.+|...|.+++|+|.     
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  221 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  221 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccc
Confidence            37889987666655554 344456669999999999999999999999998865443445689999999999874     


Q ss_pred             -----CCEEEEeeCCCcEEEEecCCCce-eEEEe-cCCCCeEEEEccCCcEEEEecCCeEEEEeC
Q psy6446          75 -----NTRLISCAEDKTVRLWDVSASAE-VQKLE-FGAVPNSLEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        75 -----~~~l~~~~~d~~i~~~d~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                           +.++++++.|+.|++||++++.. ...+. |...|.+++|+|++.++.++.|+.|++||+
T Consensus       222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                 46899999999999999977543 33333 678899999999987777778999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.1e-25  Score=131.80  Aligned_cols=130  Identities=23%  Similarity=0.394  Sum_probs=113.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCC--------------------cEEEEecCCCeEEEEECCCCCCCCeEEe
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDS--------------------YRLATGSNDKNIRIYDLNKPDAEPTVYR   60 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~d~~v~i~~~~~~~~~~~~~~   60 (134)
                      +|++|+..+++.+..+..+...+.++.|+|++                    ..+++++.|+.+++|++.++.. ...+.
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~  244 (317)
T d1vyhc1         166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLV  244 (317)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred             eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE-EEEEe
Confidence            47899999999998888655666668887753                    4688999999999999998654 45678


Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      +|...|.+++|+|++++|++++.||.|++||+.+++++..+. |...|.+++|+|++++|+++ .||.|++||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999999988887 57899999999999988875 789999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.8e-25  Score=135.15  Aligned_cols=133  Identities=18%  Similarity=0.306  Sum_probs=107.6

Q ss_pred             CeeEeecCCCceeeEEe-------eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC-----------CeEEeCC
Q psy6446           1 MGTVWDAVSGEELHSFQ-------HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE-----------PTVYRGH   62 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----------~~~~~~~   62 (134)
                      +|++||..+++.+..+.       .+...+.++.|+|++++|++++.|+.+++||+.+....           ......|
T Consensus       228 ~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  307 (388)
T d1erja_         228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH  307 (388)
T ss_dssp             CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred             eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc
Confidence            47899999988877664       22344556999999999999999999999999764321           1234568


Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEE------ccCCcEEEEe-cCCeEEEEeCC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEI------SRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~------~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      ...|.+++|+|++++|++++.||.|++||+++++++..+. |...|.++++      +|++.+|+++ .||.|++||++
T Consensus       308 ~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8899999999999999999999999999999999998887 5778888875      5788888875 68999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-24  Score=130.75  Aligned_cols=132  Identities=19%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.++++......+...+.+++|+++++.+++++.|+.+++||++++... . ...|...|.+++|+|+++.+++
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~-~-~~~~~~~i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-Q-QHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-E-EEECSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceee-c-ccccccceEEEEEcccccccce
Confidence            4789999999988887755566666999999999999999999999999886533 2 3457889999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.+++||+++++......+...|.+++|+|++++++++ .|+.|++||+++
T Consensus       242 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             eccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999887777788899999999999988875 689999999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.8e-24  Score=129.14  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=99.8

Q ss_pred             eeEeecCCCceeeE--EeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC--CeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHS--FQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE--PTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |++||+.+++....  ..|... +.+++|+|++++|++++.|+.+++||+.++...  ...+.+|...|.+++|+|++++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSC-EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78999987775443  235444 455999999999999999999999998765422  2345678999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe---c-CCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE---F-GAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +++++.|+.|++||+.++.......   + ...+.++.+. ++.+|++ +.|+.|++||+.
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEecc
Confidence            9999999999999998876544433   2 3445666654 4556655 578999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.1e-24  Score=128.14  Aligned_cols=134  Identities=22%  Similarity=0.342  Sum_probs=111.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCC--------------------------
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDA--------------------------   54 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--------------------------   54 (134)
                      +|+|||+.+++.+..++.+...+.+++|+|+++++++++.|+.+++|+......                          
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (340)
T d1tbga_          78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI  157 (340)
T ss_dssp             EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEE
T ss_pred             ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccc
Confidence            489999999999999986666666699999999999999999999988542110                          


Q ss_pred             ------------------------------------------------------------CCeEEeCCCCCEeEEEEeeC
Q psy6446          55 ------------------------------------------------------------EPTVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus        55 ------------------------------------------------------------~~~~~~~~~~~v~~~~~~~~   74 (134)
                                                                                  ....+.+|...|.+++|+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~  237 (340)
T d1tbga_         158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN  237 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC
Confidence                                                                        01134568889999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++|++++.|+.+++||++.......+.   +...+.+++|+|++++++++ .||.|++||+++
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence            9999999999999999999888877765   34668999999999999876 689999999863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.8e-25  Score=134.88  Aligned_cols=113  Identities=12%  Similarity=0.280  Sum_probs=96.1

Q ss_pred             CceeeEEEccCCcEEEEecCCCeEEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          21 IVKSSVHFATDSYRLATGSNDKNIRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      ..++|++|+|++++|++++.|+.|++|+..+++ .....+.+|.++|.+++|+|++++|++++.|+.|++||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            345669999999999999999999999997654 2335578999999999999999999999999999999998776555


Q ss_pred             EEe---cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         100 KLE---FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       100 ~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .+.   +...+.+++|+|+++.++++ .++.|++|+++
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeee
Confidence            443   45779999999999988876 68999999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=8.5e-23  Score=121.64  Aligned_cols=132  Identities=19%  Similarity=0.302  Sum_probs=114.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCC------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNN------   75 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------   75 (134)
                      +++||+.+++.+..+..+.....+++|+|+++.|++++.|+.+++|++.+... ...+.+|...+..++++|++      
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~  203 (317)
T d1vyhc1         125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSIS  203 (317)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred             eeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee-eEEEecCCCCceEEEEeeccccceee
Confidence            68999999999999986666666799999999999999999999999988654 45677888999999988754      


Q ss_pred             --------------CEEEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          76 --------------TRLISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        76 --------------~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                                    ..+++++.|+.+++||+++++++..+. +...+.+++|+|++++|+++ .||.|++||+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence                          468899999999999999999888876 57889999999999988875 789999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-24  Score=134.64  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=85.3

Q ss_pred             CeeEeecCCCceeeEEe------eCCCceeeEEEccCCcEEEEecCCC---eEEEEECCCCCCCC------------eEE
Q psy6446           1 MGTVWDAVSGEELHSFQ------HPHIVKSSVHFATDSYRLATGSNDK---NIRIYDLNKPDAEP------------TVY   59 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~------------~~~   59 (134)
                      +|++||+.+++++..++      ++...+.+++|+|++++|++|+.|+   .+++||+.++....            ..+
T Consensus       206 ~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~  285 (393)
T d1sq9a_         206 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  285 (393)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeee
Confidence            48999999999887665      2344566699999999999999886   58999998754321            123


Q ss_pred             eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEe
Q psy6446          60 RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .+|.+.|++++|+|++++|++++.|++|++||+.+++++..+.
T Consensus       286 ~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            4799999999999999999999999999999999999998886

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-23  Score=123.38  Aligned_cols=128  Identities=24%  Similarity=0.447  Sum_probs=101.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeC---CCCCEeEEEEeeCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRG---HSSGIKHVQFFKNNTR   77 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~   77 (134)
                      +|++||+++++++..+..+...+.++.++  +++|++++.|+.|++||+...... ..+..   |...+.++.+  ++++
T Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~  272 (342)
T d2ovrb2         198 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQF--NKNF  272 (342)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEE--CSSE
T ss_pred             eEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeeccc--CCCe
Confidence            48999999999999888666666656665  579999999999999999875543 33433   3445555554  6789


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe------cCCCCeEEEEccCCcEEEEe-cCC----eEEEEeCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE------FGAVPNSLEISRDGTTITVT-HGS----CVTFLDAN  133 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~-~~~----~i~i~d~~  133 (134)
                      +++++.||.|++||+++++.+..+.      +...|.+++|+|++.+++++ .||    .|++||+.
T Consensus       273 ~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            9999999999999999999988775      34569999999999998886 455    59999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=3.4e-23  Score=123.59  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=95.5

Q ss_pred             ceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE
Q psy6446          22 VKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL  101 (134)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  101 (134)
                      ...+++|+|+++.+++++.|+.+++||+++..........|...|.+++|+|+++++++++.|+.+++||+.++......
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34559999999999999999999999998755333345678899999999999999999999999999999887655433


Q ss_pred             e----cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446         102 E----FGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus       102 ~----~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .    +...|.+++|+|++.+++++ .|+.|++||+++
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            2    46789999999999999876 689999999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.2e-22  Score=121.61  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      .|++||+.+++.+...........++.|+|+++.+++++.|+.+++|++.++.. ...+.+|...|.+++++  ++++++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~~  258 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLS--DKFLVS  258 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEEC--SSEEEE
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc-ccccccccccccccccc--cceeee
Confidence            378999999999888885555556699999999999999999999999998654 45678999999999885  579999


Q ss_pred             eeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~t  134 (134)
                      ++.||.|++||+++.................+++++.+++++.|+.|++||+++
T Consensus       259 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTT
T ss_pred             eecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCC
Confidence            999999999999988776665544444445678888999888999999999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.2e-23  Score=123.93  Aligned_cols=133  Identities=13%  Similarity=0.130  Sum_probs=104.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcE-EEEecCCCeEEEEECCCCCCCCe--EEeCCCCCEeEEEEeeC-CCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYR-LATGSNDKNIRIYDLNKPDAEPT--VYRGHSSGIKHVQFFKN-NTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~   77 (134)
                      +.+|++.+++++..+..+...+.+++|+|+++. +++++.|+.+++|+....+....  ....|...|.+++|+|+ +.+
T Consensus       141 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~  220 (325)
T d1pgua1         141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF  220 (325)
T ss_dssp             EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             EEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee
Confidence            578999999999988855566666999998765 67889999999999876442221  12456788999999996 688


Q ss_pred             EEEeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEc---cCCcEEEEe-cCCeEEEEeCCC
Q psy6446          78 LISCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEIS---RDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        78 l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~---~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++++.|+.|++||+++++.+..+. +..++.++.|+   |++++|+++ .|+.|++||+++
T Consensus       221 l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999999999888776 34455544444   677777764 789999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-22  Score=124.16  Aligned_cols=132  Identities=20%  Similarity=0.328  Sum_probs=103.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEcc-CCcEEEEecCCCeEEEEECCCCCCCC------eEEeCCCCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFAT-DSYRLATGSNDKNIRIYDLNKPDAEP------TVYRGHSSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~------~~~~~~~~~v~~~~~~~~   74 (134)
                      +++||..+........+...... +.+.+ ++++|++++.|+.+++|+..++....      ....+|...|.+++|+|+
T Consensus       187 i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDGVTT-VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEE-EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             eeeeecccccccccccccccccc-ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            78999999888888777777777 55554 88999999999999999998754321      123468899999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeE-------------EEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          75 NTRLISCAEDKTVRLWDVSASAEVQ-------------KLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        75 ~~~l~~~~~d~~i~~~d~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      +++|++++.|+.+++||++++....             ...+...+.+++|+|++++|+++ .||.|++||+++
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~  339 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  339 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999999999999997654322             11246788999999999998876 689999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.3e-22  Score=122.75  Aligned_cols=131  Identities=17%  Similarity=0.227  Sum_probs=99.8

Q ss_pred             CeeEeecCCCceeeEEe---eCCCceeeEEEccC-CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEe---e
Q psy6446           1 MGTVWDAVSGEELHSFQ---HPHIVKSSVHFATD-SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFF---K   73 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~---~   73 (134)
                      ++++||..+++....+.   .+...+.+++|+|+ +.++++++.|+.|++||+++++. ...+.+|...+..+.|+   |
T Consensus       183 ~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~~~~s~~~~  261 (325)
T d1pgua1         183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL  261 (325)
T ss_dssp             EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES
T ss_pred             ccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc-cccccccccccccceeeeecc
Confidence            37899998888776664   23344566999996 68899999999999999988654 35667788777766665   6


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCceeEEEec-CC--CCeE--EEEccCCcEEEEecCCeEEEEeC
Q psy6446          74 NNTRLISCAEDKTVRLWDVSASAEVQKLEF-GA--VPNS--LEISRDGTTITVTHGSCVTFLDA  132 (134)
Q Consensus        74 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~--~v~~--~~~~~~~~~l~~~~~~~i~i~d~  132 (134)
                      ++++|++++.|+.|++||+++++++..+.. ..  .+..  +.+.+++.++.++.||.|++||+
T Consensus       262 dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            889999999999999999999999888763 22  2333  44445555444567899999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.8e-21  Score=117.54  Aligned_cols=123  Identities=13%  Similarity=0.214  Sum_probs=92.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEE-eeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQF-FKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~   79 (134)
                      +|++||..++.++..++.+...+.++.++  +++|++++.||.|++||+++..   ..+..|...+..+.+ ++++++++
T Consensus       224 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~  298 (355)
T d1nexb2         224 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILV  298 (355)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEE
T ss_pred             eEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEE
Confidence            47899999999999998666666668886  5789999999999999998754   345566666666654 55666555


Q ss_pred             EeeCCCcEEEEecCCCceeEEE--ecCCCCeEEEEccCCcEEEE-ecCCeEEEE
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDGTTITV-THGSCVTFL  130 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~-~~~~~i~i~  130 (134)
                      + +.|+.|++||+++++.+...  .+...|.+++|+|+. ++++ +.||++++|
T Consensus       299 ~-g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~~s~dg~~~l~  350 (355)
T d1nexb2         299 S-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE  350 (355)
T ss_dssp             E-EETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEEEESSSCEEEE
T ss_pred             E-EeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEEEECCCcEEEE
Confidence            5 55899999999999887532  256789999999874 4544 568875554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.2e-20  Score=114.45  Aligned_cols=129  Identities=12%  Similarity=0.098  Sum_probs=104.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC--eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK--NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      |++||..++..++ +.|...+. +++|+|||+.|++++.+.  .+++||..++.  ...+..|...+..++|+|++++|+
T Consensus        26 v~v~d~~~~~~~~-~~~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~~~~~~~v~~~~~spdg~~l~  101 (360)
T d1k32a3          26 AFIQDVSGTYVLK-VPEPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAV  101 (360)
T ss_dssp             EEEECTTSSBEEE-CSCCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEE
T ss_pred             EEEEECCCCcEEE-ccCCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEeeCCCceEEeeeecccccccc
Confidence            7899998777654 45655554 599999999998766553  78999998754  235678999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCceeEEEe-cCCCCeEEEEccCCcEEEEec-----------CCeEEEEeCCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLE-FGAVPNSLEISRDGTTITVTH-----------GSCVTFLDANS  134 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------~~~i~i~d~~t  134 (134)
                      +++.++.+.+|+..+++....+. +...+.+++|+|+|++|+.+.           ++.+++||+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc
Confidence            99999999999999998887776 456788999999999988531           24688999763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9.8e-21  Score=118.56  Aligned_cols=132  Identities=9%  Similarity=-0.065  Sum_probs=103.1

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-EE---eCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VY---RGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~---~~~~~~v~~~~~~~~~~   76 (134)
                      +|.|||..+++++..++....+.. ++|+|||+++++++.|+.+++||+.+.+.... .+   .+|.+.+.+..|+|||+
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~-v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~  121 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK  121 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTT
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeE-EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCC
Confidence            478999999999999996655555 99999999999999999999999988654321 11   23445566667788999


Q ss_pred             EE-EEeeCCCcEEEEecCCCceeEEEec------------CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          77 RL-ISCAEDKTVRLWDVSASAEVQKLEF------------GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l-~~~~~d~~i~~~d~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +| ++++.++.+.+||..+++....+..            ......+.++|++..++.+  .++.|.+||..
T Consensus       122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            86 6778899999999999998877652            2334578899999876654  46899999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.5e-21  Score=114.06  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=92.8

Q ss_pred             eeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC--eEEeCCCCCEeEEEEeeCC-CEEEEeeCCCcEE
Q psy6446          12 ELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP--TVYRGHSSGIKHVQFFKNN-TRLISCAEDKTVR   88 (134)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~   88 (134)
                      .+...+++...+++++|+|++++|++|+.||.|++||++......  ....+|.++|.+++|+|++ ..+++++.|+.++
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            344445666667779999999999999999999999997754322  2234699999999999964 5788999999999


Q ss_pred             EEecCCCceeEEEec--CCCCeEEEEccCCcEEEE-ecCCeEEEEeCC
Q psy6446          89 LWDVSASAEVQKLEF--GAVPNSLEISRDGTTITV-THGSCVTFLDAN  133 (134)
Q Consensus        89 ~~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~~~i~i~d~~  133 (134)
                      +|+............  ........+.+++..+++ +.++.+.+||++
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeecc
Confidence            999988777666553  233344555666666665 578999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-19  Score=107.26  Aligned_cols=127  Identities=23%  Similarity=0.382  Sum_probs=98.6

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||....+.+..+..+....  ..+.+++..+++++.||.|++||++.... ...+.+|...+.+++++  ++++++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s  232 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELK--DNILVS  232 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEE--TTEEEE
T ss_pred             eEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeeccccee-eeEecccccceeEEecC--CCEEEE
Confidence            47899998888888877544433  44555789999999999999999988654 45678898888887765  579999


Q ss_pred             eeCCCcEEEEecCCCceeEEEec----CCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKLEF----GAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ++.|+.|++||....+....+..    ...+.++.+  ++.+++++ .||.|++||+++
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTT
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCC
Confidence            99999999999999888777753    233444444  55677765 789999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.3e-19  Score=106.33  Aligned_cols=129  Identities=8%  Similarity=0.066  Sum_probs=98.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC-eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK-NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +.+|+..+++.+..++.....   .+++++++.+++++.++ .+++|++............|.+.+.+++|+|++++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  179 (287)
T d1pgua2         103 LLILQSFTGDIIKSVRLNSPG---SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA  179 (287)
T ss_dssp             EEEEETTTCCEEEEEECSSCE---EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             ceeeeccceeeeeecccccee---eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc
Confidence            467888888887777654432   45677788888777765 79999987644332223457788999999999999999


Q ss_pred             eeCCCcEEEEecCCCceeEEE--ecCCCCeEEEEccCC----------cEEEEe-cCCeEEEEeCC
Q psy6446          81 CAEDKTVRLWDVSASAEVQKL--EFGAVPNSLEISRDG----------TTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~~~~~~~--~~~~~v~~~~~~~~~----------~~l~~~-~~~~i~i~d~~  133 (134)
                      ++.|+.|++||+.+++.....  .+...+.+++|+|.+          .+++++ .|+.|++||++
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            999999999999988765432  256789999998754          467765 68999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=6.5e-20  Score=111.26  Aligned_cols=130  Identities=10%  Similarity=0.024  Sum_probs=106.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC   81 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (134)
                      |++||+.+++......+...+.. ++|+|++++|++++.++.+++|++.+... ...+..|...+.+++|+|++++|+.+
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFA-MGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEE-EEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEe-eeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeee
Confidence            78999998877655445555555 99999999999999999999999988654 45677888899999999999999854


Q ss_pred             e----------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          82 A----------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        82 ~----------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .          .++.+++||..+++......+...+..+.|+|+|+.|+.+ .++.+.+||..
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            3          3456899999988776666667778899999999988865 67888888853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-18  Score=102.66  Aligned_cols=124  Identities=20%  Similarity=0.355  Sum_probs=96.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +|++||+.+++++..+......+..+.+  ++..+++++.|+.+++||+++... .....++...+..  +.+++.+|++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE--EECCSSEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEeccccee-eeeecccceeeee--ccccceEEEE
Confidence            3789999999999998866555544555  467899999999999999998654 3456777777764  4568899999


Q ss_pred             eeCCCcEEEEecCCC---------ceeEEEe-cCCCCeEEEEccCCcEEEEe-cCCeEEEEe
Q psy6446          81 CAEDKTVRLWDVSAS---------AEVQKLE-FGAVPNSLEISRDGTTITVT-HGSCVTFLD  131 (134)
Q Consensus        81 ~~~d~~i~~~d~~~~---------~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d  131 (134)
                      ++.||.|++||+...         .++..+. |...|.+++|+  +.+|+++ .||.|++||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999999997542         2344444 67789999985  4566665 689999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=7.2e-19  Score=109.70  Aligned_cols=131  Identities=11%  Similarity=-0.022  Sum_probs=97.0

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCe-EE---eCCCCCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPT-VY---RGHSSGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~---~~~~~~v~~~~~~~~~~   76 (134)
                      +|++||+.+++.+..++.+..+.. ++|+|||+++++++.|+.+++||+.+++.... .+   .+|.+.+.+++|+|||+
T Consensus        43 ~v~vwD~~t~~~~~~l~~g~~~~~-vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~  121 (426)
T d1hzua2          43 QIALVDGDSKKIVKVIDTGYAVHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR  121 (426)
T ss_dssp             EEEEEETTTCSEEEEEECCSSEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTT
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeE-EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCC
Confidence            489999999999999996666555 99999999999999999999999998764321 11   24555667777889999


Q ss_pred             EEE-EeeCCCcEEEEecCCCceeEEEec------------CCCCeEEEEccCCcEEEEe--cCCeEEEEeC
Q psy6446          77 RLI-SCAEDKTVRLWDVSASAEVQKLEF------------GAVPNSLEISRDGTTITVT--HGSCVTFLDA  132 (134)
Q Consensus        77 ~l~-~~~~d~~i~~~d~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~  132 (134)
                      +++ ++..++.+.+||..++........            ......+..++++..+...  ..+.+.+++.
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            875 455789999999999888776652            2233456677777665543  2356655543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-18  Score=100.42  Aligned_cols=109  Identities=20%  Similarity=0.362  Sum_probs=84.1

Q ss_pred             CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeE
Q psy6446          20 HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   99 (134)
                      ...+.|+  ++++++|++|+.||.|++||+.+++. ...+.+|.+.|.+++|  ++++|++++.|+.+++|++..+....
T Consensus        15 ~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~-~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          15 SKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLEC-KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             CCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCE-EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCEeeeec--ccceeecccccccccccccccccccc
Confidence            3444444  55899999999999999999988654 4678899999998877  67899999999999999999988777


Q ss_pred             EEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446         100 KLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus       100 ~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ..............+.+..+....++.+.+||..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA  123 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred             cccccccccccccccccceeecccccceeEeecc
Confidence            6665444443333334444445678999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=2.1e-17  Score=97.95  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=106.7

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (134)
                      +|.+||+.+++.++.++....+.. ++|+|+|++|+ +++.++.|++||+.++... ..+..+ ..+..+.+++++..++
T Consensus        13 ~v~v~D~~t~~~~~~i~~g~~p~~-va~spdG~~l~v~~~~~~~i~v~d~~t~~~~-~~~~~~-~~~~~~~~~~~~~~~~   89 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVI-ATVPAG-SSPQGVAVSPDGKQVY   89 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEE-EEEECS-SSEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCceE-EEEeCCCCEEEEEECCCCEEEEEECCCCcee-eeeecc-cccccccccccccccc
Confidence            489999999999999987666666 99999999874 6678899999999886543 344544 4578999999998765


Q ss_pred             -EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCCC
Q psy6446          80 -SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus        80 -~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                       ++..++.+.+|+..+++....+.......++.++|++..++.+  .++.+.+|+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~  147 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence             4556778999999999999988888888999999999887654  468899998753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=8.6e-19  Score=104.98  Aligned_cols=128  Identities=8%  Similarity=0.097  Sum_probs=94.0

Q ss_pred             CeeEeecCCCceeeEEe----eCCCceeeEEE-ccCCcEEEEecCCCeEEEEECCCCCCCC--------------eEEeC
Q psy6446           1 MGTVWDAVSGEELHSFQ----HPHIVKSSVHF-ATDSYRLATGSNDKNIRIYDLNKPDAEP--------------TVYRG   61 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~l~~~~~d~~v~i~~~~~~~~~~--------------~~~~~   61 (134)
                      +|++||+...+......    ....... ..+ ..++..+++++.||.+.+|+........              ....+
T Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T d1yfqa_         171 QVQWFRLPLCEDDNGTIEESGLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN  249 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSCEEE-EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred             cEEEEecccCcccceeeeecccccceee-eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCc
Confidence            37889987766543322    2223333 444 4477889999999999999987533211              01234


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEE
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTF  129 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i  129 (134)
                      |...+.+++|+|++++|++|+.||.|++||+.+++.+..+........++|+|++.+++++ +|+.+++
T Consensus       250 ~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             ccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence            6668999999999999999999999999999999998888766677789999999988764 5554433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=5.3e-17  Score=97.45  Aligned_cols=131  Identities=13%  Similarity=0.037  Sum_probs=102.0

Q ss_pred             CeeEeecCCCceeeEEee--CCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCCCeEEeCCC-----CCEeEEEEe
Q psy6446           1 MGTVWDAVSGEELHSFQH--PHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAEPTVYRGHS-----SGIKHVQFF   72 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~-----~~v~~~~~~   72 (134)
                      +|.|||+++++.+..+..  .......++|+|||+++ ++++.++.|.+||+.+++.. .....+.     ..+..++|+
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~-~~~~~~~~~~~~~~~~~v~~s   90 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-GRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-EEEECCBTTEEEECTTCEEEC
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecCCCcccccceeeEEEc
Confidence            478999999999999873  22333449999999987 46678999999999986643 3333332     235679999


Q ss_pred             eCCCEEEEee------------CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          73 KNNTRLISCA------------EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        73 ~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      |++++++.+.            .+..+.+||..+++....+.....+..++|+|+|++++++. +.+.+||..
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~  162 (337)
T d1pbyb_          91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMDPE  162 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEEETT
T ss_pred             CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcceeeee
Confidence            9999988765            35678999999999999888888899999999999888764 346677764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.9e-16  Score=93.23  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             CeeEeecCCCc---eeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCCCCeE--EeCCCCCEeEEEEeeC
Q psy6446           1 MGTVWDAVSGE---ELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDAEPTV--YRGHSSGIKHVQFFKN   74 (134)
Q Consensus         1 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~   74 (134)
                      +|++||+.+..   .++.+++...+.. ++|+|||++|+++ ..|+.|++|++.........  ...+...+..++|+||
T Consensus        15 ~I~v~~~~~~~~l~~~~~~~~~~~v~~-la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD   93 (333)
T d1ri6a_          15 QIHVWNLNHEGALTLTQVVDVPGQVQP-MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ   93 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCCCC-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT
T ss_pred             cEEEEEEcCCCCeEEEEEEcCCCCEeE-EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC
Confidence            48999987543   3445566666666 9999999998554 55899999999865433222  2234456788999999


Q ss_pred             CCEEEEeeC-CCcEEEEecCCCceeEEEe---cCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          75 NTRLISCAE-DKTVRLWDVSASAEVQKLE---FGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~-d~~i~~~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++++++++. ++.+.+|+...........   +...+.++.++|++++++.+  .+..|.+|+..
T Consensus        94 g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence            999988875 6689999887665544433   35667889999999987765  35788888864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.3e-15  Score=91.33  Aligned_cols=128  Identities=16%  Similarity=0.184  Sum_probs=95.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCC--------------------------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAE--------------------------   55 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--------------------------   55 (134)
                      +.+||..+++.+..+.....+.. ++|+|+|+++++++.+  +.+||..++...                          
T Consensus       117 ~~~~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         117 VALYDAETLSRRKAFEAPRQITM-LAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             EEEEETTTTEEEEEEECCSSCCC-EEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             eeeccccCCeEEEeccccCCceE-EEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence            56899999999988887666665 9999999999998754  566776532100                          


Q ss_pred             ---------------------------------------CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCc
Q psy6446          56 ---------------------------------------PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASA   96 (134)
Q Consensus        56 ---------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   96 (134)
                                                             ......+...+..+.++|++.+++..  ++.+.+||+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence                                                   00011223344555666666666544  4789999999999


Q ss_pred             eeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          97 EVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        97 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+..+.....+.+++|+|||++++++ .+++|.+||+++
T Consensus       272 ~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         272 SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            99999988889999999999988876 689999999874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.72  E-value=1.4e-15  Score=90.03  Aligned_cols=130  Identities=13%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC-CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND-KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (134)
                      +.+|+..+++.+..+........ +.++|++..+++++.+ +.+.+++..... ..... .....+..+.++++++.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~v  216 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVGRSPKG-IAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTV-KVEAAPSGIAVNPEGTKAYV  216 (301)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEE-EEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE-ECSSEEEEEEECTTSSEEEE
T ss_pred             eeeeeccccceeeecccCCCceE-EEeeccccceeeeccccccccccccccee-eeecc-cccCCcceeecccccccccc
Confidence            57899999998888887666666 9999999888777655 566777766533 22233 34456788999999998775


Q ss_pred             ee---CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEE-Ee-cCCeEEEEeCCC
Q psy6446          81 CA---EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTIT-VT-HGSCVTFLDANS  134 (134)
Q Consensus        81 ~~---~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~d~~t  134 (134)
                      +.   .++.|.+||..+++....+.....+.+++|+|||++++ ++ .++.|.+||+++
T Consensus       217 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         217 TNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            54   34679999999999998888888889999999998764 44 579999999865

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=8e-17  Score=100.38  Aligned_cols=102  Identities=12%  Similarity=0.105  Sum_probs=78.5

Q ss_pred             CCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEE--EecC----
Q psy6446          31 DSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQK--LEFG----  104 (134)
Q Consensus        31 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~----  104 (134)
                      ...++++.+.||.|++||+.+++.. ..+..+ ..+..++|+|||+++++++.|+.+++||+.+++....  +...    
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~-~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~  108 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIV-KVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  108 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEE-EEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEE-EEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence            3335677889999999999997654 456655 4689999999999999999999999999998875543  3322    


Q ss_pred             CCCeEEEEccCCcEEEEe--cCCeEEEEeCCC
Q psy6446         105 AVPNSLEISRDGTTITVT--HGSCVTFLDANS  134 (134)
Q Consensus       105 ~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~t  134 (134)
                      ..+.+++|+|||++++++  .++.+.+||.++
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             ceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            234456677899987654  579999999763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=6.6e-16  Score=92.91  Aligned_cols=107  Identities=10%  Similarity=0.067  Sum_probs=84.7

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe-CCCCCEeEEEEeeCCCEEE-EeeCCCcEEEEecCCCceeEEEec
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR-GHSSGIKHVQFFKNNTRLI-SCAEDKTVRLWDVSASAEVQKLEF  103 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~  103 (134)
                      ++|+++++++++++.++.|.+||+.+++. ...+. .+...+..++|+||+++++ ++..++.|.+||+.+++....+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999998654 34444 4566788999999999875 556789999999999998887764


Q ss_pred             C-------CCCeEEEEccCCcEEEEe-------------cCCeEEEEeCC
Q psy6446         104 G-------AVPNSLEISRDGTTITVT-------------HGSCVTFLDAN  133 (134)
Q Consensus       104 ~-------~~v~~~~~~~~~~~l~~~-------------~~~~i~i~d~~  133 (134)
                      .       ..+..++|+|||++++++             .+..+.+||..
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~  130 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  130 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence            3       245789999999887654             24667777754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=1.2e-15  Score=91.71  Aligned_cols=131  Identities=8%  Similarity=-0.004  Sum_probs=98.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEE--------------------------EecCCCeEEEEECCCCCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLA--------------------------TGSNDKNIRIYDLNKPDAE   55 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------~~~~d~~v~i~~~~~~~~~   55 (134)
                      +.+||+.+++.+..+........ +.++|++..+.                          ++..++.+.+|++.++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         165 IYKMDVKTGKYTVALPLRNWNRK-GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             EEEECTTTCCEEEEECSTTCCCT-TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             ceEEEccCCCEEEEEecCCCccc-eEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence            46788888888888775444444 55566554432                          2233445777887776544


Q ss_pred             CeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          56 PTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      ......+...+....+++++..++.... +.+.+||..+++.+..+.....+.+++|+|||++++++ .++.|++||++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            4455677888899999998888776554 57999999999999988888889999999999988876 689999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=1.6e-14  Score=90.27  Aligned_cols=100  Identities=12%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             cEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCcee--EEEecCC----C
Q psy6446          33 YRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEV--QKLEFGA----V  106 (134)
Q Consensus        33 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~----~  106 (134)
                      -++++.+.+|.|.+||..+++.. ..+..+ ..+..++|+|||+++++++.|+.+.+||+.+++..  ..+....    .
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~-~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIK-TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEE-EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE-EEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            34588899999999999987655 445555 46999999999999999999999999999887643  3444332    2


Q ss_pred             CeEEEEccCCcEEEE-e-cCCeEEEEeCCC
Q psy6446         107 PNSLEISRDGTTITV-T-HGSCVTFLDANS  134 (134)
Q Consensus       107 v~~~~~~~~~~~l~~-~-~~~~i~i~d~~t  134 (134)
                      +.+..|+|||+++++ + .++.|.+||.++
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            344456789998754 4 579999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.4e-13  Score=82.45  Aligned_cols=100  Identities=10%  Similarity=0.127  Sum_probs=74.4

Q ss_pred             EEEEecCCCeEEEEECCCCCCCC-eEEeCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCceeEE----EecCCCC
Q psy6446          34 RLATGSNDKNIRIYDLNKPDAEP-TVYRGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAEVQK----LEFGAVP  107 (134)
Q Consensus        34 ~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~----~~~~~~v  107 (134)
                      .+++++.++.|++|+++...... .....|.+.+..++|+|||++|++++ .|+.|.+|++........    ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45777889999999998644321 12236788999999999999996555 589999999976543322    2345667


Q ss_pred             eEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         108 NSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       108 ~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ..++|+|||++++++  .++.+.+|+..
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccc
Confidence            899999999988875  35788888753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=1.6e-13  Score=86.22  Aligned_cols=119  Identities=14%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             CeeEeecCCCceeeEEeeC-----CCceeeEEEccCCcEEEEecC---------CCeEEEEECCCCCCCCeEEeCCCCCE
Q psy6446           1 MGTVWDAVSGEELHSFQHP-----HIVKSSVHFATDSYRLATGSN---------DKNIRIYDLNKPDAEPTVYRGHSSGI   66 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~v   66 (134)
                      .+.+||+.+++....+...     ...+.++.|+|||++|+.++.         ++.+.+||+.++..  ..+..+...+
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~--~~l~~~~~~~  114 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL--ITEERIPNNT  114 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE--CCSSCCCTTE
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc--cccccCCccc
Confidence            3789999999987666522     233445999999999988743         56789999998653  2356788899


Q ss_pred             eEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-------------------CCCCeEEEEccCCcEEEEe
Q psy6446          67 KHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-------------------GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~  122 (134)
                      ..+.|+|||+.++.. .++.+.+|+..+++..+....                   ......+.|+|||+.++..
T Consensus       115 ~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         115 QWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             EEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            999999999999985 466899999988876543321                   1234668899999998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.45  E-value=1.9e-11  Score=74.29  Aligned_cols=126  Identities=17%  Similarity=0.045  Sum_probs=90.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeCCCCC------
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRGHSSG------   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~~~------   65 (134)
                      |.+||..+++.+..+...... . +.|+|||++|++++          .++.|.+||..+++.. .....+...      
T Consensus        49 v~v~D~~tg~~~~~~~~~~~~-~-~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~-~~~~~~~~~~~~~~~  125 (373)
T d2madh_          49 QWVLDAGSGSILGHVNGGFLP-N-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEECCCCCEEEEEeCCCCc-c-EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE-EEEecCCcceeEecc
Confidence            679999999999988744332 4 99999999998864          4578999999986543 233333322      


Q ss_pred             -EeEEEEeeCCCEEEEee--CCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE--ecCCeEEEEeCC
Q psy6446          66 -IKHVQFFKNNTRLISCA--EDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV--THGSCVTFLDAN  133 (134)
Q Consensus        66 -v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~~i~i~d~~  133 (134)
                       ...+.|+++++.++...  .++.+.+|+....+.....   ....++.++|+++.++.  +.|+.+.+||..
T Consensus       126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence             35678899988766543  4567888988776654433   34568889999975543  468999999864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=7.8e-12  Score=75.40  Aligned_cols=99  Identities=13%  Similarity=0.064  Sum_probs=72.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeCC-------C
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRGH-------S   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~-------~   63 (134)
                      +|.+||..+++.+.++...... . ++|+|||+.|++.+          .++.|++||+.+++... ....+       .
T Consensus        29 ~v~v~D~~tg~~~~~~~~g~~~-~-~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~-~~~~~~~~~~~~~  105 (355)
T d2bbkh_          29 QQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA-DIELPDAPRFLVG  105 (355)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE-EEEETTCCCCCBS
T ss_pred             eEEEEECCCCcEEEEEECCCCC-c-eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE-EEecCCcceeecC
Confidence            3789999999999988743332 4 99999999887643          47899999998865432 22221       2


Q ss_pred             CCEeEEEEeeCCCEEEEee--CCCcEEEEecCCCceeEEEe
Q psy6446          64 SGIKHVQFFKNNTRLISCA--EDKTVRLWDVSASAEVQKLE  102 (134)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~  102 (134)
                      .....+.|+|++++++...  .+..+.+|+..+++....+.
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence            2346789999999887654  45679999998887766554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=5.4e-13  Score=83.77  Aligned_cols=105  Identities=8%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE-----eCCCCCEeEEEEeeCCCEEEEeeC---------CCcEEEEe
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY-----RGHSSGIKHVQFFKNNTRLISCAE---------DKTVRLWD   91 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d   91 (134)
                      +.|.++++++..  .++.+.+||+.+++.. ..+     ..|...+.++.|+||+++|+.++.         ++.+.+||
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEE-EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEE-EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            889999887764  4678999999987643 222     344577999999999999987653         45788999


Q ss_pred             cCCCceeEEEecCCCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          92 VSASAEVQKLEFGAVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        92 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +.+++......+...+..+.|+|||+.++...++.+.+|+..
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~  140 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECC
Confidence            998876554446777899999999999999888999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=4.5e-12  Score=77.29  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             EEEeeCCCEEEEeeCC---------CcEEEEecCCCceeEEEecCCCCeEEEEccCCc-EEE-Ee-cCCeEEEEeCCC
Q psy6446          69 VQFFKNNTRLISCAED---------KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TIT-VT-HGSCVTFLDANS  134 (134)
Q Consensus        69 ~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~-~~~~i~i~d~~t  134 (134)
                      +++++++..++....+         ..+.+||..+++.+..+.....+..++|+|||+ +++ ++ .++.|++||..+
T Consensus       269 ~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            5556666555433211         248889999998888777777788999999996 444 33 579999999864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.31  E-value=8.8e-10  Score=66.78  Aligned_cols=132  Identities=12%  Similarity=0.154  Sum_probs=85.1

Q ss_pred             eeEeecCCCceeeEEee------CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEeC----------CCC
Q psy6446           2 GTVWDAVSGEELHSFQH------PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYRG----------HSS   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~----------~~~   64 (134)
                      +.+||..+++.......      .........+.+++. ++..+.++.+.+|+........ .....          ...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (373)
T d2madh_         189 LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG  267 (373)
T ss_pred             EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC
Confidence            56788887776655431      111122244555554 4455677888998877643111 01111          122


Q ss_pred             CEeEEEEeeCCCEEE----------EeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEE--EEe-cCCeEEEEe
Q psy6446          65 GIKHVQFFKNNTRLI----------SCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI--TVT-HGSCVTFLD  131 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~----------~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~-~~~~i~i~d  131 (134)
                      ....+++++++..++          ....++.+.+||..+++.+..+.....+..++|+|||+.+  +++ .++.|++||
T Consensus       268 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             cceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            334556666665543          4455678999999999999999888889999999999743  344 679999999


Q ss_pred             CCC
Q psy6446         132 ANS  134 (134)
Q Consensus       132 ~~t  134 (134)
                      +++
T Consensus       348 ~~t  350 (373)
T d2madh_         348 AGA  350 (373)
T ss_pred             CCC
Confidence            875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=3.5e-11  Score=73.30  Aligned_cols=100  Identities=10%  Similarity=-0.035  Sum_probs=75.0

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEec----------CCCeEEEEECCCCCCCCeEEeCCC-------C
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGS----------NDKNIRIYDLNKPDAEPTVYRGHS-------S   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~-------~   64 (134)
                      +.++|..+++.+..+...... . ++|+|||+.|++.+          .|+.|.+||..+.+... ....+.       .
T Consensus        48 ~~~~d~~~~~~~~~~~~~~~~-~-~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~-~i~~p~~~~~~~g~  124 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGAFLS-L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC-E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE-EEEETTSCSCCBSC
T ss_pred             EEEEeCCCCcEEEEEeCCCCC-c-ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEee-eecCCccceecccC
Confidence            567899999999888754433 4 89999999988753          46789999998865432 222221       2


Q ss_pred             CEeEEEEeeCCCEEEEee-CCCcEEEEecCCCceeEEEecC
Q psy6446          65 GIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAEVQKLEFG  104 (134)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~  104 (134)
                      ....++|+||+++++.+. .++.+.+||+.+++....+...
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence            235689999999998765 5789999999999988877643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=1.1e-11  Score=74.65  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=79.0

Q ss_pred             EEEccCCcEEEEecCCCeEEEEECCCCCCCC-eEEeCC----------CCCEeEEEEeeCCCEEEEeeCC----------
Q psy6446          26 VHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TVYRGH----------SSGIKHVQFFKNNTRLISCAED----------   84 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------   84 (134)
                      ..+.+++..++.++.++.+++|++..+.... .....+          ......+++++++..++....+          
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence            5666677778888889999999988754211 111111          1233558888988887654432          


Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCc-EE-EEe-cCCeEEEEeCCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT-TI-TVT-HGSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l-~~~-~~~~i~i~d~~t  134 (134)
                      ..+.+||..+++.+..+.....+.+++|+|||+ ++ +++ .++.|.+||+++
T Consensus       280 ~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            369999999999998888777789999999997 33 344 579999999875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=5.4e-09  Score=65.05  Aligned_cols=130  Identities=9%  Similarity=-0.050  Sum_probs=87.4

Q ss_pred             eeEeecCCCceeeEEee-CCCceeeEEEccCCcEE--EEecCCC-----------------eEEEEECCCCCCCCeEEeC
Q psy6446           2 GTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRL--ATGSNDK-----------------NIRIYDLNKPDAEPTVYRG   61 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l--~~~~~d~-----------------~v~i~~~~~~~~~~~~~~~   61 (134)
                      |.++|+.+++....++- .......++|+|+++.+  +..+.+.                 .+..+|..+.....+..  
T Consensus        96 VavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~--  173 (441)
T d1qnia2          96 VARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI--  173 (441)
T ss_dssp             EEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE--
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe--
Confidence            67899999998887762 23344449999999853  3333322                 23446666544332222  


Q ss_pred             CCCCEeEEEEeeCCCEEEEeeCC-----------------------------------------CcEEEEecCCCceeEE
Q psy6446          62 HSSGIKHVQFFKNNTRLISCAED-----------------------------------------KTVRLWDVSASAEVQK  100 (134)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~d-----------------------------------------~~i~~~d~~~~~~~~~  100 (134)
                      -.+....+.++|+++++++.+.+                                         +.+.+++....+....
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            23457889999999998866543                                         2334444444556666


Q ss_pred             EecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         101 LEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       101 ~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ++.+.....+.++|||++++++  .+++|.+||++
T Consensus       254 IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         254 IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             ECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             EeCCCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            6666677899999999998765  47999999985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=3.9e-08  Score=58.32  Aligned_cols=123  Identities=11%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             cCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCc
Q psy6446           7 AVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKT   86 (134)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   86 (134)
                      +...+.+..+.....+-. ++++|||+++++...++.|..++....   ...+....+.+..++|.++++.+++...++.
T Consensus        15 ~~~~~v~~~~p~~~~~e~-iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          15 LAPAKIITSFPVNTFLEN-LASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CCCEEEEEEECTTCCEEE-EEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcccEEEECCCCCCcCC-EEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            344455555653333444 999999999999999999988886542   2344556678999999999998888888888


Q ss_pred             EEEEecCCCc--eeEEEe--cCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446          87 VRLWDVSASA--EVQKLE--FGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus        87 i~~~d~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      +..++.....  ......  .......+.+.++++++++. .++.+..+|..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence            8877765432  222222  23456889999999887765 46777777754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=1.6e-07  Score=55.05  Aligned_cols=122  Identities=12%  Similarity=0.137  Sum_probs=85.3

Q ss_pred             CCceeeEEee--CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE--eCCCCCEeEEEEeeCCCEEEEeeC-
Q psy6446           9 SGEELHSFQH--PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY--RGHSSGIKHVQFFKNNTRLISCAE-   83 (134)
Q Consensus         9 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-   83 (134)
                      +++.+..+..  .......+++.++++.+++....+.|++|+... +. ...+  .+.......+++.++++.+++-.. 
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~  220 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGEILIADNHN  220 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ce-eeeecccccccCCcccccccCCeEEEEECCC
Confidence            3555555541  222333488889998888888889999999764 22 2222  123455789999999997776543 


Q ss_pred             CCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          84 DKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        84 d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      ++.|.+++ .+++.+..+...   .....+++.|+|.++++..++.|++|...
T Consensus       221 ~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         221 NFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             SCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             CcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence            45799998 467777666532   35688999999988777778999999764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.94  E-value=4.2e-08  Score=61.04  Aligned_cols=122  Identities=14%  Similarity=0.012  Sum_probs=86.6

Q ss_pred             CeeEeecCCCceeeEEee--C----------------------------CCceeeEEEccCCcEEEEe-cCCCeEEEEEC
Q psy6446           1 MGTVWDAVSGEELHSFQH--P----------------------------HIVKSSVHFATDSYRLATG-SNDKNIRIYDL   49 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~--~----------------------------~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~   49 (134)
                      +|++||+.+++.++.+.-  +                            ....+....+|||++|++. ..++.|.++|+
T Consensus        22 ~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl  101 (441)
T d1qnia2          22 EVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRL  101 (441)
T ss_dssp             CEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEET
T ss_pred             cEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEEC
Confidence            478999999998887641  0                            1222324456899988665 56789999999


Q ss_pred             CCCCCCCeEEeCCCCCEeEEEEeeCCCE--EEEeeCCC-----------------cEEEEecCCCceeEEEecCCCCeEE
Q psy6446          50 NKPDAEPTVYRGHSSGIKHVQFFKNNTR--LISCAEDK-----------------TVRLWDVSASAEVQKLEFGAVPNSL  110 (134)
Q Consensus        50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~~~d~~~~~~~~~~~~~~~v~~~  110 (134)
                      ++.+........+...+..++|+|+++.  ++..+++.                 .+..+|..+.+...++........+
T Consensus       102 ~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v  181 (441)
T d1qnia2         102 DIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNT  181 (441)
T ss_dssp             TTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCE
T ss_pred             CCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccce
Confidence            9865433222345678999999999884  44333332                 2355788888888888878888999


Q ss_pred             EEccCCcEEEEe
Q psy6446         111 EISRDGTTITVT  122 (134)
Q Consensus       111 ~~~~~~~~l~~~  122 (134)
                      .++|+|++++++
T Consensus       182 ~~spdGk~a~vt  193 (441)
T d1qnia2         182 DADYTGKYATST  193 (441)
T ss_dssp             EECSSSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999999988765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.84  E-value=8.8e-07  Score=53.86  Aligned_cols=113  Identities=8%  Similarity=0.063  Sum_probs=73.0

Q ss_pred             CCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCCCCCeEEe------------------CCCCCEeEEEEeeCCCEEEE
Q psy6446          20 HIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPDAEPTVYR------------------GHSSGIKHVQFFKNNTRLIS   80 (134)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~   80 (134)
                      ..... +.|+|+++++.+. -.++.|.+|+++..........                  .+......+.++|++++|++
T Consensus       193 ~gPr~-i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         193 DHPRW-VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             CCEEE-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CceEE-EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            34455 9999999988655 4578999999876442211100                  11123567899999999987


Q ss_pred             eeC-C-----CcEEEEecCCCceeEEE---e----cCCCCeEEEEcc-CCcEEEEe--cCCeEEEEeCC
Q psy6446          81 CAE-D-----KTVRLWDVSASAEVQKL---E----FGAVPNSLEISR-DGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        81 ~~~-d-----~~i~~~d~~~~~~~~~~---~----~~~~v~~~~~~~-~~~~l~~~--~~~~i~i~d~~  133 (134)
                      +.+ +     ..|..|++.....+...   .    .......++++| +|++|+++  .++.|.+|++.
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            643 2     23777776543222211   1    234567899998 78988776  46999999753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.6e-08  Score=60.73  Aligned_cols=120  Identities=8%  Similarity=0.059  Sum_probs=78.1

Q ss_pred             eeEeecCCCceeeEEee---CCCceeeEEEccCCcEEEEec---------CCCeEEEEECCCCCCCC-eEEeCCCCCEeE
Q psy6446           2 GTVWDAVSGEELHSFQH---PHIVKSSVHFATDSYRLATGS---------NDKNIRIYDLNKPDAEP-TVYRGHSSGIKH   68 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~---------~d~~v~i~~~~~~~~~~-~~~~~~~~~v~~   68 (134)
                      |.+||+.+++....+..   .........|+||++.++...         ..+...++|+.++.... .........+..
T Consensus        39 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~  118 (465)
T d1xfda1          39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY  118 (465)
T ss_dssp             EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB
T ss_pred             EEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccce
Confidence            67889887776544442   112233378999999887753         35788999998765321 111122345667


Q ss_pred             EEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecC-------------------CCCeEEEEccCCcEEEEe
Q psy6446          69 VQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFG-------------------AVPNSLEISRDGTTITVT  122 (134)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~  122 (134)
                      ..|||||+.++-.. ++.+.+.+..++...+....+                   ..-..+-|||||+.|+..
T Consensus       119 ~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         119 AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            89999999988765 456788887766655444311                   112467799999998864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=1.9e-07  Score=54.02  Aligned_cols=91  Identities=9%  Similarity=-0.026  Sum_probs=58.5

Q ss_pred             eeeEEEccCCcEEEEecCC-CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC---CCcEEEEecCCCcee
Q psy6446          23 KSSVHFATDSYRLATGSND-KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE---DKTVRLWDVSASAEV   98 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~   98 (134)
                      .....|+|+++.++..+.+ +...+|......... .............|+|||+.|+..+.   ...+.++++..+...
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            3348899999988876554 333444333322222 33445566788899999999875443   236889998876655


Q ss_pred             EEEecCCCCeEEEEcc
Q psy6446          99 QKLEFGAVPNSLEISR  114 (134)
Q Consensus        99 ~~~~~~~~v~~~~~~~  114 (134)
                      ........+...+|+|
T Consensus       252 ~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSEEEEEEECC
T ss_pred             EEeCCCCcEEeEEeCC
Confidence            4444455667788987

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.58  E-value=8.9e-06  Score=48.40  Aligned_cols=108  Identities=15%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             EEEccCCc-----EEEEecCCCeEEEEECCCCCCCCe--EE---e-CCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCC
Q psy6446          26 VHFATDSY-----RLATGSNDKNIRIYDLNKPDAEPT--VY---R-GHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSA   94 (134)
Q Consensus        26 ~~~~~~~~-----~l~~~~~d~~v~i~~~~~~~~~~~--~~---~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   94 (134)
                      ++|+|++.     +.++-+..+.|..|++........  .+   . ......-.+++.++|+..++....+.|.+||...
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            88888664     445557788899888764332211  11   1 1123456789999999888888889999999888


Q ss_pred             CceeEEEecC-CCCeEEEEccCCcEEEE-e-cCCeEEEEeCC
Q psy6446          95 SAEVQKLEFG-AVPNSLEISRDGTTITV-T-HGSCVTFLDAN  133 (134)
Q Consensus        95 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~-~~~~i~i~d~~  133 (134)
                      ++....+..+ ..+.+++|.|+++.|.+ . .++.|..+++.
T Consensus       257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8777766653 56789999999875544 3 46888888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=4.1e-06  Score=50.86  Aligned_cols=100  Identities=5%  Similarity=0.006  Sum_probs=66.6

Q ss_pred             eeeEEEccCCcEEEEecC-CCeEEEEECCCCCCCCe--EE--eCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCc
Q psy6446          23 KSSVHFATDSYRLATGSN-DKNIRIYDLNKPDAEPT--VY--RGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASA   96 (134)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~   96 (134)
                      ..++.|+|+|+++++++. ...|.+|+.........  ..  .........+.|+|+++++.... .+++|.+|++...+
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            456999999998887754 45788887654332211  11  12346789999999999886555 57889999987654


Q ss_pred             eeEEEe-----c---------------CCCCeEEEEccCCcEEEEe
Q psy6446          97 EVQKLE-----F---------------GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        97 ~~~~~~-----~---------------~~~v~~~~~~~~~~~l~~~  122 (134)
                      ......     .               ......+.++|+|++++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            322211     1               0113468899999998765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=7.5e-06  Score=47.13  Aligned_cols=128  Identities=12%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCC---eEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDK---NIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.|.|...+......++...+.+ .+|||||+.|+......   .+.+.+.....  ...+..+........|+|+++.+
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~s-P~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEcCCCCCcEEEecCCCceee-eEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCee
Confidence            56778765555555567766666 99999999998764432   46666665543  34556677888999999999998


Q ss_pred             EEeeC-CCc--EEEEecCCCceeEEEecCCCCeEEEEccCCcEEEE-e-cCC--eEEEEeC
Q psy6446          79 ISCAE-DKT--VRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITV-T-HGS--CVTFLDA  132 (134)
Q Consensus        79 ~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~--~i~i~d~  132 (134)
                      +.... ++.  +..+.....................+++++..+.. + .++  .|...++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~  158 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  158 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeec
Confidence            86554 333  22332222222222222333345566666655443 2 233  4555443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=5.4e-06  Score=47.93  Aligned_cols=108  Identities=9%  Similarity=0.034  Sum_probs=72.9

Q ss_pred             eeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE-e
Q psy6446          24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL-E  102 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~  102 (134)
                      ..+++.++++.+++-.....+..++........ ....-......+++.++++.+++...++.|..+|.......... .
T Consensus       101 ~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~  179 (260)
T d1rwia_         101 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT  179 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS
T ss_pred             ccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeecc
Confidence            348899998887776666777777765432211 11112245678999999998888888888999987654333221 1


Q ss_pred             cCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446         103 FGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       103 ~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .......++++++|.++++. ..+.|..++.
T Consensus       180 ~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         180 DITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             ccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence            23456889999999887776 4578887765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.2e-05  Score=46.38  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=74.4

Q ss_pred             eEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec-
Q psy6446          25 SVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF-  103 (134)
Q Consensus        25 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-  103 (134)
                      .++++++++.+++...++.+..++.+..... ......-.....+++.++++.+++....+.|..++..... ...... 
T Consensus       144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~  221 (260)
T d1rwia_         144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFT  221 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCC
T ss_pred             eeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccC
Confidence            4889999998888888888999987753321 1112344567899999999888888788888888765432 222222 


Q ss_pred             -CCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446         104 -GAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus       104 -~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                       -.....++++++|.++++. .+++|..++.
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence             2456799999999877765 4678887764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=2.8e-06  Score=49.08  Aligned_cols=93  Identities=13%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             EEccC--CcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeC-C-----CcEEEEecCCCcee
Q psy6446          27 HFATD--SYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAE-D-----KTVRLWDVSASAEV   98 (134)
Q Consensus        27 ~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~~~~   98 (134)
                      ..+|+  |+.++..+ ++.|.+.|+..+..  ..+..+.+......|||||+.|+.... +     ..|.+.+..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35687  88887654 46788889987553  346667788899999999999885432 2     23777777776654


Q ss_pred             EEEec-------CCCCeEEEEccCCcEEEEe
Q psy6446          99 QKLEF-------GAVPNSLEISRDGTTITVT  122 (134)
Q Consensus        99 ~~~~~-------~~~v~~~~~~~~~~~l~~~  122 (134)
                      .....       ........|+|+|+.++..
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEE
Confidence            43221       1245678899999988764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.3e-06  Score=53.67  Aligned_cols=80  Identities=14%  Similarity=-0.018  Sum_probs=49.6

Q ss_pred             eeEeecCCCceeeEEe--eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCC--------------
Q psy6446           2 GTVWDAVSGEELHSFQ--HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSG--------------   65 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~--------------   65 (134)
                      +.+||+.+++......  .....+....|||+|+.++... ++.+.+.+...+.....+..+..+.              
T Consensus        93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1          93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence            4578888776543322  2222333388999999998875 5678888876644322222222111              


Q ss_pred             ---EeEEEEeeCCCEEEEee
Q psy6446          66 ---IKHVQFFKNNTRLISCA   82 (134)
Q Consensus        66 ---v~~~~~~~~~~~l~~~~   82 (134)
                         -..+.|||||++|+...
T Consensus       172 ~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         172 LKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceEEECCCCCeEEEEE
Confidence               24678999999998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.42  E-value=2.4e-05  Score=45.59  Aligned_cols=121  Identities=13%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             CCceeeEEee-CCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEE--eCCCCCEeEEEEeeCCCEEEEeeCCC
Q psy6446           9 SGEELHSFQH-PHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVY--RGHSSGIKHVQFFKNNTRLISCAEDK   85 (134)
Q Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~   85 (134)
                      .++....+.. .......+++.++++.+++....+.+.+++.+. . ....+  ..+......+++.++++.+++....+
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-c-eeecccccccccccceeeeccceeEEeeecccc
Confidence            3454544431 122233488888888888877778888887653 2 22222  23446678889999988888888888


Q ss_pred             cEEEEecCCCceeEEEec---CCCCeEEEEccCCcEEEEe-c-CCeEEEEeC
Q psy6446          86 TVRLWDVSASAEVQKLEF---GAVPNSLEISRDGTTITVT-H-GSCVTFLDA  132 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~-~~~i~i~d~  132 (134)
                      .|.+||. +++.+..+..   ......++++++|+.+++. . ++.|.+|+.
T Consensus       179 ~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         179 CVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            9999986 4566666643   2346789999999977764 3 457888874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=3e-05  Score=46.11  Aligned_cols=130  Identities=11%  Similarity=-0.018  Sum_probs=71.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC----CCeEEEEECCCCCCCCeEEeCC---CCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN----DKNIRIYDLNKPDAEPTVYRGH---SSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~---~~~v~~~~~~~~   74 (134)
                      |..||..+++....+.........++++++|+++++...    .+.+...+.....  ......+   ......+.+.++
T Consensus        63 I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~~  140 (319)
T d2dg1a1          63 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDSK  140 (319)
T ss_dssp             EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECTT
T ss_pred             EEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce--eeeeccCCCcccCCcceeEEec
Confidence            344454444433333322222344899999987776543    2334444444322  2222222   234778999999


Q ss_pred             CCEEEEeeC------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          75 NTRLISCAE------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        75 ~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      |+..++-..      .+.+..++............-...+.++|+|+++.|..+  ..+.|..||+.
T Consensus       141 G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         141 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEc
Confidence            987665332      123555554333322222223445789999999866554  46899999864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.38  E-value=3.4e-05  Score=45.45  Aligned_cols=130  Identities=15%  Similarity=0.085  Sum_probs=79.2

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CCCCCEeEEEEeeCCCEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GHSSGIKHVQFFKNNTRLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~   79 (134)
                      |..+|.. ++.......... ..+++|+++|+++++...++.+..++..........+.  ........+.+.++++.++
T Consensus        51 I~~i~p~-g~~~~~~~~~~~-~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v  128 (302)
T d2p4oa1          51 IVSITPD-GNQQIHATVEGK-VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT  128 (302)
T ss_dssp             EEEECTT-CCEEEEEECSSE-EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEE
T ss_pred             EEEEeCC-CCEEEEEcCCCC-cceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEe
Confidence            3344432 443333334444 44599999999988888888888887765433222222  2345688999999999888


Q ss_pred             EeeCCCcEEEEecCCCceeEEEec---------C--CCCeEEEEccCCcEEEEecCCeEEEEeCC
Q psy6446          80 SCAEDKTVRLWDVSASAEVQKLEF---------G--AVPNSLEISRDGTTITVTHGSCVTFLDAN  133 (134)
Q Consensus        80 ~~~~d~~i~~~d~~~~~~~~~~~~---------~--~~v~~~~~~~~~~~l~~~~~~~i~i~d~~  133 (134)
                      +-+.++.+..+|...+........         .  .....+.++.+..+++....+.|..++..
T Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         129 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred             eccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence            888888888888876654333321         1  12345555433222222356888887753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=3e-05  Score=44.65  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC----C--CeEEEEECCCCCCCCe-----EEeCCCCCEeEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN----D--KNIRIYDLNKPDAEPT-----VYRGHSSGIKHVQ   70 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d--~~v~i~~~~~~~~~~~-----~~~~~~~~v~~~~   70 (134)
                      |.++|+.+++......+...... ..|||||+.|+....    +  ..+.+++...+.....     .............
T Consensus        23 l~~~d~~~g~~~~Lt~~~~~~~~-p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~  101 (281)
T d1k32a2          23 LWEHDLKSGSTRKIVSNLGVINN-ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAG  101 (281)
T ss_dssp             EEEEETTTCCEEEEECSSSEEEE-EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEE
T ss_pred             EEEEECCCCCEEEEecCCCcccC-EEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccc
Confidence            45678888876654445555555 999999999886432    2  2466677665432110     0111122345566


Q ss_pred             EeeCCCEEEE
Q psy6446          71 FFKNNTRLIS   80 (134)
Q Consensus        71 ~~~~~~~l~~   80 (134)
                      |+|+++.++.
T Consensus       102 ~spdg~~l~~  111 (281)
T d1k32a2         102 FDPDGNLIIS  111 (281)
T ss_dssp             ECTTCCEEEE
T ss_pred             cCCCCCEEEE
Confidence            7777776654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.05  E-value=0.00024  Score=42.15  Aligned_cols=97  Identities=7%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             eeEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEE-------eCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCC
Q psy6446          24 SSVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVY-------RGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSAS   95 (134)
Q Consensus        24 ~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   95 (134)
                      +.++|+|+++.|+ +-+..+.|..|++..........       .......-.+++.++|+..++....+.|.++|. ++
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            3499999998664 44667899999987543222111       111233568999999998888888999999995 68


Q ss_pred             ceeEEEecC-------CCCeEEEEccCCcEEEE
Q psy6446          96 AEVQKLEFG-------AVPNSLEISRDGTTITV  121 (134)
Q Consensus        96 ~~~~~~~~~-------~~v~~~~~~~~~~~l~~  121 (134)
                      +.+..+..+       ..+.+++|.+++..++.
T Consensus       259 ~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         259 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            888877643       24679999988765543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.04  E-value=0.00024  Score=41.72  Aligned_cols=126  Identities=15%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCC-----CCCEeEEEEeeCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGH-----SSGIKHVQFFKNNT   76 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~   76 (134)
                      |..||..+++. ..+..+..+ .++++.++++++++. .+ .+..+|..+++..  .+...     ...++.+.+.|+|+
T Consensus        42 I~r~d~~~g~~-~~~~~~~~~-~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~--~l~~~~~~~~~~~~nd~~vd~~G~  115 (295)
T d2ghsa1          42 LHELHLASGRK-TVHALPFMG-SALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LHAELESDLPGNRSNDGRMHPSGA  115 (295)
T ss_dssp             EEEEETTTTEE-EEEECSSCE-EEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EEECSSTTCTTEEEEEEEECTTSC
T ss_pred             EEEEECCCCeE-EEEECCCCc-EEEEEecCCCEEEEE-eC-ccEEeecccceee--EEeeeecCCCcccceeeEECCCCC
Confidence            45566665543 334434433 448888888776654 44 5888998876522  22111     22478888999998


Q ss_pred             EEEEeeC----CCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446          77 RLISCAE----DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus        77 ~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ..++...    .+.-.+|.+..++.......-...+.++|++++..+..+  ..+.|..|++.
T Consensus       116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             EEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence            7765432    234566766666655544444556889999999866654  45889888763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.91  E-value=0.00047  Score=40.83  Aligned_cols=130  Identities=11%  Similarity=0.049  Sum_probs=72.6

Q ss_pred             eeEeecCCCceeeEEee-C---CCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEe--CC-CCCEeEEEEeeC
Q psy6446           2 GTVWDAVSGEELHSFQH-P---HIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYR--GH-SSGIKHVQFFKN   74 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~   74 (134)
                      |..||..+++....... .   ...-..+.|.++++.++++...+.+...+............  +. -...+.+.+.++
T Consensus        48 I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~  127 (314)
T d1pjxa_          48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE  127 (314)
T ss_dssp             EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT
T ss_pred             EEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC
Confidence            45566665554332221 1   11123399999999888887777788888765322111111  11 113578999999


Q ss_pred             CCEEEEeeC---------------CCcEEEEecCCCceeEEEecCCCCeEEEEccCCc----EEEEe--cCCeEEEEeC
Q psy6446          75 NTRLISCAE---------------DKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGT----TITVT--HGSCVTFLDA  132 (134)
Q Consensus        75 ~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~--~~~~i~i~d~  132 (134)
                      |+..++-..               .+.+..++. .++.......-...+.++|+|++.    .|..+  ..+.|..||+
T Consensus       128 G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             CCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence            988776322               223444443 233333333233447889988763    44443  4688888875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.0005  Score=40.35  Aligned_cols=116  Identities=12%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             EeecCCCceeeEEeeCCCceeeEEEccCCcEE-EEecCCCeEEEEECCCCCCC----CeEE---eCCCCCEeEEEEeeCC
Q psy6446           4 VWDAVSGEELHSFQHPHIVKSSVHFATDSYRL-ATGSNDKNIRIYDLNKPDAE----PTVY---RGHSSGIKHVQFFKNN   75 (134)
Q Consensus         4 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~----~~~~---~~~~~~v~~~~~~~~~   75 (134)
                      +|.+..++......... ..+.+.|+++++.+ ++-+..+.|..++++.....    ...+   .+..+....+++..+|
T Consensus       132 l~~~~~g~~~~~~~~~~-~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G  210 (295)
T d2ghsa1         132 IYHVAKGKVTKLFADIS-IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  210 (295)
T ss_dssp             EEEEETTEEEEEEEEES-SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             EeeecCCcEEEEeeccC-CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC
Confidence            44445555444433333 33449999988865 45566788998887542211    1111   2334567889998899


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeEEEecC-CCCeEEEEc-cCCcEEEE
Q psy6446          76 TRLISCAEDKTVRLWDVSASAEVQKLEFG-AVPNSLEIS-RDGTTITV  121 (134)
Q Consensus        76 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~~  121 (134)
                      +..++....+.|..||. +++.+..+..+ ..+++++|- |+.+.|.+
T Consensus       211 nlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         211 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             CEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            98888778889999994 68888888765 457899996 66655543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=0.0023  Score=39.58  Aligned_cols=131  Identities=17%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCC--------------------------------------Ce
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSND--------------------------------------KN   43 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------------------------------~~   43 (134)
                      +.+.|..+.+...++.-....-. +.++++|+++++.+.+                                      +.
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~-~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDN-CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCC-EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeCCChhc-cccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            45688888888888875555555 9999999999887643                                      12


Q ss_pred             EEEEECCCCC-CCCeEEeCCCCCEeEEEEeeCCCEEEEee-CCCcEEEEecCCCce------------eEEEecCCCCeE
Q psy6446          44 IRIYDLNKPD-AEPTVYRGHSSGIKHVQFFKNNTRLISCA-EDKTVRLWDVSASAE------------VQKLEFGAVPNS  109 (134)
Q Consensus        44 v~i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------------~~~~~~~~~v~~  109 (134)
                      +.+-|.+... .....+-.-......+.++|||++++.++ .+.++.++|++.-..            .......-....
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            3344443211 11111111223457889999999987655 588999999864211            111112334467


Q ss_pred             EEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         110 LEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       110 ~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      -+|+..|....+- -|.+|.-|++.
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cccCCCceEEEEeeccceEEEEecc
Confidence            7888887533333 58999999863

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.26  E-value=0.0024  Score=41.03  Aligned_cols=78  Identities=15%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~   80 (134)
                      |.-+|+.+|+.+.+.+....... -..+..+.++++|+.||.++.+|..+++.+-..-......-.-+.|..+|+ +++.
T Consensus       468 l~AiD~~TG~i~W~~~~~~p~~~-g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         468 LRAMDPVSGKVVWEHKEHLPLWA-GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCS-CCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEEcCCCCcEEeecCCCCCCcc-ceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            56689999999999886555544 233446778889999999999999998866543333222223366777885 4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.25  E-value=0.0072  Score=37.40  Aligned_cols=130  Identities=14%  Similarity=0.062  Sum_probs=78.5

Q ss_pred             eeEeecCCCceeeEEeeCC-CceeeEEEc--cCCcEEEEecCCC------------------eEEEEECCCCCCCCeEEe
Q psy6446           2 GTVWDAVSGEELHSFQHPH-IVKSSVHFA--TDSYRLATGSNDK------------------NIRIYDLNKPDAEPTVYR   60 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~~~d~------------------~v~i~~~~~~~~~~~~~~   60 (134)
                      |.+-|+.+.+..+.++.+. .....++..  |+..+++..+.+.                  .+.+.|..+.+...+.. 
T Consensus       112 VAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-  190 (459)
T d1fwxa2         112 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-  190 (459)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-
T ss_pred             EEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee-
Confidence            4567777777766555322 222324444  3455666655422                  35567777644332222 


Q ss_pred             CCCCCEeEEEEeeCCCEEEEeeCCC--------------------------------------cEEEEecCC---CceeE
Q psy6446          61 GHSSGIKHVQFFKNNTRLISCAEDK--------------------------------------TVRLWDVSA---SAEVQ   99 (134)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~~~d~~~---~~~~~   99 (134)
                       -.+....++++++|+++++.+.+.                                      .+.+-|.+.   ....+
T Consensus       191 -V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~  269 (459)
T d1fwxa2         191 -VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR  269 (459)
T ss_dssp             -ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEE
T ss_pred             -eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeE
Confidence             234567899999999988765331                                      123334332   12333


Q ss_pred             EEecCCCCeEEEEccCCcEEEEec--CCeEEEEeCC
Q psy6446         100 KLEFGAVPNSLEISRDGTTITVTH--GSCVTFLDAN  133 (134)
Q Consensus       100 ~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~d~~  133 (134)
                      .++.+.....+..+|||+++++++  +.++.++|++
T Consensus       270 yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         270 YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            445555678899999999998863  7999999985

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.20  E-value=0.007  Score=36.23  Aligned_cols=109  Identities=15%  Similarity=0.069  Sum_probs=69.4

Q ss_pred             EEEccCCcEEEEecCCC-----------eEEEEECCCCCCCC--eEEeCCCCCEeEEEEeeCCCEEEEeeCC-CcEEEEe
Q psy6446          26 VHFATDSYRLATGSNDK-----------NIRIYDLNKPDAEP--TVYRGHSSGIKHVQFFKNNTRLISCAED-KTVRLWD   91 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~d~-----------~v~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d   91 (134)
                      .....+|+.++.|+.+.           .+.+||..++.-..  .....+........+.++++.++.++.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            44445788888876421           36789998754221  1222333334456788899998888765 5799999


Q ss_pred             cCCCceeEEEe--cCCCCeEEEEccCCcEEEEec--C-----CeEEEEeCCC
Q psy6446          92 VSASAEVQKLE--FGAVPNSLEISRDGTTITVTH--G-----SCVTFLDANS  134 (134)
Q Consensus        92 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~-----~~i~i~d~~t  134 (134)
                      ..+......-.  ....-...+..+||++++.+.  +     ..+.+||..+
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            98766543221  122335677788999888753  1     3688998753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.0067  Score=35.76  Aligned_cols=90  Identities=10%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCC----CCEeEEEEeeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHS----SGIKHVQFFKNNT   76 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~   76 (134)
                      ++.++|+++.+.++.+.-.+.++. ..|-.+. .|+... +..|+-|++.....+...+.-|.    ..|-.-..+++.+
T Consensus        84 ~LQiFnletK~klks~~~~e~Vvf-WkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~k  160 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHTMTDDVTF-WKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK  160 (327)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCE-EEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSC
T ss_pred             eEEEEehhHhhhhceEEcCCCcEE-EEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCC
Confidence            368999999999999998888887 8887544 454443 35799999976555656665553    3566666677888


Q ss_pred             EEEEee---CC----CcEEEEecC
Q psy6446          77 RLISCA---ED----KTVRLWDVS   93 (134)
Q Consensus        77 ~l~~~~---~d----~~i~~~d~~   93 (134)
                      +++..+   .+    |.+.+|...
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEeEecCCCceeEEEEEEEec
Confidence            876332   22    456677654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.08  E-value=0.0034  Score=40.21  Aligned_cols=77  Identities=13%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~   79 (134)
                      +.-||+.+|+.+..++....... -...-.+.++++|+.||.++.+|..+++.+-..-......-.-+.|..+|+ +++
T Consensus       459 l~AiD~~tGk~~W~~~~~~p~~g-g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVSPWNG-GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCC-CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEeCCCCCceEeeecCCCCCCC-ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            56789999999999886554433 223346788889999999999999998865433222211112255566775 443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.98  E-value=0.017  Score=36.85  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=36.0

Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |.+.-+|+.+++.+.......+..+-.+.-.+.+++.+ .||.++.||.+|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~t  488 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCC
Confidence            46788899999999888876655444444445555554 689999999865

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.92  E-value=0.0037  Score=40.30  Aligned_cols=77  Identities=13%  Similarity=0.018  Sum_probs=51.9

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLI   79 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~   79 (134)
                      |.-||+.+|+.+........... -..+-.+.+++.|+.||.++.+|.++++.+-..-......-.-+.|..+|+ +++
T Consensus       455 l~A~D~~TG~~~W~~~~~~~~~g-g~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKMERFAVWG-GTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCS-BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEeCCCCceecccCCCCCCcc-ceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            56789999999988875555444 233345778889999999999999998866443322222223355666775 444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.91  E-value=0.0039  Score=39.99  Aligned_cols=78  Identities=8%  Similarity=-0.098  Sum_probs=52.5

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~   80 (134)
                      |.-+|+.+|+.+.+......... -...-.+.++++|+.|+.++.+|.++++.+-+.-.+....-.-+.|..+|+ +++.
T Consensus       446 l~AiD~~TG~~~W~~~~~~~~~~-g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         446 IRAFDLTTGKAKWTKWEKFAAWG-GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCS-BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEeccCCCceeeEcCCCCCCCc-ceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            56789999999998875554443 122224668888999999999999998866543333333333466666775 4443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.90  E-value=0.021  Score=36.61  Aligned_cols=50  Identities=10%  Similarity=0.031  Sum_probs=32.8

Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |.+.-+|+.+++.+.......+..+-.....+.+++.+ .|+.++-+|.+|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~t  494 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCC
Confidence            45778888889888877765444332233334444444 689999998765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.87  E-value=0.0075  Score=38.53  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCC-EEEE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNT-RLIS   80 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~   80 (134)
                      +.-+|+.+++.+..+........ -...-.+.+++.|+.||.++.+|..+++.+-..-......-.-+.+..+|+ +++.
T Consensus       440 l~A~D~~tGk~~W~~~~~~~~~g-g~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         440 LLAWDPVKQKAAWKVPYPTHWNG-GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCC-CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eEEEeCCCCeEeeeccCCCCCCC-ceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            56789999999998885554443 233335678889999999999999998866443322222222356666775 4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.75  E-value=0.005  Score=36.89  Aligned_cols=95  Identities=15%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             eeEeecCCCceee--EEe-eCCCceeeEEEccCCcEEEEecCC-CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELH--SFQ-HPHIVKSSVHFATDSYRLATGSND-KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      +.+||..+++-..  ... ..........+.++++.++.|+.+ ..+.+||..+..-...........-...+..+|++.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            4689998776432  222 222222336788899999988655 578999987643110000001112245666778998


Q ss_pred             EEEeeCC------CcEEEEecCCCc
Q psy6446          78 LISCAED------KTVRLWDVSASA   96 (134)
Q Consensus        78 l~~~~~d------~~i~~~d~~~~~   96 (134)
                      ++.++.+      ..+.+||..+.+
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeeccccccccccceeeeecCCCCc
Confidence            8887753      358899987654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.74  E-value=0.028  Score=36.04  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCC--eEEEEccCCc-E
Q psy6446          42 KNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVP--NSLEISRDGT-T  118 (134)
Q Consensus        42 ~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v--~~~~~~~~~~-~  118 (134)
                      |.+.-+|+.+++..-+...+  .++..-..+-.+..+++++.|+.++.+|..+|+.+..+.....+  .-+.+..+|+ |
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            45666666665533322211  22222223446778888999999999999999999999865443  2367778884 5


Q ss_pred             EEE
Q psy6446         119 ITV  121 (134)
Q Consensus       119 l~~  121 (134)
                      +++
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.71  E-value=0.022  Score=34.25  Aligned_cols=128  Identities=11%  Similarity=0.236  Sum_probs=74.1

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEc------cCCcEEEEecC--C--CeEEEEECCCCCCCCeEE-------eCCCC
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFA------TDSYRLATGSN--D--KNIRIYDLNKPDAEPTVY-------RGHSS   64 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--d--~~v~i~~~~~~~~~~~~~-------~~~~~   64 (134)
                      |++||+. |+.+..+.. +...+ +..-      ....-+++++.  +  ..+.+|.+.........+       ..-..
T Consensus        52 l~vYdL~-G~~l~~~~~-Gr~NN-VDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~  128 (353)
T d1h6la_          52 LAVYSLE-GKMLHSYHT-GKLNN-VDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAID  128 (353)
T ss_dssp             CEEEETT-CCEEEECCS-SCEEE-EEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSS
T ss_pred             EEEEcCC-CcEEEeccc-CCcCc-cccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccC
Confidence            6789985 888777652 22222 3322      22223445442  2  357777775322111111       11123


Q ss_pred             CEeEEEE--eeC-CC-EEEEeeCCCcEEEEecC---CC----ceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          65 GIKHVQF--FKN-NT-RLISCAEDKTVRLWDVS---AS----AEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        65 ~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .+..+++  ++. +. +++....+|.+..|.+.   .+    +.++.+.....+..+.+++....|.++ .+..|+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4677777  443 44 45566778888888763   22    345566677889999999988888877 5566766664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.68  E-value=0.023  Score=33.96  Aligned_cols=94  Identities=7%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             CCCeEEEEECCCCCCCCeEEe----CCCCCEeEEEEeeCCCEEEEeeC---------------CCcEEEEecCCCceeEE
Q psy6446          40 NDKNIRIYDLNKPDAEPTVYR----GHSSGIKHVQFFKNNTRLISCAE---------------DKTVRLWDVSASAEVQK  100 (134)
Q Consensus        40 ~d~~v~i~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~  100 (134)
                      ....|.++++...........    ..-...+++.+..++.+++|-..               -+.-.+|....++....
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            345777777765332211111    12245789999999988887321               12334444444443333


Q ss_pred             EecCCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         101 LEFGAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       101 ~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ...-...+.++++|+++++.++  ..++|+.|++.
T Consensus       202 ~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         202 AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            3334567899999999887765  46899999874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.35  E-value=0.045  Score=33.54  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             eEEEccCCcEEEEe-----cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCC---------------
Q psy6446          25 SVHFATDSYRLATG-----SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAED---------------   84 (134)
Q Consensus        25 ~~~~~~~~~~l~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------   84 (134)
                      ...++|++++++.+     +....++++|+.+++.....+..  .....+.|.+|++.|+....+               
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            36789999998753     22347999999987643322221  123568899999987654322               


Q ss_pred             -CcEEEEecCCCceeE--EEec-C--CCCeEEEEccCCcEEEE
Q psy6446          85 -KTVRLWDVSASAEVQ--KLEF-G--AVPNSLEISRDGTTITV  121 (134)
Q Consensus        85 -~~i~~~d~~~~~~~~--~~~~-~--~~v~~~~~~~~~~~l~~  121 (134)
                       ..+..+.+.+.....  .+.. .  ..+..+..++++++++.
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence             257777776654332  2222 1  23456778899988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.24  E-value=0.065  Score=34.26  Aligned_cols=49  Identities=14%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             cEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          86 TVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        86 ~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      .+.-+|..+++.+.......+...-..+-.+.+++++ .|+.++.+|.+|
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~T  507 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCC
Confidence            5777888888888887765554433344456666655 689999999875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.13  Score=30.31  Aligned_cols=88  Identities=10%  Similarity=0.115  Sum_probs=63.3

Q ss_pred             CCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEecCCCCeEEEEccCCcEE
Q psy6446          40 NDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTI  119 (134)
Q Consensus        40 ~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l  119 (134)
                      ...++.+.|+..+..+.+..-    ..-+.-.+|..+.|+.-+ ...+.+||+++.+.++......+|.--+|-.+ +.|
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L  116 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTV  116 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEE
T ss_pred             CCceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEE
Confidence            345788999987654432211    123344678888777655 45799999999999999998889988888755 455


Q ss_pred             EEecCCeEEEEeCC
Q psy6446         120 TVTHGSCVTFLDAN  133 (134)
Q Consensus       120 ~~~~~~~i~i~d~~  133 (134)
                      +.-.+..|+-|+++
T Consensus       117 ~lVT~taVYHW~~~  130 (327)
T d1utca2         117 ALVTDNAVYHWSME  130 (327)
T ss_dssp             EEECSSEEEEEESS
T ss_pred             EEEcCCceEEEccc
Confidence            55557788999874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.34  E-value=0.35  Score=31.07  Aligned_cols=50  Identities=4%  Similarity=-0.035  Sum_probs=35.4

Q ss_pred             CcEEEEecCCCceeEEEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCCC
Q psy6446          85 KTVRLWDVSASAEVQKLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDANS  134 (134)
Q Consensus        85 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~t  134 (134)
                      |.+.-||..+++.........+..+-.++..+.+++.+ .||.++.+|.+|
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T  503 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT  503 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCC
Confidence            46788888889888877765555444444456666555 689999999875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.27  E-value=0.29  Score=29.86  Aligned_cols=79  Identities=8%  Similarity=-0.008  Sum_probs=48.3

Q ss_pred             CeeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEecC----------------CCeEEEEECCCCCCCC-eEEeCCC
Q psy6446           1 MGTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATGSN----------------DKNIRIYDLNKPDAEP-TVYRGHS   63 (134)
Q Consensus         1 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------d~~v~i~~~~~~~~~~-~~~~~~~   63 (134)
                      +++++|+.+++.+...-.... ...+.|.++++.|+....                ...+..+.+.+....- ..+....
T Consensus       152 ~l~v~Dl~tg~~~~~~i~~~~-~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d  230 (430)
T d1qfma1         152 TIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (430)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             eeEEeccCcceeccccccccc-ccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc
Confidence            478999999987653211111 133889999988765432                2367778887754322 2233322


Q ss_pred             --CCEeEEEEeeCCCEEEE
Q psy6446          64 --SGIKHVQFFKNNTRLIS   80 (134)
Q Consensus        64 --~~v~~~~~~~~~~~l~~   80 (134)
                        ..+..+..++++++++.
T Consensus       231 ~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         231 EPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CTTCEEEEEECTTSCEEEE
T ss_pred             CCceEEeeeccCCcceeeE
Confidence              34566777889998764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.32  Score=27.70  Aligned_cols=130  Identities=11%  Similarity=-0.021  Sum_probs=76.4

Q ss_pred             eeEeecCCCceeeEEeeCCCceeeEEEccCCcEEEEe-cCCCeEEEEECCCCC--CCC-eEEeCCCCCEeEEEEeeCCCE
Q psy6446           2 GTVWDAVSGEELHSFQHPHIVKSSVHFATDSYRLATG-SNDKNIRIYDLNKPD--AEP-TVYRGHSSGIKHVQFFKNNTR   77 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~   77 (134)
                      |+..++.+.+....+.....++. +.|++..+.++-. ...+.|.-.+++...  ... .........+..+++.+.++.
T Consensus        12 I~~~~l~~~~~~~~~~~~~~~~~-id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          12 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             EEEEETTSCCCEEEECSCSSEEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             EEEEECCCCcceeeeCCCCceEE-EEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            56677776555444455555555 9999877766654 456677766665422  111 222233355778898875655


Q ss_pred             EE-EeeCCCcEEEEecCCCceeEEEec-CCCCeEEEEccCCcEEEEe---cCCeEEEEeC
Q psy6446          78 LI-SCAEDKTVRLWDVSASAEVQKLEF-GAVPNSLEISRDGTTITVT---HGSCVTFLDA  132 (134)
Q Consensus        78 l~-~~~~d~~i~~~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~---~~~~i~i~d~  132 (134)
                      |. +-...+.|.+.++........... ...+..++++|...++..+   ..+.|...++
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence            55 445567899999876655444443 3567889998866555432   2345555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.28  E-value=0.25  Score=29.37  Aligned_cols=96  Identities=11%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             EEEccCCcEEEEecC------------CCeEEEEECCCCCCCCeEEeCCC-------CCEeEEEEee--CCCE-EEEee-
Q psy6446          26 VHFATDSYRLATGSN------------DKNIRIYDLNKPDAEPTVYRGHS-------SGIKHVQFFK--NNTR-LISCA-   82 (134)
Q Consensus        26 ~~~~~~~~~l~~~~~------------d~~v~i~~~~~~~~~~~~~~~~~-------~~v~~~~~~~--~~~~-l~~~~-   82 (134)
                      +...|+|..+++++.            .|.+.++|+.+.......+....       -....++...  +++. |+... 
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            677888877766542            48999999987544332222111       1234555433  4543 44443 


Q ss_pred             --CCCcEEEEecCCCce-eE---EEec--CCCCeEEEEccCCcEEEE
Q psy6446          83 --EDKTVRLWDVSASAE-VQ---KLEF--GAVPNSLEISRDGTTITV  121 (134)
Q Consensus        83 --~d~~i~~~d~~~~~~-~~---~~~~--~~~v~~~~~~~~~~~l~~  121 (134)
                        ...+|.+|++..... ..   .+..  ....+.+.+..++.++++
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~T  166 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYAT  166 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEE
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEe
Confidence              345688888754332 21   1111  134578888888887776

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.71  Score=26.20  Aligned_cols=128  Identities=13%  Similarity=0.010  Sum_probs=69.0

Q ss_pred             eeEeecCCCceeeEEee-CCCceeeEEEccCCcEEEEe--cCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEE
Q psy6446           2 GTVWDAVSGEELHSFQH-PHIVKSSVHFATDSYRLATG--SNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRL   78 (134)
Q Consensus         2 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (134)
                      |.+.++........+.. ...... ++++|...+++..  +..+.|.-.+++... ........-.....+++.+.++.|
T Consensus       101 I~v~~~~g~~~~~~~~~~~~~P~~-l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         101 VSVADTKGVKRKTLFRENGSKPRA-IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEE-EEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred             EEeEecCCceEEEEEcCCCCCcce-EEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEE
Confidence            45566554333333332 233344 8888855555443  234566666665432 222223333567899999877766


Q ss_pred             EEe-eCCCcEEEEecCCCceeEEEecC---CCCeEEEEccCCcEEEEe-cCCeEEEEeC
Q psy6446          79 ISC-AEDKTVRLWDVSASAEVQKLEFG---AVPNSLEISRDGTTITVT-HGSCVTFLDA  132 (134)
Q Consensus        79 ~~~-~~d~~i~~~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~~~~i~i~d~  132 (134)
                      .-+ ...+.|...++............   ....++++.. +....+. .++.|...+.
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEEC
Confidence            544 55678888888654443333322   2345666662 2333333 4577766654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.76  E-value=1.1  Score=27.65  Aligned_cols=53  Identities=4%  Similarity=-0.058  Sum_probs=38.8

Q ss_pred             CCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEEec---------CCCCeEEEEccC
Q psy6446          63 SSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKLEF---------GAVPNSLEISRD  115 (134)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---------~~~v~~~~~~~~  115 (134)
                      -....+|+|.|+++.+++--..|.|++++..+++.......         +.....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            35678999999999888876679999998877665443321         133467999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.31  E-value=0.87  Score=25.80  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=61.7

Q ss_pred             eeEEEccCCcEEEEec-C--CCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEe-eCCCcEEEEecCCCceeE
Q psy6446          24 SSVHFATDSYRLATGS-N--DKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISC-AEDKTVRLWDVSASAEVQ   99 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~-~--d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~   99 (134)
                      ..++++|...+++... .  ...|.--+++.... .......-.....+++.+.++.|.-+ ...+.|...|+.......
T Consensus       125 ~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~  203 (263)
T d1npea_         125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (263)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             cEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE
Confidence            3488888666655432 2  22344445554332 22222333567899998877776544 566789989887554443


Q ss_pred             EEecCCCCeEEEEccCCcEEEEe-cCCeEEEEeCC
Q psy6446         100 KLEFGAVPNSLEISRDGTTITVT-HGSCVTFLDAN  133 (134)
Q Consensus       100 ~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~d~~  133 (134)
                      .+.......++++. ++....+. ..+.|...|..
T Consensus       204 v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         204 VLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence            33333345677776 33333343 45777777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.41  E-value=1.1  Score=25.45  Aligned_cols=108  Identities=7%  Similarity=0.021  Sum_probs=63.8

Q ss_pred             eEEEccCCcEEE-EecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEE-EeeCC--CcEEEEecCCCceeEE
Q psy6446          25 SVHFATDSYRLA-TGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLI-SCAED--KTVRLWDVSASAEVQK  100 (134)
Q Consensus        25 ~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~~~d~~~~~~~~~  100 (134)
                      .+++..-+..|. +-...+.|.+.+++.... ..........+..+++.|...++. +-...  ..|.--++........
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            488876555554 555677899999876432 223333346788999999666665 33222  2344445543333332


Q ss_pred             Eec-CCCCeEEEEccCCcEEEEe--cCCeEEEEeCC
Q psy6446         101 LEF-GAVPNSLEISRDGTTITVT--HGSCVTFLDAN  133 (134)
Q Consensus       101 ~~~-~~~v~~~~~~~~~~~l~~~--~~~~i~i~d~~  133 (134)
                      ... -..+..+++++.+..|...  ..+.|...|+.
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            222 2345789998877666543  45788777763

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.01  E-value=1.9  Score=26.58  Aligned_cols=56  Identities=9%  Similarity=0.056  Sum_probs=36.9

Q ss_pred             eCCCceeeEEEccCCcEEEEecCCCeEEEEECCCCCCCC-eE------EeCCCCCEeEEEEeeC
Q psy6446          18 HPHIVKSSVHFATDSYRLATGSNDKNIRIYDLNKPDAEP-TV------YRGHSSGIKHVQFFKN   74 (134)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~------~~~~~~~v~~~~~~~~   74 (134)
                      .-..... ++|.|+++++++--..|.|++++..++.... ..      ...-++....++++|+
T Consensus        25 ~L~~P~~-la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHA-LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceE-EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4445555 9999999988877667999999876643211 00      0112356788999984

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.40  E-value=2.9  Score=25.29  Aligned_cols=95  Identities=7%  Similarity=0.022  Sum_probs=61.0

Q ss_pred             eeEEEccCCcEEEEecCCCeEEEEECCCCCCCCeEEeCCCCCEeEEEEeeCCCEEEEeeCCCcEEEEecCCCceeEEE--
Q psy6446          24 SSVHFATDSYRLATGSNDKNIRIYDLNKPDAEPTVYRGHSSGIKHVQFFKNNTRLISCAEDKTVRLWDVSASAEVQKL--  101 (134)
Q Consensus        24 ~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--  101 (134)
                      ..++|+-  ..++.. .++.+..++....... .....-..++.++.++|  ..++....++.+.++++..++.....  
T Consensus        90 ~~vafs~--d~l~v~-~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~  163 (381)
T d1xipa_          90 IFVCFHG--DQVLVS-TRNALYSLDLEELSEF-RTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQN  163 (381)
T ss_dssp             EEEEEET--TEEEEE-ESSEEEEEESSSTTCE-EEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEeeC--CEEEEE-eCCCEEEEEeeccccc-cccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCC
Confidence            3388864  345554 3456777777653322 22233345677777765  45667778889999999887654332  


Q ss_pred             ----ecCCCCeEEEEccCCcEEEEecC
Q psy6446         102 ----EFGAVPNSLEISRDGTTITVTHG  124 (134)
Q Consensus       102 ----~~~~~v~~~~~~~~~~~l~~~~~  124 (134)
                          .....+.+++|++.|..++++.+
T Consensus       164 v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         164 VTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             cceEEecCCceEEEEeCCcEEEEEeCC
Confidence                23567889999998888777643